0.013978
0.000000
0.002715
0.000000
0.013854
0.000000
0.000000
0.000000
0.013877
0.00000
0.00000
0.00000
Levesque, S.
St-Denis, Y.
Bachand, B.
Preville, P.
Leblond, L.
Winocour, P.D.
Edmunds, J.J.
Rubin, J.R.
Siddiqui, M.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.
100.99
90.0
71.54
72.18
73.41
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C22 H32 N6 O5 S
492.592
4-OXO-2-PHENYLMETHANESULFONYL-OCTAHYDRO-PYRROLO[1,2-A]PYRAZINE-6-CARBOXYLIC ACID [1-(N-HYDROXYCARBAMIMIDOYL)-PIPERIDIN-4-YLMETHYL]-AMIDE
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
11
3161
3164
10.1016/S0960-894X(01)00661-8
11720865
Novel bicyclic lactam inhibitors of thrombin: potency and selectivity optimization through P1 residues.
2001
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
Osmic Blue Confocal Mirror
IMAGE PLATE
1997-04-07
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
35124.043
Prothrombin
3.4.21.5
Residues 328-622
1
man
polymer
492.592
4-OXO-2-PHENYLMETHANESULFONYL-OCTAHYDRO-PYRROLO[1,2-A]PYRAZINE-6-CARBOXYLIC ACID [1-(N-HYDROXYCARBAMIMIDOYL)-PIPERIDIN-4-YLMETHYL]-AMIDE
1
syn
non-polymer
COAGULATION FACTOR II
no
no
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHC
LLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRE
TAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGD
SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGEDFEEIPEEYL
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHC
LLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRE
TAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGD
SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGEDFEEIPEEYL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
9606
Homo sapiens
1
2.65
53.54
software
repository
Initial release
Version format compliance
Version format compliance
Refinement description
1
0
2002-02-27
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
SEQUENCE
Residue (A ARG 36 ) and residue (A ILE 37 ) are not linked;
amide bond distance between the two residues is 30.95
Angstroms. In smiliar, residue (A GLU 289 ) and residue
(A ASP 290 ) are not linked; amide bond distance is 39.02
Angstroms.
RCSB
Y
RCSB
2001-09-05
REL
REL
BLI
4-OXO-2-PHENYLMETHANESULFONYL-OCTAHYDRO-PYRROLO[1,2-A]PYRAZINE-6-CARBOXYLIC ACID [1-(N-HYDROXYCARBAMIMIDOYL)-PIPERIDIN-4-YLMETHYL]-AMIDE
PIP
1
2
BLI
BLI
300
A
THR
1
n
1
THR
1
A
PHE
2
n
2
PHE
2
A
GLY
3
n
3
GLY
3
A
SER
4
n
4
SER
4
A
GLY
5
n
5
GLY
5
A
GLU
6
n
6
GLU
6
A
ALA
7
n
7
ALA
7
A
ASP
8
n
8
ASP
8
A
CYS
9
n
9
CYS
9
A
GLY
10
n
10
GLY
10
A
LEU
11
n
11
LEU
11
A
ARG
12
n
12
ARG
12
A
PRO
13
n
13
PRO
13
A
LEU
14
n
14
LEU
14
A
PHE
15
n
15
PHE
15
A
GLU
16
n
16
GLU
16
A
LYS
17
n
17
LYS
17
A
LYS
18
n
18
LYS
18
A
SER
19
n
19
SER
19
A
LEU
20
n
20
LEU
20
A
GLU
21
n
21
GLU
21
A
ASP
22
n
22
ASP
22
A
LYS
23
n
23
LYS
23
A
THR
24
n
24
THR
24
A
GLU
25
n
25
GLU
25
A
ARG
26
n
26
ARG
26
A
GLU
27
n
27
GLU
27
A
LEU
28
n
28
LEU
28
A
LEU
29
n
29
LEU
29
A
GLU
30
n
30
GLU
30
A
SER
31
n
31
SER
31
A
TYR
32
n
32
TYR
32
A
ILE
33
n
33
ILE
33
A
ASP
34
n
34
ASP
34
A
GLY
35
n
35
GLY
35
A
ARG
36
n
36
ARG
36
A
ILE
37
n
37
ILE
37
A
VAL
38
n
38
VAL
38
A
GLU
39
n
39
GLU
39
A
GLY
40
n
40
GLY
40
A
SER
41
n
41
SER
41
A
ASP
42
n
42
ASP
42
A
ALA
43
n
43
ALA
43
A
GLU
44
n
44
GLU
44
A
ILE
45
n
45
ILE
45
A
GLY
46
n
46
GLY
46
A
MET
47
n
47
MET
47
A
SER
48
n
48
SER
48
A
PRO
49
n
49
PRO
49
A
TRP
50
n
50
TRP
50
A
GLN
51
n
51
GLN
51
A
VAL
52
n
52
VAL
52
A
MET
53
n
53
MET
53
A
LEU
54
n
54
LEU
54
A
PHE
55
n
55
PHE
55
A
ARG
56
n
56
ARG
56
A
LYS
57
n
57
LYS
57
A
SER
58
n
58
SER
58
A
PRO
59
n
59
PRO
59
A
GLN
60
n
60
GLN
60
A
GLU
61
n
61
GLU
61
A
LEU
62
n
62
LEU
62
A
LEU
63
n
63
LEU
63
A
CYS
64
n
64
CYS
64
A
GLY
65
n
65
GLY
65
A
ALA
66
n
66
ALA
66
A
SER
67
n
67
SER
67
A
LEU
68
n
68
LEU
68
A
ILE
69
n
69
ILE
69
A
SER
70
n
70
SER
70
A
ASP
71
n
71
ASP
71
A
ARG
72
n
72
ARG
72
A
TRP
73
n
73
TRP
73
A
VAL
74
n
74
VAL
74
A
LEU
75
n
75
LEU
75
A
THR
76
n
76
THR
76
A
ALA
77
n
77
ALA
77
A
ALA
78
n
78
ALA
78
A
HIS
79
n
79
HIS
79
A
CYS
80
n
80
CYS
80
A
LEU
81
n
81
LEU
81
A
LEU
82
n
82
LEU
82
A
TYR
83
n
83
TYR
83
A
PRO
84
n
84
PRO
84
A
PRO
85
n
85
PRO
85
A
TRP
86
n
86
TRP
86
A
ASP
87
n
87
ASP
87
A
LYS
88
n
88
LYS
88
A
ASN
89
n
89
ASN
89
A
PHE
90
n
90
PHE
90
A
THR
91
n
91
THR
91
A
GLU
92
n
92
GLU
92
A
ASN
93
n
93
ASN
93
A
ASP
94
n
94
ASP
94
A
LEU
95
n
95
LEU
95
A
LEU
96
n
96
LEU
96
A
VAL
97
n
97
VAL
97
A
ARG
98
n
98
ARG
98
A
ILE
99
n
99
ILE
99
A
GLY
100
n
100
GLY
100
A
LYS
101
n
101
LYS
101
A
HIS
102
n
102
HIS
102
A
SER
103
n
103
SER
103
A
ARG
104
n
104
ARG
104
A
THR
105
n
105
THR
105
A
ARG
106
n
106
ARG
106
A
TYR
107
n
107
TYR
107
A
GLU
108
n
108
GLU
108
A
ARG
109
n
109
ARG
109
A
ASN
110
n
110
ASN
110
A
ILE
111
n
111
ILE
111
A
GLU
112
n
112
GLU
112
A
LYS
113
n
113
LYS
113
A
ILE
114
n
114
ILE
114
A
SER
115
n
115
SER
115
A
MET
116
n
116
MET
116
A
LEU
117
n
117
LEU
117
A
GLU
118
n
118
GLU
118
A
LYS
119
n
119
LYS
119
A
ILE
120
n
120
ILE
120
A
TYR
121
n
121
TYR
121
A
ILE
122
n
122
ILE
122
A
HIS
123
n
123
HIS
123
A
PRO
124
n
124
PRO
124
A
ARG
125
n
125
ARG
125
A
TYR
126
n
126
TYR
126
A
ASN
127
n
127
ASN
127
A
TRP
128
n
128
TRP
128
A
ARG
129
n
129
ARG
129
A
GLU
130
n
130
GLU
130
A
ASN
131
n
131
ASN
131
A
LEU
132
n
132
LEU
132
A
ASP
133
n
133
ASP
133
A
ARG
134
n
134
ARG
134
A
ASP
135
n
135
ASP
135
A
ILE
136
n
136
ILE
136
A
ALA
137
n
137
ALA
137
A
LEU
138
n
138
LEU
138
A
MET
139
n
139
MET
139
A
LYS
140
n
140
LYS
140
A
LEU
141
n
141
LEU
141
A
LYS
142
n
142
LYS
142
A
LYS
143
n
143
LYS
143
A
PRO
144
n
144
PRO
144
A
VAL
145
n
145
VAL
145
A
ALA
146
n
146
ALA
146
A
PHE
147
n
147
PHE
147
A
SER
148
n
148
SER
148
A
ASP
149
n
149
ASP
149
A
TYR
150
n
150
TYR
150
A
ILE
151
n
151
ILE
151
A
HIS
152
n
152
HIS
152
A
PRO
153
n
153
PRO
153
A
VAL
154
n
154
VAL
154
A
CYS
155
n
155
CYS
155
A
LEU
156
n
156
LEU
156
A
PRO
157
n
157
PRO
157
A
ASP
158
n
158
ASP
158
A
ARG
159
n
159
ARG
159
A
GLU
160
n
160
GLU
160
A
THR
161
n
161
THR
161
A
ALA
162
n
162
ALA
162
A
ALA
163
n
163
ALA
163
A
SER
164
n
164
SER
164
A
LEU
165
n
165
LEU
165
A
LEU
166
n
166
LEU
166
A
GLN
167
n
167
GLN
167
A
ALA
168
n
168
ALA
168
A
GLY
169
n
169
GLY
169
A
TYR
170
n
170
TYR
170
A
LYS
171
n
171
LYS
171
A
GLY
172
n
172
GLY
172
A
ARG
173
n
173
ARG
173
A
VAL
174
n
174
VAL
174
A
THR
175
n
175
THR
175
A
GLY
176
n
176
GLY
176
A
TRP
177
n
177
TRP
177
A
GLY
178
n
178
GLY
178
A
ASN
179
n
179
ASN
179
A
LEU
180
n
180
LEU
180
A
LYS
181
n
181
LYS
181
A
GLU
182
n
182
GLU
182
A
THR
183
n
183
THR
183
A
TRP
184
n
184
TRP
184
A
n
185
A
184
A
n
186
B
184
A
n
187
C
184
A
n
188
D
184
A
n
189
E
184
A
n
190
F
184
A
GLY
185
n
191
GLY
185
A
GLN
186
n
192
GLN
186
A
PRO
187
n
193
PRO
187
A
SER
188
n
194
SER
188
A
VAL
189
n
195
VAL
189
A
LEU
190
n
196
LEU
190
A
GLN
191
n
197
GLN
191
A
VAL
192
n
198
VAL
192
A
VAL
193
n
199
VAL
193
A
ASN
194
n
200
ASN
194
A
LEU
195
n
201
LEU
195
A
PRO
196
n
202
PRO
196
A
ILE
197
n
203
ILE
197
A
VAL
198
n
204
VAL
198
A
GLU
199
n
205
GLU
199
A
ARG
200
n
206
ARG
200
A
PRO
201
n
207
PRO
201
A
VAL
202
n
208
VAL
202
A
CYS
203
n
209
CYS
203
A
LYS
204
n
210
LYS
204
A
ASP
205
n
211
ASP
205
A
SER
206
n
212
SER
206
A
THR
207
n
213
THR
207
A
ARG
208
n
214
ARG
208
A
ILE
209
n
215
ILE
209
A
ARG
210
n
216
ARG
210
A
ILE
211
n
217
ILE
211
A
THR
212
n
218
THR
212
A
ASP
213
n
219
ASP
213
A
ASN
214
n
220
ASN
214
A
MET
215
n
221
MET
215
A
PHE
216
n
222
PHE
216
A
CYS
217
n
223
CYS
217
A
ALA
218
n
224
ALA
218
A
GLY
219
n
225
GLY
219
A
TYR
220
n
226
TYR
220
A
LYS
221
n
227
LYS
221
A
PRO
222
n
228
PRO
222
A
ASP
223
n
229
ASP
223
A
GLU
224
n
230
GLU
224
A
GLY
225
n
231
GLY
225
A
LYS
226
n
232
LYS
226
A
ARG
227
n
233
ARG
227
A
GLY
228
n
234
GLY
228
A
ASP
229
n
235
ASP
229
A
ALA
230
n
236
ALA
230
A
CYS
231
n
237
CYS
231
A
GLU
232
n
238
GLU
232
A
GLY
233
n
239
GLY
233
A
ASP
234
n
240
ASP
234
A
SER
235
n
241
SER
235
A
GLY
236
n
242
GLY
236
A
GLY
237
n
243
GLY
237
A
PRO
238
n
244
PRO
238
A
PHE
239
n
245
PHE
239
A
VAL
240
n
246
VAL
240
A
MET
241
n
247
MET
241
A
LYS
242
n
248
LYS
242
A
SER
243
n
249
SER
243
A
PRO
244
n
250
PRO
244
A
PHE
245
n
251
PHE
245
A
ASN
246
n
252
ASN
246
A
ASN
247
n
253
ASN
247
A
ARG
248
n
254
ARG
248
A
TRP
249
n
255
TRP
249
A
TYR
250
n
256
TYR
250
A
GLN
251
n
257
GLN
251
A
MET
252
n
258
MET
252
A
GLY
253
n
259
GLY
253
A
ILE
254
n
260
ILE
254
A
VAL
255
n
261
VAL
255
A
SER
256
n
262
SER
256
A
TRP
257
n
263
TRP
257
A
GLY
258
n
264
GLY
258
A
GLU
259
n
265
GLU
259
A
GLY
260
n
266
GLY
260
A
CYS
261
n
267
CYS
261
A
ASP
262
n
268
ASP
262
A
ARG
263
n
269
ARG
263
A
ASP
264
n
270
ASP
264
A
GLY
265
n
271
GLY
265
A
LYS
266
n
272
LYS
266
A
TYR
267
n
273
TYR
267
A
GLY
268
n
274
GLY
268
A
PHE
269
n
275
PHE
269
A
TYR
270
n
276
TYR
270
A
THR
271
n
277
THR
271
A
HIS
272
n
278
HIS
272
A
VAL
273
n
279
VAL
273
A
PHE
274
n
280
PHE
274
A
ARG
275
n
281
ARG
275
A
LEU
276
n
282
LEU
276
A
LYS
277
n
283
LYS
277
A
LYS
278
n
284
LYS
278
A
TRP
279
n
285
TRP
279
A
ILE
280
n
286
ILE
280
A
GLN
281
n
287
GLN
281
A
LYS
282
n
288
LYS
282
A
VAL
283
n
289
VAL
283
A
ILE
284
n
290
ILE
284
A
ASP
285
n
291
ASP
285
A
GLN
286
n
292
GLN
286
A
PHE
287
n
293
PHE
287
A
GLY
288
n
294
GLY
288
A
GLU
289
n
295
GLU
289
A
ASP
290
n
296
ASP
290
A
PHE
291
n
297
PHE
291
A
GLU
292
n
298
GLU
292
A
GLU
293
n
299
GLU
293
A
ILE
294
n
300
ILE
294
A
PRO
295
n
301
PRO
295
A
GLU
296
n
302
GLU
296
A
GLU
297
n
303
GLU
297
A
TYR
298
n
304
TYR
298
A
LEU
299
n
305
LEU
299
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
54
A
N
LEU
54
A
O
CYS
64
A
O
CYS
64
A
N
SER
67
A
N
SER
67
A
O
LEU
75
A
O
LEU
75
A
N
VAL
74
A
N
VAL
74
A
O
MET
139
A
O
MET
139
A
O
LYS
140
A
O
LYS
140
A
N
LYS
119
A
N
LYS
119
A
O
SER
115
A
O
SER
115
A
N
VAL
97
A
N
VAL
97
A
O
LEU
96
A
O
LEU
96
A
N
PHE
55
A
N
PHE
55
A
N
TYR
83
A
N
TYR
83
A
O
LYS
88
A
O
LYS
88
A
N
GLY
176
A
N
GLY
176
A
O
GLN
191
A
O
GLN
197
A
N
ALA
218
A
N
ALA
224
A
O
GLY
268
A
O
GLY
274
A
O
PHE
269
A
O
PHE
275
A
N
TRP
257
A
N
TRP
263
A
O
TYR
250
A
O
TYR
256
A
N
MET
241
A
N
MET
247
A
1
A
THR
184
A
THR
185
1
Y
B
1
A
ALA
184
A
ALA
186
1
Y
C
1
A
ASN
184
A
ASN
187
1
Y
D
1
A
VAL
184
A
VAL
188
1
Y
E
1
A
GLY
184
A
GLY
189
1
Y
F
1
A
LYS
184
A
LYS
190
1
Y
1
A
A
GLY
GLU
5
6
-147.73
1
A
A
ILE
ASP
33
34
-140.25
1
A
A
CYS
GLY
64
65
149.30
1
A
A
GLU
ARG
108
109
-146.49
1
A
A
PHE
GLY
287
288
-135.40
1
A
TYR
83
0.075
SIDE CHAIN
1
A
TYR
107
0.080
SIDE CHAIN
1
A
ARG
109
0.123
SIDE CHAIN
1
A
ARG
125
0.110
SIDE CHAIN
1
A
ARG
129
0.090
SIDE CHAIN
1
A
TYR
150
0.094
SIDE CHAIN
1
A
TYR
170
0.125
SIDE CHAIN
1
A
ARG
173
0.134
SIDE CHAIN
1
A
ARG
200
0.147
SIDE CHAIN
1
A
ARG
208
0.136
SIDE CHAIN
1
A
ARG
210
0.122
SIDE CHAIN
1
A
ARG
248
0.098
SIDE CHAIN
1
A
PHE
274
0.108
SIDE CHAIN
1
A
TYR
298
0.121
SIDE CHAIN
1
A
A
C
N
ARG
ILE
36
37
30.95
1
A
A
C
N
GLU
ASP
289
290
39.02
1
-3.65
0.60
121.00
117.35
A
A
A
CB
CG
CD2
TYR
TYR
TYR
32
32
32
N
1
4.83
0.50
120.30
125.13
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
36
36
36
N
1
-4.22
0.50
120.30
116.08
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
56
56
56
N
1
3.12
0.50
120.30
123.42
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
72
72
72
N
1
-3.46
0.50
120.30
116.84
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
72
72
72
N
1
9.50
1.50
110.90
120.40
A
A
A
CA
CB
CG1
VAL
VAL
VAL
74
74
74
N
1
-18.08
2.00
110.40
92.32
A
A
A
CB
CA
C
ASN
ASN
ASN
93
93
93
N
1
-7.54
1.20
123.30
115.76
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
112
112
112
N
1
3.79
0.50
120.30
124.09
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
125
125
125
N
1
-15.69
2.50
121.70
106.01
A
A
A
C
N
CA
ARG
GLU
GLU
129
130
130
Y
1
-4.79
0.70
120.80
116.01
A
A
A
CB
CG
CD2
PHE
PHE
PHE
147
147
147
N
1
-3.89
0.60
121.00
117.11
A
A
A
CB
CG
CD2
TYR
TYR
TYR
170
170
170
N
1
-12.30
2.00
110.40
98.10
A
A
A
CB
CA
C
TRP
TRP
TRP
177
177
177
N
1
4.10
0.50
120.30
124.40
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
200
200
200
N
1
3.12
0.50
120.30
123.42
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
208
208
208
N
1
3.26
0.50
120.30
123.56
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
210
210
210
N
1
18.01
2.00
110.40
128.41
A
A
A
CB
CA
C
ASN
ASN
ASN
247
247
247
N
1
3.54
0.50
120.30
123.84
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
248
248
248
N
1
-3.84
0.60
121.00
117.16
A
A
A
CB
CG
CD2
TYR
TYR
TYR
250
250
250
N
1
-4.44
0.60
121.00
116.56
A
A
A
CB
CG
CD2
TYR
TYR
TYR
267
267
267
N
1
-3.65
0.60
121.00
117.35
A
A
A
CB
CG
CD2
TYR
TYR
TYR
270
270
270
N
1
18.97
2.50
121.70
140.67
A
A
A
C
N
CA
GLY
GLU
GLU
288
289
289
Y
1
13.83
2.20
113.40
127.23
A
A
A
CA
CB
CG
GLU
GLU
GLU
293
293
293
N
1
A
A
CG
CD2
HIS
HIS
79
79
0.057
0.009
1.354
1.411
N
1
A
PHE
2
-128.01
-139.20
1
A
SER
4
24.32
78.39
1
A
PHE
15
-126.85
-86.85
1
A
LYS
23
-76.79
23.91
1
A
GLU
25
-41.95
-71.32
1
A
ARG
26
-14.37
-60.67
1
A
LEU
28
-53.55
-74.25
1
A
TYR
32
-80.93
40.18
1
A
ILE
33
32.37
71.38
1
A
ASP
34
43.55
-149.48
1
A
ASP
42
-36.31
138.43
1
A
PRO
59
-59.52
-176.28
1
A
LEU
81
-92.06
-78.72
1
A
TYR
83
178.87
65.09
1
A
TRP
86
-101.03
59.13
1
A
ASP
87
22.80
34.12
1
A
GLU
92
-61.04
3.62
1
A
HIS
102
-142.36
-57.62
1
A
ASN
131
-150.31
28.34
1
A
ASP
135
-53.19
77.15
1
A
SER
148
-134.47
-154.12
1
A
PRO
201
-41.08
-93.03
1
A
VAL
202
-9.04
-54.01
1
A
GLU
224
-28.45
-15.02
1
A
ALA
230
-77.70
-158.09
1
A
CYS
231
168.05
-177.76
1
A
SER
235
-38.51
144.04
1
A
ASN
247
97.61
24.55
1
A
SER
256
-121.28
-85.66
1
A
LYS
282
-32.31
-71.65
1
A
PHE
291
-39.64
127.17
0.301
0.182
0.186
0.182
2.5
25.0
1010
12595
10101
98.43
XPLOR selection
1
2.0
FOURIER SYNTHESIS
Engh & Huber
2.5
25.0
0
3044
66
0
2978
2.5
25.0
1JWT
12595
1
data scaling
XDS
data reduction
AUTOMAR
model building
X-PLOR
refinement
X-PLOR
data reduction
XDS
phasing
X-PLOR
Prothrombin (E.C.3.4.21.5)
CRYSTAL STRUCTURE OF THROMBIN IN COMPLEX WITH A NOVEL BICYCLIC LACTAM INHIBITOR
1
N
N
2
N
N
A
THR
24
A
THR
24
HELX_P
A
TYR
32
A
TYR
32
1
1
9
A
ALA
77
A
ALA
77
HELX_P
A
CYS
80
A
CYS
80
5
2
4
A
PRO
84
A
PRO
84
HELX_P
A
ASP
87
A
ASP
87
5
3
4
A
ASP
158
A
ASP
158
HELX_P
A
LEU
166
A
LEU
166
1
4
9
A
GLU
199
A
GLU
205
HELX_P
A
ASP
205
A
ASP
211
1
5
7
A
HIS
272
A
HIS
278
HELX_P
A
GLN
286
A
GLN
292
1
6
15
A
PRO
295
A
PRO
301
HELX_P
A
LEU
299
A
LEU
305
5
7
5
disulf
1.988
A
CYS
9
A
SG
CYS
9
1_555
A
CYS
155
A
SG
CYS
155
1_555
disulf
2.052
A
CYS
64
A
SG
CYS
64
1_555
A
CYS
80
A
SG
CYS
80
1_555
disulf
2.093
A
CYS
203
A
SG
CYS
209
1_555
A
CYS
217
A
SG
CYS
223
1_555
disulf
2.015
A
CYS
231
A
SG
CYS
237
1_555
A
CYS
261
A
SG
CYS
267
1_555
HYDROLASE
HYDROLASE
A
SER
58
A
SER
58
1
A
PRO
59
A
PRO
59
-9.56
THRB_HUMAN
UNP
1
328
P00734
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHC
LLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRE
TAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGD
SGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFGE
328
622
1JWT
1
289
P00734
A
1
1
295
1
CLONING ARTIFACT
ASP
290
1JWT
A
P00734
UNP
296
1
CLONING ARTIFACT
PHE
291
1JWT
A
P00734
UNP
297
1
CLONING ARTIFACT
GLU
292
1JWT
A
P00734
UNP
298
1
CLONING ARTIFACT
GLU
293
1JWT
A
P00734
UNP
299
1
CLONING ARTIFACT
ILE
294
1JWT
A
P00734
UNP
300
1
CLONING ARTIFACT
PRO
295
1JWT
A
P00734
UNP
301
1
CLONING ARTIFACT
GLU
296
1JWT
A
P00734
UNP
302
1
CLONING ARTIFACT
GLU
297
1JWT
A
P00734
UNP
303
1
CLONING ARTIFACT
TYR
298
1JWT
A
P00734
UNP
304
1
CLONING ARTIFACT
LEU
299
1JWT
A
P00734
UNP
305
7
2
2
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLN
51
A
GLN
51
A
ARG
56
A
ARG
56
A
LEU
62
A
LEU
62
A
SER
70
A
SER
70
A
TRP
73
A
TRP
73
A
THR
76
A
THR
76
A
ALA
137
A
ALA
137
A
LEU
141
A
LEU
141
A
LYS
113
A
LYS
113
A
ILE
120
A
ILE
120
A
LEU
95
A
LEU
95
A
ILE
99
A
ILE
99
A
GLN
51
A
GLN
51
A
ARG
56
A
ARG
56
A
LEU
82
A
LEU
82
A
TYR
83
A
TYR
83
A
LYS
88
A
LYS
88
A
ASN
89
A
ASN
89
A
LYS
171
A
LYS
171
A
GLY
176
A
GLY
176
A
GLN
191
A
GLN
197
A
PRO
196
A
PRO
202
A
MET
215
A
MET
221
A
ALA
218
A
ALA
224
A
GLY
268
A
GLY
274
A
THR
271
A
THR
277
A
TRP
249
A
TRP
255
A
GLY
258
A
GLY
264
A
PRO
238
A
PRO
244
A
LYS
242
A
LYS
248
BINDING SITE FOR RESIDUE BLI A 300
Software
13
A
HIS
79
A
HIS
79
13
1_555
A
TYR
83
A
TYR
83
13
1_555
A
ILE
209
A
ILE
215
13
1_555
A
ASP
229
A
ASP
235
13
1_555
A
CYS
231
A
CYS
237
13
1_555
A
GLU
232
A
GLU
238
13
1_555
A
SER
235
A
SER
241
13
1_555
A
SER
256
A
SER
262
13
1_555
A
TRP
257
A
TRP
263
13
1_555
A
GLY
258
A
GLY
264
13
1_555
A
GLY
260
A
GLY
266
13
1_555
A
GLY
268
A
GLY
274
13
1_555
A
TYR
270
A
TYR
276
13
1_555
5
C 1 2 1