1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kim, C.-H.
Kao, C.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
RNA
RNARFU
2122
1355-8382
7
1476
1485
11680852
A mutant viral RNA promoter with an altered conformation retains efficient
recognition by a viral RNA replicase through a solution-exposed adenine
2001
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
7
415
423
10.1038/75202
RNA motifs that determine specificity between a viral replicase and its promoter
2000
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
307
827
839
10.1006/jmbi.2001.4497
Structural and Thermodynamic Studies on Mutant RNA motifs that impair the Specificity between a Viral Replicase and its Promoter
2001
10.2210/pdb1jzc/pdb
pdb_00001jzc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
mutant RNA triloop 5'AUG3'of the RNA promoter region
4172.541
5'-R(*GP*GP*UP*GP*CP*AP*UP*GP*GP*CP*AP*CP*C)-3'
1
syn
polymer
no
no
GGUGCAUGGCACC
GGUGCAUGGCACC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
-31.226
1
19
A
1
A
13
-6.001
A_G1:C13_A
1
-16.074
-0.254
-0.114
-0.207
-14.949
1
19
A
2
A
12
-5.879
A_G2:C12_A
2
-24.390
-0.356
-0.148
-0.233
18.596
1
20
A
3
A
11
-8.560
A_U3:A11_A
3
-12.203
0.127
-0.271
-0.181
47.897
1
19
A
4
A
10
0.248
A_G4:C10_A
4
5.127
-0.458
0.376
-0.025
2.437
35.751
A
A
1
2
10.070
A
A
13
12
2.650
6.153
-0.864
-1.007
AA_G1G2:C12C13_AA
1
0.357
-0.584
35.233
-2.335
1.448
2.175
29.309
A
A
2
3
4.341
A
A
12
11
2.221
2.194
-0.378
-0.695
AA_G2U3:A11C12_AA
2
-0.946
1.871
29.213
-1.693
0.609
2.284
33.134
A
A
3
4
6.889
A
A
11
10
2.695
3.895
1.020
-1.233
AA_U3G4:C10A11_AA
3
-6.668
11.795
32.247
-2.669
-2.655
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-10-07
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
The Solution Structure of the stem-triloop in the RNA promoter region of the Brome Mosaic Virus genomic (+)-RNA
The Solution Structure of the mutant stem-triloop in the RNA promoter region of the Brome Mosaic Virus genomic (+)-RNA
The Solution Structure of the mutant stem-triloop in the RNA promoter region of the Brome Mosaic Virus genomic (+)-RNA
The Solution Structure of the mutant stem-triloop in the RNA promoter region of the Brome Mosaic Virus genomic (+)-RNA
RCSB
Y
RCSB
2001-09-14
REL
REL
This sequence is a mutant triloop of which the wild type is naturally occuring in Brome Mosaic Virus genomic RNA
sample
a strucutre averaged over these 17 calculated structures.
17
1
2D NOESY
2D NOESY
DQF-COSY
2D NOESY
10 mM NaCl
6.5
ambient
293
K
10 mM NaCl
6.5
ambient
283
K
simulated annealing
restrained molecular dynamics
minimized average structure
2 mM RNA triloop 13mer,
10mM Na Phosphate, pH=6.5
90% H2O/10% D2O
2 mM RNA triloop 13mer,
10mM Na Phosphate, pH=6.5
99.96% D2O
Axel Brunger
structure solution
X-PLOR
3.1
collection
XwinNMR
collection
UXNMR
data analysis
Felix
Axel Brunger
refinement
X-PLOR
3.1
500
Bruker
DRX
600
Bruker
AMX
G
1
n
1
G
1
A
G
2
n
2
G
2
A
U
3
n
3
U
3
A
G
4
n
4
G
4
A
C
5
n
5
C
5
A
A
6
n
6
A
6
A
U
7
n
7
U
7
A
G
8
n
8
G
8
A
G
9
n
9
G
9
A
C
10
n
10
C
10
A
A
11
n
11
A
11
A
C
12
n
12
C
12
A
C
13
n
13
C
13
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
minimized average
THE SOLUTION STRUCTURE OF THE MUTANT 5'AUG3' TRILOOP IN THE RNA PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
13
A
N3
C
13
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
13
A
O2
C
13
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
13
A
N4
C
13
1_555
hydrog
G-A MISPAIR
A
G
2
A
O6
G
2
1_555
A
A
11
A
N6
A
11
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
12
A
N3
C
12
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
12
A
O2
C
12
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
12
A
N4
C
12
1_555
hydrog
WATSON-CRICK
A
U
3
A
N3
U
3
1_555
A
A
11
A
N1
A
11
1_555
hydrog
WATSON-CRICK
A
U
3
A
O4
U
3
1_555
A
A
11
A
N6
A
11
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
A
C
10
A
N3
C
10
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
A
C
10
A
O2
C
10
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
A
C
10
A
N4
C
10
1_555
RNA
RNA, Brome Mosaic Virus, BMV, triloop, Replication, Promoter, RNA polymerase
1JZC
PDB
1
1JZC
1
13
1JZC
1
13
1JZC
A
1
1
13