1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kim, C.-H. Kao, C.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK RNA RNARFU 2122 1355-8382 7 1476 1485 11680852 A mutant viral RNA promoter with an altered conformation retains efficient recognition by a viral RNA replicase through a solution-exposed adenine 2001 US Nat.Struct.Biol. NSBIEW 2024 1072-8368 7 415 423 10.1038/75202 RNA motifs that determine specificity between a viral replicase and its promoter 2000 UK J.Mol.Biol. JMOBAK 0070 0022-2836 307 827 839 10.1006/jmbi.2001.4497 Structural and Thermodynamic Studies on Mutant RNA motifs that impair the Specificity between a Viral Replicase and its Promoter 2001 10.2210/pdb1jzc/pdb pdb_00001jzc 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 mutant RNA triloop 5'AUG3'of the RNA promoter region 4172.541 5'-R(*GP*GP*UP*GP*CP*AP*UP*GP*GP*CP*AP*CP*C)-3' 1 syn polymer no no GGUGCAUGGCACC GGUGCAUGGCACC A polyribonucleotide n n n n n n n n n n n n n -31.226 1 19 A 1 A 13 -6.001 A_G1:C13_A 1 -16.074 -0.254 -0.114 -0.207 -14.949 1 19 A 2 A 12 -5.879 A_G2:C12_A 2 -24.390 -0.356 -0.148 -0.233 18.596 1 20 A 3 A 11 -8.560 A_U3:A11_A 3 -12.203 0.127 -0.271 -0.181 47.897 1 19 A 4 A 10 0.248 A_G4:C10_A 4 5.127 -0.458 0.376 -0.025 2.437 35.751 A A 1 2 10.070 A A 13 12 2.650 6.153 -0.864 -1.007 AA_G1G2:C12C13_AA 1 0.357 -0.584 35.233 -2.335 1.448 2.175 29.309 A A 2 3 4.341 A A 12 11 2.221 2.194 -0.378 -0.695 AA_G2U3:A11C12_AA 2 -0.946 1.871 29.213 -1.693 0.609 2.284 33.134 A A 3 4 6.889 A A 11 10 2.695 3.895 1.020 -1.233 AA_U3G4:C10A11_AA 3 -6.668 11.795 32.247 -2.669 -2.655 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-10-07 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name The Solution Structure of the stem-triloop in the RNA promoter region of the Brome Mosaic Virus genomic (+)-RNA The Solution Structure of the mutant stem-triloop in the RNA promoter region of the Brome Mosaic Virus genomic (+)-RNA The Solution Structure of the mutant stem-triloop in the RNA promoter region of the Brome Mosaic Virus genomic (+)-RNA The Solution Structure of the mutant stem-triloop in the RNA promoter region of the Brome Mosaic Virus genomic (+)-RNA RCSB Y RCSB 2001-09-14 REL REL This sequence is a mutant triloop of which the wild type is naturally occuring in Brome Mosaic Virus genomic RNA sample a strucutre averaged over these 17 calculated structures. 17 1 2D NOESY 2D NOESY DQF-COSY 2D NOESY 10 mM NaCl 6.5 ambient 293 K 10 mM NaCl 6.5 ambient 283 K simulated annealing restrained molecular dynamics minimized average structure 2 mM RNA triloop 13mer, 10mM Na Phosphate, pH=6.5 90% H2O/10% D2O 2 mM RNA triloop 13mer, 10mM Na Phosphate, pH=6.5 99.96% D2O Axel Brunger structure solution X-PLOR 3.1 collection XwinNMR collection UXNMR data analysis Felix Axel Brunger refinement X-PLOR 3.1 500 Bruker DRX 600 Bruker AMX G 1 n 1 G 1 A G 2 n 2 G 2 A U 3 n 3 U 3 A G 4 n 4 G 4 A C 5 n 5 C 5 A A 6 n 6 A 6 A U 7 n 7 U 7 A G 8 n 8 G 8 A G 9 n 9 G 9 A C 10 n 10 C 10 A A 11 n 11 A 11 A C 12 n 12 C 12 A C 13 n 13 C 13 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 minimized average THE SOLUTION STRUCTURE OF THE MUTANT 5'AUG3' TRILOOP IN THE RNA PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 13 A N3 C 13 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 13 A O2 C 13 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 13 A N4 C 13 1_555 hydrog G-A MISPAIR A G 2 A O6 G 2 1_555 A A 11 A N6 A 11 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 12 A N3 C 12 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 12 A O2 C 12 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 12 A N4 C 12 1_555 hydrog WATSON-CRICK A U 3 A N3 U 3 1_555 A A 11 A N1 A 11 1_555 hydrog WATSON-CRICK A U 3 A O4 U 3 1_555 A A 11 A N6 A 11 1_555 hydrog WATSON-CRICK A G 4 A N1 G 4 1_555 A C 10 A N3 C 10 1_555 hydrog WATSON-CRICK A G 4 A N2 G 4 1_555 A C 10 A O2 C 10 1_555 hydrog WATSON-CRICK A G 4 A O6 G 4 1_555 A C 10 A N4 C 10 1_555 RNA RNA, Brome Mosaic Virus, BMV, triloop, Replication, Promoter, RNA polymerase 1JZC PDB 1 1JZC 1 13 1JZC 1 13 1JZC A 1 1 13