2.13 -4.337 -11.083 -6.294 A O5' G 1 ATOM A O5' G 1 1 1.00 1 O 2.29 -5.629 -11.603 -6.617 A C5' G 1 ATOM A C5' G 1 1 1.00 1 C 2.23 -6.489 -11.784 -5.370 A C4' G 1 ATOM A C4' G 1 1 1.00 1 C 2.28 -5.812 -12.662 -4.456 A O4' G 1 ATOM A O4' G 1 1 1.00 1 O 1.97 -6.740 -10.504 -4.578 A C3' G 1 ATOM A C3' G 1 1 1.00 1 C 1.97 -8.063 -10.064 -4.897 A O3' G 1 ATOM A O3' G 1 1 1.00 1 O 1.98 -6.762 -10.972 -3.133 A C2' G 1 ATOM A C2' G 1 1 1.00 1 C 2.14 -8.042 -11.516 -2.798 A O2' G 1 ATOM A O2' G 1 1 1.00 1 O 2.11 -5.704 -12.065 -3.157 A C1' G 1 ATOM A C1' G 1 1 1.00 1 C 1.95 -4.338 -11.534 -2.991 A N9 G 1 ATOM A N9 G 1 1 1.00 1 N 1.91 -3.293 -11.569 -3.880 A C8 G 1 ATOM A C8 G 1 1 1.00 1 C 1.75 -2.204 -11.009 -3.432 A N7 G 1 ATOM A N7 G 1 1 1.00 1 N 1.69 -2.550 -10.573 -2.158 A C5 G 1 ATOM A C5 G 1 1 1.00 1 C 1.56 -1.768 -9.889 -1.186 A C6 G 1 ATOM A C6 G 1 1 1.00 1 C 1.45 -0.595 -9.533 -1.266 A O6 G 1 ATOM A O6 G 1 1 1.00 1 O 1.60 -2.494 -9.632 -0.034 A N1 G 1 ATOM A N1 G 1 1 1.00 1 N 1.73 -3.810 -9.987 0.167 A C2 G 1 ATOM A C2 G 1 1 1.00 1 C 1.78 -4.351 -9.661 1.341 A N2 G 1 ATOM A N2 G 1 1 1.00 1 N 1.84 -4.554 -10.629 -0.740 A N3 G 1 ATOM A N3 G 1 1 1.00 1 N 1.82 -3.857 -10.888 -1.875 A C4 G 1 ATOM A C4 G 1 1 1.00 1 C 2.49 -5.511 -12.568 -7.110 A H5' G 1 ATOM A H5' G 1 1 1.00 1 H 2.29 -6.130 -10.915 -7.297 A H5'' G 1 ATOM A H5'' G 1 1 1.00 1 H 2.37 -7.435 -12.242 -5.661 A H4' G 1 ATOM A H4' G 1 1 1.00 1 H 1.84 -5.999 -9.727 -4.768 A H3' G 1 ATOM A H3' G 1 1 1.00 1 H 1.82 -6.481 -10.168 -2.454 A H2' G 1 ATOM A H2' G 1 1 1.00 1 H 2.45 -8.424 -10.952 -2.121 A HO2' G 1 ATOM A HO2' G 1 1 1.00 1 H 2.24 -5.899 -12.817 -2.392 A H1' G 1 ATOM A H1' G 1 1 1.00 1 H 2.02 -3.366 -12.023 -4.869 A H8 G 1 ATOM A H8 G 1 1 1.00 1 H 1.55 -2.016 -9.147 0.712 A H1 G 1 ATOM A H1 G 1 1 1.00 1 H 1.75 -3.812 -9.141 2.019 A H21 G 1 ATOM A H21 G 1 1 1.00 1 H 1.88 -5.300 -9.934 1.554 A H22 G 1 ATOM A H22 G 1 1 1.00 1 H 2.26 -3.941 -10.774 -7.113 A HO5' G 1 ATOM A HO5' G 1 1 1.00 1 H 1.77 -8.444 -8.501 -4.828 A P G 2 ATOM A P G 1 2 1.00 1 P 1.86 -9.851 -8.347 -5.263 A OP1 G 2 ATOM A OP1 G 1 2 1.00 1 O 1.66 -7.375 -7.732 -5.503 A OP2 G 2 ATOM A OP2 G 1 2 1.00 1 O 1.65 -8.369 -8.189 -3.250 A O5' G 2 ATOM A O5' G 1 2 1.00 1 O 1.76 -9.509 -8.403 -2.414 A C5' G 2 ATOM A C5' G 1 2 1.00 1 C 1.68 -9.285 -7.861 -1.005 A C4' G 2 ATOM A C4' G 1 2 1.00 1 C 1.66 -8.143 -8.505 -0.427 A O4' G 2 ATOM A O4' G 1 2 1.00 1 O 1.50 -8.950 -6.382 -0.934 A C3' G 2 ATOM A C3' G 1 2 1.00 1 C 1.53 -10.179 -5.673 -0.753 A O3' G 2 ATOM A O3' G 1 2 1.00 1 O 1.45 -8.174 -6.275 0.366 A C2' G 2 ATOM A C2' G 1 2 1.00 1 C 1.57 -9.066 -6.240 1.483 A O2' G 2 ATOM A O2' G 1 2 1.00 1 O 1.52 -7.374 -7.576 0.358 A C1' G 2 ATOM A C1' G 1 2 1.00 1 C 1.39 -6.045 -7.415 -0.265 A N9 G 2 ATOM A N9 G 1 2 1.00 1 N 1.36 -5.696 -7.562 -1.583 A C8 G 2 ATOM A C8 G 1 2 1.00 1 C 1.25 -4.431 -7.351 -1.818 A N7 G 2 ATOM A N7 G 1 2 1.00 1 N 1.20 -3.904 -7.042 -0.569 A C5 G 2 ATOM A C5 G 1 2 1.00 1 C 1.11 -2.569 -6.718 -0.198 A C6 G 2 ATOM A C6 G 1 2 1.00 1 C 1.02 -1.575 -6.641 -0.917 A O6 G 2 ATOM A O6 G 1 2 1.00 1 O 1.17 -2.462 -6.473 1.161 A N1 G 2 ATOM A N1 G 1 2 1.00 1 N 1.28 -3.503 -6.531 2.059 A C2 G 2 ATOM A C2 G 1 2 1.00 1 C 1.37 -3.216 -6.259 3.333 A N2 G 2 ATOM A N2 G 1 2 1.00 1 N 1.34 -4.761 -6.835 1.723 A N3 G 2 ATOM A N3 G 1 2 1.00 1 N 1.30 -4.885 -7.078 0.393 A C4 G 2 ATOM A C4 G 1 2 1.00 1 C 1.89 -9.711 -9.472 -2.355 A H5' G 2 ATOM A H5' G 1 2 1.00 1 H 1.80 -10.371 -7.902 -2.854 A H5'' G 2 ATOM A H5'' G 1 2 1.00 1 H 1.79 -10.162 -8.085 -0.398 A H4' G 2 ATOM A H4' G 1 2 1.00 1 H 1.41 -8.397 -6.021 -1.801 A H3' G 2 ATOM A H3' G 1 2 1.00 1 H 1.32 -7.514 -5.410 0.360 A H2' G 2 ATOM A H2' G 1 2 1.00 1 H 1.58 -9.959 -6.191 1.134 A HO2' G 2 ATOM A HO2' G 1 2 1.00 1 H 1.60 -7.254 -7.967 1.368 A H1' G 2 ATOM A H1' G 1 2 1.00 1 H 1.45 -6.411 -7.827 -2.362 A H8 G 2 ATOM A H8 G 1 2 1.00 1 H 1.15 -1.546 -6.234 1.514 A H1 G 2 ATOM A H1 G 1 2 1.00 1 H 1.36 -2.280 -5.980 3.591 A H21 G 2 ATOM A H21 G 1 2 1.00 1 H 1.46 -3.935 -6.331 4.039 A H22 G 2 ATOM A H22 G 1 2 1.00 1 H 1.45 -10.323 -4.147 -1.250 A P U 3 ATOM A P U 1 3 1.00 1 P 1.58 -11.722 -3.719 -1.032 A OP1 U 3 ATOM A OP1 U 1 3 1.00 1 O 1.38 -9.720 -4.040 -2.597 A OP2 U 3 ATOM A OP2 U 1 3 1.00 1 O 1.33 -9.384 -3.350 -0.212 A O5' U 3 ATOM A O5' U 1 3 1.00 1 O 1.40 -9.791 -3.181 1.148 A C5' U 3 ATOM A C5' U 1 3 1.00 1 C 1.30 -8.681 -2.578 2.003 A C4' U 3 ATOM A C4' U 1 3 1.00 1 C 1.28 -7.586 -3.492 2.081 A O4' U 3 ATOM A O4' U 1 3 1.00 1 O 1.12 -8.049 -1.321 1.443 A C3' U 3 ATOM A C3' U 1 3 1.00 1 C 1.15 -8.794 -0.208 1.943 A O3' U 3 ATOM A O3' U 1 3 1.00 1 O 1.07 -6.689 -1.293 2.124 A C2' U 3 ATOM A C2' U 1 3 1.00 1 C 1.18 -6.787 -0.696 3.420 A O2' U 3 ATOM A O2' U 1 3 1.00 1 O 1.15 -6.346 -2.780 2.242 A C1' U 3 ATOM A C1' U 1 3 1.00 1 C 1.03 -5.403 -3.213 1.178 A N1 U 3 ATOM A N1 U 1 3 1.00 1 N 1.00 -4.068 -3.388 1.515 A C2 U 3 ATOM A C2 U 1 3 1.00 1 C 1.10 -3.649 -3.214 2.657 A O2 U 3 ATOM A O2 U 1 3 1.00 1 O 0.90 -3.229 -3.773 0.488 A N3 U 3 ATOM A N3 U 1 3 1.00 1 N 0.84 -3.597 -3.995 -0.825 A C4 U 3 ATOM A C4 U 1 3 1.00 1 C 0.79 -2.754 -4.335 -1.652 A O4 U 3 ATOM A O4 U 1 3 1.00 1 O 0.92 -5.001 -3.793 -1.099 A C5 U 3 ATOM A C5 U 1 3 1.00 1 C 1.00 -5.843 -3.415 -0.104 A C6 U 3 ATOM A C6 U 1 3 1.00 1 C 1.53 -10.066 -4.152 1.559 A H5' U 3 ATOM A H5' U 1 3 1.00 1 H 1.44 -10.660 -2.524 1.180 A H5'' U 3 ATOM A H5'' U 1 3 1.00 1 H 1.39 -9.065 -2.399 3.007 A H4' U 3 ATOM A H4' U 1 3 1.00 1 H 1.06 -7.990 -1.313 0.355 A H3' U 3 ATOM A H3' U 1 3 1.00 1 H 0.94 -5.958 -0.777 1.509 A H2' U 3 ATOM A H2' U 1 3 1.00 1 H 1.33 -5.947 -0.270 3.602 A HO2' U 3 ATOM A HO2' U 1 3 1.00 1 H 1.24 -5.931 -3.004 3.227 A H1' U 3 ATOM A H1' U 1 3 1.00 1 H 0.90 -2.254 -3.903 0.718 A H3 U 3 ATOM A H3 U 1 3 1.00 1 H 0.95 -5.385 -3.944 -2.108 A H5 U 3 ATOM A H5 U 1 3 1.00 1 H 1.07 -6.897 -3.265 -0.332 A H6 U 3 ATOM A H6 U 1 3 1.00 1 H 1.10 -8.542 1.268 1.353 A P G 4 ATOM A P G 1 4 1.00 1 P 1.19 -9.385 2.220 2.111 A OP1 G 4 ATOM A OP1 G 1 4 1.00 1 O 1.09 -8.647 1.202 -0.122 A OP2 G 4 ATOM A OP2 G 1 4 1.00 1 O 1.07 -7.002 1.542 1.736 A O5' G 4 ATOM A O5' G 1 4 1.00 1 O 1.06 -6.669 2.158 2.982 A C5' G 4 ATOM A C5' G 1 4 1.00 1 C 0.84 -5.214 2.617 3.020 A C4' G 4 ATOM A C4' G 1 4 1.00 1 C 0.98 -4.348 1.480 2.917 A O4' G 4 ATOM A O4' G 1 4 1.00 1 O 0.51 -4.787 3.504 1.866 A C3' G 4 ATOM A C3' G 1 4 1.00 1 C 0.38 -5.018 4.858 2.267 A O3' G 4 ATOM A O3' G 1 4 1.00 1 O 0.50 -3.282 3.294 1.833 A C2' G 4 ATOM A C2' G 1 4 1.00 1 C 0.66 -2.647 4.078 2.847 A O2' G 4 ATOM A O2' G 1 4 1.00 1 O 0.75 -3.169 1.809 2.159 A C1' G 4 ATOM A C1' G 1 4 1.00 1 C 0.66 -3.123 0.951 0.956 A N9 G 4 ATOM A N9 G 1 4 1.00 1 N 0.69 -4.143 0.618 0.102 A C8 G 4 ATOM A C8 G 1 4 1.00 1 C 0.65 -3.779 -0.175 -0.869 A N7 G 4 ATOM A N7 G 1 4 1.00 1 N 0.55 -2.423 -0.385 -0.643 A C5 G 4 ATOM A C5 G 1 4 1.00 1 C 0.48 -1.486 -1.167 -1.377 A C6 G 4 ATOM A C6 G 1 4 1.00 1 C 0.49 -1.676 -1.834 -2.393 A O6 G 4 ATOM A O6 G 1 4 1.00 1 O 0.46 -0.222 -1.111 -0.813 A N1 G 4 ATOM A N1 G 1 4 1.00 1 N 0.56 0.109 -0.394 0.315 A C2 G 4 ATOM A C2 G 1 4 1.00 1 C 0.65 1.379 -0.454 0.715 A N2 G 4 ATOM A N2 G 1 4 1.00 1 N 0.62 -0.762 0.344 1.012 A N3 G 4 ATOM A N3 G 1 4 1.00 1 N 0.59 -2.008 0.300 0.475 A C4 G 4 ATOM A C4 G 1 4 1.00 1 C 1.38 -6.837 1.442 3.788 A H5' G 4 ATOM A H5' G 1 4 1.00 1 H 1.15 -7.316 3.022 3.134 A H5'' G 4 ATOM A H5'' G 1 4 1.00 1 H 0.90 -5.029 3.115 3.972 A H4' G 4 ATOM A H4' G 1 4 1.00 1 H 0.54 -5.281 3.264 0.924 A H3' G 4 ATOM A H3' G 1 4 1.00 1 H 0.36 -2.868 3.509 0.856 A H2' G 4 ATOM A H2' G 1 4 1.00 1 H 0.93 -2.888 4.994 2.693 A HO2' G 4 ATOM A HO2' G 1 4 1.00 1 H 0.92 -2.288 1.627 2.758 A H1' G 4 ATOM A H1' G 1 4 1.00 1 H 0.77 -5.164 0.972 0.229 A H8 G 4 ATOM A H8 G 1 4 1.00 1 H 0.42 0.509 -1.633 -1.273 A H1 G 4 ATOM A H1 G 1 4 1.00 1 H 0.61 2.056 -0.970 0.171 A H21 G 4 ATOM A H21 G 1 4 1.00 1 H 0.77 1.665 0.018 1.562 A H22 G 4 ATOM A H22 G 1 4 1.00 1 H 0.50 -5.874 5.856 1.336 A P C 5 ATOM A P C 1 5 1.00 1 P 0.95 -6.292 7.013 2.159 A OP1 C 5 ATOM A OP1 C 1 5 1.00 1 O 1.01 -6.890 5.060 0.612 A OP2 C 5 ATOM A OP2 C 1 5 1.00 1 O 0.25 -4.779 6.365 0.272 A O5' C 5 ATOM A O5' C 1 5 1.00 1 O 0.22 -3.824 7.364 0.637 A C5' C 5 ATOM A C5' C 1 5 1.00 1 C 0.14 -2.578 7.291 -0.227 A C4' C 5 ATOM A C4' C 1 5 1.00 1 C 0.17 -2.029 5.981 -0.134 A O4' C 5 ATOM A O4' C 1 5 1.00 1 O 0.17 -2.816 7.531 -1.703 A C3' C 5 ATOM A C3' C 1 5 1.00 1 C 0.27 -2.470 8.904 -1.975 A O3' C 5 ATOM A O3' C 1 5 1.00 1 O 0.14 -1.761 6.671 -2.375 A C2' C 5 ATOM A C2' C 1 5 1.00 1 C 0.17 -0.533 7.389 -2.521 A O2' C 5 ATOM A O2' C 1 5 1.00 1 O 0.16 -1.603 5.513 -1.412 A C1' C 5 ATOM A C1' C 1 5 1.00 1 C 0.26 -2.465 4.393 -1.816 A N1 C 5 ATOM A N1 C 1 5 1.00 1 N 0.46 -1.942 3.433 -2.661 A C2 C 5 ATOM A C2 C 1 5 1.00 1 C 0.59 -0.771 3.508 -3.021 A O2 C 5 ATOM A O2 C 1 5 1.00 1 O 0.57 -2.757 2.425 -3.084 A N3 C 5 ATOM A N3 C 1 5 1.00 1 N 0.48 -4.036 2.373 -2.686 A C4 C 5 ATOM A C4 C 1 5 1.00 1 C 0.60 -4.789 1.366 -3.129 A N4 C 5 ATOM A N4 C 1 5 1.00 1 N 0.31 -4.570 3.370 -1.810 A C5 C 5 ATOM A C5 C 1 5 1.00 1 C 0.21 -3.751 4.347 -1.406 A C6 C 5 ATOM A C6 C 1 5 1.00 1 C 0.36 -3.546 7.226 1.682 A H5' C 5 ATOM A H5' C 1 5 1.00 1 H 0.34 -4.271 8.341 0.514 A H5'' C 5 ATOM A H5'' C 1 5 1.00 1 H 0.18 -1.850 8.007 0.141 A H4' C 5 ATOM A H4' C 1 5 1.00 1 H 0.24 -3.832 7.298 -2.021 A H3' C 5 ATOM A H3' C 1 5 1.00 1 H 0.20 -2.119 6.298 -3.324 A H2' C 5 ATOM A H2' C 1 5 1.00 1 H 0.93 -0.641 7.993 -3.259 A HO2' C 5 ATOM A HO2' C 1 5 1.00 1 H 0.22 -0.573 5.195 -1.346 A H1' C 5 ATOM A H1' C 1 5 1.00 1 H 0.75 -4.382 0.652 -3.716 A H41 C 5 ATOM A H41 C 1 5 1.00 1 H 0.55 -5.766 1.318 -2.879 A H42 C 5 ATOM A H42 C 1 5 1.00 1 H 0.32 -5.604 3.354 -1.482 A H5 C 5 ATOM A H5 C 1 5 1.00 1 H 0.20 -4.111 5.106 -0.724 A H6 C 5 ATOM A H6 C 1 5 1.00 1 H 0.33 -2.967 10.114 -1.020 A P A 6 ATOM A P A 1 6 1.00 1 P 0.37 -4.423 9.961 -0.799 A OP1 A 6 ATOM A OP1 A 1 6 1.00 1 O 0.44 -2.432 11.383 -1.562 A OP2 A 6 ATOM A OP2 A 1 6 1.00 1 O 0.26 -2.208 9.796 0.371 A O5' A 6 ATOM A O5' A 1 6 1.00 1 O 0.35 -1.438 10.790 1.051 A C5' A 6 ATOM A C5' A 1 6 1.00 1 C 0.37 0.025 10.786 0.610 A C4' A 6 ATOM A C4' A 1 6 1.00 1 C 0.34 0.660 9.551 1.000 A O4' A 6 ATOM A O4' A 1 6 1.00 1 O 0.35 0.235 10.881 -0.900 A C3' A 6 ATOM A C3' A 1 6 1.00 1 C 0.42 1.418 11.657 -1.109 A O3' A 6 ATOM A O3' A 1 6 1.00 1 O 0.27 0.556 9.458 -1.318 A C2' A 6 ATOM A C2' A 1 6 1.00 1 C 0.30 1.368 9.438 -2.493 A O2' A 6 ATOM A O2' A 1 6 1.00 1 O 0.30 1.337 8.974 -0.123 A C1' A 6 ATOM A C1' A 1 6 1.00 1 C 0.26 1.338 7.506 -0.030 A N9 A 6 ATOM A N9 A 1 6 1.00 1 N 0.26 0.575 6.690 0.751 A C8 A 6 ATOM A C8 A 1 6 1.00 1 C 0.29 0.836 5.420 0.598 A N7 A 6 ATOM A N7 A 1 6 1.00 1 N 0.28 1.840 5.406 -0.362 A C5 A 6 ATOM A C5 A 1 6 1.00 1 C 0.31 2.558 4.370 -0.978 A C6 A 6 ATOM A C6 A 1 6 1.00 1 C 0.37 2.374 3.079 -0.703 A N6 A 6 ATOM A N6 A 1 6 1.00 1 N 0.31 3.480 4.712 -1.891 A N1 A 6 ATOM A N1 A 1 6 1.00 1 N 0.29 3.667 5.997 -2.166 A C2 A 6 ATOM A C2 A 1 6 1.00 1 C 0.28 3.065 7.054 -1.658 A N3 A 6 ATOM A N3 A 1 6 1.00 1 N 0.26 2.150 6.676 -0.750 A C4 A 6 ATOM A C4 A 1 6 1.00 1 C 0.38 -1.484 10.600 2.123 A H5' A 6 ATOM A H5' A 1 6 1.00 1 H 0.42 -1.866 11.770 0.846 A H5'' A 6 ATOM A H5'' A 1 6 1.00 1 H 0.45 0.535 11.609 1.109 A H4' A 6 ATOM A H4' A 1 6 1.00 1 H 0.38 -0.618 11.298 -1.426 A H3' A 6 ATOM A H3' A 1 6 1.00 1 H 0.22 -0.351 8.866 -1.446 A H2' A 6 ATOM A H2' A 1 6 1.00 1 H 0.48 1.177 8.621 -2.960 A HO2' A 6 ATOM A HO2' A 1 6 1.00 1 H 0.36 2.364 9.337 -0.153 A H1' A 6 ATOM A H1' A 1 6 1.00 1 H 0.27 -0.207 7.061 1.396 A H8 A 6 ATOM A H8 A 1 6 1.00 1 H 0.42 2.915 2.377 -1.188 A H61 A 6 ATOM A H61 A 1 6 1.00 1 H 0.38 1.694 2.802 -0.009 A H62 A 6 ATOM A H62 A 1 6 1.00 1 H 0.31 4.404 6.211 -2.929 A H2 A 6 ATOM A H2 A 1 6 1.00 1 H 0.52 1.325 13.121 -1.772 A P U 7 ATOM A P U 1 7 1.00 1 P 0.78 2.695 13.672 -1.874 A OP1 U 7 ATOM A OP1 U 1 7 1.00 1 O 0.97 0.273 13.884 -1.064 A OP2 U 7 ATOM A OP2 U 1 7 1.00 1 O 0.53 0.798 12.796 -3.261 A O5' U 7 ATOM A O5' U 1 7 1.00 1 O 0.43 1.199 11.598 -3.938 A C5' U 7 ATOM A C5' U 1 7 1.00 1 C 0.48 2.162 11.896 -5.082 A C4' U 7 ATOM A C4' U 1 7 1.00 1 C 0.45 3.392 12.394 -4.541 A O4' U 7 ATOM A O4' U 1 7 1.00 1 O 0.54 2.547 10.679 -5.920 A C3' U 7 ATOM A C3' U 1 7 1.00 1 C 0.77 2.723 11.137 -7.264 A O3' U 7 ATOM A O3' U 1 7 1.00 1 O 0.52 3.920 10.275 -5.403 A C2' U 7 ATOM A C2' U 1 7 1.00 1 C 0.78 4.698 9.690 -6.451 A O2' U 7 ATOM A O2' U 1 7 1.00 1 O 0.52 4.507 11.616 -4.989 A C1' U 7 ATOM A C1' U 1 7 1.00 1 C 0.50 5.471 11.491 -3.863 A N1 U 7 ATOM A N1 U 1 7 1.00 1 N 0.70 6.783 11.898 -4.068 A C2 U 7 ATOM A C2 U 1 7 1.00 1 C 0.85 7.172 12.353 -5.142 A O2 U 7 ATOM A O2 U 1 7 1.00 1 O 0.77 7.635 11.769 -2.988 A N3 U 7 ATOM A N3 U 1 7 1.00 1 N 0.70 7.300 11.276 -1.741 A C4 U 7 ATOM A C4 U 1 7 1.00 1 C 0.85 8.151 11.208 -0.857 A O4 U 7 ATOM A O4 U 1 7 1.00 1 O 0.52 5.919 10.873 -1.603 A C5 U 7 ATOM A C5 U 1 7 1.00 1 C 0.39 5.065 10.992 -2.651 A C6 U 7 ATOM A C6 U 1 7 1.00 1 C 0.55 0.314 11.102 -4.336 A H5' U 7 ATOM A H5' U 1 7 1.00 1 H 0.30 1.686 10.928 -3.229 A H5'' U 7 ATOM A H5'' U 1 7 1.00 1 H 0.64 1.723 12.667 -5.715 A H4' U 7 ATOM A H4' U 1 7 1.00 1 H 0.56 1.818 9.874 -5.859 A H3' U 7 ATOM A H3' U 1 7 1.00 1 H 0.42 3.835 9.599 -4.554 A H2' U 7 ATOM A H2' U 1 7 1.00 1 H 0.89 4.096 9.473 -7.167 A HO2' U 7 ATOM A HO2' U 1 7 1.00 1 H 0.68 4.972 12.114 -5.842 A H1' U 7 ATOM A H1' U 1 7 1.00 1 H 0.92 8.592 12.063 -3.122 A H3 U 7 ATOM A H3 U 1 7 1.00 1 H 0.54 5.562 10.472 -0.654 A H5 U 7 ATOM A H5 U 1 7 1.00 1 H 0.28 4.027 10.686 -2.525 A H6 U 7 ATOM A H6 U 1 7 1.00 1 H 0.77 1.663 10.742 -8.411 A P G 8 ATOM A P G 1 8 1.00 1 P 1.62 2.403 10.121 -9.532 A OP1 G 8 ATOM A OP1 G 1 8 1.00 1 O 1.73 0.793 11.915 -8.660 A OP2 G 8 ATOM A OP2 G 1 8 1.00 1 O 0.66 0.780 9.597 -7.699 A O5' G 8 ATOM A O5' G 1 8 1.00 1 O 0.47 0.958 8.217 -8.041 A C5' G 8 ATOM A C5' G 1 8 1.00 1 C 0.27 1.805 7.483 -7.009 A C4' G 8 ATOM A C4' G 1 8 1.00 1 C 0.23 1.364 7.849 -5.693 A O4' G 8 ATOM A O4' G 1 8 1.00 1 O 0.31 1.684 5.953 -7.057 A C3' G 8 ATOM A C3' G 1 8 1.00 1 C 0.45 2.950 5.453 -7.473 A O3' G 8 ATOM A O3' G 1 8 1.00 1 O 0.23 1.508 5.556 -5.600 A C2' G 8 ATOM A C2' G 1 8 1.00 1 C 0.28 2.776 5.494 -4.942 A O2' G 8 ATOM A O2' G 1 8 1.00 1 O 0.21 0.703 6.738 -5.097 A C1' G 8 ATOM A C1' G 1 8 1.00 1 C 0.25 -0.711 6.749 -5.560 A N9 G 8 ATOM A N9 G 1 8 1.00 1 N 0.37 -1.417 5.782 -6.245 A C8 G 8 ATOM A C8 G 1 8 1.00 1 C 0.40 -2.642 6.126 -6.521 A N7 G 8 ATOM A N7 G 1 8 1.00 1 N 0.31 -2.767 7.402 -5.990 A C5 G 8 ATOM A C5 G 1 8 1.00 1 C 0.34 -3.885 8.279 -5.989 A C6 G 8 ATOM A C6 G 1 8 1.00 1 C 0.43 -5.002 8.090 -6.467 A O6 G 8 ATOM A O6 G 1 8 1.00 1 O 0.30 -3.598 9.473 -5.350 A N1 G 8 ATOM A N1 G 1 8 1.00 1 N 0.26 -2.386 9.791 -4.780 A C2 G 8 ATOM A C2 G 1 8 1.00 1 C 0.34 -2.287 10.988 -4.199 A N2 G 8 ATOM A N2 G 1 8 1.00 1 N 0.19 -1.327 8.974 -4.775 A N3 G 8 ATOM A N3 G 1 8 1.00 1 N 0.22 -1.591 7.798 -5.398 A C4 G 8 ATOM A C4 G 1 8 1.00 1 C 0.56 1.451 8.144 -9.011 A H5' G 8 ATOM A H5' G 1 8 1.00 1 H 0.50 -0.019 7.739 -8.101 A H5'' G 8 ATOM A H5'' G 1 8 1.00 1 H 0.32 2.845 7.785 -7.130 A H4' G 8 ATOM A H4' G 1 8 1.00 1 H 0.41 0.879 5.601 -7.702 A H3' G 8 ATOM A H3' G 1 8 1.00 1 H 0.26 0.964 4.620 -5.496 A H2' G 8 ATOM A H2' G 1 8 1.00 1 H 0.34 3.393 5.077 -5.549 A HO2' G 8 ATOM A HO2' G 1 8 1.00 1 H 0.23 0.749 6.814 -4.010 A H1' G 8 ATOM A H1' G 1 8 1.00 1 H 0.44 -0.997 4.824 -6.542 A H8 G 8 ATOM A H8 G 1 8 1.00 1 H 0.36 -4.338 10.159 -5.302 A H1 G 8 ATOM A H1 G 1 8 1.00 1 H 0.39 -3.051 11.646 -4.265 A H21 G 8 ATOM A H21 G 1 8 1.00 1 H 0.39 -1.448 11.237 -3.696 A H22 G 8 ATOM A H22 G 1 8 1.00 1 H 0.68 3.304 5.315 -9.034 A P G 9 ATOM A P G 1 9 1.00 1 P 0.98 3.428 6.673 -9.608 A OP1 G 9 ATOM A OP1 G 1 9 1.00 1 O 1.11 2.374 4.334 -9.637 A OP2 G 9 ATOM A OP2 G 1 9 1.00 1 O 0.60 4.765 4.654 -8.971 A O5' G 9 ATOM A O5' G 1 9 1.00 1 O 0.88 5.627 4.936 -7.865 A C5' G 9 ATOM A C5' G 1 9 1.00 1 C 0.70 5.562 3.852 -6.791 A C4' G 9 ATOM A C4' G 1 9 1.00 1 C 0.50 4.244 3.801 -6.207 A O4' G 9 ATOM A O4' G 1 9 1.00 1 O 0.70 5.841 2.438 -7.296 A C3' G 9 ATOM A C3' G 1 9 1.00 1 C 0.68 6.604 1.783 -6.284 A O3' G 9 ATOM A O3' G 1 9 1.00 1 O 0.58 4.474 1.773 -7.341 A C2' G 9 ATOM A C2' G 1 9 1.00 1 C 0.61 4.590 0.365 -7.121 A O2' G 9 ATOM A O2' G 1 9 1.00 1 O 0.42 3.764 2.451 -6.176 A C1' G 9 ATOM A C1' G 1 9 1.00 1 C 0.28 2.288 2.433 -6.319 A N9 G 9 ATOM A N9 G 1 9 1.00 1 N 0.26 1.532 2.738 -7.421 A C8 G 9 ATOM A C8 G 1 9 1.00 1 C 0.24 0.258 2.523 -7.266 A N7 G 9 ATOM A N7 G 1 9 1.00 1 N 0.19 0.152 2.050 -5.968 A C5 G 9 ATOM A C5 G 1 9 1.00 1 C 0.26 -1.000 1.648 -5.242 A C6 G 9 ATOM A C6 G 1 9 1.00 1 C 0.38 -2.170 1.629 -5.617 A O6 G 9 ATOM A O6 G 1 9 1.00 1 O 0.27 -0.678 1.239 -3.961 A N1 G 9 ATOM A N1 G 1 9 1.00 1 N 0.28 0.591 1.219 -3.434 A C2 G 9 ATOM A C2 G 1 9 1.00 1 C 0.37 0.697 0.870 -2.154 A N2 G 9 ATOM A N2 G 1 9 1.00 1 N 0.28 1.687 1.587 -4.108 A N3 G 9 ATOM A N3 G 1 9 1.00 1 N 0.22 1.390 1.992 -5.369 A C4 G 9 ATOM A C4 G 1 9 1.00 1 C 1.53 5.346 5.892 -7.422 A H5' G 9 ATOM A H5' G 1 9 1.00 1 H 1.48 6.650 5.005 -8.231 A H5'' G 9 ATOM A H5'' G 1 9 1.00 1 H 0.79 6.272 4.109 -6.007 A H4' G 9 ATOM A H4' G 1 9 1.00 1 H 0.84 6.356 2.421 -8.257 A H3' G 9 ATOM A H3' G 1 9 1.00 1 H 0.62 3.970 1.984 -8.284 A H2' G 9 ATOM A H2' G 1 9 1.00 1 H 0.70 4.656 -0.054 -7.984 A HO2' G 9 ATOM A HO2' G 1 9 1.00 1 H 0.43 4.042 1.989 -5.228 A H1' G 9 ATOM A H1' G 1 9 1.00 1 H 0.33 1.949 3.155 -8.327 A H8 G 9 ATOM A H8 G 1 9 1.00 1 H 0.34 -1.440 0.929 -3.374 A H1 G 9 ATOM A H1 G 1 9 1.00 1 H 0.41 -0.133 0.677 -1.615 A H21 G 9 ATOM A H21 G 1 9 1.00 1 H 0.44 1.606 0.809 -1.721 A H22 G 9 ATOM A H22 G 1 9 1.00 1 H 0.87 8.187 1.567 -6.477 A P C 10 ATOM A P C 1 10 1.00 1 P 0.90 8.884 2.188 -5.329 A OP1 C 10 ATOM A OP1 C 1 10 1.00 1 O 0.95 8.544 1.957 -7.859 A OP2 C 10 ATOM A OP2 C 1 10 1.00 1 O 1.01 8.327 -0.027 -6.351 A O5' C 10 ATOM A O5' C 1 10 1.00 1 O 0.91 7.268 -0.789 -5.771 A C5' C 10 ATOM A C5' C 1 10 1.00 1 C 0.82 6.972 -0.328 -4.340 A C4' C 10 ATOM A C4' C 1 10 1.00 1 C 0.66 5.771 0.457 -4.326 A O4' C 10 ATOM A O4' C 1 10 1.00 1 O 0.78 6.686 -1.443 -3.353 A C3' C 10 ATOM A C3' C 1 10 1.00 1 C 0.95 7.931 -1.794 -2.742 A O3' C 10 ATOM A O3' C 1 10 1.00 1 O 0.71 5.843 -0.756 -2.298 A C2' C 10 ATOM A C2' C 1 10 1.00 1 C 0.86 6.667 -0.013 -1.396 A O2' C 10 ATOM A O2' C 1 10 1.00 1 O 0.58 4.988 0.176 -3.147 A C1' C 10 ATOM A C1' C 1 10 1.00 1 C 0.43 3.717 -0.464 -3.549 A N1 C 10 ATOM A N1 C 1 10 1.00 1 N 0.40 2.820 -0.803 -2.549 A C2 C 10 ATOM A C2 C 1 10 1.00 1 C 0.51 3.096 -0.581 -1.371 A O2 C 10 ATOM A O2 C 1 10 1.00 1 O 0.30 1.638 -1.382 -2.897 A N3 C 10 ATOM A N3 C 1 10 1.00 1 N 0.25 1.346 -1.617 -4.183 A C4 C 10 ATOM A C4 C 1 10 1.00 1 C 0.27 0.171 -2.182 -4.461 A N4 C 10 ATOM A N4 C 1 10 1.00 1 N 0.31 2.270 -1.269 -5.221 A C5 C 10 ATOM A C5 C 1 10 1.00 1 C 0.39 3.435 -0.701 -4.857 A C6 C 10 ATOM A C6 C 1 10 1.00 1 C 1.00 7.553 -1.843 -5.766 A H5' C 10 ATOM A H5' C 1 10 1.00 1 H 0.82 6.371 -0.666 -6.377 A H5'' C 10 ATOM A H5'' C 1 10 1.00 1 H 0.93 7.800 0.287 -3.991 A H4' C 10 ATOM A H4' C 1 10 1.00 1 H 0.71 6.193 -2.303 -3.807 A H3' C 10 ATOM A H3' C 1 10 1.00 1 H 0.66 5.226 -1.473 -1.772 A H2' C 10 ATOM A H2' C 1 10 1.00 1 H 1.29 7.580 -0.180 -1.640 A HO2' C 10 ATOM A HO2' C 1 10 1.00 1 H 0.59 4.772 1.107 -2.618 A H1' C 10 ATOM A H1' C 1 10 1.00 1 H 0.31 -0.499 -2.347 -3.721 A H41 C 10 ATOM A H41 C 1 10 1.00 1 H 0.33 -0.052 -2.444 -5.411 A H42 C 10 ATOM A H42 C 1 10 1.00 1 H 0.36 2.041 -1.443 -6.273 A H5 C 10 ATOM A H5 C 1 10 1.00 1 H 0.47 4.173 -0.445 -5.610 A H6 C 10 ATOM A H6 C 1 10 1.00 1 H 0.93 8.034 -3.067 -1.763 A P A 11 ATOM A P A 1 11 1.00 1 P 1.09 9.423 -3.154 -1.261 A OP1 A 11 ATOM A OP1 A 1 11 1.00 1 O 0.82 7.423 -4.229 -2.448 A OP2 A 11 ATOM A OP2 A 1 11 1.00 1 O 0.90 7.080 -2.647 -0.537 A O5' A 11 ATOM A O5' A 1 11 1.00 1 O 1.06 7.614 -1.954 0.594 A C5' A 11 ATOM A C5' A 1 11 1.00 1 C 1.10 6.710 -2.099 1.814 A C4' A 11 ATOM A C4' A 1 11 1.00 1 C 1.02 5.409 -1.589 1.505 A O4' A 11 ATOM A O4' A 1 11 1.00 1 O 1.05 6.454 -3.532 2.238 A C3' A 11 ATOM A C3' A 1 11 1.00 1 C 1.19 7.401 -3.857 3.254 A O3' A 11 ATOM A O3' A 1 11 1.00 1 O 1.10 5.097 -3.476 2.913 A C2' A 11 ATOM A C2' A 1 11 1.00 1 C 1.31 5.239 -3.153 4.298 A O2' A 11 ATOM A O2' A 1 11 1.00 1 O 1.01 4.386 -2.356 2.165 A C1' A 11 ATOM A C1' A 1 11 1.00 1 C 0.87 3.473 -2.907 1.153 A N9 A 11 ATOM A N9 A 1 11 1.00 1 N 0.79 3.785 -3.427 -0.070 A C8 A 11 ATOM A C8 A 1 11 1.00 1 C 0.72 2.755 -3.890 -0.724 A N7 A 11 ATOM A N7 A 1 11 1.00 1 N 0.76 1.688 -3.660 0.136 A C5 A 11 ATOM A C5 A 1 11 1.00 1 C 0.76 0.313 -3.924 0.037 A C6 A 11 ATOM A C6 A 1 11 1.00 1 C 0.74 -0.250 -4.505 -1.023 A N6 A 11 ATOM A N6 A 1 11 1.00 1 N 0.84 -0.467 -3.570 1.070 A N1 A 11 ATOM A N1 A 1 11 1.00 1 N 0.92 0.088 -2.992 2.129 A C2 A 11 ATOM A C2 A 1 11 1.00 1 C 0.95 1.360 -2.689 2.343 A N3 A 11 ATOM A N3 A 1 11 1.00 1 N 0.85 2.113 -3.059 1.286 A C4 A 11 ATOM A C4 A 1 11 1.00 1 C 1.14 7.716 -0.897 0.348 A H5' A 11 ATOM A H5' A 1 11 1.00 1 H 1.14 8.597 -2.362 0.828 A H5'' A 11 ATOM A H5'' A 1 11 1.00 1 H 1.26 7.132 -1.523 2.638 A H4' A 11 ATOM A H4' A 1 11 1.00 1 H 0.94 6.493 -4.240 1.410 A H3' A 11 ATOM A H3' A 1 11 1.00 1 H 1.07 4.568 -4.414 2.775 A H2' A 11 ATOM A H2' A 1 11 1.00 1 H 1.77 6.173 -3.003 4.462 A HO2' A 11 ATOM A HO2' A 1 11 1.00 1 H 1.08 3.832 -1.714 2.849 A H1' A 11 ATOM A H1' A 1 11 1.00 1 H 0.80 4.804 -3.478 -0.444 A H8 A 11 ATOM A H8 A 1 11 1.00 1 H 0.77 -1.236 -4.725 -1.014 A H61 A 11 ATOM A H61 A 1 11 1.00 1 H 0.72 0.308 -4.726 -1.835 A H62 A 11 ATOM A H62 A 1 11 1.00 1 H 1.01 -0.595 -2.740 2.939 A H2 A 11 ATOM A H2 A 1 11 1.00 1 H 1.22 7.452 -5.347 3.862 A P C 12 ATOM A P C 1 12 1.00 1 P 1.35 8.386 -5.346 5.010 A OP1 C 12 ATOM A OP1 C 1 12 1.00 1 O 1.13 7.654 -6.297 2.745 A OP2 C 12 ATOM A OP2 C 1 12 1.00 1 O 1.28 5.956 -5.546 4.431 A O5' C 12 ATOM A O5' C 1 12 1.00 1 O 1.42 5.674 -5.282 5.807 A C5' C 12 ATOM A C5' C 1 12 1.00 1 C 1.47 4.176 -5.323 6.112 A C4' C 12 ATOM A C4' C 1 12 1.00 1 C 1.33 3.435 -4.764 5.027 A O4' C 12 ATOM A O4' C 1 12 1.00 1 O 1.53 3.580 -6.706 6.248 A C3' C 12 ATOM A C3' C 1 12 1.00 1 C 1.71 3.765 -7.119 7.604 A O3' C 12 ATOM A O3' C 1 12 1.00 1 O 1.53 2.098 -6.437 6.056 A C2' C 12 ATOM A C2' C 1 12 1.00 1 C 1.67 1.517 -5.964 7.273 A O2' C 12 ATOM A O2' C 1 12 1.00 1 O 1.35 2.109 -5.331 4.995 A C1' C 12 ATOM A C1' C 1 12 1.00 1 C 1.22 1.843 -5.860 3.632 A N1 C 12 ATOM A N1 C 1 12 1.00 1 N 1.19 0.554 -5.735 3.122 A C2 C 12 ATOM A C2 C 1 12 1.00 1 C 1.26 -0.328 -5.207 3.796 A O2 C 12 ATOM A O2 C 1 12 1.00 1 O 1.11 0.296 -6.208 1.871 A N3 C 12 ATOM A N3 C 1 12 1.00 1 N 1.07 1.263 -6.782 1.144 A C4 C 12 ATOM A C4 C 1 12 1.00 1 C 1.04 0.950 -7.216 -0.077 A N4 C 12 ATOM A N4 C 1 12 1.00 1 N 1.09 2.590 -6.918 1.662 A C5 C 12 ATOM A C5 C 1 12 1.00 1 C 1.16 2.835 -6.447 2.900 A C6 C 12 ATOM A C6 C 1 12 1.00 1 C 1.42 6.061 -4.295 6.062 A H5' C 12 ATOM A H5' C 1 12 1.00 1 H 1.53 6.179 -6.030 6.420 A H5'' C 12 ATOM A H5'' C 1 12 1.00 1 H 1.58 3.982 -4.737 7.010 A H4' C 12 ATOM A H4' C 1 12 1.00 1 H 1.46 3.985 -7.426 5.538 A H3' C 12 ATOM A H3' C 1 12 1.00 1 H 1.55 1.582 -7.322 5.691 A H2' C 12 ATOM A H2' C 1 12 1.00 1 H 2.01 2.196 -6.013 7.950 A HO2' C 12 ATOM A HO2' C 1 12 1.00 1 H 1.35 1.385 -4.553 5.243 A H1' C 12 ATOM A H1' C 1 12 1.00 1 H 1.05 0.011 -7.097 -0.431 A H41 C 12 ATOM A H41 C 1 12 1.00 1 H 1.03 1.652 -7.664 -0.650 A H42 C 12 ATOM A H42 C 1 12 1.00 1 H 1.07 3.384 -7.385 1.079 A H5 C 12 ATOM A H5 C 1 12 1.00 1 H 1.20 3.833 -6.547 3.326 A H6 C 12 ATOM A H6 C 1 12 1.00 1 H 1.85 3.789 -8.683 7.985 A P C 13 ATOM A P C 1 13 1.00 1 P 2.04 4.020 -8.800 9.442 A OP1 C 13 ATOM A OP1 C 1 13 1.00 1 O 1.75 4.690 -9.376 7.037 A OP2 C 13 ATOM A OP2 C 1 13 1.00 1 O 1.91 2.277 -9.145 7.675 A O5' C 13 ATOM A O5' C 1 13 1.00 1 O 2.03 1.204 -8.728 8.524 A C5' C 13 ATOM A C5' C 1 13 1.00 1 C 2.07 -0.156 -9.065 7.919 A C4' C 13 ATOM A C4' C 1 13 1.00 1 C 1.87 -0.303 -8.378 6.681 A O4' C 13 ATOM A O4' C 1 13 1.00 1 O 2.17 -0.345 -10.524 7.547 A C3' C 13 ATOM A C3' C 1 13 1.00 1 C 2.41 -0.773 -11.281 8.682 A O3' C 13 ATOM A O3' C 1 13 1.00 1 O 2.12 -1.460 -10.440 6.506 A C2' C 13 ATOM A C2' C 1 13 1.00 1 C 2.27 -2.739 -10.443 7.145 A O2' C 13 ATOM A O2' C 1 13 1.00 1 O 1.88 -1.207 -9.090 5.827 A C1' C 13 ATOM A C1' C 1 13 1.00 1 C 1.74 -0.571 -9.245 4.495 A N1 C 13 ATOM A N1 C 1 13 1.00 1 N 1.65 -1.371 -9.128 3.363 A C2 C 13 ATOM A C2 C 1 13 1.00 1 C 1.69 -2.573 -8.902 3.479 A O2 C 13 ATOM A O2 C 1 13 1.00 1 O 1.55 -0.795 -9.272 2.137 A N3 C 13 ATOM A N3 C 1 13 1.00 1 N 1.54 0.516 -9.522 2.023 A C4 C 13 ATOM A C4 C 1 13 1.00 1 C 1.47 1.022 -9.655 0.797 A N4 C 13 ATOM A N4 C 1 13 1.00 1 N 1.63 1.345 -9.643 3.183 A C5 C 13 ATOM A C5 C 1 13 1.00 1 C 1.73 0.764 -9.500 4.389 A C6 C 13 ATOM A C6 C 1 13 1.00 1 C 1.97 1.268 -7.651 8.674 A H5' C 13 ATOM A H5' C 1 13 1.00 1 H 2.19 1.298 -9.229 9.487 A H5'' C 13 ATOM A H5'' C 1 13 1.00 1 H 2.17 -0.939 -8.738 8.603 A H4' C 13 ATOM A H4' C 1 13 1.00 1 H 2.12 0.565 -10.940 7.114 A H3' C 13 ATOM A H3' C 1 13 1.00 1 H 2.59 -1.539 -10.835 9.050 A HO3' C 13 ATOM A HO3' C 1 13 1.00 1 H 2.16 -1.379 -11.255 5.787 A H2' C 13 ATOM A H2' C 1 13 1.00 1 H 2.54 -2.894 -9.555 7.477 A HO2' C 13 ATOM A HO2' C 1 13 1.00 1 H 1.84 -2.135 -8.519 5.738 A H1' C 13 ATOM A H1' C 1 13 1.00 1 H 1.44 0.432 -9.515 -0.011 A H41 C 13 ATOM A H41 C 1 13 1.00 1 H 1.48 1.995 -9.899 0.675 A H42 C 13 ATOM A H42 C 1 13 1.00 1 H 1.64 2.413 -9.845 3.101 A H5 C 13 ATOM A H5 C 1 13 1.00 1 H 1.82 1.365 -9.597 5.292 A H6 C 13 ATOM A H6 C 1 13 1.00 1 H 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kim, C.-H. Kao, C.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK RNA RNARFU 2122 1355-8382 7 1476 1485 11680852 A mutant viral RNA promoter with an altered conformation retains efficient recognition by a viral RNA replicase through a solution-exposed adenine 2001 US Nat.Struct.Biol. NSBIEW 2024 1072-8368 7 415 423 10.1038/75202 RNA motifs that determine specificity between a viral replicase and its promoter 2000 UK J.Mol.Biol. JMOBAK 0070 0022-2836 307 827 839 10.1006/jmbi.2001.4497 Structural and Thermodynamic Studies on Mutant RNA motifs that impair the Specificity between a Viral Replicase and its Promoter 2001 10.2210/pdb1jzc/pdb pdb_00001jzc 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 mutant RNA triloop 5'AUG3'of the RNA promoter region 4172.541 5'-R(*GP*GP*UP*GP*CP*AP*UP*GP*GP*CP*AP*CP*C)-3' 1 syn polymer no no GGUGCAUGGCACC GGUGCAUGGCACC A polyribonucleotide n n n n n n n n n n n n n -31.226 1 19 A 1 A 13 -6.001 A_G1:C13_A 1 -16.074 -0.254 -0.114 -0.207 -14.949 1 19 A 2 A 12 -5.879 A_G2:C12_A 2 -24.390 -0.356 -0.148 -0.233 18.596 1 20 A 3 A 11 -8.560 A_U3:A11_A 3 -12.203 0.127 -0.271 -0.181 47.897 1 19 A 4 A 10 0.248 A_G4:C10_A 4 5.127 -0.458 0.376 -0.025 2.437 35.751 A A 1 2 10.070 A A 13 12 2.650 6.153 -0.864 -1.007 AA_G1G2:C12C13_AA 1 0.357 -0.584 35.233 -2.335 1.448 2.175 29.309 A A 2 3 4.341 A A 12 11 2.221 2.194 -0.378 -0.695 AA_G2U3:A11C12_AA 2 -0.946 1.871 29.213 -1.693 0.609 2.284 33.134 A A 3 4 6.889 A A 11 10 2.695 3.895 1.020 -1.233 AA_U3G4:C10A11_AA 3 -6.668 11.795 32.247 -2.669 -2.655 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-10-07 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name The Solution Structure of the stem-triloop in the RNA promoter region of the Brome Mosaic Virus genomic (+)-RNA The Solution Structure of the mutant stem-triloop in the RNA promoter region of the Brome Mosaic Virus genomic (+)-RNA The Solution Structure of the mutant stem-triloop in the RNA promoter region of the Brome Mosaic Virus genomic (+)-RNA The Solution Structure of the mutant stem-triloop in the RNA promoter region of the Brome Mosaic Virus genomic (+)-RNA RCSB Y RCSB 2001-09-14 REL REL This sequence is a mutant triloop of which the wild type is naturally occuring in Brome Mosaic Virus genomic RNA sample a strucutre averaged over these 17 calculated structures. 17 1 2D NOESY 2D NOESY DQF-COSY 2D NOESY 10 mM NaCl 6.5 ambient 293 K 10 mM NaCl 6.5 ambient 283 K simulated annealing restrained molecular dynamics minimized average structure 2 mM RNA triloop 13mer, 10mM Na Phosphate, pH=6.5 90% H2O/10% D2O 2 mM RNA triloop 13mer, 10mM Na Phosphate, pH=6.5 99.96% D2O Axel Brunger structure solution X-PLOR 3.1 collection XwinNMR collection UXNMR data analysis Felix Axel Brunger refinement X-PLOR 3.1 500 Bruker DRX 600 Bruker AMX G 1 n 1 G 1 A G 2 n 2 G 2 A U 3 n 3 U 3 A G 4 n 4 G 4 A C 5 n 5 C 5 A A 6 n 6 A 6 A U 7 n 7 U 7 A G 8 n 8 G 8 A G 9 n 9 G 9 A C 10 n 10 C 10 A A 11 n 11 A 11 A C 12 n 12 C 12 A C 13 n 13 C 13 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 minimized average THE SOLUTION STRUCTURE OF THE MUTANT 5'AUG3' TRILOOP IN THE RNA PROMOTER REGION OF THE BROME MOSAIC VIRUS GENOMIC (+)-RNA 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 13 A N3 C 13 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 13 A O2 C 13 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 13 A N4 C 13 1_555 hydrog G-A MISPAIR A G 2 A O6 G 2 1_555 A A 11 A N6 A 11 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 12 A N3 C 12 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 12 A O2 C 12 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 12 A N4 C 12 1_555 hydrog WATSON-CRICK A U 3 A N3 U 3 1_555 A A 11 A N1 A 11 1_555 hydrog WATSON-CRICK A U 3 A O4 U 3 1_555 A A 11 A N6 A 11 1_555 hydrog WATSON-CRICK A G 4 A N1 G 4 1_555 A C 10 A N3 C 10 1_555 hydrog WATSON-CRICK A G 4 A N2 G 4 1_555 A C 10 A O2 C 10 1_555 hydrog WATSON-CRICK A G 4 A O6 G 4 1_555 A C 10 A N4 C 10 1_555 RNA RNA, Brome Mosaic Virus, BMV, triloop, Replication, Promoter, RNA polymerase 1JZC PDB 1 1JZC 1 13 1JZC 1 13 1JZC A 1 1 13