0.018142
0.000000
0.000000
0.000000
0.018142
0.000000
0.000000
0.000000
0.009478
0.00000
0.00000
0.00000
Shiba, T.
Takatsu, H.
Nogi, T.
Matsugaki, N.
Kawasaki, M.
Igarashi, N.
Suzuki, M.
Kato, R.
Earnest, T.
Nakayama, K.
Wakatsuki, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
55.120
55.120
105.513
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Nature
NATUAS
0006
0028-0836
415
937
941
10.1038/415937a
11859376
Structural basis for recognition of acidic-cluster dileucine sequence by GGA1.
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
IMAGE PLATE
2001-05-29
FUJI
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
BL-6B
Photon Factory
1.0
SYNCHROTRON
PHOTON FACTORY BEAMLINE BL-6B
16814.436
ADP-ribosylation factor binding protein GGA1
VHS DOMAIN(N-terminal domain)
1
man
polymer
18.015
water
34
nat
water
no
no
MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR
FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKS
MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR
FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
plasmid
pgex4t-2
1
2.38
48.36
VAPOR DIFFUSION, HANGING DROP
7.5
PEG 3350, potassium dihydrogen phosphate, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
audit_author
repository
Initial release
Version format compliance
Version format compliance
Data collection
Structure summary
1
0
2002-03-06
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-06-20
_audit_author.name
1JWG contains the same protein complexed with M6PR C-terminal Peptide.
RCSB
Y
PDBJ
2001-09-04
REL
HOH
water
HOH
1
2
HOH
HOH
148
A
HOH
2
2
HOH
HOH
149
A
HOH
3
2
HOH
HOH
150
A
HOH
4
2
HOH
HOH
151
A
HOH
5
2
HOH
HOH
152
A
HOH
6
2
HOH
HOH
153
A
HOH
7
2
HOH
HOH
154
A
HOH
8
2
HOH
HOH
155
A
HOH
9
2
HOH
HOH
156
A
HOH
10
2
HOH
HOH
157
A
HOH
11
2
HOH
HOH
158
A
HOH
12
2
HOH
HOH
159
A
HOH
13
2
HOH
HOH
160
A
HOH
14
2
HOH
HOH
161
A
HOH
15
2
HOH
HOH
162
A
HOH
16
2
HOH
HOH
163
A
HOH
17
2
HOH
HOH
164
A
HOH
18
2
HOH
HOH
165
A
HOH
19
2
HOH
HOH
166
A
HOH
20
2
HOH
HOH
167
A
HOH
21
2
HOH
HOH
168
A
HOH
22
2
HOH
HOH
169
A
HOH
23
2
HOH
HOH
170
A
HOH
24
2
HOH
HOH
171
A
HOH
25
2
HOH
HOH
172
A
HOH
26
2
HOH
HOH
173
A
HOH
27
2
HOH
HOH
174
A
HOH
28
2
HOH
HOH
175
A
HOH
29
2
HOH
HOH
176
A
HOH
30
2
HOH
HOH
177
A
HOH
31
2
HOH
HOH
178
A
HOH
32
2
HOH
HOH
179
A
HOH
33
2
HOH
HOH
180
A
HOH
34
2
HOH
HOH
181
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
PRO
7
n
7
PRO
7
A
GLU
8
n
8
GLU
8
A
THR
9
n
9
THR
9
A
LEU
10
n
10
LEU
10
A
GLU
11
n
11
GLU
11
A
ALA
12
n
12
ALA
12
A
ARG
13
n
13
ARG
13
A
ILE
14
n
14
ILE
14
A
ASN
15
n
15
ASN
15
A
ARG
16
n
16
ARG
16
A
ALA
17
n
17
ALA
17
A
THR
18
n
18
THR
18
A
ASN
19
n
19
ASN
19
A
PRO
20
n
20
PRO
20
A
LEU
21
n
21
LEU
21
A
ASN
22
n
22
ASN
22
A
LYS
23
n
23
LYS
23
A
GLU
24
n
24
GLU
24
A
LEU
25
n
25
LEU
25
A
ASP
26
n
26
ASP
26
A
TRP
27
n
27
TRP
27
A
ALA
28
n
28
ALA
28
A
SER
29
n
29
SER
29
A
ILE
30
n
30
ILE
30
A
ASN
31
n
31
ASN
31
A
GLY
32
n
32
GLY
32
A
PHE
33
n
33
PHE
33
A
CYS
34
n
34
CYS
34
A
GLU
35
n
35
GLU
35
A
GLN
36
n
36
GLN
36
A
LEU
37
n
37
LEU
37
A
ASN
38
n
38
ASN
38
A
GLU
39
n
39
GLU
39
A
ASP
40
n
40
ASP
40
A
PHE
41
n
41
PHE
41
A
GLU
42
n
42
GLU
42
A
GLY
43
n
43
GLY
43
A
PRO
44
n
44
PRO
44
A
PRO
45
n
45
PRO
45
A
LEU
46
n
46
LEU
46
A
ALA
47
n
47
ALA
47
A
THR
48
n
48
THR
48
A
ARG
49
n
49
ARG
49
A
LEU
50
n
50
LEU
50
A
LEU
51
n
51
LEU
51
A
ALA
52
n
52
ALA
52
A
HIS
53
n
53
HIS
53
A
LYS
54
n
54
LYS
54
A
ILE
55
n
55
ILE
55
A
GLN
56
n
56
GLN
56
A
SER
57
n
57
SER
57
A
PRO
58
n
58
PRO
58
A
GLN
59
n
59
GLN
59
A
GLU
60
n
60
GLU
60
A
TRP
61
n
61
TRP
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
ILE
64
n
64
ILE
64
A
GLN
65
n
65
GLN
65
A
ALA
66
n
66
ALA
66
A
LEU
67
n
67
LEU
67
A
THR
68
n
68
THR
68
A
VAL
69
n
69
VAL
69
A
LEU
70
n
70
LEU
70
A
GLU
71
n
71
GLU
71
A
THR
72
n
72
THR
72
A
CYS
73
n
73
CYS
73
A
MET
74
n
74
MET
74
A
LYS
75
n
75
LYS
75
A
SER
76
n
76
SER
76
A
CYS
77
n
77
CYS
77
A
GLY
78
n
78
GLY
78
A
LYS
79
n
79
LYS
79
A
ARG
80
n
80
ARG
80
A
PHE
81
n
81
PHE
81
A
HIS
82
n
82
HIS
82
A
ASP
83
n
83
ASP
83
A
GLU
84
n
84
GLU
84
A
VAL
85
n
85
VAL
85
A
GLY
86
n
86
GLY
86
A
LYS
87
n
87
LYS
87
A
PHE
88
n
88
PHE
88
A
ARG
89
n
89
ARG
89
A
PHE
90
n
90
PHE
90
A
LEU
91
n
91
LEU
91
A
ASN
92
n
92
ASN
92
A
GLU
93
n
93
GLU
93
A
LEU
94
n
94
LEU
94
A
ILE
95
n
95
ILE
95
A
LYS
96
n
96
LYS
96
A
VAL
97
n
97
VAL
97
A
VAL
98
n
98
VAL
98
A
SER
99
n
99
SER
99
A
PRO
100
n
100
PRO
100
A
LYS
101
n
101
LYS
101
A
TYR
102
n
102
TYR
102
A
LEU
103
n
103
LEU
103
A
GLY
104
n
104
GLY
104
A
SER
105
n
105
SER
105
A
ARG
106
n
106
ARG
106
A
THR
107
n
107
THR
107
A
SER
108
n
108
SER
108
A
GLU
109
n
109
GLU
109
A
LYS
110
n
110
LYS
110
A
VAL
111
n
111
VAL
111
A
LYS
112
n
112
LYS
112
A
ASN
113
n
113
ASN
113
A
LYS
114
n
114
LYS
114
A
ILE
115
n
115
ILE
115
A
LEU
116
n
116
LEU
116
A
GLU
117
n
117
GLU
117
A
LEU
118
n
118
LEU
118
A
LEU
119
n
119
LEU
119
A
TYR
120
n
120
TYR
120
A
SER
121
n
121
SER
121
A
TRP
122
n
122
TRP
122
A
THR
123
n
123
THR
123
A
VAL
124
n
124
VAL
124
A
GLY
125
n
125
GLY
125
A
LEU
126
n
126
LEU
126
A
PRO
127
n
127
PRO
127
A
GLU
128
n
128
GLU
128
A
GLU
129
n
129
GLU
129
A
VAL
130
n
130
VAL
130
A
LYS
131
n
131
LYS
131
A
ILE
132
n
132
ILE
132
A
ALA
133
n
133
ALA
133
A
GLU
134
n
134
GLU
134
A
ALA
135
n
135
ALA
135
A
TYR
136
n
136
TYR
136
A
GLN
137
n
137
GLN
137
A
MET
138
n
138
MET
138
A
LEU
139
n
139
LEU
139
A
LYS
140
n
140
LYS
140
A
LYS
141
n
141
LYS
141
A
GLN
142
n
142
GLN
142
A
GLY
143
n
143
GLY
143
A
ILE
144
n
144
ILE
144
A
VAL
145
n
145
VAL
145
A
n
146
146
A
n
147
147
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
MET
1
A
MET
1
1
Y
1
A
GLU
2
A
GLU
2
1
Y
1
A
PRO
3
A
PRO
3
1
Y
1
A
ALA
4
A
ALA
4
1
Y
1
A
MET
5
A
MET
5
1
Y
1
A
GLU
6
A
GLU
6
1
Y
1
A
LYS
146
A
LYS
146
1
Y
1
A
SER
147
A
SER
147
1
Y
1
6.69
0.90
118.30
124.99
A
A
A
CB
CG
OD2
ASP
ASP
ASP
40
40
40
N
1
A
LEU
25
-33.76
127.03
1
A
TYR
102
-112.92
-83.74
34.401
-0.23
0.00
0.00
-0.23
0.00
0.46
0.934
0.916
0.26137
0.22154
0.22337
0.22337
2.100
15.00
456
9057
9057
4.8
95.01
5.885
0.157
RANDOM
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
0.245
0.202
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.100
15.00
34
1151
0
0
1117
0.013
0.022
1140
1.557
1.971
1539
3.063
3.000
138
21.642
15.000
230
0.115
0.200
172
0.006
0.020
835
0.251
0.300
530
0.190
0.500
43
0.251
0.300
25
0.167
0.500
2
0.964
1.500
694
1.928
2.000
1122
3.097
3.000
446
5.275
4.500
417
0.319
0.244
2.153
36
565
20
6.3717
2.10
15.0
1JWF
9057
39125
1
95.6
2.100
2.170
89.4
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
REFMAC
5.0
ADP-ribosylation factor binding protein GGA1
Crystal Structure of human GGA1 VHS domain.
1
N
N
2
N
N
A
THR
9
A
THR
9
HELX_P
A
THR
18
A
THR
18
1
1
10
A
ASP
26
A
ASP
26
HELX_P
A
GLU
39
A
GLU
39
1
2
14
A
GLU
42
A
GLU
42
HELX_P
A
GLN
56
A
GLN
56
1
3
15
A
GLN
59
A
GLN
59
HELX_P
A
CYS
77
A
CYS
77
1
4
19
A
CYS
77
A
CYS
77
HELX_P
A
GLY
86
A
GLY
86
1
5
10
A
LYS
87
A
LYS
87
HELX_P
A
SER
99
A
SER
99
1
6
13
A
SER
108
A
SER
108
HELX_P
A
LEU
126
A
LEU
126
1
7
19
A
GLU
129
A
GLU
129
HELX_P
A
GLN
142
A
GLN
142
1
8
14
disulf
2.025
A
CYS
34
A
SG
CYS
34
1_555
A
CYS
73
A
SG
CYS
73
1_555
PROTEIN TRANSPORT
Super Helix, PROTEIN TRANSPORT
GGA1_HUMAN
UNP
1
1
Q9UJY5
MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR
FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKS
1
147
1JWF
1
147
Q9UJY5
A
1
1
147
96
P 43 21 2