0.019339 0.000000 0.000000 0.000000 0.017253 0.000000 0.000000 0.000000 0.011965 0.00000 0.00000 0.00000 Thomas, R. Patenaude, S.I. MacKenzie, C.R. To, R. Hirama, T. Young, N.M. Evans, S.V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90 90 90 51.71 57.96 83.58 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 277 2059 2064 10.1074/jbc.M104364200 11679577 Structure of an anti-blood group A Fv and improvement of its binding affinity without loss of specificity. 2002 DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 54 1456 1459 10.1107/S0907444998005824 Production, crystallization and diffraction to atomic resolution of an antibody Fv specific for the blood-group A oligosaccharide antigen 1998 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 300 1 DIFFRACTOMETER 1994-10-15 ENRAF-NONIUS FAST graphite SINGLE WAVELENGTH M x-ray 1 1.54 1.0 1.54 ROTATING ANODE ENRAF-NONIUS 11809.013 Ig kappa chain precursor V region anti-blood group A Fv 1 man polymer 12877.354 Ig chain heavy chain precursor V region 1 man polymer 18.015 water 62 nat water no no DIQMTQTTSSLSASLGDRVTISCRASQDINNYLNWYQQKPDGTVKLLIHYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQ EDIATYFCQQGNTLPWTFGGGTKLEIK DIQMTQTTSSLSASLGDRVTISCRASQDINNYLNWYQQKPDGTVKLLIHYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQ EDIATYFCQQGNTLPWTFGGGTKLEIK A polypeptide(L) no no QVQLQQPGAELVKPGTSVKLSCKASGYNFTSYWINWVKLRPGQGLEWIGDIYPGSGITNYNEKFKSKATLTVDTSSSTAY MQLSSLASEDSALYYCAGQYGNLWFAYWGQGTLVTVS QVQLQQPGAELVKPGTSVKLSCKASGYNFTSYWINWVKLRPGQGLEWIGDIYPGSGITNYNEKFKSKATLTVDTSSSTAY MQLSSLASEDSALYYCAGQYGNLWFAYWGQGTLVTVS B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli TG1 pUCE8 human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli TG1 pUCE8 1 2.54 51.50 VAPOR DIFFUSION, HANGING DROP 7.0 PEG 4000, HEPES, Calcium Chloride, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 300K 300 software diffrn_detector repository Initial release Version format compliance Version format compliance Refinement description Data collection 1 0 2002-01-09 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2018-04-18 _software.name _diffrn_detector.detector RCSB Y RCSB 2001-08-28 REL REL HOH water TIP 802 3 HOH HOH 802 A TIP 803 3 HOH HOH 803 A TIP 805 3 HOH HOH 805 A TIP 806 3 HOH HOH 806 A TIP 807 3 HOH HOH 807 A TIP 808 3 HOH HOH 808 A TIP 809 3 HOH HOH 809 A TIP 811 3 HOH HOH 811 A TIP 812 3 HOH HOH 812 A TIP 813 3 HOH HOH 813 A TIP 814 3 HOH HOH 814 A TIP 816 3 HOH HOH 816 A TIP 817 3 HOH HOH 817 A TIP 818 3 HOH HOH 818 A TIP 819 3 HOH HOH 819 A TIP 823 3 HOH HOH 823 A TIP 827 3 HOH HOH 827 A TIP 828 3 HOH HOH 828 A TIP 838 3 HOH HOH 838 A TIP 840 3 HOH HOH 840 A TIP 841 3 HOH HOH 841 A TIP 842 3 HOH HOH 842 A TIP 843 3 HOH HOH 843 A TIP 844 3 HOH HOH 844 A TIP 845 3 HOH HOH 845 A TIP 846 3 HOH HOH 846 A TIP 847 3 HOH HOH 847 A TIP 848 3 HOH HOH 848 A TIP 851 3 HOH HOH 851 A TIP 852 3 HOH HOH 852 A TIP 853 3 HOH HOH 853 A TIP 854 3 HOH HOH 854 A TIP 855 3 HOH HOH 855 A TIP 856 3 HOH HOH 856 A TIP 857 3 HOH HOH 857 A TIP 858 3 HOH HOH 858 A TIP 859 3 HOH HOH 859 A TIP 801 3 HOH HOH 801 B TIP 804 3 HOH HOH 804 B TIP 810 3 HOH HOH 810 B TIP 815 3 HOH HOH 815 B TIP 820 3 HOH HOH 820 B TIP 821 3 HOH HOH 821 B TIP 822 3 HOH HOH 822 B TIP 824 3 HOH HOH 824 B TIP 825 3 HOH HOH 825 B TIP 826 3 HOH HOH 826 B TIP 829 3 HOH HOH 829 B TIP 830 3 HOH HOH 830 B TIP 831 3 HOH HOH 831 B TIP 832 3 HOH HOH 832 B TIP 833 3 HOH HOH 833 B TIP 834 3 HOH HOH 834 B TIP 835 3 HOH HOH 835 B TIP 836 3 HOH HOH 836 B TIP 837 3 HOH HOH 837 B TIP 839 3 HOH HOH 839 B TIP 849 3 HOH HOH 849 B TIP 850 3 HOH HOH 850 B TIP 860 3 HOH HOH 860 B TIP 861 3 HOH HOH 861 B TIP 862 3 HOH HOH 862 B ASP 1 n 1 ASP 1 A ILE 2 n 2 ILE 2 A GLN 3 n 3 GLN 3 A MET 4 n 4 MET 4 A THR 5 n 5 THR 5 A GLN 6 n 6 GLN 6 A THR 7 n 7 THR 7 A THR 8 n 8 THR 8 A SER 9 n 9 SER 9 A SER 10 n 10 SER 10 A LEU 11 n 11 LEU 11 A SER 12 n 12 SER 12 A ALA 13 n 13 ALA 13 A SER 14 n 14 SER 14 A LEU 15 n 15 LEU 15 A GLY 16 n 16 GLY 16 A ASP 17 n 17 ASP 17 A ARG 18 n 18 ARG 18 A VAL 19 n 19 VAL 19 A THR 20 n 20 THR 20 A ILE 21 n 21 ILE 21 A SER 22 n 22 SER 22 A CYS 23 n 23 CYS 23 A ARG 24 n 24 ARG 24 A ALA 25 n 25 ALA 25 A SER 26 n 26 SER 26 A GLN 27 n 27 GLN 27 A ASP 28 n 28 ASP 28 A ILE 29 n 29 ILE 29 A ASN 30 n 30 ASN 30 A ASN 31 n 31 ASN 31 A TYR 32 n 32 TYR 32 A LEU 33 n 33 LEU 33 A ASN 34 n 34 ASN 34 A TRP 35 n 35 TRP 35 A TYR 36 n 36 TYR 36 A GLN 37 n 37 GLN 37 A GLN 38 n 38 GLN 38 A LYS 39 n 39 LYS 39 A PRO 40 n 40 PRO 40 A ASP 41 n 41 ASP 41 A GLY 42 n 42 GLY 42 A THR 43 n 43 THR 43 A VAL 44 n 44 VAL 44 A LYS 45 n 45 LYS 45 A LEU 46 n 46 LEU 46 A LEU 47 n 47 LEU 47 A ILE 48 n 48 ILE 48 A HIS 49 n 49 HIS 49 A TYR 50 n 50 TYR 50 A THR 51 n 51 THR 51 A SER 52 n 52 SER 52 A ARG 53 n 53 ARG 53 A LEU 54 n 54 LEU 54 A HIS 55 n 55 HIS 55 A SER 56 n 56 SER 56 A GLY 57 n 57 GLY 57 A VAL 58 n 58 VAL 58 A PRO 59 n 59 PRO 59 A SER 60 n 60 SER 60 A ARG 61 n 61 ARG 61 A PHE 62 n 62 PHE 62 A SER 63 n 63 SER 63 A GLY 64 n 64 GLY 64 A SER 65 n 65 SER 65 A GLY 66 n 66 GLY 66 A SER 67 n 67 SER 67 A GLY 68 n 68 GLY 68 A THR 69 n 69 THR 69 A ASP 70 n 70 ASP 70 A TYR 71 n 71 TYR 71 A SER 72 n 72 SER 72 A LEU 73 n 73 LEU 73 A THR 74 n 74 THR 74 A ILE 75 n 75 ILE 75 A SER 76 n 76 SER 76 A ASN 77 n 77 ASN 77 A LEU 78 n 78 LEU 78 A GLU 79 n 79 GLU 79 A GLN 80 n 80 GLN 80 A GLU 81 n 81 GLU 81 A ASP 82 n 82 ASP 82 A ILE 83 n 83 ILE 83 A ALA 84 n 84 ALA 84 A THR 85 n 85 THR 85 A TYR 86 n 86 TYR 86 A PHE 87 n 87 PHE 87 A CYS 88 n 88 CYS 88 A GLN 89 n 89 GLN 89 A GLN 90 n 90 GLN 90 A GLY 91 n 91 GLY 91 A ASN 92 n 92 ASN 92 A THR 93 n 93 THR 93 A LEU 94 n 94 LEU 94 A PRO 95 n 95 PRO 95 A TRP 96 n 96 TRP 96 A THR 97 n 97 THR 97 A PHE 98 n 98 PHE 98 A GLY 99 n 99 GLY 99 A GLY 100 n 100 GLY 100 A GLY 101 n 101 GLY 101 A THR 102 n 102 THR 102 A LYS 103 n 103 LYS 103 A LEU 104 n 104 LEU 104 A GLU 105 n 105 GLU 105 A ILE 106 n 106 ILE 106 A LYS 107 n 107 LYS 107 A GLN 301 n 1 GLN 301 B VAL 302 n 2 VAL 302 B GLN 303 n 3 GLN 303 B LEU 304 n 4 LEU 304 B GLN 305 n 5 GLN 305 B GLN 306 n 6 GLN 306 B PRO 307 n 7 PRO 307 B GLY 308 n 8 GLY 308 B ALA 309 n 9 ALA 309 B GLU 310 n 10 GLU 310 B LEU 311 n 11 LEU 311 B VAL 312 n 12 VAL 312 B LYS 313 n 13 LYS 313 B PRO 314 n 14 PRO 314 B GLY 315 n 15 GLY 315 B THR 316 n 16 THR 316 B SER 317 n 17 SER 317 B VAL 318 n 18 VAL 318 B LYS 319 n 19 LYS 319 B LEU 320 n 20 LEU 320 B SER 321 n 21 SER 321 B CYS 322 n 22 CYS 322 B LYS 323 n 23 LYS 323 B ALA 324 n 24 ALA 324 B SER 325 n 25 SER 325 B GLY 326 n 26 GLY 326 B TYR 327 n 27 TYR 327 B ASN 328 n 28 ASN 328 B PHE 329 n 29 PHE 329 B THR 330 n 30 THR 330 B SER 331 n 31 SER 331 B TYR 332 n 32 TYR 332 B TRP 333 n 33 TRP 333 B ILE 334 n 34 ILE 334 B ASN 335 n 35 ASN 335 B TRP 336 n 36 TRP 336 B VAL 337 n 37 VAL 337 B LYS 338 n 38 LYS 338 B LEU 339 n 39 LEU 339 B ARG 340 n 40 ARG 340 B PRO 341 n 41 PRO 341 B GLY 342 n 42 GLY 342 B GLN 343 n 43 GLN 343 B GLY 344 n 44 GLY 344 B LEU 345 n 45 LEU 345 B GLU 346 n 46 GLU 346 B TRP 347 n 47 TRP 347 B ILE 348 n 48 ILE 348 B GLY 349 n 49 GLY 349 B ASP 350 n 50 ASP 350 B ILE 351 n 51 ILE 351 B TYR 352 n 52 TYR 352 B PRO 353 n 53 PRO 353 B GLY 354 n 54 GLY 354 B SER 355 n 55 SER 355 B GLY 356 n 56 GLY 356 B ILE 357 n 57 ILE 357 B THR 358 n 58 THR 358 B ASN 359 n 59 ASN 359 B TYR 360 n 60 TYR 360 B ASN 361 n 61 ASN 361 B GLU 362 n 62 GLU 362 B LYS 363 n 63 LYS 363 B PHE 364 n 64 PHE 364 B LYS 365 n 65 LYS 365 B SER 366 n 66 SER 366 B LYS 367 n 67 LYS 367 B ALA 368 n 68 ALA 368 B THR 369 n 69 THR 369 B LEU 370 n 70 LEU 370 B THR 371 n 71 THR 371 B VAL 372 n 72 VAL 372 B ASP 373 n 73 ASP 373 B THR 374 n 74 THR 374 B SER 375 n 75 SER 375 B SER 376 n 76 SER 376 B SER 377 n 77 SER 377 B THR 378 n 78 THR 378 B ALA 379 n 79 ALA 379 B TYR 380 n 80 TYR 380 B MET 381 n 81 MET 381 B GLN 382 n 82 GLN 382 B LEU 383 n 83 LEU 383 B SER 384 n 84 SER 384 B SER 385 n 85 SER 385 B LEU 386 n 86 LEU 386 B ALA 387 n 87 ALA 387 B SER 388 n 88 SER 388 B GLU 389 n 89 GLU 389 B ASP 390 n 90 ASP 390 B SER 391 n 91 SER 391 B ALA 392 n 92 ALA 392 B LEU 393 n 93 LEU 393 B TYR 394 n 94 TYR 394 B TYR 395 n 95 TYR 395 B CYS 396 n 96 CYS 396 B ALA 397 n 97 ALA 397 B GLY 398 n 98 GLY 398 B GLN 399 n 99 GLN 399 B TYR 400 n 100 TYR 400 B GLY 401 n 101 GLY 401 B ASN 402 n 102 ASN 402 B LEU 403 n 103 LEU 403 B TRP 404 n 104 TRP 404 B PHE 405 n 105 PHE 405 B ALA 406 n 106 ALA 406 B TYR 407 n 107 TYR 407 B TRP 408 n 108 TRP 408 B GLY 409 n 109 GLY 409 B GLN 410 n 110 GLN 410 B GLY 411 n 111 GLY 411 B THR 412 n 112 THR 412 B LEU 413 n 113 LEU 413 B VAL 414 n 114 VAL 414 B THR 415 n 115 THR 415 B VAL 416 n 116 VAL 416 B SER 417 n 117 SER 417 B author_and_software_defined_assembly PISA 2 dimeric 1450 -10 10340 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 5 A N THR 5 A O ARG 24 A O ARG 24 A N CYS 23 A N CYS 23 A O TYR 71 A O TYR 71 A O THR 74 A O THR 74 A N SER 63 A N SER 63 A O ARG 53 A O ARG 53 A N HIS 49 A N HIS 49 A O LEU 47 A O LEU 47 A N TRP 35 A N TRP 35 A N TYR 36 A N TYR 36 A O PHE 87 A O PHE 87 A N GLN 90 A N GLN 90 A O THR 97 A O THR 97 A O ARG 53 A O ARG 53 A N HIS 49 A N HIS 49 A O LEU 47 A O LEU 47 A N TRP 35 A N TRP 35 A N TYR 36 A N TYR 36 A O PHE 87 A O PHE 87 A N TYR 86 A N TYR 86 A O THR 102 A O THR 102 A O LYS 103 A O LYS 103 A N LEU 11 A N LEU 11 B N GLN 305 B N GLN 5 B O LYS 323 B O LYS 23 B N CYS 322 B N CYS 22 B O ALA 379 B O ALA 79 B O TYR 380 B O TYR 80 B N THR 371 B N THR 71 B O TYR 407 B O TYR 107 B N GLY 398 B N GLY 98 B O ALA 397 B O ALA 97 B N ASN 335 B N ASN 35 B N TRP 336 B N TRP 36 B O ILE 348 B O ILE 48 B N ASP 350 B N ASP 50 B O ASN 359 B O ASN 59 B O TYR 407 B O TYR 107 B N GLY 398 B N GLY 98 B N ALA 392 B N ALA 92 B O VAL 414 B O VAL 114 B O THR 415 B O THR 115 B N VAL 312 B N VAL 12 1 A LEU 47 -100.71 -62.68 1 A THR 51 74.90 -51.57 1 A ALA 84 -171.18 -167.38 1 B SER 325 -105.35 -96.06 1 B GLU 362 -54.77 -6.33 1 B TYR 400 -172.77 137.03 0.223 0.183 0.243 0.183 2.2 6.0 1266 11626 9440 random 1 3.0 MOLECULAR REPLACEMENT Engh & Huber 2.2 6.0 186 2331 0 0 2145 0.006 1.412 0.256 0.203 3.21 59 674 71.8 2.2 20.0 1JV5 12350 12350 3.0 1.5 0.1 1 93.0 0.073 2.2 2.31 9.3 674 71.8 data collection CAD4 data reduction ROTAVATA phasing MERLOT refinement X-PLOR 3.1 data reduction CAD4 data scaling CCP4 (AGROVATA data scaling ROTAVATA Anti-blood group A Fv, PROTEIN (117-MER) Anti-blood group A Fv 1 N N 2 N N 3 N N 3 N N B ASN 328 B ASN 28 HELX_P B TYR 332 B TYR 32 5 2 5 B ALA 387 B ALA 87 HELX_P B SER 391 B SER 91 5 3 5 disulf 2.028 A CYS 23 A SG CYS 23 1_555 A CYS 88 A SG CYS 88 1_555 disulf 2.028 B CYS 322 B SG CYS 22 1_555 B CYS 396 B SG CYS 96 1_555 Immune System, Sugar Binding Protein immunoglobulin, Immune System, Sugar Binding Protein A LEU 94 A LEU 94 1 A PRO 95 A PRO 95 0.02 KV1B_HUMAN UNP 1 15 P01594 DIQMTQTTSSLSASLGDRVTISCRASQDINNYLNWYQQKPDGTVKLLIHYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQ EDIATYFCQQGNTLPWTFGGGTKLEIK E29380 GB 2 20 90683 QVQLQQPGAELVKPGTSVKLSCKASGYNFTSYWINWVKLRPGQGLEWIGDIYPGSGITNYNEKFKSKATLTVDTSSSTAY MQLSSLASEDSALYYCAGQYGNLWFAYWGQGTLVTVS 15 121 1JV5 1 107 P01594 A 1 1 107 20 136 1JV5 301 417 90683 B 2 1 117 4 5 6 4 5 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A MET 4 A MET 4 A THR 5 A THR 5 A VAL 19 A VAL 19 A ALA 25 A ALA 25 A ASP 70 A ASP 70 A ILE 75 A ILE 75 A PHE 62 A PHE 62 A SER 67 A SER 67 A ARG 53 A ARG 53 A LEU 54 A LEU 54 A VAL 44 A VAL 44 A HIS 49 A HIS 49 A LEU 33 A LEU 33 A GLN 38 A GLN 38 A THR 85 A THR 85 A GLN 90 A GLN 90 A THR 97 A THR 97 A PHE 98 A PHE 98 A ARG 53 A ARG 53 A LEU 54 A LEU 54 A VAL 44 A VAL 44 A HIS 49 A HIS 49 A LEU 33 A LEU 33 A GLN 38 A GLN 38 A THR 85 A THR 85 A GLN 90 A GLN 90 A THR 102 A THR 102 A ILE 106 A ILE 106 A SER 10 A SER 10 A ALA 13 A ALA 13 B LEU 304 B LEU 4 B GLN 305 B GLN 5 B VAL 318 B VAL 18 B ALA 324 B ALA 24 B THR 378 B THR 78 B LEU 383 B LEU 83 B ALA 368 B ALA 68 B ASP 373 B ASP 73 B LEU 403 B LEU 103 B TRP 408 B TRP 108 B ALA 392 B ALA 92 B TYR 400 B TYR 100 B ILE 334 B ILE 34 B LEU 339 B LEU 39 B LEU 345 B LEU 45 B ILE 351 B ILE 51 B THR 358 B THR 58 B TYR 360 B TYR 60 B LEU 403 B LEU 103 B TRP 408 B TRP 108 B ALA 392 B ALA 92 B TYR 400 B TYR 100 B THR 412 B THR 112 B VAL 416 B VAL 116 B ALA 309 B ALA 9 B VAL 312 B VAL 12 19 P 21 21 21