1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Bertini, I.
Bryant, D.A.
Ciurli, S.
Dikiy, A.
Fernandez, C.O.
Luchinat, C.
Safarov, N.
Vila, A.J.
Zhao, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cu 2
63.546
COPPER (II) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
276
47217
47226
10.1074/jbc.M100304200
11509552
Backbone dynamics of plastocyanin in both oxidation states. Solution structure of the reduced form and comparison with the oxidized state.
2001
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
123
2405
2413
10.1021/ja0033685
THE FIRST SOLUTION STRUCTURE OF A PARAMAGNETIC COPPER(II) PROTEIN: THE CASE OF OXIDIZED PLASTOCYANIN FROM THE CYANOBACTERIUM SYNECHOCYSTIS PCC6803
2001
10.2210/pdb1jxd/pdb
pdb_00001jxd
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
10249.430
PLASTOCYANIN
D98E
1
man
polymer
63.546
COPPER (II) ION
1
syn
non-polymer
no
no
ANATVKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFAADGVDADTAAKLSHKGLAFAAGESFTSTFTEPGTYT
YYCEPHRGAGMVGKVVVD
ANATVKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFAADGVDADTAAKLSHKGLAFAAGESFTSTFTEPGTYT
YYCEPHRGAGMVGKVVVD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Synechocystis
PCC6803
Escherichia
sample
1148
Synechocystis sp. PCC 6803
562
Escherichia coli
BLR(DE3)
PLASMID
PET3D
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-09-26
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-10-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Solution structure of oxidized paramagnetic Cu(II) plastocyanin from Synechocystis PCC6803 - Structure ensemble
Solution structure of oxidized paramagnetic Cu(II) plastocyanin from Synechocystis PCC6803 - Minimized average structure
SOLUTION STRUCTURE OF REDUCED CU(I) PLASTOCYANIN FROM SYNECHOCYSTIS PCC6803
RCSB
Y
RCSB
2001-09-07
REL
CU
COPPER (II) ION
1
2D NOESY
HNHA
50 mM PHOSPHATE
5.2
AMBIENT
295
K
ENERGY MINIMIZATION
3 MM PLASTOCYANIN U-15N
50 MM PHOSPHATE BUFFER
structure solution
XwinNMR
2.0
structure solution
XEASY
1.3.13
KOLLMAN
refinement
Amber
5.0
600
Bruker
AVANCE
700
Bruker
AVANCE
800
Bruker
AVANCE
CU
99
2
CU
CU
99
A
ALA
1
n
1
ALA
1
A
ASN
2
n
2
ASN
2
A
ALA
3
n
3
ALA
3
A
THR
4
n
4
THR
4
A
VAL
5
n
5
VAL
5
A
LYS
6
n
6
LYS
6
A
MET
7
n
7
MET
7
A
GLY
8
n
8
GLY
8
A
SER
9
n
9
SER
9
A
ASP
10
n
10
ASP
10
A
SER
11
n
11
SER
11
A
GLY
12
n
12
GLY
12
A
ALA
13
n
13
ALA
13
A
LEU
14
n
14
LEU
14
A
VAL
15
n
15
VAL
15
A
PHE
16
n
16
PHE
16
A
GLU
17
n
17
GLU
17
A
PRO
18
n
18
PRO
18
A
SER
19
n
19
SER
19
A
THR
20
n
20
THR
20
A
VAL
21
n
21
VAL
21
A
THR
22
n
22
THR
22
A
ILE
23
n
23
ILE
23
A
LYS
24
n
24
LYS
24
A
ALA
25
n
25
ALA
25
A
GLY
26
n
26
GLY
26
A
GLU
27
n
27
GLU
27
A
GLU
28
n
28
GLU
28
A
VAL
29
n
29
VAL
29
A
LYS
30
n
30
LYS
30
A
TRP
31
n
31
TRP
31
A
VAL
32
n
32
VAL
32
A
ASN
33
n
33
ASN
33
A
ASN
34
n
34
ASN
34
A
LYS
35
n
35
LYS
35
A
LEU
36
n
36
LEU
36
A
SER
37
n
37
SER
37
A
PRO
38
n
38
PRO
38
A
HIS
39
n
39
HIS
39
A
ASN
40
n
40
ASN
40
A
ILE
41
n
41
ILE
41
A
VAL
42
n
42
VAL
42
A
PHE
43
n
43
PHE
43
A
ALA
44
n
44
ALA
44
A
ALA
45
n
45
ALA
45
A
ASP
46
n
46
ASP
46
A
GLY
47
n
47
GLY
47
A
VAL
48
n
48
VAL
48
A
ASP
49
n
49
ASP
49
A
ALA
50
n
50
ALA
50
A
ASP
51
n
51
ASP
51
A
THR
52
n
52
THR
52
A
ALA
53
n
53
ALA
53
A
ALA
54
n
54
ALA
54
A
LYS
55
n
55
LYS
55
A
LEU
56
n
56
LEU
56
A
SER
57
n
57
SER
57
A
HIS
58
n
58
HIS
58
A
LYS
59
n
59
LYS
59
A
GLY
60
n
60
GLY
60
A
LEU
61
n
61
LEU
61
A
ALA
62
n
62
ALA
62
A
PHE
63
n
63
PHE
63
A
ALA
64
n
64
ALA
64
A
ALA
65
n
65
ALA
65
A
GLY
66
n
66
GLY
66
A
GLU
67
n
67
GLU
67
A
SER
68
n
68
SER
68
A
PHE
69
n
69
PHE
69
A
THR
70
n
70
THR
70
A
SER
71
n
71
SER
71
A
THR
72
n
72
THR
72
A
PHE
73
n
73
PHE
73
A
THR
74
n
74
THR
74
A
GLU
75
n
75
GLU
75
A
PRO
76
n
76
PRO
76
A
GLY
77
n
77
GLY
77
A
THR
78
n
78
THR
78
A
TYR
79
n
79
TYR
79
A
THR
80
n
80
THR
80
A
TYR
81
n
81
TYR
81
A
TYR
82
n
82
TYR
82
A
CYS
83
n
83
CYS
83
A
GLU
84
n
84
GLU
84
A
PRO
85
n
85
PRO
85
A
HIS
86
n
86
HIS
86
A
ARG
87
n
87
ARG
87
A
GLY
88
n
88
GLY
88
A
ALA
89
n
89
ALA
89
A
GLY
90
n
90
GLY
90
A
MET
91
n
91
MET
91
A
VAL
92
n
92
VAL
92
A
GLY
93
n
93
GLY
93
A
LYS
94
n
94
LYS
94
A
VAL
95
n
95
VAL
95
A
VAL
96
n
96
VAL
96
A
VAL
97
n
97
VAL
97
A
ASP
98
n
98
ASP
98
A
author_defined_assembly
1
monomeric
A
HIS
39
A
ND1
HIS
39
1_555
A
CU
99
B
CU
CU
1_555
A
CYS
83
A
SG
CYS
83
1_555
120.9
A
HIS
39
A
ND1
HIS
39
1_555
A
CU
99
B
CU
CU
1_555
A
HIS
86
A
ND1
HIS
86
1_555
108.7
A
CYS
83
A
SG
CYS
83
1_555
A
CU
99
B
CU
CU
1_555
A
HIS
86
A
ND1
HIS
86
1_555
108.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
17
A
O
GLU
17
A
N
LYS
6
A
N
LYS
6
A
N
MET
7
A
N
MET
7
A
O
VAL
32
A
O
VAL
32
A
N
TRP
31
A
N
TRP
31
A
O
PHE
69
A
O
PHE
69
A
N
VAL
21
A
N
VAL
21
A
O
VAL
96
A
O
VAL
96
A
O
GLY
93
A
O
GLY
93
A
N
TYR
81
A
N
TYR
81
A
O
TYR
82
A
O
TYR
82
A
N
VAL
42
A
N
VAL
42
1
A
SER
11
-169.99
-79.23
1
A
ASN
34
-132.27
-88.54
1
A
ALA
65
-69.45
80.54
SOLUTION STRUCTURE OF REDUCED CU(I) PLASTOCYANIN FROM SYNECHOCYSTIS PCC6803
1
N
N
2
N
N
A
ASP
49
A
ASP
49
HELX_P
A
SER
57
A
SER
57
1
1
9
metalc
2.150
A
HIS
39
A
ND1
HIS
39
1_555
A
CU
99
B
CU
CU
1_555
metalc
2.286
A
CYS
83
A
SG
CYS
83
1_555
A
CU
99
B
CU
CU
1_555
metalc
2.120
A
HIS
86
A
ND1
HIS
86
1_555
A
CU
99
B
CU
CU
1_555
ELECTRON TRANSPORT
COPPER PROTEIN BETA BARREL ELECTRON TRANSFER, ELECTRON TRANSPORT
A
GLU
17
A
GLU
17
1
A
PRO
18
A
PRO
18
-9.62
A
SER
37
A
SER
37
1
A
PRO
38
A
PRO
38
-2.25
PLAS_SYNY3
UNP
1
1
P21697
MSKKFLTILAGLLLVVSSFFLSVSPAAAANATVKMGSDSGALVFEPSTVTIKAGEEVKWVNNKLSPHNIVFAADGVDADT
AAKLSHKGLAFAAGESFTSTFTEPGTYTYYCEPHRGAGMVGKVVVE
29
126
1JXD
1
98
P21697
A
1
1
98
1
GLU
engineered mutation
ASP
98
1JXD
A
P21697
UNP
126
98
4
4
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
PHE
16
A
PHE
16
A
GLU
17
A
GLU
17
A
ALA
3
A
ALA
3
A
MET
7
A
MET
7
A
GLU
28
A
GLU
28
A
ASN
33
A
ASN
33
A
SER
68
A
SER
68
A
THR
72
A
THR
72
A
THR
20
A
THR
20
A
ILE
23
A
ILE
23
A
VAL
92
A
VAL
92
A
VAL
97
A
VAL
97
A
GLY
77
A
GLY
77
A
TYR
82
A
TYR
82
A
VAL
42
A
VAL
42
A
ALA
44
A
ALA
44
BINDING SITE FOR RESIDUE CU A 99
A
CU
99
Software
4
A
HIS
39
A
HIS
39
4
1_555
A
CYS
83
A
CYS
83
4
1_555
A
HIS
86
A
HIS
86
4
1_555
A
MET
91
A
MET
91
4
1_555