0.017803
0.000000
0.000000
0.000000
0.016399
0.000000
0.000000
0.000000
0.030148
0.00000
0.00000
0.00000
Higo, J.
Nakasako, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.0
90.0
90.0
56.17
60.98
33.17
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
J.Comput.Chem.
JCCHDD
0913
0192-8651
23
1323
1336
10.1002/jcc.10100
12214315
Hydration structure of human lysozyme investigated by molecular dynamics simulation and cryogenic X-ray crystal structure analyses: on the correlation between crystal water sites, solvent density, and solvent dipole
2002
10.2210/pdb1jwr/pdb
pdb_00001jwr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
double-focusing Pt-coated mirrors
IMAGE PLATE
1998-01-01
RIGAKU RAXIS IV
Ni filter
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU ULTRAX 18H
14720.693
lysozyme
3.2.1.17
1
man
polymer
18.015
water
307
nat
water
1,4-BETA-N-ACETYLMURAMIDASE C
no
no
KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
1
1.93
36.24
VAPOR DIFFUSION, HANGING DROP
4.5
NaCl, sodium acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
2001-09-19
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-10-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
1REX contains same protein
RCSB
Y
PDBJ
2001-09-05
REL
HOH
water
1REX
PDB entry 1rex
PDB
experimental model
H2O
200
2
HOH
HOH
200
A
H2O
201
2
HOH
HOH
201
A
H2O
202
2
HOH
HOH
202
A
H2O
203
2
HOH
HOH
203
A
H2O
204
2
HOH
HOH
204
A
H2O
205
2
HOH
HOH
205
A
H2O
206
2
HOH
HOH
206
A
H2O
208
2
HOH
HOH
208
A
H2O
209
2
HOH
HOH
209
A
H2O
210
2
HOH
HOH
210
A
H2O
211
2
HOH
HOH
211
A
H2O
212
2
HOH
HOH
212
A
H2O
213
2
HOH
HOH
213
A
H2O
214
2
HOH
HOH
214
A
H2O
215
2
HOH
HOH
215
A
H2O
216
2
HOH
HOH
216
A
H2O
217
2
HOH
HOH
217
A
H2O
218
2
HOH
HOH
218
A
H2O
219
2
HOH
HOH
219
A
H2O
220
2
HOH
HOH
220
A
H2O
221
2
HOH
HOH
221
A
H2O
222
2
HOH
HOH
222
A
H2O
223
2
HOH
HOH
223
A
H2O
224
2
HOH
HOH
224
A
H2O
225
2
HOH
HOH
225
A
H2O
226
2
HOH
HOH
226
A
H2O
227
2
HOH
HOH
227
A
H2O
228
2
HOH
HOH
228
A
H2O
229
2
HOH
HOH
229
A
H2O
230
2
HOH
HOH
230
A
H2O
231
2
HOH
HOH
231
A
H2O
232
2
HOH
HOH
232
A
H2O
233
2
HOH
HOH
233
A
H2O
234
2
HOH
HOH
234
A
H2O
235
2
HOH
HOH
235
A
H2O
237
2
HOH
HOH
237
A
H2O
238
2
HOH
HOH
238
A
H2O
239
2
HOH
HOH
239
A
H2O
240
2
HOH
HOH
240
A
H2O
241
2
HOH
HOH
241
A
H2O
242
2
HOH
HOH
242
A
H2O
243
2
HOH
HOH
243
A
H2O
244
2
HOH
HOH
244
A
H2O
245
2
HOH
HOH
245
A
H2O
246
2
HOH
HOH
246
A
H2O
247
2
HOH
HOH
247
A
H2O
248
2
HOH
HOH
248
A
H2O
249
2
HOH
HOH
249
A
H2O
250
2
HOH
HOH
250
A
H2O
251
2
HOH
HOH
251
A
H2O
253
2
HOH
HOH
253
A
H2O
254
2
HOH
HOH
254
A
H2O
255
2
HOH
HOH
255
A
H2O
256
2
HOH
HOH
256
A
H2O
257
2
HOH
HOH
257
A
H2O
258
2
HOH
HOH
258
A
H2O
259
2
HOH
HOH
259
A
H2O
260
2
HOH
HOH
260
A
H2O
261
2
HOH
HOH
261
A
H2O
262
2
HOH
HOH
262
A
H2O
263
2
HOH
HOH
263
A
H2O
264
2
HOH
HOH
264
A
H2O
265
2
HOH
HOH
265
A
H2O
266
2
HOH
HOH
266
A
H2O
267
2
HOH
HOH
267
A
H2O
268
2
HOH
HOH
268
A
H2O
269
2
HOH
HOH
269
A
H2O
270
2
HOH
HOH
270
A
H2O
271
2
HOH
HOH
271
A
H2O
272
2
HOH
HOH
272
A
H2O
273
2
HOH
HOH
273
A
H2O
274
2
HOH
HOH
274
A
H2O
275
2
HOH
HOH
275
A
H2O
276
2
HOH
HOH
276
A
H2O
277
2
HOH
HOH
277
A
H2O
278
2
HOH
HOH
278
A
H2O
279
2
HOH
HOH
279
A
H2O
280
2
HOH
HOH
280
A
H2O
281
2
HOH
HOH
281
A
H2O
282
2
HOH
HOH
282
A
H2O
283
2
HOH
HOH
283
A
H2O
284
2
HOH
HOH
284
A
H2O
285
2
HOH
HOH
285
A
H2O
286
2
HOH
HOH
286
A
H2O
287
2
HOH
HOH
287
A
H2O
288
2
HOH
HOH
288
A
H2O
289
2
HOH
HOH
289
A
H2O
290
2
HOH
HOH
290
A
H2O
291
2
HOH
HOH
291
A
H2O
292
2
HOH
HOH
292
A
H2O
293
2
HOH
HOH
293
A
H2O
294
2
HOH
HOH
294
A
H2O
295
2
HOH
HOH
295
A
H2O
296
2
HOH
HOH
296
A
H2O
297
2
HOH
HOH
297
A
H2O
298
2
HOH
HOH
298
A
H2O
299
2
HOH
HOH
299
A
H2O
300
2
HOH
HOH
300
A
H2O
301
2
HOH
HOH
301
A
H2O
302
2
HOH
HOH
302
A
H2O
303
2
HOH
HOH
303
A
H2O
304
2
HOH
HOH
304
A
H2O
305
2
HOH
HOH
305
A
H2O
306
2
HOH
HOH
306
A
H2O
307
2
HOH
HOH
307
A
H2O
308
2
HOH
HOH
308
A
H2O
309
2
HOH
HOH
309
A
H2O
310
2
HOH
HOH
310
A
H2O
311
2
HOH
HOH
311
A
H2O
312
2
HOH
HOH
312
A
H2O
313
2
HOH
HOH
313
A
H2O
314
2
HOH
HOH
314
A
H2O
315
2
HOH
HOH
315
A
H2O
316
2
HOH
HOH
316
A
H2O
317
2
HOH
HOH
317
A
H2O
318
2
HOH
HOH
318
A
H2O
319
2
HOH
HOH
319
A
H2O
320
2
HOH
HOH
320
A
H2O
321
2
HOH
HOH
321
A
H2O
322
2
HOH
HOH
322
A
H2O
323
2
HOH
HOH
323
A
H2O
324
2
HOH
HOH
324
A
H2O
325
2
HOH
HOH
325
A
H2O
326
2
HOH
HOH
326
A
H2O
327
2
HOH
HOH
327
A
H2O
328
2
HOH
HOH
328
A
H2O
329
2
HOH
HOH
329
A
H2O
330
2
HOH
HOH
330
A
H2O
331
2
HOH
HOH
331
A
H2O
332
2
HOH
HOH
332
A
H2O
333
2
HOH
HOH
333
A
H2O
334
2
HOH
HOH
334
A
H2O
335
2
HOH
HOH
335
A
H2O
336
2
HOH
HOH
336
A
H2O
337
2
HOH
HOH
337
A
H2O
338
2
HOH
HOH
338
A
H2O
339
2
HOH
HOH
339
A
H2O
340
2
HOH
HOH
340
A
H2O
341
2
HOH
HOH
341
A
H2O
342
2
HOH
HOH
342
A
H2O
343
2
HOH
HOH
343
A
H2O
344
2
HOH
HOH
344
A
H2O
345
2
HOH
HOH
345
A
H2O
346
2
HOH
HOH
346
A
H2O
347
2
HOH
HOH
347
A
H2O
348
2
HOH
HOH
348
A
H2O
349
2
HOH
HOH
349
A
H2O
350
2
HOH
HOH
350
A
H2O
351
2
HOH
HOH
351
A
H2O
352
2
HOH
HOH
352
A
H2O
353
2
HOH
HOH
353
A
H2O
354
2
HOH
HOH
354
A
H2O
355
2
HOH
HOH
355
A
H2O
356
2
HOH
HOH
356
A
H2O
357
2
HOH
HOH
357
A
H2O
358
2
HOH
HOH
358
A
H2O
359
2
HOH
HOH
359
A
H2O
360
2
HOH
HOH
360
A
H2O
361
2
HOH
HOH
361
A
H2O
362
2
HOH
HOH
362
A
H2O
363
2
HOH
HOH
363
A
H2O
364
2
HOH
HOH
364
A
H2O
365
2
HOH
HOH
365
A
H2O
366
2
HOH
HOH
366
A
H2O
367
2
HOH
HOH
367
A
H2O
368
2
HOH
HOH
368
A
H2O
369
2
HOH
HOH
369
A
H2O
370
2
HOH
HOH
370
A
H2O
371
2
HOH
HOH
371
A
H2O
372
2
HOH
HOH
372
A
H2O
373
2
HOH
HOH
373
A
H2O
374
2
HOH
HOH
374
A
H2O
375
2
HOH
HOH
375
A
H2O
376
2
HOH
HOH
376
A
H2O
377
2
HOH
HOH
377
A
H2O
378
2
HOH
HOH
378
A
H2O
379
2
HOH
HOH
379
A
H2O
380
2
HOH
HOH
380
A
H2O
381
2
HOH
HOH
381
A
H2O
382
2
HOH
HOH
382
A
H2O
383
2
HOH
HOH
383
A
H2O
384
2
HOH
HOH
384
A
H2O
385
2
HOH
HOH
385
A
H2O
386
2
HOH
HOH
386
A
H2O
387
2
HOH
HOH
387
A
H2O
389
2
HOH
HOH
389
A
H2O
390
2
HOH
HOH
390
A
H2O
391
2
HOH
HOH
391
A
H2O
392
2
HOH
HOH
392
A
H2O
393
2
HOH
HOH
393
A
H2O
394
2
HOH
HOH
394
A
H2O
395
2
HOH
HOH
395
A
H2O
396
2
HOH
HOH
396
A
H2O
397
2
HOH
HOH
397
A
H2O
398
2
HOH
HOH
398
A
H2O
399
2
HOH
HOH
399
A
H2O
400
2
HOH
HOH
400
A
H2O
402
2
HOH
HOH
402
A
H2O
403
2
HOH
HOH
403
A
H2O
404
2
HOH
HOH
404
A
H2O
405
2
HOH
HOH
405
A
H2O
406
2
HOH
HOH
406
A
H2O
407
2
HOH
HOH
407
A
H2O
408
2
HOH
HOH
408
A
H2O
409
2
HOH
HOH
409
A
H2O
410
2
HOH
HOH
410
A
H2O
411
2
HOH
HOH
411
A
H2O
412
2
HOH
HOH
412
A
H2O
413
2
HOH
HOH
413
A
H2O
414
2
HOH
HOH
414
A
H2O
416
2
HOH
HOH
416
A
H2O
417
2
HOH
HOH
417
A
H2O
418
2
HOH
HOH
418
A
H2O
419
2
HOH
HOH
419
A
H2O
420
2
HOH
HOH
420
A
H2O
421
2
HOH
HOH
421
A
H2O
422
2
HOH
HOH
422
A
H2O
423
2
HOH
HOH
423
A
H2O
424
2
HOH
HOH
424
A
H2O
425
2
HOH
HOH
425
A
H2O
426
2
HOH
HOH
426
A
H2O
427
2
HOH
HOH
427
A
H2O
428
2
HOH
HOH
428
A
H2O
429
2
HOH
HOH
429
A
H2O
430
2
HOH
HOH
430
A
H2O
431
2
HOH
HOH
431
A
H2O
432
2
HOH
HOH
432
A
H2O
434
2
HOH
HOH
434
A
H2O
435
2
HOH
HOH
435
A
H2O
436
2
HOH
HOH
436
A
H2O
437
2
HOH
HOH
437
A
H2O
438
2
HOH
HOH
438
A
H2O
439
2
HOH
HOH
439
A
H2O
440
2
HOH
HOH
440
A
H2O
441
2
HOH
HOH
441
A
H2O
442
2
HOH
HOH
442
A
H2O
444
2
HOH
HOH
444
A
H2O
445
2
HOH
HOH
445
A
H2O
446
2
HOH
HOH
446
A
H2O
448
2
HOH
HOH
448
A
H2O
449
2
HOH
HOH
449
A
H2O
450
2
HOH
HOH
450
A
H2O
451
2
HOH
HOH
451
A
H2O
452
2
HOH
HOH
452
A
H2O
453
2
HOH
HOH
453
A
H2O
454
2
HOH
HOH
454
A
H2O
455
2
HOH
HOH
455
A
H2O
456
2
HOH
HOH
456
A
H2O
457
2
HOH
HOH
457
A
H2O
458
2
HOH
HOH
458
A
H2O
460
2
HOH
HOH
460
A
H2O
461
2
HOH
HOH
461
A
H2O
462
2
HOH
HOH
462
A
H2O
463
2
HOH
HOH
463
A
H2O
465
2
HOH
HOH
465
A
H2O
466
2
HOH
HOH
466
A
H2O
467
2
HOH
HOH
467
A
H2O
468
2
HOH
HOH
468
A
H2O
469
2
HOH
HOH
469
A
H2O
470
2
HOH
HOH
470
A
H2O
471
2
HOH
HOH
471
A
H2O
472
2
HOH
HOH
472
A
H2O
473
2
HOH
HOH
473
A
H2O
474
2
HOH
HOH
474
A
H2O
475
2
HOH
HOH
475
A
H2O
476
2
HOH
HOH
476
A
H2O
477
2
HOH
HOH
477
A
H2O
478
2
HOH
HOH
478
A
H2O
479
2
HOH
HOH
479
A
H2O
480
2
HOH
HOH
480
A
H2O
482
2
HOH
HOH
482
A
H2O
483
2
HOH
HOH
483
A
H2O
484
2
HOH
HOH
484
A
H2O
485
2
HOH
HOH
485
A
H2O
487
2
HOH
HOH
487
A
H2O
488
2
HOH
HOH
488
A
H2O
489
2
HOH
HOH
489
A
H2O
490
2
HOH
HOH
490
A
H2O
491
2
HOH
HOH
491
A
H2O
492
2
HOH
HOH
492
A
H2O
493
2
HOH
HOH
493
A
H2O
494
2
HOH
HOH
494
A
H2O
495
2
HOH
HOH
495
A
H2O
497
2
HOH
HOH
497
A
H2O
498
2
HOH
HOH
498
A
H2O
499
2
HOH
HOH
499
A
H2O
500
2
HOH
HOH
500
A
H2O
501
2
HOH
HOH
501
A
H2O
502
2
HOH
HOH
502
A
H2O
503
2
HOH
HOH
503
A
H2O
504
2
HOH
HOH
504
A
H2O
505
2
HOH
HOH
505
A
H2O
506
2
HOH
HOH
506
A
H2O
507
2
HOH
HOH
507
A
H2O
508
2
HOH
HOH
508
A
H2O
509
2
HOH
HOH
509
A
H2O
510
2
HOH
HOH
510
A
H2O
511
2
HOH
HOH
511
A
H2O
512
2
HOH
HOH
512
A
H2O
513
2
HOH
HOH
513
A
H2O
514
2
HOH
HOH
514
A
H2O
516
2
HOH
HOH
516
A
H2O
517
2
HOH
HOH
517
A
H2O
518
2
HOH
HOH
518
A
H2O
519
2
HOH
HOH
519
A
H2O
522
2
HOH
HOH
522
A
H2O
523
2
HOH
HOH
523
A
LYS
1
n
1
LYS
1
A
VAL
2
n
2
VAL
2
A
PHE
3
n
3
PHE
3
A
GLU
4
n
4
GLU
4
A
ARG
5
n
5
ARG
5
A
CYS
6
n
6
CYS
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
ALA
9
n
9
ALA
9
A
ARG
10
n
10
ARG
10
A
THR
11
n
11
THR
11
A
LEU
12
n
12
LEU
12
A
LYS
13
n
13
LYS
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
MET
17
n
17
MET
17
A
ASP
18
n
18
ASP
18
A
GLY
19
n
19
GLY
19
A
TYR
20
n
20
TYR
20
A
ARG
21
n
21
ARG
21
A
GLY
22
n
22
GLY
22
A
ILE
23
n
23
ILE
23
A
SER
24
n
24
SER
24
A
LEU
25
n
25
LEU
25
A
ALA
26
n
26
ALA
26
A
ASN
27
n
27
ASN
27
A
TRP
28
n
28
TRP
28
A
MET
29
n
29
MET
29
A
CYS
30
n
30
CYS
30
A
LEU
31
n
31
LEU
31
A
ALA
32
n
32
ALA
32
A
LYS
33
n
33
LYS
33
A
TRP
34
n
34
TRP
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
GLY
37
n
37
GLY
37
A
TYR
38
n
38
TYR
38
A
ASN
39
n
39
ASN
39
A
THR
40
n
40
THR
40
A
ARG
41
n
41
ARG
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
TYR
45
n
45
TYR
45
A
ASN
46
n
46
ASN
46
A
ALA
47
n
47
ALA
47
A
GLY
48
n
48
GLY
48
A
ASP
49
n
49
ASP
49
A
ARG
50
n
50
ARG
50
A
SER
51
n
51
SER
51
A
THR
52
n
52
THR
52
A
ASP
53
n
53
ASP
53
A
TYR
54
n
54
TYR
54
A
GLY
55
n
55
GLY
55
A
ILE
56
n
56
ILE
56
A
PHE
57
n
57
PHE
57
A
GLN
58
n
58
GLN
58
A
ILE
59
n
59
ILE
59
A
ASN
60
n
60
ASN
60
A
SER
61
n
61
SER
61
A
ARG
62
n
62
ARG
62
A
TYR
63
n
63
TYR
63
A
TRP
64
n
64
TRP
64
A
CYS
65
n
65
CYS
65
A
ASN
66
n
66
ASN
66
A
ASP
67
n
67
ASP
67
A
GLY
68
n
68
GLY
68
A
LYS
69
n
69
LYS
69
A
THR
70
n
70
THR
70
A
PRO
71
n
71
PRO
71
A
GLY
72
n
72
GLY
72
A
ALA
73
n
73
ALA
73
A
VAL
74
n
74
VAL
74
A
ASN
75
n
75
ASN
75
A
ALA
76
n
76
ALA
76
A
CYS
77
n
77
CYS
77
A
HIS
78
n
78
HIS
78
A
LEU
79
n
79
LEU
79
A
SER
80
n
80
SER
80
A
CYS
81
n
81
CYS
81
A
SER
82
n
82
SER
82
A
ALA
83
n
83
ALA
83
A
LEU
84
n
84
LEU
84
A
LEU
85
n
85
LEU
85
A
GLN
86
n
86
GLN
86
A
ASP
87
n
87
ASP
87
A
ASN
88
n
88
ASN
88
A
ILE
89
n
89
ILE
89
A
ALA
90
n
90
ALA
90
A
ASP
91
n
91
ASP
91
A
ALA
92
n
92
ALA
92
A
VAL
93
n
93
VAL
93
A
ALA
94
n
94
ALA
94
A
CYS
95
n
95
CYS
95
A
ALA
96
n
96
ALA
96
A
LYS
97
n
97
LYS
97
A
ARG
98
n
98
ARG
98
A
VAL
99
n
99
VAL
99
A
VAL
100
n
100
VAL
100
A
ARG
101
n
101
ARG
101
A
ASP
102
n
102
ASP
102
A
PRO
103
n
103
PRO
103
A
GLN
104
n
104
GLN
104
A
GLY
105
n
105
GLY
105
A
ILE
106
n
106
ILE
106
A
ARG
107
n
107
ARG
107
A
ALA
108
n
108
ALA
108
A
TRP
109
n
109
TRP
109
A
VAL
110
n
110
VAL
110
A
ALA
111
n
111
ALA
111
A
TRP
112
n
112
TRP
112
A
ARG
113
n
113
ARG
113
A
ASN
114
n
114
ASN
114
A
ARG
115
n
115
ARG
115
A
CYS
116
n
116
CYS
116
A
GLN
117
n
117
GLN
117
A
ASN
118
n
118
ASN
118
A
ARG
119
n
119
ARG
119
A
ASP
120
n
120
ASP
120
A
VAL
121
n
121
VAL
121
A
ARG
122
n
122
ARG
122
A
GLN
123
n
123
GLN
123
A
TYR
124
n
124
TYR
124
A
VAL
125
n
125
VAL
125
A
GLN
126
n
126
GLN
126
A
GLY
127
n
127
GLY
127
A
CYS
128
n
128
CYS
128
A
GLY
129
n
129
GLY
129
A
VAL
130
n
130
VAL
130
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASN
44
A
N
ASN
44
A
O
ASP
53
A
O
ASP
53
A
N
TYR
54
A
N
TYR
54
A
O
ILE
59
A
O
ILE
59
1
A
ARG
21
38.60
47.96
1
A
HIS
78
38.49
60.22
1
A
CYS
116
-131.72
-43.86
0.214
0.178
1.40
8.00
2236
22533
20297
11
random
1
isotropic
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
PDB entry 1rex
Engh & Huber
0.016
1.40
8.00
307
1336
0
0
1029
0.011
2.237
1.40
50.0
1JWR
184173
22814
1.0
0.048
1
44.6
8.07
98.4
0.115
1.40
1.42
11.3
811
7.95
94.9
data reduction
DENZO
data scaling
SCALEPACK
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
Crystal structure of human lysozyme at 100 K
1
N
N
2
N
N
A
GLU
4
A
GLU
4
HELX_P
A
LEU
15
A
LEU
15
1
1
12
A
GLY
19
A
GLY
19
HELX_P
A
ILE
23
A
ILE
23
5
2
5
A
SER
24
A
SER
24
HELX_P
A
GLY
37
A
GLY
37
1
3
14
A
SER
80
A
SER
80
HELX_P
A
GLN
86
A
GLN
86
5
4
7
A
ILE
89
A
ILE
89
HELX_P
A
ARG
101
A
ARG
101
1
5
13
A
GLN
104
A
GLN
104
HELX_P
A
ALA
108
A
ALA
108
5
6
5
A
TRP
109
A
TRP
109
HELX_P
A
CYS
116
A
CYS
116
1
7
8
A
VAL
121
A
VAL
121
HELX_P
A
GLN
126
A
GLN
126
5
8
6
disulf
2.037
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
128
A
SG
CYS
128
1_555
disulf
2.038
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
116
A
SG
CYS
116
1_555
disulf
2.041
A
CYS
65
A
SG
CYS
65
1_555
A
CYS
81
A
SG
CYS
81
1_555
disulf
2.034
A
CYS
77
A
SG
CYS
77
1_555
A
CYS
95
A
SG
CYS
95
1_555
HYDROLASE
hydration structure, HYDROLASE
LYSC_HUMAN
UNP
1
P61626
19
148
1JWR
1
130
P61626
A
1
1
130
3
anti-parallel
anti-parallel
A
THR
43
A
THR
43
A
TYR
45
A
TYR
45
A
THR
52
A
THR
52
A
TYR
54
A
TYR
54
A
ILE
59
A
ILE
59
A
ASN
60
A
ASN
60
19
P 21 21 21