0.024474 0.000000 0.000290 0.000000 0.053996 0.000000 0.000000 0.000000 0.044666 0.00000 0.00000 0.00000 Teeter, M.M. Yamano, A. Stec, B. Mohanty, U. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 90.68 90.00 40.860 18.520 22.390 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O 46.068 ETHANOL non-polymer C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N C N 89 N C N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N N N 98 S C N 99 N C N 100 N O N 101 N C N 102 N C N 103 N C N 104 N O N 105 N O N 106 N O N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N N N 117 N C N 118 N C N 119 N O N 120 N O N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N N N 127 S C N 128 N C N 129 N O N 130 S C N 131 N C N 132 N C N 133 N C N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N N N 149 S C N 150 N C N 151 N O N 152 N C N 153 N C N 154 N C N 155 N C N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C Y 175 N C Y 176 N C Y 177 N C Y 178 N C Y 179 N C Y 180 N C N 181 N O N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C N 198 N C N 199 N C N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 N C N 215 N O N 216 N O N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N N N 225 S C N 226 N C N 227 N O N 228 R C N 229 N O N 230 N C N 231 N O N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N N N 242 S C N 243 N C N 244 N O N 245 N C Y 246 N C Y 247 N C Y 248 N C Y 249 N C Y 250 N C Y 251 N C N 252 N O N 253 N O N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N N N 266 S C N 267 N C N 268 N O N 269 N C N 270 N C N 271 N C N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing Y 171 N doub Y 172 N sing Y 173 N sing N 174 N sing Y 175 N doub N 176 N sing Y 177 N doub N 178 N sing Y 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N doub N 236 N sing N 237 N sing N 238 N sing N 239 N sing Y 240 N doub Y 241 N sing Y 242 N sing N 243 N sing Y 244 N doub N 245 N sing Y 246 N doub N 247 N sing Y 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 98 11242 11247 10.1073/pnas.201404398 11572978 On the nature of a glassy state of matter in a hydrated protein: Relation to protein function. 2001 10.2210/pdb1jxw/pdb pdb_00001jxw 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 180.0 1 COLLIMATOR DIFFRACTOMETER 1990-12-12 RIGAKU AFC-5R MO SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 4728.410 Crambin 1 nat polymer 46.068 ETHANOL 1 syn non-polymer no no TTCCPSIVARSNFNVCRLPGTSEAICATYTGCIIIPGATCPGDYAN TTCCPSIVARSNFNVCRLPGTSEAICATYTGCIIIPGATCPGDYAN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n y y n n y y n n n n n n n n n n n n n n n n n n n n n Crambe sample 3721 Crambe hispanica subsp. abyssinica Crambe hispanica subsp. abyssinica 1 1.40 30.0 VALUES OF F/SIGF ARE GIVEN ABOVE RATHER THAN I/SIGI. VAPOR DIFFUSION, SITTING DROP 7.00 ethanol, pH 7.00, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Version format compliance Atomic model Version format compliance Atomic model Other Data collection Database references Derived calculations Refinement description 1 0 2001-10-31 1 1 2008-04-27 1 2 2011-07-13 1 3 2014-02-05 1 4 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1crn is Crambin mixed sequence isoform at 293 K 1ab1 is Crambin pure Ser22/Ile25 isoform at 150 K 1cnr is Crambin pure Pro22/Leu25 isoform at 150 K 1cbn is Crambin mixed sequence isoform at 130 K and 0.83 A 1ejg is Crambin mixed sequence isoform at 100 K and 0.54 A 1JXT IS MIXED SEQUENCE isoFORM of crambin AT 160 K, the same crystal. 1JXU IS MIXED SEQUENCE isoFORM of crambin AT 240 K, the same crystal. 1JXX IS MIXED SEQUENCE isoFORM of crambin AT 200 K, the same crystal. 1JXY IS MIXED SEQUENCE isoFORM of crambin AT 220 K, the same crystal. RCSB Y RCSB 2001-09-10 REL REL EOH ETHANOL 1JXT 1JXT. CRAMBIN MIXED FORM AT 160 K. PDB experimental model EOH 66 2 EOH EOH 66 A THR 1 n 1 THR 1 A THR 2 n 2 THR 2 A CYS 3 n 3 CYS 3 A CYS 4 n 4 CYS 4 A PRO 5 n 5 PRO 5 A SER 6 n 6 SER 6 A ILE 7 n 7 ILE 7 A VAL 8 n 8 VAL 8 A ALA 9 n 9 ALA 9 A ARG 10 n 10 ARG 10 A SER 11 n 11 SER 11 A ASN 12 n 12 ASN 12 A PHE 13 n 13 PHE 13 A ASN 14 n 14 ASN 14 A VAL 15 n 15 VAL 15 A CYS 16 n 16 CYS 16 A ARG 17 n 17 ARG 17 A LEU 18 n 18 LEU 18 A PRO 19 n 19 PRO 19 A GLY 20 n 20 GLY 20 A THR 21 n 21 THR 21 A SER 22 y 22 SER 22 A PRO 22 y 22 PRO 22 A GLU 23 n 23 GLU 23 A ALA 24 n 24 ALA 24 A ILE 25 y 25 ILE 25 A LEU 25 y 25 LEU 25 A CYS 26 n 26 CYS 26 A ALA 27 n 27 ALA 27 A THR 28 n 28 THR 28 A TYR 29 n 29 TYR 29 A THR 30 n 30 THR 30 A GLY 31 n 31 GLY 31 A CYS 32 n 32 CYS 32 A ILE 33 n 33 ILE 33 A ILE 34 n 34 ILE 34 A ILE 35 n 35 ILE 35 A PRO 36 n 36 PRO 36 A GLY 37 n 37 GLY 37 A ALA 38 n 38 ALA 38 A THR 39 n 39 THR 39 A CYS 40 n 40 CYS 40 A PRO 41 n 41 PRO 41 A GLY 42 n 42 GLY 42 A ASP 43 n 43 ASP 43 A TYR 44 n 44 TYR 44 A ALA 45 n 45 ALA 45 A ASN 46 n 46 ASN 46 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N CYS 3 A N CYS 3 A O ILE 33 A O ILE 33 1 -11.04 1.40 112.40 101.36 A A A CA CB CG2 THR THR THR 2 2 2 B B B N 1 15.31 1.90 111.40 126.71 A A A CB CA C VAL VAL VAL 8 8 8 C C N 1 -14.31 2.20 111.50 97.19 A A A N CA CB VAL VAL VAL 8 8 8 C C N 1 -10.51 1.50 110.50 99.99 A A A N CA CB SER SER SER 22 22 22 C C C N 1 -17.44 2.70 111.20 93.76 A A A CA CB OG SER SER SER 22 22 22 C C C N 1 19.30 2.70 111.60 130.90 A A A CB CA C THR THR THR 30 30 30 B B N 1 -14.31 2.10 109.00 94.69 A A A CA CB OG1 THR THR THR 30 30 30 B B B N 1 12.74 1.40 112.40 125.14 A A A CA CB CG2 THR THR THR 30 30 30 B B B N 1 -23.27 2.50 121.70 98.43 A A A C N CA ALA THR THR 38 39 39 B Y 1 -20.30 2.70 111.60 91.30 A A A CB CA C THR THR THR 39 39 39 B B N 1 -14.12 1.90 110.30 96.18 A A A N CA CB THR THR THR 39 39 39 B B N 1 -12.14 1.40 112.40 100.26 A A A CA CB CG2 THR THR THR 39 39 39 B B B N 1 15.34 2.10 120.10 135.44 A A A CA C O THR THR THR 39 39 39 B N 1 -20.27 2.20 117.20 96.93 A A A CA C N THR THR CYS 39 39 40 B Y 1 -13.56 1.80 110.60 97.04 A A A N CA CB ASP ASP ASP 43 43 43 B B N 1 -5.98 0.90 118.30 112.32 A A A CB CG OD2 ASP ASP ASP 43 43 43 B B B N 1 A A CA CB THR THR 2 2 0.173 0.026 1.529 1.702 B B N 1 A A N CA VAL VAL 8 8 -0.159 0.020 1.459 1.300 B N 1 A A N CA VAL VAL 8 8 0.135 0.020 1.459 1.594 C N 1 A A CA C VAL VAL 8 8 0.208 0.026 1.525 1.733 B N 1 A A CA C VAL VAL 8 8 -0.177 0.026 1.525 1.348 C N 1 A A CB OG SER SER 22 22 -0.163 0.013 1.418 1.255 B B N 1 A A CB OG SER SER 22 22 0.093 0.013 1.418 1.511 C C N 1 A A N CA THR THR 30 30 0.139 0.020 1.459 1.598 B N 1 A A CA CB THR THR 30 30 0.173 0.026 1.529 1.702 B B N 1 A A CA CB THR THR 39 39 0.160 0.026 1.529 1.689 B B N 1 A A CA C THR THR 39 39 0.375 0.026 1.525 1.900 B N 1 A A CA CB ASP ASP 43 43 0.220 0.022 1.535 1.755 B B N 4 OVERALL WEIGHT WAS 1/(SIGDEL) AND SIGDEL=8-10(SINTH/L-0.166667). WITH PROLSQ, NO RFREE WAS CALCULATED. ********* STEREOCHEMISTRY REMARKS: BECAUSE discretely disordered (MULTIPLE SUBSTATE) PROTEIN RESIDUES EACH HAVE OCCUPANCY LESS THAN ONE, THEY ARE DIFFICULT TO ACCURATELY REFINE. THE GEOMETRY CAN BE DISTORTED (IS POORLY DETERMINED). IN THE CASE OF THR39, THE BACKBONE IS CLEARLY DISORDERED, WITH VERY SMALL DEVIATIONS BETWEEN SUBSTATES (~0.1 A), AND THAT WAS NOT INCLUDED IN THE MODEL. HENCE THEre may be LARGE ERRORS INVOLVING CA. 0.137 0.137 0.89 17.67 23365 89 1 DIFFERENCE DENSITY PEAKS 2.0 1JXT. CRAMBIN MIXED FORM AT 160 K. 0.06 17.67 0.89 17.67 0 344 3 0 341 0.013 0.02 0.035 0.04 0.058 0.050 0.006 0.010 0.115 1.0 0.117 1.5 0.144 1.0 0.152 1.5 0.010 0.020 0.057 0.050 0.149 0.50 0.165 0.5 0.040 0.5 0.05 0.5 5.0 3.0 9.4 15.0 12.8 20.0 0.0 15. 3.68 0.89 17.67 1JXW 26469 26469 0.0 0.0 1 10.6 1. 91 0.89 0.91 2.7 1 59 data collection LEHMANN-LARSEN data reduction TEXSAN refinement PROLSQ data reduction LEHMANN-LARSEN data scaling TEXSAN CRAMBIN MIXED SEQUENCE FORM AT 180 K. PROTEIN/WATER SUBSTATES 1 N N 2 N N Not known but may be monomer A SER 6 A SER 6 HELX_P A LEU 18 A LEU 18 1 1 13 A SER 22 A SER 22 HELX_P A GLY 31 A GLY 31 1 2 10 disulf 2.030 A CYS 3 A SG CYS 3 1_555 A CYS 40 A SG CYS 40 1_555 disulf 2.055 A CYS 4 A SG CYS 4 1_555 A CYS 32 A SG CYS 32 1_555 disulf 2.043 A CYS 16 A SG CYS 16 1_555 A CYS 26 A SG CYS 26 1_555 PLANT PROTEIN WATER, SUBSTATE, FUNCTION, PLANT PROTEIN CRAM_CRAAB UNP 1 1 P01542 TTCCPSIVARSNFNVCRLPGTPEALCATYTGCIIIPGATCPGDYAN 1 46 1JXW 1 46 P01542 A 1 1 46 1 PRO microheterogeneity SER 22 1JXW A P01542 UNP 22 22 1 LEU microheterogeneity ILE 25 1JXW A P01542 UNP 25 25 2 anti-parallel A THR 2 A THR 2 A CYS 3 A CYS 3 A ILE 33 A ILE 33 A ILE 34 A ILE 34 BINDING SITE FOR RESIDUE EOH A 66 A EOH 66 Software 2 A ILE 7 A ILE 7 2 1_555 A ASN 46 A ASN 46 2 1_555 4 P 1 21 1