0.024450
0.000000
0.000341
0.000000
0.053792
0.000000
0.000000
0.000000
0.044647
0.00000
0.00000
0.00000
Teeter, M.M.
Yamano, A.
Stec, B.
Mohanty, U.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
90.80
90.00
40.900
18.590
22.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O
46.068
ETHANOL
non-polymer
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
C
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
N
N
98
S
C
N
99
N
C
N
100
N
O
N
101
N
C
N
102
N
C
N
103
N
C
N
104
N
O
N
105
N
O
N
106
N
O
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
N
C
N
118
N
C
N
119
N
O
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
N
N
127
S
C
N
128
N
C
N
129
N
O
N
130
S
C
N
131
N
C
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
Y
175
N
C
Y
176
N
C
Y
177
N
C
Y
178
N
C
Y
179
N
C
Y
180
N
C
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
O
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
N
N
225
S
C
N
226
N
C
N
227
N
O
N
228
R
C
N
229
N
O
N
230
N
C
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
Y
246
N
C
Y
247
N
C
Y
248
N
C
Y
249
N
C
Y
250
N
C
Y
251
N
C
N
252
N
O
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
Y
171
N
doub
Y
172
N
sing
Y
173
N
sing
N
174
N
sing
Y
175
N
doub
N
176
N
sing
Y
177
N
doub
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
Y
240
N
doub
Y
241
N
sing
Y
242
N
sing
N
243
N
sing
Y
244
N
doub
N
245
N
sing
Y
246
N
doub
N
247
N
sing
Y
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
98
11242
11247
10.1073/pnas.201404398
11572978
On the nature of a glassy state of matter in a hydrated protein: Relation to protein function.
2001
10.2210/pdb1jxu/pdb
pdb_00001jxu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
240.0
1
COLLIMATOR
DIFFRACTOMETER
1990-12-25
RIGAKU AFC-5R
MO
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
4728.410
Crambin
1
nat
polymer
46.068
ETHANOL
1
syn
non-polymer
no
no
TTCCPSIVARSNFNVCRLPGTSEAICATYTGCIIIPGATCPGDYAN
TTCCPSIVARSNFNVCRLPGTSEAICATYTGCIIIPGATCPGDYAN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
y
y
n
n
y
y
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Crambe
sample
3721
Crambe hispanica subsp. abyssinica
Crambe hispanica
subsp. abyssinica
1
1.40
30.0
VALUES OF F/SIGF ARE GIVEN ABOVE RATHER THAN I/SIGI.
VAPOR DIFFUSION, SITTING DROP
7.00
ethanol, pH 7.00, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Atomic model
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2001-10-31
1
1
2007-10-21
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1CRN IS Mixed sequence isoform of crambin at 293 K
1CNR IS Pro22/Leu25 isoform of crambin at 150 K
1AB1 IS Ser22/Ile 25 isoform of crambin at 150 K
1CBN IS Mixed sequence form of crambin at 130 K
1EJG IS Mixed sequence isoform of crambin at 100 K and 0.54 Angstrom resolution
1JXT IS Mixed sequence isoform of crambin at 160 K, the same crystal.
1JXW IS MIXED SEQUENCE isoFORM of crambin AT 180 K, the same crystal.
1JXX IS MIXED SEQUENCE isoFORM of crambin AT 200 K, the same crystal.
1JXY IS MIXED SEQUENCE isoFORM of crambin AT 220 K, the same crystal.
RCSB
Y
RCSB
2001-09-09
REL
REL
EOH
ETHANOL
sequence
PRO/SER22:LEU/ILE25 SEQUENCE ISOFORMS ARE MODELLED
AS ALTERNATE CONFORMERS IN COORDINATE RECORDS.
ONLY THE PRO22/LEU25 ISOFORM IS REPRESENTED IN THE
SEQUENCE RECORDS.
1JXY
1JXY. CRAMBIN MIXED ISOFORM AT 220 K.
PDB
experimental model
EOH
66
2
EOH
EOH
66
A
THR
1
n
1
THR
1
A
THR
2
n
2
THR
2
A
CYS
3
n
3
CYS
3
A
CYS
4
n
4
CYS
4
A
PRO
5
n
5
PRO
5
A
SER
6
n
6
SER
6
A
ILE
7
n
7
ILE
7
A
VAL
8
n
8
VAL
8
A
ALA
9
n
9
ALA
9
A
ARG
10
n
10
ARG
10
A
SER
11
n
11
SER
11
A
ASN
12
n
12
ASN
12
A
PHE
13
n
13
PHE
13
A
ASN
14
n
14
ASN
14
A
VAL
15
n
15
VAL
15
A
CYS
16
n
16
CYS
16
A
ARG
17
n
17
ARG
17
A
LEU
18
n
18
LEU
18
A
PRO
19
n
19
PRO
19
A
GLY
20
n
20
GLY
20
A
THR
21
n
21
THR
21
A
SER
22
y
22
SER
22
A
PRO
22
y
22
PRO
22
A
GLU
23
n
23
GLU
23
A
ALA
24
n
24
ALA
24
A
ILE
25
y
25
ILE
25
A
LEU
25
y
25
LEU
25
A
CYS
26
n
26
CYS
26
A
ALA
27
n
27
ALA
27
A
THR
28
n
28
THR
28
A
TYR
29
n
29
TYR
29
A
THR
30
n
30
THR
30
A
GLY
31
n
31
GLY
31
A
CYS
32
n
32
CYS
32
A
ILE
33
n
33
ILE
33
A
ILE
34
n
34
ILE
34
A
ILE
35
n
35
ILE
35
A
PRO
36
n
36
PRO
36
A
GLY
37
n
37
GLY
37
A
ALA
38
n
38
ALA
38
A
THR
39
n
39
THR
39
A
CYS
40
n
40
CYS
40
A
PRO
41
n
41
PRO
41
A
GLY
42
n
42
GLY
42
A
ASP
43
n
43
ASP
43
A
TYR
44
n
44
TYR
44
A
ALA
45
n
45
ALA
45
A
ASN
46
n
46
ASN
46
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
CYS
3
A
N
CYS
3
A
O
ILE
33
A
O
ILE
33
1
-11.39
1.40
112.40
101.01
A
A
A
CA
CB
CG2
THR
THR
THR
2
2
2
B
B
B
N
1
-14.12
2.00
111.60
97.48
A
A
A
CB
CA
C
ILE
ILE
ILE
7
7
7
B
B
N
1
13.73
2.20
111.40
125.13
A
A
A
CG1
CB
CG2
ILE
ILE
ILE
34
34
34
B
N
1
-19.55
2.80
113.90
94.35
A
A
A
CB
CG1
CD1
ILE
ILE
ILE
34
34
34
B
B
N
1
A
A
CA
CB
THR
THR
2
2
0.166
0.026
1.529
1.695
B
B
N
1
A
A
N
CA
ILE
ILE
7
7
0.142
0.020
1.459
1.601
B
N
1
A
A
CA
C
ILE
ILE
7
7
0.213
0.026
1.525
1.738
B
N
1
A
A
CB
CG1
ILE
ILE
34
34
0.486
0.028
1.536
2.022
B
N
5.5
OVERALL WEIGHT WAS 1/(SIGDEL) AND SIGDEL=8-10(SINTH/L-0.166667). WITH PROLSQ, NO RFREE WAS CALCULATED. ********* STEREOCHEMISTRY REMARKS: BECAUSE discretely disordered (MULTIPLE SUBSTATE) PROTEIN RESIDUES EACH HAVE OCCUPANCY LESS THAN ONE, THEY ARE DIFFICULT TO ACCURATELY REFINE. THE GEOMETRY CAN BE DISTORTED (IS POORLY DETERMINED).
0.09
0.09
0.09
0.99
17.67
7043
91.9
1
DIFFERENCE DENSITY PEAKS
2.0
2
1JXY. CRAMBIN MIXED ISOFORM AT 220 K.
0.06
17.67
0.99
17.67
0
344
3
0
341
0.019
0.02
0.039
0.04
0.047
0.050
0.006
0.010
0.158
1.0
0.175
1.5
0.176
1.0
0.116
1.5
0.009
0.020
0.057
0.050
0.146
0.50
0.072
0.5
0.129
0.5
5
3.0
10
15.0
16
20.0
0.0
15.
0.99
17.67
1JXU
7272
7272
0.0
0.0
1
17.2
1
92
0.99
1.00
4.4
1
1.
.162
data collection
LEHMANN-LARSEN
data reduction
TEXSAN
refinement
PROLSQ
data reduction
LEHMANN-LARSEN
data scaling
TEXSAN
CRAMBIN MIXED SEQUENCE FORM AT 240 K. PROTEIN/WATER SUBSTATES
1
N
N
2
N
N
Biological assembly not known.
A
SER
6
A
SER
6
HELX_P
A
LEU
18
A
LEU
18
1
1
13
A
SER
22
A
SER
22
HELX_P
A
GLY
31
A
GLY
31
1
2
10
disulf
2.042
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
40
A
SG
CYS
40
1_555
disulf
2.050
A
CYS
4
A
SG
CYS
4
1_555
A
CYS
32
A
SG
CYS
32
1_555
disulf
2.041
A
CYS
16
A
SG
CYS
16
1_555
A
CYS
26
A
SG
CYS
26
1_555
PLANT PROTEIN
WATER, SUBSTATE, FUNCTION, PLANT PROTEIN
CRAM_CRAAB
UNP
1
1
P01542
TTCCPSIVARSNFNVCRLPGTPEALCATYTGCIIIPGATCPGDYAN
1
46
1JXU
1
46
P01542
A
1
1
46
1
PRO
microheterogeneity
SER
22
1JXU
A
P01542
UNP
22
22
1
LEU
microheterogeneity
ILE
25
1JXU
A
P01542
UNP
25
25
2
anti-parallel
A
THR
2
A
THR
2
A
CYS
3
A
CYS
3
A
ILE
33
A
ILE
33
A
ILE
34
A
ILE
34
BINDING SITE FOR RESIDUE EOH A 66
A
EOH
66
Software
1
A
ASN
46
A
ASN
46
1
1_555
4
P 1 21 1