32.83
11.893
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A
O5'
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1
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A
O5'
DI
1
1
1.00
1
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19.95
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A
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DI
1
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A
C5'
DI
1
1
1.00
1
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17.39
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A
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DI
1
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A
C4'
DI
1
1
1.00
1
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16.67
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A
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DI
1
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A
O4'
DI
1
1
1.00
1
O
15.34
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A
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DI
1
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A
C3'
DI
1
1
1.00
1
C
13.50
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A
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DI
1
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A
O3'
DI
1
1
1.00
1
O
14.77
8.456
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A
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1
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A
C2'
DI
1
1
1.00
1
C
16.46
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A
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1
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A
C1'
DI
1
1
1.00
1
C
15.37
8.891
5.590
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A
N9
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1
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A
N9
DI
1
1
1.00
1
N
15.45
10.038
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A
C8
DI
1
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A
C8
DI
1
1
1.00
1
C
15.06
10.212
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-8.318
A
N7
DI
1
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A
N7
DI
1
1
1.00
1
N
13.29
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A
C5
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1
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A
C5
DI
1
1
1.00
1
C
12.10
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A
C6
DI
1
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A
C6
DI
1
1
1.00
1
C
13.66
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-8.710
A
O6
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1
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A
O6
DI
1
1
1.00
1
O
12.38
7.559
1.935
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A
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1
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A
N1
DI
1
1
1.00
1
N
12.50
6.788
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A
C2
DI
1
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A
C2
DI
1
1
1.00
1
C
12.34
7.099
4.248
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A
N3
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1
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A
N3
DI
1
1
1.00
1
N
13.64
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A
C4
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1
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A
C4
DI
1
1
1.00
1
C
13.46
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A
P
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2
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A
P
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1
2
1.00
1
P
15.73
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A
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2
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A
OP1
DT
1
2
1.00
1
O
13.37
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2
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A
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1
2
1.00
1
O
12.97
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2
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A
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1
2
1.00
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O
13.33
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2
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A
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1
2
1.00
1
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10.38
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2
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A
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DT
1
2
1.00
1
C
9.83
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2
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A
O4'
DT
1
2
1.00
1
O
10.72
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A
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2
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A
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DT
1
2
1.00
1
C
12.39
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2
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A
O3'
DT
1
2
1.00
1
O
10.72
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-6.535
A
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2
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A
C2'
DT
1
2
1.00
1
C
10.56
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-7.283
A
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2
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A
C1'
DT
1
2
1.00
1
C
12.48
5.334
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-6.759
A
N1
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2
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A
N1
DT
1
2
1.00
1
N
12.22
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-6.972
A
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2
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A
C2
DT
1
2
1.00
1
C
12.09
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A
O2
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2
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A
O2
DT
1
2
1.00
1
O
11.19
6.279
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A
N3
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2
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A
N3
DT
1
2
1.00
1
N
11.28
7.389
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A
C4
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2
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A
C4
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1
2
1.00
1
C
12.84
8.237
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2
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A
O4
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1
2
1.00
1
O
8.68
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A
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2
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A
C5
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1
2
1.00
1
C
13.54
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A
C7
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2
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A
C7
DT
1
2
1.00
1
C
10.73
6.424
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A
C6
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2
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A
C6
DT
1
2
1.00
1
C
12.87
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A
P
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3
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A
P
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1
3
1.00
1
P
15.43
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9.044
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A
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3
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A
OP1
DI
1
3
1.00
1
O
15.20
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8.742
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A
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3
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A
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DI
1
3
1.00
1
O
10.85
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7.030
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A
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3
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A
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DI
1
3
1.00
1
O
11.87
-0.989
6.268
-8.662
A
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DI
3
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A
C5'
DI
1
3
1.00
1
C
11.36
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-8.285
A
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DI
3
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A
C4'
DI
1
3
1.00
1
C
11.66
-0.900
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-7.738
A
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3
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A
O4'
DI
1
3
1.00
1
O
10.71
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5.246
-7.242
A
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DI
3
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A
C3'
DI
1
3
1.00
1
C
12.54
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4.421
-7.617
A
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DI
3
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A
O3'
DI
1
3
1.00
1
O
11.11
-2.209
4.823
-5.931
A
C2'
DI
3
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A
C2'
DI
1
3
1.00
1
C
11.42
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3.759
-6.357
A
C1'
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3
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A
C1'
DI
1
3
1.00
1
C
10.40
0.076
3.809
-5.661
A
N9
DI
3
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A
N9
DI
1
3
1.00
1
N
10.89
0.817
4.936
-5.385
A
C8
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3
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A
C8
DI
1
3
1.00
1
C
12.67
2.003
4.658
-4.914
A
N7
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3
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A
N7
DI
1
3
1.00
1
N
9.61
2.026
3.272
-4.841
A
C5
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3
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A
C5
DI
1
3
1.00
1
C
11.10
3.063
2.385
-4.422
A
C6
DI
3
ATOM
A
C6
DI
1
3
1.00
1
C
12.04
4.196
2.656
-4.046
A
O6
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3
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A
O6
DI
1
3
1.00
1
O
10.64
2.660
1.060
-4.488
A
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3
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A
N1
DI
1
3
1.00
1
N
11.72
1.429
0.637
-4.907
A
C2
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3
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A
C2
DI
1
3
1.00
1
C
9.16
0.462
1.445
-5.310
A
N3
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3
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A
N3
DI
1
3
1.00
1
N
9.00
0.832
2.740
-5.255
A
C4
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3
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A
C4
DI
1
3
1.00
1
C
12.26
-5.305
4.396
-6.732
A
P
DT
4
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A
P
DT
1
4
1.00
1
P
12.97
-6.380
3.982
-7.667
A
OP1
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4
ATOM
A
OP1
DT
1
4
1.00
1
O
13.12
-5.445
5.638
-5.890
A
OP2
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4
ATOM
A
OP2
DT
1
4
1.00
1
O
11.20
-5.026
3.191
-5.733
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O5'
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4
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A
O5'
DT
1
4
1.00
1
O
10.61
-4.877
1.866
-6.233
A
C5'
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4
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A
C5'
DT
1
4
1.00
1
C
9.73
-4.692
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A
C4'
DT
4
ATOM
A
C4'
DT
1
4
1.00
1
C
9.70
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1.100
-4.511
A
O4'
DT
4
ATOM
A
O4'
DT
1
4
1.00
1
O
9.88
-5.687
1.134
-3.938
A
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4
ATOM
A
C3'
DT
1
4
1.00
1
C
8.00
-6.159
-0.129
-3.489
A
O3'
DT
4
ATOM
A
O3'
DT
1
4
1.00
1
O
9.25
-4.845
1.759
-2.847
A
C2'
DT
4
ATOM
A
C2'
DT
1
4
1.00
1
C
8.90
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-3.103
A
C1'
DT
4
ATOM
A
C1'
DT
1
4
1.00
1
C
10.37
-2.315
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-2.589
A
N1
DT
4
ATOM
A
N1
DT
1
4
1.00
1
N
8.45
-1.208
1.029
-2.232
A
C2
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4
ATOM
A
C2
DT
1
4
1.00
1
C
9.85
-1.172
-0.180
-2.308
A
O2
DT
4
ATOM
A
O2
DT
1
4
1.00
1
O
10.16
-0.127
1.747
-1.820
A
N3
DT
4
ATOM
A
N3
DT
1
4
1.00
1
N
10.23
-0.026
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-1.754
A
C4
DT
4
ATOM
A
C4
DT
1
4
1.00
1
C
12.73
1.017
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A
O4
DT
4
ATOM
A
O4
DT
1
4
1.00
1
O
11.13
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A
C5
DT
4
ATOM
A
C5
DT
1
4
1.00
1
C
11.92
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A
C7
DT
4
ATOM
A
C7
DT
1
4
1.00
1
C
9.40
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-2.511
A
C6
DT
4
ATOM
A
C6
DT
1
4
1.00
1
C
11.58
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-3.973
A
P
DA
5
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A
P
DA
1
5
1.00
1
P
11.15
-7.609
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A
OP1
DA
5
ATOM
A
OP1
DA
1
5
1.00
1
O
14.42
-8.642
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-3.200
A
OP2
DA
5
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A
OP2
DA
1
5
1.00
1
O
12.88
-7.555
-2.178
-3.496
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5
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A
O5'
DA
1
5
1.00
1
O
13.53
-6.694
-3.108
-4.132
A
C5'
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5
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A
C5'
DA
1
5
1.00
1
C
11.51
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-3.974
-3.092
A
C4'
DA
5
ATOM
A
C4'
DA
1
5
1.00
1
C
11.33
-5.104
-3.182
-2.289
A
O4'
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5
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A
O4'
DA
1
5
1.00
1
O
11.16
-6.949
-4.684
-2.114
A
C3'
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5
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A
C3'
DA
1
5
1.00
1
C
12.81
-6.383
-5.976
-1.899
A
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5
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A
O3'
DA
1
5
1.00
1
O
12.07
-6.880
-3.812
-0.860
A
C2'
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5
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A
C2'
DA
1
5
1.00
1
C
11.08
-5.457
-3.258
-0.906
A
C1'
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5
ATOM
A
C1'
DA
1
5
1.00
1
C
11.26
-5.288
-1.910
-0.365
A
N9
DA
5
ATOM
A
N9
DA
1
5
1.00
1
N
9.32
-6.220
-0.883
-0.314
A
C8
DA
5
ATOM
A
C8
DA
1
5
1.00
1
C
10.20
-5.711
0.266
0.088
A
N7
DA
5
ATOM
A
N7
DA
1
5
1.00
1
N
10.13
-4.378
-0.028
0.339
A
C5
DA
5
ATOM
A
C5
DA
1
5
1.00
1
C
9.47
-3.305
0.773
0.767
A
C6
DA
5
ATOM
A
C6
DA
1
5
1.00
1
C
11.54
-3.406
2.087
0.958
A
N6
DA
5
ATOM
A
N6
DA
1
5
1.00
1
N
11.10
-2.109
0.180
0.970
A
N1
DA
5
ATOM
A
N1
DA
1
5
1.00
1
N
11.21
-1.998
-1.144
0.724
A
C2
DA
5
ATOM
A
C2
DA
1
5
1.00
1
C
9.33
-2.927
-2.000
0.290
A
N3
DA
5
ATOM
A
N3
DA
1
5
1.00
1
N
9.91
-4.113
-1.371
0.109
A
C4
DA
5
ATOM
A
C4
DA
1
5
1.00
1
C
13.58
-7.113
-7.035
-0.953
A
P
DC
6
ATOM
A
P
DC
1
6
1.00
1
P
16.60
-6.596
-8.339
-1.432
A
OP1
DC
6
ATOM
A
OP1
DC
1
6
1.00
1
O
16.22
-8.552
-6.772
-0.846
A
OP2
DC
6
ATOM
A
OP2
DC
1
6
1.00
1
O
11.49
-6.487
-6.720
0.467
A
O5'
DC
6
ATOM
A
O5'
DC
1
6
1.00
1
O
11.19
-5.131
-6.994
0.685
A
C5'
DC
6
ATOM
A
C5'
DC
1
6
1.00
1
C
9.75
-4.685
-6.411
2.006
A
C4'
DC
6
ATOM
A
C4'
DC
1
6
1.00
1
C
10.05
-4.710
-4.961
1.998
A
O4'
DC
6
ATOM
A
O4'
DC
1
6
1.00
1
O
9.78
-5.485
-6.830
3.233
A
C3'
DC
6
ATOM
A
C3'
DC
1
6
1.00
1
C
10.04
-4.699
-7.831
3.883
A
O3'
DC
6
ATOM
A
O3'
DC
1
6
1.00
1
O
11.14
-5.640
-5.535
4.040
A
C2'
DC
6
ATOM
A
C2'
DC
1
6
1.00
1
C
10.14
-4.715
-4.537
3.342
A
C1'
DC
6
ATOM
A
C1'
DC
1
6
1.00
1
C
9.37
-5.160
-3.112
3.364
A
N1
DC
6
ATOM
A
N1
DC
1
6
1.00
1
N
11.30
-4.251
-2.101
3.746
A
C2
DC
6
ATOM
A
C2
DC
1
6
1.00
1
C
11.29
-3.077
-2.401
4.026
A
O2
DC
6
ATOM
A
O2
DC
1
6
1.00
1
O
10.20
-4.671
-0.816
3.774
A
N3
DC
6
ATOM
A
N3
DC
1
6
1.00
1
N
9.74
-5.915
-0.503
3.413
A
C4
DC
6
ATOM
A
C4
DC
1
6
1.00
1
C
12.15
-6.265
0.781
3.454
A
N4
DC
6
ATOM
A
N4
DC
1
6
1.00
1
N
8.55
-6.850
-1.496
2.994
A
C5
DC
6
ATOM
A
C5
DC
1
6
1.00
1
C
9.90
-6.435
-2.785
3.000
A
C6
DC
6
ATOM
A
C6
DC
1
6
1.00
1
C
11.33
-5.210
-8.520
5.239
A
P
DA
7
ATOM
A
P
DA
1
7
1.00
1
P
13.44
-4.549
-9.868
5.247
A
OP1
DA
7
ATOM
A
OP1
DA
1
7
1.00
1
O
13.72
-6.660
-8.415
5.383
A
OP2
DA
7
ATOM
A
OP2
DA
1
7
1.00
1
O
9.71
-4.534
-7.626
6.363
A
O5'
DA
7
ATOM
A
O5'
DA
1
7
1.00
1
O
11.31
-3.139
-7.382
6.312
A
C5'
DA
7
ATOM
A
C5'
DA
1
7
1.00
1
C
11.03
-2.776
-6.279
7.270
A
C4'
DA
7
ATOM
A
C4'
DA
1
7
1.00
1
C
10.45
-3.456
-5.073
6.861
A
O4'
DA
7
ATOM
A
O4'
DA
1
7
1.00
1
O
11.17
-3.180
-6.527
8.725
A
C3'
DA
7
ATOM
A
C3'
DA
1
7
1.00
1
C
12.74
-1.993
-6.320
9.494
A
O3'
DA
7
ATOM
A
O3'
DA
1
7
1.00
1
O
10.58
-4.287
-5.504
8.976
A
C2'
DA
7
ATOM
A
C2'
DA
1
7
1.00
1
C
9.83
-3.979
-4.402
7.978
A
C1'
DA
7
ATOM
A
C1'
DA
1
7
1.00
1
C
9.27
-5.115
-3.613
7.497
A
N9
DA
7
ATOM
A
N9
DA
1
7
1.00
1
N
9.27
-6.305
-4.113
7.043
A
C8
DA
7
ATOM
A
C8
DA
1
7
1.00
1
C
9.99
-7.143
-3.193
6.617
A
N7
DA
7
ATOM
A
N7
DA
1
7
1.00
1
N
9.18
-6.466
-2.000
6.818
A
C5
DA
7
ATOM
A
C5
DA
1
7
1.00
1
C
10.49
-6.823
-0.667
6.588
A
C6
DA
7
ATOM
A
C6
DA
1
7
1.00
1
C
10.16
-8.015
-0.281
6.122
A
N6
DA
7
ATOM
A
N6
DA
1
7
1.00
1
N
10.90
-5.914
0.277
6.880
A
N1
DA
7
ATOM
A
N1
DA
1
7
1.00
1
N
12.47
-4.740
-0.086
7.389
A
C2
DA
7
ATOM
A
C2
DA
1
7
1.00
1
C
11.82
-4.289
-1.311
7.678
A
N3
DA
7
ATOM
A
N3
DA
1
7
1.00
1
N
10.54
-5.214
-2.237
7.367
A
C4
DA
7
ATOM
A
C4
DA
1
7
1.00
1
C
14.35
-1.956
-6.691
11.064
A
P
DC
8
ATOM
A
P
DC
1
8
1.00
1
P
16.60
-0.564
-7.108
11.259
A
OP1
DC
8
ATOM
A
OP1
DC
1
8
1.00
1
O
15.33
-3.071
-7.597
11.441
A
OP2
DC
8
ATOM
A
OP2
DC
1
8
1.00
1
O
12.03
-2.170
-5.280
11.747
A
O5'
DC
8
ATOM
A
O5'
DC
1
8
1.00
1
O
10.82
-1.223
-4.251
11.490
A
C5'
DC
8
ATOM
A
C5'
DC
1
8
1.00
1
C
12.24
-1.725
-2.921
11.996
A
C4'
DC
8
ATOM
A
C4'
DC
1
8
1.00
1
C
12.25
-2.834
-2.468
11.203
A
O4'
DC
8
ATOM
A
O4'
DC
1
8
1.00
1
O
13.94
-2.214
-2.938
13.445
A
C3'
DC
8
ATOM
A
C3'
DC
1
8
1.00
1
C
13.14
-1.380
-2.041
14.155
A
O3'
DC
8
ATOM
A
O3'
DC
1
8
1.00
1
O
13.92
-3.659
-2.470
13.375
A
C2'
DC
8
ATOM
A
C2'
DC
1
8
1.00
1
C
11.68
-3.724
-1.750
12.042
A
C1'
DC
8
ATOM
A
C1'
DC
1
8
1.00
1
C
12.45
-5.034
-1.791
11.391
A
N1
DC
8
ATOM
A
N1
DC
1
8
1.00
1
N
11.51
-5.607
-0.598
10.949
A
C2
DC
8
ATOM
A
C2
DC
1
8
1.00
1
C
13.22
-5.012
0.476
11.174
A
O2
DC
8
ATOM
A
O2
DC
1
8
1.00
1
O
9.75
-6.792
-0.639
10.298
A
N3
DC
8
ATOM
A
N3
DC
1
8
1.00
1
N
10.55
-7.403
-1.812
10.084
A
C4
DC
8
ATOM
A
C4
DC
1
8
1.00
1
C
9.55
-8.576
-1.806
9.432
A
N4
DC
8
ATOM
A
N4
DC
1
8
1.00
1
N
12.16
-6.846
-3.042
10.532
A
C5
DC
8
ATOM
A
C5
DC
1
8
1.00
1
C
10.06
-5.676
-2.984
11.186
A
C6
DC
8
ATOM
A
C6
DC
1
8
1.00
1
C
15.61
2.397
-1.373
5.854
A
C1
DMY
45
HETATM
B
C1
DMY
2
1.00
1
C
15.65
2.992
-1.999
6.739
A
O1
DMY
45
HETATM
B
O1
DMY
2
1.00
1
O
12.45
2.063
-1.798
4.613
A
N1
DMY
45
HETATM
B
N1
DMY
2
1.00
1
N
12.55
2.295
-3.034
4.080
A
C2
DMY
45
HETATM
B
C2
DMY
2
1.00
1
C
10.62
1.959
-3.432
2.785
A
C3
DMY
45
HETATM
B
C3
DMY
2
1.00
1
C
12.80
2.339
-4.769
2.595
A
C4
DMY
45
HETATM
B
C4
DMY
2
1.00
1
C
12.54
2.911
-5.197
3.766
A
N2
DMY
45
HETATM
B
N2
DMY
2
1.00
1
N
13.00
2.903
-4.185
4.662
A
C5
DMY
45
HETATM
B
C5
DMY
2
1.00
1
C
12.94
3.508
-6.560
4.137
A
C6
DMY
45
HETATM
B
C6
DMY
2
1.00
1
C
13.07
2.173
-5.601
1.399
A
C7
DMY
45
HETATM
B
C7
DMY
2
1.00
1
C
13.02
2.163
-6.870
1.462
A
O2
DMY
45
HETATM
B
O2
DMY
2
1.00
1
O
9.54
1.992
-4.893
0.233
A
N3
DMY
45
HETATM
B
N3
DMY
2
1.00
1
N
10.41
1.595
-5.467
-0.974
A
C8
DMY
45
HETATM
B
C8
DMY
2
1.00
1
C
10.26
1.374
-4.820
-2.193
A
C9
DMY
45
HETATM
B
C9
DMY
2
1.00
1
C
9.94
0.966
-5.743
-3.163
A
C10
DMY
45
HETATM
B
C10
DMY
2
1.00
1
C
10.70
0.938
-6.954
-2.577
A
N4
DMY
45
HETATM
B
N4
DMY
2
1.00
1
N
11.91
1.296
-6.827
-1.310
A
C11
DMY
45
HETATM
B
C11
DMY
2
1.00
1
C
12.38
0.563
-8.338
-3.108
A
C12
DMY
45
HETATM
B
C12
DMY
2
1.00
1
C
10.60
0.580
-5.463
-4.540
A
C13
DMY
45
HETATM
B
C13
DMY
2
1.00
1
C
12.10
-0.177
-6.245
-5.183
A
O3
DMY
45
HETATM
B
O3
DMY
2
1.00
1
O
11.25
1.015
-4.262
-5.007
A
N5
DMY
45
HETATM
B
N5
DMY
2
1.00
1
N
9.78
0.625
-3.690
-6.213
A
C14
DMY
45
HETATM
B
C14
DMY
2
1.00
1
C
11.29
1.061
-2.491
-6.744
A
C15
DMY
45
HETATM
B
C15
DMY
2
1.00
1
C
10.47
0.376
-2.253
-7.942
A
C16
DMY
45
HETATM
B
C16
DMY
2
1.00
1
C
12.11
-0.478
-3.295
-8.154
A
N6
DMY
45
HETATM
B
N6
DMY
2
1.00
1
N
11.32
-0.347
-4.156
-7.163
A
C17
DMY
45
HETATM
B
C17
DMY
2
1.00
1
C
13.21
-1.504
-3.574
-9.281
A
C18
DMY
45
HETATM
B
C18
DMY
2
1.00
1
C
11.55
0.489
-1.113
-8.812
A
C19
DMY
45
HETATM
B
C19
DMY
2
1.00
1
C
13.93
-0.455
-0.707
-9.506
A
O4
DMY
45
HETATM
B
O4
DMY
2
1.00
1
O
9.35
1.698
-0.483
-8.806
A
N7
DMY
45
HETATM
B
N7
DMY
2
1.00
1
N
11.34
1.907
0.698
-9.632
A
C20
DMY
45
HETATM
B
C20
DMY
2
1.00
1
C
10.70
1.386
1.955
-8.944
A
C21
DMY
45
HETATM
B
C21
DMY
2
1.00
1
C
10.65
1.548
3.188
-9.824
A
C22
DMY
45
HETATM
B
C22
DMY
2
1.00
1
C
14.61
0.561
3.480
-10.704
A
N8
DMY
45
HETATM
B
N8
DMY
2
1.00
1
N
13.36
2.633
3.955
-9.721
A
N9
DMY
45
HETATM
B
N9
DMY
2
1.00
1
N
18.90
-4.755
5.607
-3.145
A
O
HOH
9
HETATM
C
O
HOH
3
1.00
1
O
27.92
-2.269
1.095
-8.767
A
O
HOH
10
HETATM
C
O
HOH
3
1.00
1
O
32.05
12.297
3.388
-6.390
A
O
HOH
11
HETATM
C
O
HOH
3
1.00
1
O
15.96
4.734
5.273
-11.589
A
O
HOH
12
HETATM
C
O
HOH
3
1.00
1
O
20.02
6.728
9.069
-5.400
A
O
HOH
13
HETATM
C
O
HOH
3
1.00
1
O
22.44
-5.079
8.367
-6.678
A
O
HOH
14
HETATM
C
O
HOH
3
1.00
1
O
36.09
-9.740
-6.158
11.411
A
O
HOH
15
HETATM
C
O
HOH
3
1.00
1
O
25.50
-7.359
2.335
0.930
A
O
HOH
16
HETATM
C
O
HOH
3
1.00
1
O
38.51
13.635
5.967
-8.647
A
O
HOH
17
HETATM
C
O
HOH
3
1.00
1
O
28.49
-0.672
-8.447
-6.602
A
O
HOH
18
HETATM
C
O
HOH
3
1.00
1
O
21.75
-7.112
4.559
-1.661
A
O
HOH
19
HETATM
C
O
HOH
3
1.00
1
O
23.81
-7.663
-17.432
-2.420
A
O
HOH
20
HETATM
C
O
HOH
3
1.00
1
O
21.08
-7.713
5.489
-4.421
A
O
HOH
21
HETATM
C
O
HOH
3
1.00
1
O
19.85
4.145
5.713
-3.338
A
O
HOH
22
HETATM
C
O
HOH
3
1.00
1
O
36.21
-6.061
2.866
-10.242
A
O
HOH
23
HETATM
C
O
HOH
3
1.00
1
O
17.42
1.541
8.943
-11.028
A
O
HOH
24
HETATM
C
O
HOH
3
1.00
1
O
24.37
-7.649
-7.069
7.995
A
O
HOH
25
HETATM
C
O
HOH
3
1.00
1
O
20.17
-9.599
-4.637
8.913
A
O
HOH
26
HETATM
C
O
HOH
3
1.00
1
O
11.64
-7.211
0.115
-8.397
A
O
HOH
27
HETATM
C
O
HOH
3
1.00
1
O
19.79
2.267
-6.246
11.713
A
O
HOH
28
HETATM
C
O
HOH
3
1.00
1
O
28.53
-3.559
2.191
12.811
A
O
HOH
29
HETATM
C
O
HOH
3
1.00
1
O
24.78
2.440
5.946
-1.125
A
O
HOH
30
HETATM
C
O
HOH
3
1.00
1
O
38.96
3.073
0.851
15.993
A
O
HOH
31
HETATM
C
O
HOH
3
1.00
1
O
13.72
-10.115
1.137
-8.399
A
O
HOH
32
HETATM
C
O
HOH
3
1.00
1
O
12.79
-10.367
0.474
-5.445
A
O
HOH
33
HETATM
C
O
HOH
3
1.00
1
O
29.11
-5.507
-10.477
0.166
A
O
HOH
34
HETATM
C
O
HOH
3
1.00
1
O
33.59
-4.096
-10.517
2.323
A
O
HOH
35
HETATM
C
O
HOH
3
1.00
1
O
24.82
-1.346
-9.909
12.271
A
O
HOH
36
HETATM
C
O
HOH
3
1.00
1
O
25.66
-4.766
-0.660
-8.317
A
O
HOH
37
HETATM
C
O
HOH
3
1.00
1
O
13.23
-8.304
2.276
-6.504
A
O
HOH
38
HETATM
C
O
HOH
3
1.00
1
O
28.50
-8.702
2.712
-2.741
A
O
HOH
39
HETATM
C
O
HOH
3
1.00
1
O
28.19
16.109
4.003
-9.195
A
O
HOH
40
HETATM
C
O
HOH
3
1.00
1
O
29.41
5.766
4.300
-1.631
A
O
HOH
41
HETATM
C
O
HOH
3
1.00
1
O
27.77
2.880
-9.285
1.894
A
O
HOH
42
HETATM
C
O
HOH
3
1.00
1
O
35.28
3.875
0.083
13.345
A
O
HOH
43
HETATM
C
O
HOH
3
1.00
1
O
29.23
-10.031
3.691
-9.536
A
O
HOH
44
HETATM
C
O
HOH
3
1.00
1
O
0.030066
0.000000
0.020456
0.000000
0.039920
0.000000
0.000000
0.000000
0.042739
0.00000
0.00000
0.00000
Deng, J.
Pan, B.
Sundaralingam, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
124.23
90.00
33.260
25.050
28.300
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H13 N4 O7 P
332.207
y
2'-DEOXYINOSINE-5'-MONOPHOSPHATE
DNA linking
C22 H27 N9 O4
481.508
DISTAMYCIN A
DISTAMYCIN; STALLIMYCIN
non-polymer
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
Y
92
N
C
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
C
N
107
N
O
N
108
N
N
Y
109
N
C
Y
110
N
C
Y
111
N
C
Y
112
N
N
Y
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
N
Y
118
N
C
Y
119
N
C
Y
120
N
C
Y
121
N
N
Y
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
N
Y
127
N
C
Y
128
N
C
Y
129
N
C
Y
130
N
N
Y
131
N
C
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
N
N
136
N
C
N
137
N
C
N
138
N
C
N
139
N
N
N
140
N
N
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
O
N
169
N
P
N
170
N
O
N
171
N
O
N
172
N
O
N
173
N
C
N
174
R
C
N
175
N
O
N
176
S
C
N
177
N
O
N
178
N
C
N
179
R
C
N
180
N
N
N
181
N
C
N
182
N
O
N
183
N
N
N
184
N
C
N
185
N
O
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
O
N
205
N
H
N
206
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
Y
116
N
sing
Y
117
N
doub
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
Y
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
Y
132
N
sing
Y
133
N
doub
Y
134
N
doub
N
135
N
sing
Y
136
N
sing
N
137
N
sing
Y
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
Y
148
N
sing
Y
149
N
doub
Y
150
N
doub
N
151
N
sing
Y
152
N
sing
N
153
N
sing
Y
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
59
2342
2344
10.1107/S0907444903020730
14646114
Structure of d(ITITACAC) complexed with distamycin at 1.6 A resolution.
2003
10.2210/pdb1jux/pdb
pdb_00001jux
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
IMAGE PLATE
1997-06-20
RIGAKU RAXIS IIC
graphite
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
Octamer DNA
2396.589
5'-D(*IP*TP*IP*TP*AP*CP*AP*C)-3'
1
syn
polymer
481.508
DISTAMYCIN A
1
syn
non-polymer
18.015
water
36
nat
water
no
no
(DI)(DT)(DI)(DT)(DA)(DC)(DA)(DC)
ITITACAC
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
1
1.96
37.09
2.540
1
20
A
2
A
7
4.810
A_DT2:DA7_A
1
-5.610
0.065
-0.039
-0.144
1.901
1
20
A
4
A
5
-3.163
A_DT4:DA5_A
2
-14.770
0.047
0.048
-0.127
-1.902
1
20
A
5
A
4
-3.163
A_DA5:DT4_A
3
-14.770
-0.047
0.048
-0.127
-2.540
1
20
A
7
A
2
4.810
A_DA7:DT2_A
4
-5.610
-0.065
-0.039
-0.144
6.963
69.697
A
A
2
4
11.133
A
A
7
5
6.730
12.663
-1.846
1.458
AA_DT2DT4:DA5DA7_AA
1
-4.109
3.612
68.572
0.314
1.303
2.685
49.735
A
A
4
5
-12.310
A
A
5
4
3.362
-10.287
0.000
3.154
AA_DT4DA5:DT4DA5_AA
2
0.000
0.000
48.726
4.455
0.000
6.963
69.697
A
A
5
7
11.133
A
A
4
2
6.730
12.663
1.846
1.458
AA_DA5DA7:DT2DT4_AA
3
4.109
-3.612
68.572
0.314
-1.303
software
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2004-01-27
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
DNA octamer d(IUATATAC) and Distamycin
RCSB
Y
RCSB
2001-08-28
REL
REL
DMY
DISTAMYCIN A
HOH
water
DMA
45
2
DMY
DMY
45
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
34
3
HOH
HOH
34
A
HOH
35
3
HOH
HOH
35
A
HOH
36
3
HOH
HOH
36
A
HOH
37
3
HOH
HOH
37
A
HOH
38
3
HOH
HOH
38
A
HOH
39
3
HOH
HOH
39
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
HOH
42
3
HOH
HOH
42
A
HOH
43
3
HOH
HOH
43
A
HOH
44
3
HOH
HOH
44
A
INO
1
n
1
DI
1
A
THY
2
n
2
DT
2
A
INO
3
n
3
DI
3
A
THY
4
n
4
DT
4
A
ADE
5
n
5
DA
5
A
CYT
6
n
6
DC
6
A
ADE
7
n
7
DA
7
A
CYT
8
n
8
DC
8
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1
A
DI
3
0.064
SIDE CHAIN
1
A
DA
5
0.068
SIDE CHAIN
0.179
0.149
1.6
10
234
2609
2468
94.6
random
1
2
MOLECULAR REPLACEMENT
1.6
10
36
230
35
159
0
1.60
10.00
1JUX
2609
2468
2.000
1
phasing
AMoRE
refinement
CNS
1.6A Resolution Crystal Structures of the DNA Octamers d(IUATATAC) and d(ITITACAC):Binding of Two Distamycin Drugs Side-by-Side
1
N
N
2
N
N
3
N
N
One strand in the assymetric unit.
The duplex is generated by the
2 fold axis.
hydrog
WATSON-CRICK
A
DT
2
A
N3
DT
2
1_555
A
DA
7
A
N1
DA
7
2_555
hydrog
WATSON-CRICK
A
DT
2
A
O4
DT
2
1_555
A
DA
7
A
N6
DA
7
2_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
A
DA
5
A
N1
DA
5
2_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
A
DA
5
A
N6
DA
5
2_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
A
DT
4
A
N3
DT
4
2_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
A
DT
4
A
O4
DT
4
2_555
hydrog
WATSON-CRICK
A
DA
7
A
N1
DA
7
1_555
A
DT
2
A
N3
DT
2
2_555
hydrog
WATSON-CRICK
A
DA
7
A
N6
DA
7
1_555
A
DT
2
A
O4
DT
2
2_555
DNA
DNA, Octamer, Distamycin, Side-by-Side
1JUX
PDB
1
1JUX
1
8
1JUX
1
8
1JUX
A
1
1
8
BINDING SITE FOR RESIDUE DMY A 45
A
DMY
45
Software
13
A
DT
2
A
DT
2
13
1_555
A
DI
3
A
DI
3
13
1_555
A
DT
4
A
DT
4
13
2_555
A
DA
5
A
DA
5
13
2_555
A
DC
6
A
DC
6
13
2_555
A
DA
7
A
DA
7
13
2_555
A
DC
8
A
DC
8
13
3_454
A
DC
8
A
DC
8
13
2_555
A
HOH
10
C
HOH
13
1_555
A
HOH
18
C
HOH
13
1_555
A
HOH
36
C
HOH
13
3_454
A
HOH
37
C
HOH
13
2_555
A
HOH
42
C
HOH
13
1_555
5
C 1 2 1