0.015415 0.000000 0.005785 0.000000 0.039426 0.000000 0.000000 0.000000 0.028579 0.000000 0.000000 0.000000 Thorpe, J.H. Teixeira, S.C.M. Gale, B.C. Cardin, C.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 110.57 90.00 64.871 25.364 37.373 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 58 567 569 10.1107/S0907444902001555 11856858 Structural characterization of a new crystal form of the four-way Holliday junction formed by the DNA sequence d(CCGGTACCGG)2: sequence versus lattice? 2002 10.2210/pdb1juc/pdb pdb_00001juc 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100 1 mirrors IMAGE PLATE 2001-07-28 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.073 1.0 X31 EMBL/DESY, HAMBURG 1.073 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 3045.992 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3' 2 syn polymer 18.015 water 43 nat water no no (DC)(DC)(DG)(DG)(DT)(DA)(DC)(DC)(DG)(DG) CCGGTACCGG A,B polydeoxyribonucleotide n n n n n n n n n n 1 3.24 62.1 VAPOR DIFFUSION, SITTING DROP 6.0 40 mM sodium cacodylate (pH 7.0), 12 mM spermine, 80 mM KCl, 10% (v/v) MPD equilibrated against 35% MPD with oligo concentration of 1 mM, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 290.0K 290.0 sodium cacodylate 1 spermine 1 KCl 1 MPD 1 MPD 2 4.331 1 19 A 1 B 20 0.474 A_DC1:DG20_B 1 -9.945 0.103 -0.016 -0.143 5.371 1 19 A 2 B 19 -5.086 A_DC2:DG19_B 2 -1.952 -0.144 0.003 -0.255 2.140 1 19 A 3 B 18 -2.765 A_DG3:DC18_B 3 1.353 -0.074 0.445 -0.110 -5.630 1 19 A 4 B 17 -10.137 A_DG4:DC17_B 4 -16.899 0.225 -0.014 -0.291 -7.383 1 20 A 5 B 16 -3.110 A_DT5:DA16_B 5 -9.505 -0.097 0.531 -0.214 4.729 1 20 A 6 B 15 -5.059 A_DA6:DT15_B 6 -7.031 0.266 0.178 0.088 3.528 39.967 A A 1 2 1.086 B B 20 19 3.458 0.739 0.494 2.131 AA_DC1DC2:DG19DG20_BB 1 7.457 -10.969 39.287 3.026 0.201 3.297 42.004 A A 2 3 -3.072 B B 19 18 3.440 -2.201 0.267 2.483 AA_DC2DG3:DC18DG19_BB 2 -1.937 2.705 41.906 3.699 -0.580 4.015 42.266 A A 3 4 9.436 B B 18 17 3.809 6.776 -0.920 1.491 AA_DG3DG4:DC17DC18_BB 3 -1.154 1.607 41.729 1.231 1.134 3.310 27.637 A A 4 5 -7.746 B B 17 16 3.336 -3.683 0.165 -0.303 AA_DG4DT5:DA16DC17_BB 4 -3.011 6.334 27.233 0.281 -1.094 3.081 36.263 A A 5 6 4.257 B B 16 15 3.046 2.640 0.187 0.615 AA_DT5DA6:DT15DA16_BB 5 4.721 -7.611 35.871 0.640 0.323 chem_comp_atom chem_comp_bond database_2 diffrn_source repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 2002-02-22 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _diffrn_source.pdbx_synchrotron_site RCSB Y RCSB 2001-08-24 REL REL HOH water HOH 103 2 HOH HOH 103 A HOH 105 2 HOH HOH 105 A HOH 107 2 HOH HOH 107 A HOH 109 2 HOH HOH 109 A HOH 110 2 HOH HOH 110 A HOH 111 2 HOH HOH 111 A HOH 113 2 HOH HOH 113 A HOH 115 2 HOH HOH 115 A HOH 116 2 HOH HOH 116 A HOH 119 2 HOH HOH 119 A HOH 120 2 HOH HOH 120 A HOH 122 2 HOH HOH 122 A HOH 123 2 HOH HOH 123 A HOH 125 2 HOH HOH 125 A HOH 126 2 HOH HOH 126 A HOH 129 2 HOH HOH 129 A HOH 132 2 HOH HOH 132 A HOH 133 2 HOH HOH 133 A HOH 138 2 HOH HOH 138 A HOH 139 2 HOH HOH 139 A HOH 141 2 HOH HOH 141 A HOH 143 2 HOH HOH 143 A HOH 101 2 HOH HOH 101 B HOH 102 2 HOH HOH 102 B HOH 104 2 HOH HOH 104 B HOH 106 2 HOH HOH 106 B HOH 108 2 HOH HOH 108 B HOH 112 2 HOH HOH 112 B HOH 114 2 HOH HOH 114 B HOH 117 2 HOH HOH 117 B HOH 118 2 HOH HOH 118 B HOH 121 2 HOH HOH 121 B HOH 124 2 HOH HOH 124 B HOH 127 2 HOH HOH 127 B HOH 128 2 HOH HOH 128 B HOH 130 2 HOH HOH 130 B HOH 131 2 HOH HOH 131 B HOH 134 2 HOH HOH 134 B HOH 135 2 HOH HOH 135 B HOH 136 2 HOH HOH 136 B HOH 137 2 HOH HOH 137 B HOH 140 2 HOH HOH 140 B HOH 142 2 HOH HOH 142 B C 1 n 1 DC 1 A C 2 n 2 DC 2 A G 3 n 3 DG 3 A G 4 n 4 DG 4 A T 5 n 5 DT 5 A A 6 n 6 DA 6 A C 7 n 7 DC 7 A C 8 n 8 DC 8 A G 9 n 9 DG 9 A G 10 n 10 DG 10 A C 11 n 1 DC 11 B C 12 n 2 DC 12 B G 13 n 3 DG 13 B G 14 n 4 DG 14 B T 15 n 5 DT 15 B A 16 n 6 DA 16 B C 17 n 7 DC 17 B C 18 n 8 DC 18 B G 19 n 9 DG 19 B G 20 n 10 DG 20 B 0.2503000 0.2911000 2979 author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_555 -x,y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 B HOH 140 D HOH 1 B C1' DC 17 PLANAR 1 -4.86 0.80 105.90 101.04 A A A O4' C1' C2' DC DC DC 2 2 2 N 1 -3.24 0.50 111.90 108.66 A A A C2 N3 C4 DG DG DG 4 4 4 N 1 2.34 0.30 108.30 110.64 A A A O4' C1' N9 DA DA DA 6 6 6 N 1 -4.23 0.70 108.00 103.77 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 -4.83 0.70 102.20 97.37 A A A C4' C3' C2' DG DG DG 9 9 9 N 1 -4.57 0.60 125.10 120.53 B B B C6 N1 C2 DG DG DG 13 13 13 N 1 -12.07 0.40 104.50 92.43 B B B O4' C4' C3' DC DC DC 17 17 17 N 1 -8.74 1.00 110.10 101.36 B B B C1' O4' C4' DC DC DC 17 17 17 N 1 6.35 0.90 103.10 109.45 B B B C4' C3' C2' DC DC DC 17 17 17 N 1 -10.21 0.80 102.40 92.19 B B B C3' C2' C1' DC DC DC 17 17 17 N 1 9.17 0.50 106.80 115.97 B B B O4' C1' C2' DC DC DC 17 17 17 N 1 9.72 1.40 114.30 124.02 B B B N1 C1' C2' DC DC DC 17 17 17 N 1 9.09 0.30 108.30 117.39 B B B O4' C1' N1 DC DC DC 17 17 17 N 1 -2.49 0.40 120.30 117.81 B B B C6 N1 C2 DC DC DC 17 17 17 N 1 7.13 1.10 118.80 125.93 B B B C2 N1 C1' DC DC DC 17 17 17 N 1 -10.81 1.60 120.90 110.09 B B B P O5' C5' DG DG DG 19 19 19 N 1 -3.99 0.40 104.50 100.51 B B B O4' C4' C3' DG DG DG 19 19 19 N 1 -3.66 0.60 128.60 124.94 B B B C5 C6 O6 DG DG DG 19 19 19 N 1 -2.85 0.40 104.50 101.65 B B B O4' C4' C3' DG DG DG 20 20 20 N 1 A A O3' C3' DC DC 1 1 -0.116 0.006 1.419 1.303 N 1 A A C1' N1 DC DC 1 1 -0.117 0.014 1.468 1.351 N 1 A A N1 C6 DC DC 1 1 -0.081 0.006 1.367 1.286 N 1 A A N3 C4 DC DC 1 1 -0.111 0.007 1.335 1.224 N 1 A A O3' P DC DC 1 2 -0.104 0.012 1.607 1.503 Y 1 A A C4' C3' DC DC 2 2 -0.086 0.010 1.521 1.435 N 1 A A O3' C3' DC DC 2 2 -0.044 0.006 1.419 1.375 N 1 A A N1 C6 DC DC 2 2 -0.067 0.006 1.367 1.300 N 1 A A N3 C4 DC DC 2 2 -0.046 0.007 1.335 1.289 N 1 A A P O5' DG DG 3 3 -0.072 0.010 1.593 1.521 N 1 A A C5' C4' DG DG 3 3 0.065 0.007 1.512 1.577 N 1 A A C4' C3' DG DG 3 3 0.079 0.010 1.529 1.608 N 1 A A C2' C1' DG DG 3 3 0.069 0.010 1.519 1.588 N 1 A A O3' C3' DG DG 3 3 -0.073 0.006 1.419 1.346 N 1 A A C1' N9 DG DG 3 3 -0.089 0.014 1.468 1.379 N 1 A A N3 C4 DG DG 3 3 0.049 0.007 1.350 1.399 N 1 A A C6 N1 DG DG 3 3 0.046 0.007 1.391 1.437 N 1 A A C5 N7 DG DG 3 3 0.048 0.006 1.388 1.436 N 1 A A C6 O6 DG DG 3 3 0.107 0.009 1.237 1.344 N 1 A A C5' C4' DG DG 4 4 0.043 0.007 1.512 1.555 N 1 A A N3 C4 DG DG 4 4 -0.100 0.007 1.350 1.250 N 1 A A C5 C6 DG DG 4 4 -0.103 0.010 1.419 1.316 N 1 A A C6 N1 DG DG 4 4 -0.122 0.007 1.391 1.269 N 1 A A C5 N7 DG DG 4 4 -0.122 0.006 1.388 1.266 N 1 A A N7 C8 DG DG 4 4 0.061 0.006 1.305 1.366 N 1 A A N9 C4 DG DG 4 4 -0.069 0.008 1.375 1.306 N 1 A A C2 N2 DG DG 4 4 -0.085 0.010 1.341 1.256 N 1 A A C6 O6 DG DG 4 4 -0.093 0.009 1.237 1.144 N 1 A A C1' N1 DT DT 5 5 0.095 0.013 1.488 1.583 N 1 A A C2 N3 DT DT 5 5 0.080 0.008 1.373 1.453 N 1 A A C5 C6 DT DT 5 5 0.057 0.007 1.339 1.396 N 1 A A C6 N1 DT DT 5 5 -0.055 0.007 1.378 1.323 N 1 A A P O5' DA DA 6 6 0.090 0.010 1.593 1.683 N 1 A A C5' C4' DA DA 6 6 0.080 0.007 1.512 1.592 N 1 A A O3' C3' DA DA 6 6 -0.213 0.006 1.419 1.206 N 1 A A N1 C2 DA DA 6 6 0.110 0.009 1.339 1.449 N 1 A A N7 C8 DA DA 6 6 0.049 0.007 1.311 1.360 N 1 A A N9 C4 DA DA 6 6 0.041 0.006 1.374 1.415 N 1 A A C6 N6 DA DA 6 6 0.059 0.008 1.335 1.394 N 1 A A O3' C3' DC DC 7 7 -0.098 0.006 1.419 1.321 N 1 A A C1' N1 DC DC 7 7 0.099 0.013 1.488 1.587 N 1 A A C2 O2 DC DC 7 7 -0.070 0.009 1.240 1.170 N 1 A A N1 C6 DC DC 7 7 -0.057 0.006 1.367 1.310 N 1 A A C2 N3 DC DC 7 7 -0.061 0.008 1.353 1.292 N 1 A A N3 C4 DC DC 7 7 -0.080 0.007 1.335 1.255 N 1 A A C4 C5 DC DC 7 7 0.076 0.008 1.425 1.501 N 1 A A C1' N1 DC DC 8 8 -0.116 0.014 1.468 1.352 N 1 A A C2 O2 DC DC 8 8 -0.058 0.009 1.240 1.182 N 1 A A O4' C4' DG DG 9 9 0.084 0.009 1.449 1.533 N 1 A A O3' C3' DG DG 9 9 -0.048 0.006 1.419 1.371 N 1 A A C5 N7 DG DG 9 9 0.039 0.006 1.388 1.427 N 1 A A N7 C8 DG DG 9 9 0.060 0.006 1.305 1.365 N 1 A A C2 N2 DG DG 9 9 -0.085 0.010 1.341 1.256 N 1 A A P OP2 DG DG 10 10 -0.275 0.017 1.485 1.210 N 1 A A O5' C5' DG DG 10 10 0.160 0.016 1.440 1.600 N 1 A A O4' C1' DG DG 10 10 0.067 0.011 1.420 1.487 N 1 A A O4' C4' DG DG 10 10 0.062 0.009 1.449 1.511 N 1 A A C4 C5 DG DG 10 10 -0.071 0.007 1.379 1.308 N 1 A A C8 N9 DG DG 10 10 -0.103 0.007 1.374 1.271 N 1 A A N9 C4 DG DG 10 10 0.083 0.008 1.375 1.458 N 1 A A C6 O6 DG DG 10 10 -0.104 0.009 1.237 1.133 N 1 B B O5' C5' DC DC 11 11 0.118 0.016 1.440 1.558 N 1 B B C4' C3' DC DC 11 11 0.069 0.010 1.529 1.598 N 1 B B O3' C3' DC DC 11 11 -0.153 0.006 1.419 1.266 N 1 B B N1 C6 DC DC 11 11 -0.115 0.006 1.367 1.252 N 1 B B C2 N3 DC DC 11 11 -0.077 0.008 1.353 1.276 N 1 B B N3 C4 DC DC 11 11 -0.095 0.007 1.335 1.240 N 1 B B O3' P DC DC 11 12 -0.118 0.012 1.607 1.489 Y 1 B B P OP1 DC DC 12 12 -0.127 0.017 1.485 1.358 N 1 B B C4' C3' DC DC 12 12 0.072 0.010 1.529 1.601 N 1 B B C2' C1' DC DC 12 12 -0.073 0.010 1.518 1.445 N 1 B B O4' C1' DC DC 12 12 0.092 0.011 1.420 1.512 N 1 B B O3' C3' DC DC 12 12 -0.098 0.006 1.419 1.321 N 1 B B N1 C2 DC DC 12 12 -0.165 0.010 1.397 1.232 N 1 B B N1 C6 DC DC 12 12 -0.047 0.006 1.367 1.320 N 1 B B C4 C5 DC DC 12 12 -0.083 0.008 1.425 1.342 N 1 B B O4' C4' DG DG 13 13 0.127 0.009 1.449 1.576 N 1 B B O3' C3' DG DG 13 13 -0.168 0.006 1.419 1.251 N 1 B B C1' N9 DG DG 13 13 -0.085 0.014 1.468 1.383 N 1 B B N1 C2 DG DG 13 13 0.105 0.008 1.373 1.478 N 1 B B C2 N3 DG DG 13 13 -0.084 0.008 1.323 1.239 N 1 B B N3 C4 DG DG 13 13 -0.056 0.007 1.350 1.294 N 1 B B C4 C5 DG DG 13 13 -0.084 0.007 1.379 1.295 N 1 B B C6 N1 DG DG 13 13 -0.066 0.007 1.391 1.325 N 1 B B N7 C8 DG DG 13 13 -0.055 0.006 1.305 1.250 N 1 B B N9 C4 DG DG 13 13 -0.077 0.008 1.375 1.298 N 1 B B C2 N2 DG DG 13 13 -0.119 0.010 1.341 1.222 N 1 B B C6 O6 DG DG 13 13 -0.148 0.009 1.237 1.089 N 1 B B C5' C4' DG DG 14 14 0.099 0.007 1.512 1.611 N 1 B B O3' C3' DG DG 14 14 -0.077 0.006 1.419 1.342 N 1 B B N1 C2 DG DG 14 14 0.078 0.008 1.373 1.451 N 1 B B N3 C4 DG DG 14 14 -0.067 0.007 1.350 1.283 N 1 B B C6 N1 DG DG 14 14 -0.042 0.007 1.391 1.349 N 1 B B C5 N7 DG DG 14 14 -0.067 0.006 1.388 1.321 N 1 B B N7 C8 DG DG 14 14 0.070 0.006 1.305 1.375 N 1 B B C8 N9 DG DG 14 14 -0.062 0.007 1.374 1.312 N 1 B B P OP2 DT DT 15 15 -0.247 0.017 1.485 1.238 N 1 B B P O5' DT DT 15 15 -0.072 0.010 1.593 1.521 N 1 B B O5' C5' DT DT 15 15 0.145 0.016 1.440 1.585 N 1 B B O4' C1' DT DT 15 15 -0.161 0.012 1.418 1.257 N 1 B B C1' N1 DT DT 15 15 -0.134 0.014 1.468 1.334 N 1 B B N1 C2 DT DT 15 15 0.093 0.008 1.376 1.469 N 1 B B N3 C4 DT DT 15 15 -0.123 0.008 1.382 1.259 N 1 B B C5 C6 DT DT 15 15 0.057 0.007 1.339 1.396 N 1 B B C6 N1 DT DT 15 15 -0.092 0.007 1.378 1.286 N 1 B B C2 O2 DT DT 15 15 0.070 0.008 1.220 1.290 N 1 B B C4 O4 DT DT 15 15 -0.066 0.009 1.228 1.162 N 1 B B O3' P DT DA 15 16 -0.139 0.012 1.607 1.468 Y 1 B B C2' C1' DA DA 16 16 0.074 0.010 1.519 1.593 N 1 B B O3' C3' DA DA 16 16 -0.042 0.006 1.419 1.377 N 1 B B N3 C4 DA DA 16 16 -0.054 0.006 1.344 1.290 N 1 B B C4 C5 DA DA 16 16 -0.076 0.007 1.383 1.307 N 1 B B C6 N1 DA DA 16 16 -0.114 0.007 1.351 1.237 N 1 B B N7 C8 DA DA 16 16 -0.083 0.007 1.311 1.228 N 1 B B N9 C4 DA DA 16 16 -0.087 0.006 1.374 1.287 N 1 B B P O5' DC DC 17 17 -0.071 0.010 1.593 1.522 N 1 B B C2' C1' DC DC 17 17 -0.112 0.010 1.518 1.406 N 1 B B O4' C1' DC DC 17 17 -0.223 0.012 1.418 1.195 N 1 B B O3' C3' DC DC 17 17 -0.111 0.006 1.419 1.308 N 1 B B C1' N1 DC DC 17 17 -0.094 0.014 1.468 1.374 N 1 B B N1 C6 DC DC 17 17 -0.038 0.006 1.367 1.329 N 1 B B C2 N3 DC DC 17 17 -0.070 0.008 1.353 1.283 N 1 B B N3 C4 DC DC 17 17 -0.043 0.007 1.335 1.292 N 1 B B C4 C5 DC DC 17 17 -0.054 0.008 1.425 1.371 N 1 B B O4' C1' DC DC 18 18 0.117 0.011 1.420 1.537 N 1 B B O3' C3' DC DC 18 18 -0.080 0.006 1.419 1.339 N 1 B B N1 C2 DC DC 18 18 -0.099 0.010 1.397 1.298 N 1 B B N1 C6 DC DC 18 18 -0.057 0.006 1.367 1.310 N 1 B B C2 N3 DC DC 18 18 -0.066 0.008 1.353 1.287 N 1 B B N3 C4 DC DC 18 18 -0.100 0.007 1.335 1.235 N 1 B B O3' P DC DG 18 19 0.099 0.012 1.607 1.706 Y 1 B B P O5' DG DG 19 19 -0.318 0.010 1.593 1.275 N 1 B B O5' C5' DG DG 19 19 -0.170 0.025 1.418 1.248 N 1 B B O4' C4' DG DG 19 19 0.097 0.009 1.449 1.546 N 1 B B O3' C3' DG DG 19 19 0.107 0.013 1.435 1.542 N 1 B B C1' N9 DG DG 19 19 -0.110 0.014 1.468 1.358 N 1 B B C4 C5 DG DG 19 19 -0.045 0.007 1.379 1.334 N 1 B B C6 N1 DG DG 19 19 0.073 0.007 1.391 1.464 N 1 B B C5' C4' DG DG 20 20 0.100 0.007 1.512 1.612 N 1 B B C2 N3 DG DG 20 20 0.076 0.008 1.323 1.399 N 1 B B N3 C4 DG DG 20 20 -0.068 0.007 1.350 1.282 N 41.349 -2.92 0.00 -0.01 3.32 0.00 -0.41 0.951 0.952 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.2677900 0.2263900 0.2284100 2.35 34.92 104 2286 4.4 96.41 0.325 RANDOM 1 THROUGHOUT 0.376 0.286 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 0 0.00 426.00 2.35 34.92 43 447 0 404 0 0.067 0.021 452 0.002 0.020 181 2.195 3.000 694 1.463 3.000 459 0.518 0.200 60 0.033 0.020 208 0.268 0.300 131 0.329 0.300 226 0.157 0.500 2 0.523 0.500 31 0.025 0.500 1 0.155 0.300 20 0.213 0.300 19 0.204 0.500 11 0.3930000 0.2970000 2.411 7 157 20 2.35 30.0 1JUC 4339 2387 4.0 2.0 0.0640000 1 96.3 0.2670000 2.35 2.43 97.3 data reduction XFIT refinement REFMAC 5.0 data reduction DENZO data scaling SCALEPACK Crystal Structure Analysis of a Holliday Junction Formed by CCGGTACCGG 1 N N 1 N N 2 N N 2 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 20 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 20 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 20 B N2 DG 10 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 19 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 19 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 19 B N2 DG 9 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 18 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 18 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 18 B N4 DC 8 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 17 B N3 DC 7 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 17 B O2 DC 7 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 17 B N4 DC 7 1_555 hydrog WATSON-CRICK A DT 5 A N3 DT 5 1_555 B DA 16 B N1 DA 6 1_555 hydrog WATSON-CRICK A DT 5 A O4 DT 5 1_555 B DA 16 B N6 DA 6 1_555 hydrog WATSON-CRICK A DA 6 A N1 DA 6 1_555 B DT 15 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 6 A N6 DA 6 1_555 B DT 15 B O4 DT 5 1_555 DNA HOLLIDAY JUNCTION, DNA 1JUC PDB 1 1JUC 1 10 1JUC 1 10 1JUC A 1 1 10 11 20 1JUC 11 20 1JUC B 1 1 10 5 C 1 2 1