0.021834 0.000000 0.000000 0.000000 0.021834 0.000000 0.000000 0.000000 0.011154 0.00000 0.00000 0.00000 Xiong, Y. Sudarsanakumar, C. Deng, J. Pan, B. Sundaralingam, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 45.800 45.800 89.650 C9 H12 Br N2 O9 P 403.077 n 5-BROMO-URIDINE-5'-MONOPHOSPHATE RNA linking C9 H13 I N3 O8 P 449.093 n 5-IODO-CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N P N 2 N O N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C N 14 N N N 15 N C N 16 N O N 17 N N N 18 N C N 19 N O N 20 N C N 21 N C N 22 N BR N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 S C N 37 S C N 38 N O N 39 R C N 40 N O N 41 R C N 42 N N N 43 N C N 44 N C N 45 N I N 46 N C N 47 N N N 48 N C N 49 N O N 50 N N N 51 N C N 52 N O N 53 N P N 54 N O N 55 N O N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N O N 71 N P N 72 N O N 73 N O N 74 N O N 75 N C N 76 R C N 77 N O N 78 S C N 79 N O N 80 R C N 81 N O N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C Y 87 N C N 88 N N Y 89 N N Y 90 N C Y 91 N N Y 92 N C N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N O N 108 N P N 109 N O N 110 N O N 111 N O N 112 N C N 113 R C N 114 N O N 115 S C N 116 N O N 117 R C N 118 N O N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N N N 126 N C N 127 N C N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N O N 143 N P N 144 N O N 145 N O N 146 N O N 147 N C N 148 R C N 149 N O N 150 S C N 151 N O N 152 R C N 153 N O N 154 R C Y 155 N N Y 156 N C Y 157 N N Y 158 N C N 159 N C N 160 N O N 161 N N N 162 N C N 163 N N N 164 N N Y 165 N C N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N O N 181 N H N 182 N H N 183 N MG N 184 N O N 185 N P N 186 N O N 187 N O N 188 N O N 189 N C N 190 R C N 191 N O N 192 S C N 193 N O N 194 R C N 195 N O N 196 R C N 197 N N N 198 N C N 199 N O N 200 N N N 201 N C N 202 N O N 203 N C N 204 N C N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N doub N 28 N sing N 29 N sing N 30 N sing N 31 N doub N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N doub N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing Y 96 N sing Y 97 N sing Y 98 N doub N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N doub N 105 N sing N 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing Y 171 N sing Y 172 N sing Y 173 N doub N 174 N sing Y 175 N sing N 176 N sing Y 177 N doub N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N doub N 222 N sing N 223 N sing To be Published 0353 Crystal Structure of a Bulged RNA from the SL2 Stem-loop of the HIV-1 psi-RNA 10.2210/pdb1jzv/pdb pdb_00001jzv 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD ADSC QUANTUM 4 MAD M x-ray 1 0.9195 1.0 14-BM-D APS 0.9195 SYNCHROTRON APS BEAMLINE 14-BM-D SL2 STEM-LOOP OF THE HIV-1 PSI-RNA 2660.497 5'-R(*GP*GP*CP*GP*AP*CP*(5BU)P*G)-3' 2 syn polymer 2956.655 5'-R(*CP*AP*GP*UP*AP*CP*GP*(5IC)P*C)-3' 2 syn polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 81 nat water no yes GGCGAC(5BU)G GGCGACUG A,C polyribonucleotide no yes CAGUACG(5IC)C CAGUACGCC B,D polyribonucleotide n n n n n n n n n n n n n n n n n 1 2.09 41.22 VAPOR DIFFUSION, HANGING DROP 6.0 MPD, magnesium chloride, cacodylate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 MPD 1 MgCl2 2 cacodylate 3 -4.792 1 19 A 1 B 17 -3.201 A_G1:C17_B 1 -8.832 -0.221 0.035 -0.223 -4.921 1 19 A 2 B 16 1.326 A_G2:5IC16_B 2 -12.594 -0.522 0.076 -0.104 -0.620 1 19 A 3 B 15 1.263 A_C3:G15_B 3 -6.523 0.194 0.204 -0.185 8.927 1 19 A 4 B 14 2.316 A_G4:C14_B 4 0.354 -0.197 0.305 -0.162 10.080 1 20 A 5 B 12 -7.134 A_A5:U12_B 5 -14.818 0.090 0.077 0.027 8.752 1 19 A 6 B 11 4.043 A_C6:G11_B 6 -18.467 0.335 0.023 -0.093 5.821 1 20 A 7 B 10 2.835 A_5BU7:A10_B 7 -12.291 -0.124 -0.138 -0.116 5.538 1 19 A 8 B 9 -0.291 A_G8:C9_B 8 -7.456 -0.114 0.141 -0.144 -3.107 1 19 C 21 D 37 0.654 C_G21:C37_D 9 -14.951 -0.343 -0.017 -0.234 -10.612 1 19 C 22 D 36 3.748 C_G22:5IC36_D 10 -12.778 -0.620 -0.180 0.003 -4.713 1 19 C 23 D 35 -0.584 C_C23:G35_D 11 -9.240 0.121 -0.078 -0.074 8.079 1 19 C 24 D 34 2.467 C_G24:C34_D 12 0.694 -0.152 0.294 -0.081 9.865 1 20 C 25 D 32 -3.846 C_A25:U32_D 13 -15.159 0.099 0.057 -0.073 7.505 1 19 C 26 D 31 2.380 C_C26:G31_D 14 -18.315 0.405 0.142 -0.201 -3.322 1 20 C 27 D 30 1.938 C_5BU27:A30_D 15 -14.393 -0.258 -0.112 -0.125 -0.903 1 19 C 28 D 29 1.274 C_G28:C29_D 16 -2.730 -0.231 0.196 -0.120 2.798 32.669 A A 1 2 11.367 B B 17 16 3.166 6.355 0.160 -1.647 AA_G1G2:5IC16C17_BB 1 0.297 -0.531 32.060 -3.941 -0.237 3.168 33.455 A A 2 3 0.934 B B 16 15 3.180 0.538 0.619 -1.687 AA_G2C3:G155IC16_BB 2 0.870 -1.512 33.440 -3.017 -0.936 2.781 24.831 A A 3 4 2.298 B B 15 14 2.922 0.987 0.528 -2.104 AA_C3G4:C14G15_BB 3 -2.181 5.079 24.718 -5.153 -1.803 2.798 45.931 A A 4 5 8.136 B B 14 12 3.181 6.329 0.832 -2.398 AA_G4A5:U12C14_BB 4 -2.292 2.947 45.461 -3.575 -1.248 2.923 36.611 A A 5 6 7.212 B B 12 11 3.168 4.519 0.940 -1.715 AA_A5C6:G11U12_BB 5 -0.685 1.093 36.335 -3.311 -1.584 2.508 29.473 A A 6 7 17.538 B B 11 10 3.318 8.792 -0.740 -2.313 AA_C65BU7:A10G11_BB 6 -0.457 0.911 28.155 -6.257 1.365 2.351 32.918 A A 7 8 22.818 B B 10 9 3.190 12.605 -0.040 -1.608 AA_5BU7G8:C9A10_BB 7 -2.419 4.379 30.376 -4.738 -0.294 2.471 31.874 C C 21 22 19.098 D D 37 36 3.342 10.307 0.081 -2.200 CC_G21G22:5IC36C37_DD 8 -1.167 2.162 30.181 -5.722 -0.342 2.887 34.191 C C 22 23 11.157 D D 36 35 3.101 6.519 -0.824 -1.053 CC_G22C23:G355IC36_DD 9 -1.667 2.852 33.542 -2.742 1.158 2.082 26.102 C C 23 24 15.301 D D 35 34 2.882 6.811 1.089 -2.064 CC_C23G24:C34G35_DD 10 -3.554 7.983 24.964 -6.012 -3.164 2.333 42.737 C C 24 25 16.193 D D 34 32 3.130 11.662 0.998 -2.511 CC_G24A25:U32C34_DD 11 -1.400 1.944 41.164 -4.442 -1.489 2.946 36.821 C C 25 26 7.248 D D 32 31 3.183 4.567 0.697 -1.655 CC_A25C26:G31U32_DD 12 -0.804 1.276 36.538 -3.204 -1.206 2.449 29.370 C C 26 27 20.384 D D 31 30 3.497 10.124 -0.962 -2.285 CC_C265BU27:A30G31_DD 13 1.916 -3.858 27.541 -6.551 2.284 2.495 33.559 C C 27 28 18.176 D D 30 29 3.077 10.331 0.657 -1.377 CC_5BU27G28:C29A30_DD 14 -1.321 2.324 31.946 -3.867 -1.328 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2003-11-11 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2001-09-17 REL REL MG MAGNESIUM ION HOH water Solid phase phosphoramidite synthesis sample MG 300 3 MG MG 300 C HOH 316 4 HOH HOH 316 A HOH 319 4 HOH HOH 319 A HOH 322 4 HOH HOH 322 A HOH 327 4 HOH HOH 327 A HOH 328 4 HOH HOH 328 A HOH 332 4 HOH HOH 332 A HOH 333 4 HOH HOH 333 A HOH 336 4 HOH HOH 336 A HOH 342 4 HOH HOH 342 A HOH 343 4 HOH HOH 343 A HOH 355 4 HOH HOH 355 A HOH 361 4 HOH HOH 361 A HOH 363 4 HOH HOH 363 A HOH 365 4 HOH HOH 365 A HOH 368 4 HOH HOH 368 A HOH 369 4 HOH HOH 369 A HOH 373 4 HOH HOH 373 A HOH 307 4 HOH HOH 307 B HOH 308 4 HOH HOH 308 B HOH 312 4 HOH HOH 312 B HOH 314 4 HOH HOH 314 B HOH 315 4 HOH HOH 315 B HOH 321 4 HOH HOH 321 B HOH 326 4 HOH HOH 326 B HOH 330 4 HOH HOH 330 B HOH 334 4 HOH HOH 334 B HOH 335 4 HOH HOH 335 B HOH 344 4 HOH HOH 344 B HOH 345 4 HOH HOH 345 B HOH 346 4 HOH HOH 346 B HOH 350 4 HOH HOH 350 B HOH 351 4 HOH HOH 351 B HOH 352 4 HOH HOH 352 B HOH 353 4 HOH HOH 353 B HOH 358 4 HOH HOH 358 B HOH 359 4 HOH HOH 359 B HOH 364 4 HOH HOH 364 B HOH 366 4 HOH HOH 366 B HOH 367 4 HOH HOH 367 B HOH 377 4 HOH HOH 377 B HOH 378 4 HOH HOH 378 B HOH 301 4 HOH HOH 301 C HOH 302 4 HOH HOH 302 C HOH 303 4 HOH HOH 303 C HOH 304 4 HOH HOH 304 C HOH 306 4 HOH HOH 306 C HOH 309 4 HOH HOH 309 C HOH 313 4 HOH HOH 313 C HOH 317 4 HOH HOH 317 C HOH 323 4 HOH HOH 323 C HOH 324 4 HOH HOH 324 C HOH 329 4 HOH HOH 329 C HOH 337 4 HOH HOH 337 C HOH 338 4 HOH HOH 338 C HOH 339 4 HOH HOH 339 C HOH 347 4 HOH HOH 347 C HOH 357 4 HOH HOH 357 C HOH 362 4 HOH HOH 362 C HOH 371 4 HOH HOH 371 C HOH 305 4 HOH HOH 305 D HOH 310 4 HOH HOH 310 D HOH 311 4 HOH HOH 311 D HOH 318 4 HOH HOH 318 D HOH 320 4 HOH HOH 320 D HOH 325 4 HOH HOH 325 D HOH 331 4 HOH HOH 331 D HOH 340 4 HOH HOH 340 D HOH 341 4 HOH HOH 341 D HOH 348 4 HOH HOH 348 D HOH 349 4 HOH HOH 349 D HOH 354 4 HOH HOH 354 D HOH 356 4 HOH HOH 356 D HOH 360 4 HOH HOH 360 D HOH 370 4 HOH HOH 370 D HOH 372 4 HOH HOH 372 D HOH 374 4 HOH HOH 374 D HOH 375 4 HOH HOH 375 D HOH 376 4 HOH HOH 376 D HOH 379 4 HOH HOH 379 D HOH 380 4 HOH HOH 380 D HOH 381 4 HOH HOH 381 D G 1 n 1 G 1 A G 2 n 2 G 2 A C 3 n 3 C 3 A G 4 n 4 G 4 A A 5 n 5 A 5 A C 6 n 6 C 6 A 5BU 7 n 7 5BU 7 A G 8 n 8 G 8 A C 9 n 1 C 9 B A 10 n 2 A 10 B G 11 n 3 G 11 B U 12 n 4 U 12 B A 13 n 5 A 13 B C 14 n 6 C 14 B G 15 n 7 G 15 B 5IC 16 n 8 5IC 16 B C 17 n 9 C 17 B G 21 n 1 G 21 C G 22 n 2 G 22 C C 23 n 3 C 23 C G 24 n 4 G 24 C A 25 n 5 A 25 C C 26 n 6 C 26 C 5BU 27 n 7 5BU 27 C G 28 n 8 G 28 C C 29 n 1 C 29 D A 30 n 2 A 30 D G 31 n 3 G 31 D U 32 n 4 U 32 D A 33 n 5 A 33 D C 34 n 6 C 34 D G 35 n 7 G 35 D 5IC 36 n 8 5IC 36 D C 37 n 9 C 37 D author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric C HOH 301 H O HOH 1_555 C MG 300 E MG MG 1_555 C HOH 302 H O HOH 1_555 90.4 C HOH 301 H O HOH 1_555 C MG 300 E MG MG 1_555 C HOH 303 H O HOH 1_555 94.2 C HOH 302 H O HOH 1_555 C MG 300 E MG MG 1_555 C HOH 303 H O HOH 1_555 90.5 C HOH 301 H O HOH 1_555 C MG 300 E MG MG 1_555 C HOH 304 H O HOH 1_555 168.3 C HOH 302 H O HOH 1_555 C MG 300 E MG MG 1_555 C HOH 304 H O HOH 1_555 78.8 C HOH 303 H O HOH 1_555 C MG 300 E MG MG 1_555 C HOH 304 H O HOH 1_555 81.5 C HOH 301 H O HOH 1_555 C MG 300 E MG MG 1_555 C HOH 306 H O HOH 1_555 100.9 C HOH 302 H O HOH 1_555 C MG 300 E MG MG 1_555 C HOH 306 H O HOH 1_555 167.3 C HOH 303 H O HOH 1_555 C MG 300 E MG MG 1_555 C HOH 306 H O HOH 1_555 83.0 C HOH 304 H O HOH 1_555 C MG 300 E MG MG 1_555 C HOH 306 H O HOH 1_555 89.4 C HOH 301 H O HOH 1_555 C MG 300 E MG MG 1_555 D HOH 305 I O HOH 1_555 93.4 C HOH 302 H O HOH 1_555 C MG 300 E MG MG 1_555 D HOH 305 I O HOH 1_555 90.5 C HOH 303 H O HOH 1_555 C MG 300 E MG MG 1_555 D HOH 305 I O HOH 1_555 172.3 C HOH 304 H O HOH 1_555 C MG 300 E MG MG 1_555 D HOH 305 I O HOH 1_555 91.2 C HOH 306 H O HOH 1_555 C MG 300 E MG MG 1_555 D HOH 305 I O HOH 1_555 94.5 A 5BU 7 5-BROMO-URIDINE-5'-MONOPHOSPHATE A 5BU 7 U B 5IC 16 5-IODO-CYTIDINE-5'-MONOPHOSPHATE B 5IC 8 C C 5BU 27 5-BROMO-URIDINE-5'-MONOPHOSPHATE C 5BU 7 U D 5IC 36 5-IODO-CYTIDINE-5'-MONOPHOSPHATE D 5IC 8 C 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B O2' 5IC 16 B O2' 5IC 8 1 Y 1 D O2' 5IC 36 D O2' 5IC 8 1 Y 1 C G 24 0.057 SIDE CHAIN 1 D C 29 0.072 SIDE CHAIN 0.233 0.203 1.7 20 1847 20028 19558 9.4 Random 1 2 MAD 1.7 20 81 800 1 718 0 0.014 1.38 1.7 20 1JZV 19682 -3 0.063 1 98.0 data reduction DENZO data scaling SCALEPACK phasing SOLVE refinement CNS 1.0 Crystal structure of a bulged RNA from the SL2 stem-loop of the HIV-1 psi-RNA 1 N N 2 N N 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N covale 1.601 both A C 6 A O3' C 6 1_555 A 5BU 7 A P 5BU 7 1_555 covale 1.608 both A 5BU 7 A O3' 5BU 7 1_555 A G 8 A P G 8 1_555 covale 1.616 both B G 15 B O3' G 7 1_555 B 5IC 16 B P 5IC 8 1_555 covale 1.602 both B 5IC 16 B O3' 5IC 8 1_555 B C 17 B P C 9 1_555 covale 1.621 both C C 26 C O3' C 6 1_555 C 5BU 27 C P 5BU 7 1_555 covale 1.605 both C 5BU 27 C O3' 5BU 7 1_555 C G 28 C P G 8 1_555 covale 1.591 both D G 35 D O3' G 7 1_555 D 5IC 36 D P 5IC 8 1_555 covale 1.602 both D 5IC 36 D O3' 5IC 8 1_555 D C 37 D P C 9 1_555 metalc 2.202 C MG 300 E MG MG 1_555 C HOH 301 H O HOH 1_555 metalc 2.059 C MG 300 E MG MG 1_555 C HOH 302 H O HOH 1_555 metalc 2.026 C MG 300 E MG MG 1_555 C HOH 303 H O HOH 1_555 metalc 2.263 C MG 300 E MG MG 1_555 C HOH 304 H O HOH 1_555 metalc 2.283 C MG 300 E MG MG 1_555 C HOH 306 H O HOH 1_555 metalc 2.192 C MG 300 E MG MG 1_555 D HOH 305 I O HOH 1_555 hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 B C 17 B N3 C 9 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 B C 17 B O2 C 9 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 B C 17 B N4 C 9 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 B 5IC 16 B N3 5IC 8 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 B 5IC 16 B O2 5IC 8 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 B 5IC 16 B N4 5IC 8 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 B G 15 B N1 G 7 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 B G 15 B O6 G 7 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 B G 15 B N2 G 7 1_555 hydrog WATSON-CRICK A G 4 A N1 G 4 1_555 B C 14 B N3 C 6 1_555 hydrog WATSON-CRICK A G 4 A N2 G 4 1_555 B C 14 B O2 C 6 1_555 hydrog WATSON-CRICK A G 4 A O6 G 4 1_555 B C 14 B N4 C 6 1_555 hydrog WATSON-CRICK A A 5 A N1 A 5 1_555 B U 12 B N3 U 4 1_555 hydrog WATSON-CRICK A A 5 A N6 A 5 1_555 B U 12 B O4 U 4 1_555 hydrog WATSON-CRICK A C 6 A N3 C 6 1_555 B G 11 B N1 G 3 1_555 hydrog WATSON-CRICK A C 6 A N4 C 6 1_555 B G 11 B O6 G 3 1_555 hydrog WATSON-CRICK A C 6 A O2 C 6 1_555 B G 11 B N2 G 3 1_555 hydrog WATSON-CRICK A 5BU 7 A N3 5BU 7 1_555 B A 10 B N1 A 2 1_555 hydrog WATSON-CRICK A 5BU 7 A O4 5BU 7 1_555 B A 10 B N6 A 2 1_555 hydrog WATSON-CRICK A G 8 A N1 G 8 1_555 B C 9 B N3 C 1 1_555 hydrog WATSON-CRICK A G 8 A N2 G 8 1_555 B C 9 B O2 C 1 1_555 hydrog WATSON-CRICK A G 8 A O6 G 8 1_555 B C 9 B N4 C 1 1_555 hydrog G-A MISPAIR B G 11 B N2 G 3 1_555 D A 33 D N3 A 5 1_555 hydrog A-G MISPAIR B A 13 B N3 A 5 1_555 D G 31 D N2 G 3 1_555 hydrog WATSON-CRICK C G 21 C N1 G 1 1_555 D C 37 D N3 C 9 1_555 hydrog WATSON-CRICK C G 21 C N2 G 1 1_555 D C 37 D O2 C 9 1_555 hydrog WATSON-CRICK C G 21 C O6 G 1 1_555 D C 37 D N4 C 9 1_555 hydrog WATSON-CRICK C G 22 C N1 G 2 1_555 D 5IC 36 D N3 5IC 8 1_555 hydrog WATSON-CRICK C G 22 C N2 G 2 1_555 D 5IC 36 D O2 5IC 8 1_555 hydrog WATSON-CRICK C G 22 C O6 G 2 1_555 D 5IC 36 D N4 5IC 8 1_555 hydrog WATSON-CRICK C C 23 C N3 C 3 1_555 D G 35 D N1 G 7 1_555 hydrog WATSON-CRICK C C 23 C N4 C 3 1_555 D G 35 D O6 G 7 1_555 hydrog WATSON-CRICK C C 23 C O2 C 3 1_555 D G 35 D N2 G 7 1_555 hydrog WATSON-CRICK C G 24 C N1 G 4 1_555 D C 34 D N3 C 6 1_555 hydrog WATSON-CRICK C G 24 C N2 G 4 1_555 D C 34 D O2 C 6 1_555 hydrog WATSON-CRICK C G 24 C O6 G 4 1_555 D C 34 D N4 C 6 1_555 hydrog WATSON-CRICK C A 25 C N1 A 5 1_555 D U 32 D N3 U 4 1_555 hydrog WATSON-CRICK C A 25 C N6 A 5 1_555 D U 32 D O4 U 4 1_555 hydrog WATSON-CRICK C C 26 C N3 C 6 1_555 D G 31 D N1 G 3 1_555 hydrog WATSON-CRICK C C 26 C N4 C 6 1_555 D G 31 D O6 G 3 1_555 hydrog WATSON-CRICK C C 26 C O2 C 6 1_555 D G 31 D N2 G 3 1_555 hydrog WATSON-CRICK C 5BU 27 C N3 5BU 7 1_555 D A 30 D N1 A 2 1_555 hydrog WATSON-CRICK C 5BU 27 C O4 5BU 7 1_555 D A 30 D N6 A 2 1_555 hydrog WATSON-CRICK C G 28 C N1 G 8 1_555 D C 29 D N3 C 1 1_555 hydrog WATSON-CRICK C G 28 C N2 G 8 1_555 D C 29 D O2 C 1 1_555 hydrog WATSON-CRICK C G 28 C O6 G 8 1_555 D C 29 D N4 C 1 1_555 RNA A-bulge, A-RNA, HIV-1 SL2, RNA 1JZV PDB 1 1JZV 1JZV PDB 2 1JZV 1 8 1JZV 1 8 1JZV A 1 1 8 9 17 1JZV 9 17 1JZV B 2 1 9 21 28 1JZV 21 28 1JZV C 1 1 8 29 37 1JZV 29 37 1JZV D 2 1 9 BINDING SITE FOR RESIDUE MG C 300 C MG 300 Software 6 C HOH 301 H HOH 6 1_555 C HOH 302 H HOH 6 1_555 C HOH 303 H HOH 6 1_555 C HOH 304 H HOH 6 1_555 C HOH 306 H HOH 6 1_555 D HOH 305 I HOH 6 1_555 92 P 41 21 2