0.018142 0.000000 0.000000 0.000000 0.018142 0.000000 0.000000 0.000000 0.009478 0.00000 0.00000 0.00000 Shiba, T. Takatsu, H. Nogi, T. Matsugaki, N. Kawasaki, M. Igarashi, N. Suzuki, M. Kato, R. Earnest, T. Nakayama, K. Wakatsuki, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 55.120 55.120 105.513 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nature NATUAS 0006 0028-0836 415 937 941 10.1038/415937a 11859376 Structural basis for recognition of acidic-cluster dileucine sequence by GGA1. 2002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 293 1 IMAGE PLATE 2001-05-29 FUJI Si(111) SINGLE WAVELENGTH M x-ray 1 1.0 1.0 BL-6B Photon Factory 1.0 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6B 16814.436 ADP-ribosylation factor binding protein GGA1 VHS DOMAIN(N-terminal domain) 1 man polymer 18.015 water 34 nat water no no MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKS MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli plasmid pgex4t-2 1 2.38 48.36 VAPOR DIFFUSION, HANGING DROP 7.5 PEG 3350, potassium dihydrogen phosphate, Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 audit_author repository Initial release Version format compliance Version format compliance Data collection Structure summary 1 0 2002-03-06 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-06-20 _audit_author.name 1JWG contains the same protein complexed with M6PR C-terminal Peptide. RCSB Y PDBJ 2001-09-04 REL HOH water HOH 1 2 HOH HOH 148 A HOH 2 2 HOH HOH 149 A HOH 3 2 HOH HOH 150 A HOH 4 2 HOH HOH 151 A HOH 5 2 HOH HOH 152 A HOH 6 2 HOH HOH 153 A HOH 7 2 HOH HOH 154 A HOH 8 2 HOH HOH 155 A HOH 9 2 HOH HOH 156 A HOH 10 2 HOH HOH 157 A HOH 11 2 HOH HOH 158 A HOH 12 2 HOH HOH 159 A HOH 13 2 HOH HOH 160 A HOH 14 2 HOH HOH 161 A HOH 15 2 HOH HOH 162 A HOH 16 2 HOH HOH 163 A HOH 17 2 HOH HOH 164 A HOH 18 2 HOH HOH 165 A HOH 19 2 HOH HOH 166 A HOH 20 2 HOH HOH 167 A HOH 21 2 HOH HOH 168 A HOH 22 2 HOH HOH 169 A HOH 23 2 HOH HOH 170 A HOH 24 2 HOH HOH 171 A HOH 25 2 HOH HOH 172 A HOH 26 2 HOH HOH 173 A HOH 27 2 HOH HOH 174 A HOH 28 2 HOH HOH 175 A HOH 29 2 HOH HOH 176 A HOH 30 2 HOH HOH 177 A HOH 31 2 HOH HOH 178 A HOH 32 2 HOH HOH 179 A HOH 33 2 HOH HOH 180 A HOH 34 2 HOH HOH 181 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A PRO 7 n 7 PRO 7 A GLU 8 n 8 GLU 8 A THR 9 n 9 THR 9 A LEU 10 n 10 LEU 10 A GLU 11 n 11 GLU 11 A ALA 12 n 12 ALA 12 A ARG 13 n 13 ARG 13 A ILE 14 n 14 ILE 14 A ASN 15 n 15 ASN 15 A ARG 16 n 16 ARG 16 A ALA 17 n 17 ALA 17 A THR 18 n 18 THR 18 A ASN 19 n 19 ASN 19 A PRO 20 n 20 PRO 20 A LEU 21 n 21 LEU 21 A ASN 22 n 22 ASN 22 A LYS 23 n 23 LYS 23 A GLU 24 n 24 GLU 24 A LEU 25 n 25 LEU 25 A ASP 26 n 26 ASP 26 A TRP 27 n 27 TRP 27 A ALA 28 n 28 ALA 28 A SER 29 n 29 SER 29 A ILE 30 n 30 ILE 30 A ASN 31 n 31 ASN 31 A GLY 32 n 32 GLY 32 A PHE 33 n 33 PHE 33 A CYS 34 n 34 CYS 34 A GLU 35 n 35 GLU 35 A GLN 36 n 36 GLN 36 A LEU 37 n 37 LEU 37 A ASN 38 n 38 ASN 38 A GLU 39 n 39 GLU 39 A ASP 40 n 40 ASP 40 A PHE 41 n 41 PHE 41 A GLU 42 n 42 GLU 42 A GLY 43 n 43 GLY 43 A PRO 44 n 44 PRO 44 A PRO 45 n 45 PRO 45 A LEU 46 n 46 LEU 46 A ALA 47 n 47 ALA 47 A THR 48 n 48 THR 48 A ARG 49 n 49 ARG 49 A LEU 50 n 50 LEU 50 A LEU 51 n 51 LEU 51 A ALA 52 n 52 ALA 52 A HIS 53 n 53 HIS 53 A LYS 54 n 54 LYS 54 A ILE 55 n 55 ILE 55 A GLN 56 n 56 GLN 56 A SER 57 n 57 SER 57 A PRO 58 n 58 PRO 58 A GLN 59 n 59 GLN 59 A GLU 60 n 60 GLU 60 A TRP 61 n 61 TRP 61 A GLU 62 n 62 GLU 62 A ALA 63 n 63 ALA 63 A ILE 64 n 64 ILE 64 A GLN 65 n 65 GLN 65 A ALA 66 n 66 ALA 66 A LEU 67 n 67 LEU 67 A THR 68 n 68 THR 68 A VAL 69 n 69 VAL 69 A LEU 70 n 70 LEU 70 A GLU 71 n 71 GLU 71 A THR 72 n 72 THR 72 A CYS 73 n 73 CYS 73 A MET 74 n 74 MET 74 A LYS 75 n 75 LYS 75 A SER 76 n 76 SER 76 A CYS 77 n 77 CYS 77 A GLY 78 n 78 GLY 78 A LYS 79 n 79 LYS 79 A ARG 80 n 80 ARG 80 A PHE 81 n 81 PHE 81 A HIS 82 n 82 HIS 82 A ASP 83 n 83 ASP 83 A GLU 84 n 84 GLU 84 A VAL 85 n 85 VAL 85 A GLY 86 n 86 GLY 86 A LYS 87 n 87 LYS 87 A PHE 88 n 88 PHE 88 A ARG 89 n 89 ARG 89 A PHE 90 n 90 PHE 90 A LEU 91 n 91 LEU 91 A ASN 92 n 92 ASN 92 A GLU 93 n 93 GLU 93 A LEU 94 n 94 LEU 94 A ILE 95 n 95 ILE 95 A LYS 96 n 96 LYS 96 A VAL 97 n 97 VAL 97 A VAL 98 n 98 VAL 98 A SER 99 n 99 SER 99 A PRO 100 n 100 PRO 100 A LYS 101 n 101 LYS 101 A TYR 102 n 102 TYR 102 A LEU 103 n 103 LEU 103 A GLY 104 n 104 GLY 104 A SER 105 n 105 SER 105 A ARG 106 n 106 ARG 106 A THR 107 n 107 THR 107 A SER 108 n 108 SER 108 A GLU 109 n 109 GLU 109 A LYS 110 n 110 LYS 110 A VAL 111 n 111 VAL 111 A LYS 112 n 112 LYS 112 A ASN 113 n 113 ASN 113 A LYS 114 n 114 LYS 114 A ILE 115 n 115 ILE 115 A LEU 116 n 116 LEU 116 A GLU 117 n 117 GLU 117 A LEU 118 n 118 LEU 118 A LEU 119 n 119 LEU 119 A TYR 120 n 120 TYR 120 A SER 121 n 121 SER 121 A TRP 122 n 122 TRP 122 A THR 123 n 123 THR 123 A VAL 124 n 124 VAL 124 A GLY 125 n 125 GLY 125 A LEU 126 n 126 LEU 126 A PRO 127 n 127 PRO 127 A GLU 128 n 128 GLU 128 A GLU 129 n 129 GLU 129 A VAL 130 n 130 VAL 130 A LYS 131 n 131 LYS 131 A ILE 132 n 132 ILE 132 A ALA 133 n 133 ALA 133 A GLU 134 n 134 GLU 134 A ALA 135 n 135 ALA 135 A TYR 136 n 136 TYR 136 A GLN 137 n 137 GLN 137 A MET 138 n 138 MET 138 A LEU 139 n 139 LEU 139 A LYS 140 n 140 LYS 140 A LYS 141 n 141 LYS 141 A GLN 142 n 142 GLN 142 A GLY 143 n 143 GLY 143 A ILE 144 n 144 ILE 144 A VAL 145 n 145 VAL 145 A n 146 146 A n 147 147 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A MET 1 A MET 1 1 Y 1 A GLU 2 A GLU 2 1 Y 1 A PRO 3 A PRO 3 1 Y 1 A ALA 4 A ALA 4 1 Y 1 A MET 5 A MET 5 1 Y 1 A GLU 6 A GLU 6 1 Y 1 A LYS 146 A LYS 146 1 Y 1 A SER 147 A SER 147 1 Y 1 6.69 0.90 118.30 124.99 A A A CB CG OD2 ASP ASP ASP 40 40 40 N 1 A LEU 25 -33.76 127.03 1 A TYR 102 -112.92 -83.74 34.401 -0.23 0.00 0.00 -0.23 0.00 0.46 0.934 0.916 0.26137 0.22154 0.22337 0.22337 2.100 15.00 456 9057 9057 4.8 95.01 5.885 0.157 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT 0.245 0.202 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.100 15.00 34 1151 0 0 1117 0.013 0.022 1140 1.557 1.971 1539 3.063 3.000 138 21.642 15.000 230 0.115 0.200 172 0.006 0.020 835 0.251 0.300 530 0.190 0.500 43 0.251 0.300 25 0.167 0.500 2 0.964 1.500 694 1.928 2.000 1122 3.097 3.000 446 5.275 4.500 417 0.319 0.244 2.153 36 565 20 6.3717 2.10 15.0 1JWF 9057 39125 1 95.6 2.100 2.170 89.4 data reduction DENZO data scaling SCALEPACK phasing AMoRE refinement REFMAC 5.0 ADP-ribosylation factor binding protein GGA1 Crystal Structure of human GGA1 VHS domain. 1 N N 2 N N A THR 9 A THR 9 HELX_P A THR 18 A THR 18 1 1 10 A ASP 26 A ASP 26 HELX_P A GLU 39 A GLU 39 1 2 14 A GLU 42 A GLU 42 HELX_P A GLN 56 A GLN 56 1 3 15 A GLN 59 A GLN 59 HELX_P A CYS 77 A CYS 77 1 4 19 A CYS 77 A CYS 77 HELX_P A GLY 86 A GLY 86 1 5 10 A LYS 87 A LYS 87 HELX_P A SER 99 A SER 99 1 6 13 A SER 108 A SER 108 HELX_P A LEU 126 A LEU 126 1 7 19 A GLU 129 A GLU 129 HELX_P A GLN 142 A GLN 142 1 8 14 disulf 2.025 A CYS 34 A SG CYS 34 1_555 A CYS 73 A SG CYS 73 1_555 PROTEIN TRANSPORT Super Helix, PROTEIN TRANSPORT GGA1_HUMAN UNP 1 1 Q9UJY5 MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEEVKIAEAYQMLKKQGIVKS 1 147 1JWF 1 147 Q9UJY5 A 1 1 147 96 P 43 21 2