1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Maxwell, K.L. Yee, A.A. Arrowsmith, C.H. Gold, M. Davidson, A.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 318 1395 1404 10.1016/S0022-2836(02)00276-0 12083526 The solution structure of the bacteriophage lambda head-tail joining protein, gpFII. 2002 10.2210/pdb1k0h/pdb pdb_00001k0h 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 12775.037 gpFII 1 man polymer Tail attachment protein no no MADFDNLFDAAIARADETIRGYMGTSATITSGEQSGAVIRGVFDDPENISYAGQGVRVEGSSPSLFVRTDEVRQLRRGDT LTIGEENFWVDRVSPDDGGSCHLWLGRGVPPAVNRRR MADFDNLFDAAIARADETIRGYMGTSATITSGEQSGAVIRGVFDDPENISYAGQGVRVEGSSPSLFVRTDEVRQLRRGDT LTIGEENFWVDRVSPDDGGSCHLWLGRGVPPAVNRRR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lambda-like viruses Escherichia sample FII 10710 Enterobacteria phage lambda 562 Escherichia coli BL21(LAMBDADE3) PLASMID PET21D database_2 pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2002-07-17 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y PDBJ 2001-09-19 REL The structure was determined using triple-resonance NMR spectroscopy. structures with the lowest energy 50 10 3D_13C-separated_NOESY 3D_15N-separated_NOESY HNHA 200mM NaCl 6.5 ambient 298 K distance geometry simulated annealing 2 lowest energy 1.3mM gpFII U-15N, 13C; 10MM PHOSPHATE BUFFER NA, 200MM NACL 90% H2O/10% D2O Brunger refinement X-PLOR 3.851 Frank Delaglio processing NMRPipe 1.7 Tai-he Xia and Christian Bartels data analysis XEASY 1.3.1 500 Varian INOVA 600 Varian INOVA MET 1 n 1 MET 1 A ALA 2 n 2 ALA 2 A ASP 3 n 3 ASP 3 A PHE 4 n 4 PHE 4 A ASP 5 n 5 ASP 5 A ASN 6 n 6 ASN 6 A LEU 7 n 7 LEU 7 A PHE 8 n 8 PHE 8 A ASP 9 n 9 ASP 9 A ALA 10 n 10 ALA 10 A ALA 11 n 11 ALA 11 A ILE 12 n 12 ILE 12 A ALA 13 n 13 ALA 13 A ARG 14 n 14 ARG 14 A ALA 15 n 15 ALA 15 A ASP 16 n 16 ASP 16 A GLU 17 n 17 GLU 17 A THR 18 n 18 THR 18 A ILE 19 n 19 ILE 19 A ARG 20 n 20 ARG 20 A GLY 21 n 21 GLY 21 A TYR 22 n 22 TYR 22 A MET 23 n 23 MET 23 A GLY 24 n 24 GLY 24 A THR 25 n 25 THR 25 A SER 26 n 26 SER 26 A ALA 27 n 27 ALA 27 A THR 28 n 28 THR 28 A ILE 29 n 29 ILE 29 A THR 30 n 30 THR 30 A SER 31 n 31 SER 31 A GLY 32 n 32 GLY 32 A GLU 33 n 33 GLU 33 A GLN 34 n 34 GLN 34 A SER 35 n 35 SER 35 A GLY 36 n 36 GLY 36 A ALA 37 n 37 ALA 37 A VAL 38 n 38 VAL 38 A ILE 39 n 39 ILE 39 A ARG 40 n 40 ARG 40 A GLY 41 n 41 GLY 41 A VAL 42 n 42 VAL 42 A PHE 43 n 43 PHE 43 A ASP 44 n 44 ASP 44 A ASP 45 n 45 ASP 45 A PRO 46 n 46 PRO 46 A GLU 47 n 47 GLU 47 A ASN 48 n 48 ASN 48 A ILE 49 n 49 ILE 49 A SER 50 n 50 SER 50 A TYR 51 n 51 TYR 51 A ALA 52 n 52 ALA 52 A GLY 53 n 53 GLY 53 A GLN 54 n 54 GLN 54 A GLY 55 n 55 GLY 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A VAL 58 n 58 VAL 58 A GLU 59 n 59 GLU 59 A GLY 60 n 60 GLY 60 A SER 61 n 61 SER 61 A SER 62 n 62 SER 62 A PRO 63 n 63 PRO 63 A SER 64 n 64 SER 64 A LEU 65 n 65 LEU 65 A PHE 66 n 66 PHE 66 A VAL 67 n 67 VAL 67 A ARG 68 n 68 ARG 68 A THR 69 n 69 THR 69 A ASP 70 n 70 ASP 70 A GLU 71 n 71 GLU 71 A VAL 72 n 72 VAL 72 A ARG 73 n 73 ARG 73 A GLN 74 n 74 GLN 74 A LEU 75 n 75 LEU 75 A ARG 76 n 76 ARG 76 A ARG 77 n 77 ARG 77 A GLY 78 n 78 GLY 78 A ASP 79 n 79 ASP 79 A THR 80 n 80 THR 80 A LEU 81 n 81 LEU 81 A THR 82 n 82 THR 82 A ILE 83 n 83 ILE 83 A GLY 84 n 84 GLY 84 A GLU 85 n 85 GLU 85 A GLU 86 n 86 GLU 86 A ASN 87 n 87 ASN 87 A PHE 88 n 88 PHE 88 A TRP 89 n 89 TRP 89 A VAL 90 n 90 VAL 90 A ASP 91 n 91 ASP 91 A ARG 92 n 92 ARG 92 A VAL 93 n 93 VAL 93 A SER 94 n 94 SER 94 A PRO 95 n 95 PRO 95 A ASP 96 n 96 ASP 96 A ASP 97 n 97 ASP 97 A GLY 98 n 98 GLY 98 A GLY 99 n 99 GLY 99 A SER 100 n 100 SER 100 A CYS 101 n 101 CYS 101 A HIS 102 n 102 HIS 102 A LEU 103 n 103 LEU 103 A TRP 104 n 104 TRP 104 A LEU 105 n 105 LEU 105 A GLY 106 n 106 GLY 106 A ARG 107 n 107 ARG 107 A GLY 108 n 108 GLY 108 A VAL 109 n 109 VAL 109 A PRO 110 n 110 PRO 110 A PRO 111 n 111 PRO 111 A ALA 112 n 112 ALA 112 A VAL 113 n 113 VAL 113 A ASN 114 n 114 ASN 114 A ARG 115 n 115 ARG 115 A ARG 116 n 116 ARG 116 A ARG 117 n 117 ARG 117 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O SER 64 A O SER 64 A N ASP 44 A N ASP 44 A O ALA 37 A O ALA 37 A N ILE 29 A N ILE 29 A N THR 30 A N THR 30 A O THR 80 A O THR 80 A N LEU 81 A N LEU 81 A O PHE 88 A O PHE 88 1 A A O H ILE GLU 83 86 1.54 1 A A H O LEU LEU 65 103 1.57 1 A A H O ILE ALA 29 37 1.59 2 A A H O LEU LEU 65 103 1.55 2 A A H O ILE ALA 29 37 1.56 2 A A H O THR THR 28 82 1.58 3 A A O H ILE GLU 83 86 1.55 4 A A O H ILE GLU 83 86 1.56 4 A A H O ILE ALA 29 37 1.56 5 A A O H ILE GLU 83 86 1.53 5 A A H O ASP TRP 91 104 1.59 7 A A H O ASP SER 44 64 1.55 8 A A H O THR THR 28 82 1.56 9 A A H O ASP SER 44 64 1.55 9 A A O H ALA ILE 27 39 1.57 10 A A H O ILE ALA 29 37 1.56 1 A ASN 6 64.48 -76.29 1 A LEU 7 -163.76 -59.21 1 A ASP 9 -156.50 60.12 1 A ALA 10 -144.13 -54.80 1 A ALA 15 -144.17 -66.29 1 A ASP 16 68.02 67.88 1 A GLU 17 -173.87 146.45 1 A THR 18 67.42 76.13 1 A ASN 48 70.90 -73.29 1 A TYR 51 -100.85 -77.70 1 A VAL 56 -161.09 -46.31 1 A ARG 57 67.76 -64.25 1 A VAL 58 49.29 24.01 1 A GLU 59 -165.09 -49.57 1 A THR 69 -171.21 -101.43 1 A ASP 70 177.95 35.29 1 A LEU 75 -65.05 61.53 1 A ARG 77 -42.02 159.44 1 A GLU 86 98.65 31.16 1 A ARG 92 -44.29 174.15 1 A SER 94 -161.61 85.02 1 A ASP 96 -170.72 -52.16 1 A ASP 97 -108.18 77.11 1 A LEU 103 61.99 77.22 1 A VAL 109 -32.08 94.12 1 A ALA 112 -48.87 109.78 1 A VAL 113 -141.04 25.16 1 A ASN 114 48.63 76.27 2 A ALA 2 69.28 -68.63 2 A ASP 5 -107.18 60.75 2 A PHE 8 59.76 117.91 2 A ASP 9 -127.42 -51.51 2 A ALA 10 -178.94 -64.62 2 A ALA 15 55.02 -179.11 2 A THR 18 52.42 91.36 2 A TYR 22 -59.26 172.28 2 A MET 23 -62.87 -81.99 2 A GLU 33 -57.10 -75.63 2 A GLU 47 -107.66 48.11 2 A TYR 51 -68.45 63.11 2 A ALA 52 67.21 -67.12 2 A GLN 54 69.72 136.51 2 A VAL 58 -94.79 37.58 2 A GLU 59 74.96 71.63 2 A SER 61 -169.99 -44.57 2 A THR 69 167.49 122.86 2 A ASP 70 -66.36 62.28 2 A LEU 75 -67.11 63.24 2 A ILE 83 -122.70 -136.84 2 A GLU 86 57.71 19.78 2 A ARG 92 -20.04 115.54 2 A VAL 93 -49.69 158.17 2 A PRO 95 -60.96 -169.96 2 A ASP 96 71.24 -65.08 2 A SER 100 57.91 157.79 2 A CYS 101 62.46 61.69 2 A HIS 102 -139.28 -48.24 2 A LEU 103 50.68 100.85 2 A VAL 109 30.09 60.93 2 A ALA 112 -63.92 99.76 2 A ASN 114 -58.06 85.55 2 A ARG 116 54.84 104.98 3 A ASP 3 -152.88 40.95 3 A ASP 5 -162.69 70.00 3 A PHE 8 -101.01 79.81 3 A ALA 10 -167.24 84.34 3 A ILE 12 -161.08 -43.15 3 A ARG 14 -147.24 45.34 3 A GLU 17 60.33 -174.58 3 A MET 23 65.27 -165.32 3 A ILE 49 -149.51 -93.34 3 A SER 50 47.88 25.41 3 A ARG 57 62.78 110.65 3 A VAL 58 -94.79 31.82 3 A GLU 59 74.11 37.19 3 A THR 69 -99.53 -90.07 3 A ASP 70 -176.42 32.32 3 A LEU 75 -66.51 62.92 3 A ARG 77 -42.53 157.29 3 A GLU 86 101.34 23.80 3 A ARG 92 44.80 -177.67 3 A SER 94 61.90 151.77 3 A ASP 96 67.87 100.94 3 A ASP 97 -158.50 28.11 3 A SER 100 -56.19 95.80 3 A CYS 101 174.54 68.13 3 A HIS 102 -128.69 -56.03 3 A LEU 103 66.09 88.44 3 A VAL 109 -29.91 143.61 3 A PRO 110 -43.39 174.90 3 A PRO 111 -72.22 -167.96 3 A ALA 112 70.59 61.77 3 A VAL 113 -115.14 68.86 3 A ARG 116 -142.94 -77.67 4 A ALA 2 -140.26 -57.96 4 A ASP 3 -175.93 74.52 4 A ALA 10 179.94 -53.85 4 A ILE 12 -144.26 -154.31 4 A ARG 14 -98.43 39.70 4 A ALA 15 63.11 103.04 4 A ASP 16 60.63 -176.16 4 A THR 18 48.92 86.56 4 A ILE 19 -54.71 95.33 4 A MET 23 69.13 -79.78 4 A GLU 33 -64.91 -75.28 4 A GLN 34 -143.44 57.02 4 A VAL 42 -111.15 -120.59 4 A GLU 47 -91.01 40.84 4 A TYR 51 -134.71 -66.76 4 A ALA 52 -70.38 -161.00 4 A GLN 54 -155.07 54.73 4 A VAL 56 -139.24 -89.64 4 A VAL 58 47.67 23.70 4 A GLU 59 173.89 35.46 4 A THR 69 -164.32 -103.55 4 A ASP 70 179.00 36.80 4 A LEU 75 -66.04 67.56 4 A GLU 86 116.04 19.82 4 A ARG 92 -37.71 161.14 4 A SER 94 58.99 102.55 4 A ASP 96 -177.80 77.16 4 A ASP 97 -173.98 35.42 4 A SER 100 173.82 175.62 4 A LEU 103 -46.62 90.65 4 A VAL 109 -31.68 103.51 4 A ALA 112 51.24 97.46 5 A PHE 8 -49.58 161.48 5 A ALA 10 -165.58 -54.44 5 A ILE 12 -150.13 -44.51 5 A ARG 14 -103.77 58.97 5 A ALA 15 -166.80 69.77 5 A ASP 16 63.89 110.83 5 A THR 18 64.04 164.09 5 A ILE 19 58.72 74.08 5 A ARG 20 -172.17 -39.59 5 A GLU 33 -72.62 -75.90 5 A ASN 48 71.86 116.85 5 A ALA 52 -166.16 82.16 5 A GLN 54 -66.24 -77.26 5 A SER 61 66.12 -74.90 5 A SER 62 172.34 131.08 5 A ARG 68 -93.19 -62.29 5 A THR 69 -86.02 -110.33 5 A ASP 70 -164.82 24.95 5 A LEU 75 -63.25 75.08 5 A GLU 86 102.56 32.01 5 A ARG 92 -29.77 149.68 5 A SER 94 -172.83 141.50 5 A LEU 103 49.97 97.89 5 A PRO 111 -73.18 -154.09 5 A ALA 112 62.95 64.94 5 A ARG 115 50.85 -168.41 6 A PHE 4 52.07 -169.73 6 A ASP 5 -176.29 148.84 6 A ASP 9 60.27 86.43 6 A ALA 10 -164.51 73.76 6 A ILE 12 -134.24 -47.19 6 A ARG 14 -163.42 47.13 6 A ALA 15 -156.59 57.26 6 A THR 18 -38.31 -33.49 6 A ARG 20 66.20 76.17 6 A MET 23 66.62 -75.05 6 A GLN 34 -112.19 63.82 6 A TYR 51 70.11 -78.13 6 A VAL 58 -95.03 38.37 6 A SER 62 75.48 166.70 6 A THR 69 -139.53 -96.12 6 A ASP 70 -155.57 19.70 6 A LEU 75 -67.20 64.21 6 A ILE 83 -126.08 -127.59 6 A GLU 86 89.99 32.58 6 A ARG 92 -34.70 156.16 6 A PRO 95 -52.52 175.56 6 A ASP 97 64.91 87.98 6 A SER 100 -169.90 36.60 6 A PRO 110 -54.72 -172.00 6 A ALA 112 -66.36 77.94 6 A VAL 113 -93.68 48.99 6 A ARG 116 -152.76 -73.72 7 A ASP 3 69.84 89.85 7 A ASP 5 -146.95 43.04 7 A ASN 6 70.29 171.33 7 A LEU 7 64.98 127.11 7 A ASP 9 68.44 -67.00 7 A ALA 11 -141.54 13.98 7 A ALA 15 177.58 -71.34 7 A ASP 16 176.84 -60.28 7 A GLU 17 65.76 122.94 7 A THR 18 67.74 154.14 7 A ARG 20 -96.40 -62.66 7 A GLU 33 -86.38 -70.46 7 A GLU 47 -107.05 49.23 7 A SER 61 -158.07 33.63 7 A SER 62 173.79 154.32 7 A THR 69 -163.44 -112.04 7 A ASP 70 -161.59 26.25 7 A LEU 75 -67.18 62.85 7 A ILE 83 -129.71 -139.07 7 A GLU 86 34.54 33.49 7 A ARG 92 42.97 -176.99 7 A SER 100 65.64 130.65 7 A LEU 103 -46.77 93.82 7 A PRO 111 -73.87 -153.27 7 A ALA 112 49.35 98.08 7 A VAL 113 -171.42 129.81 8 A PHE 4 65.70 170.92 8 A ASP 5 -123.87 -69.08 8 A ASN 6 177.45 158.54 8 A LEU 7 -106.46 76.76 8 A ASP 9 71.30 51.88 8 A ALA 10 -146.81 -44.84 8 A ILE 12 -159.08 -42.37 8 A ASP 16 67.23 152.13 8 A GLU 17 -164.52 102.25 8 A THR 18 55.78 77.77 8 A ARG 20 68.32 117.22 8 A MET 23 -49.31 -77.01 8 A GLU 47 -75.75 -83.43 8 A ASN 48 64.37 112.46 8 A GLN 54 58.34 89.61 8 A VAL 56 -52.74 -173.71 8 A GLU 59 173.24 38.51 8 A THR 69 -163.97 -108.31 8 A ASP 70 179.75 36.60 8 A LEU 75 -67.07 65.13 8 A GLU 86 84.19 19.13 8 A ARG 92 -37.96 161.61 8 A SER 94 68.16 81.68 8 A PRO 95 -79.79 -167.45 8 A SER 100 173.72 -169.96 8 A LEU 103 52.13 106.39 8 A VAL 109 -25.04 -67.80 8 A PRO 111 -93.72 -158.77 8 A ALA 112 42.16 98.60 8 A ASN 114 -63.71 76.84 9 A ALA 2 71.55 -77.11 9 A PHE 4 68.29 -165.04 9 A ASN 6 67.45 175.12 9 A LEU 7 -67.94 -173.54 9 A ALA 10 77.58 -59.20 9 A ALA 13 74.72 92.23 9 A ALA 15 178.40 49.26 9 A THR 18 61.70 99.45 9 A ARG 20 -119.44 50.76 9 A TYR 22 67.00 135.27 9 A MET 23 -77.69 -82.38 9 A GLU 33 -86.64 -71.35 9 A VAL 42 -119.26 -162.50 9 A ASN 48 68.03 86.32 9 A SER 61 48.78 25.76 9 A SER 62 178.29 156.29 9 A THR 69 -139.63 -96.49 9 A ASP 70 -152.47 17.64 9 A LEU 75 -66.28 62.65 9 A ARG 77 -46.89 161.46 9 A ILE 83 -120.99 -130.23 9 A GLU 86 38.07 33.88 9 A ARG 92 -36.79 163.78 9 A VAL 93 -131.10 -51.01 9 A ASP 96 176.68 176.69 9 A SER 100 59.49 -163.88 9 A CYS 101 77.34 32.49 9 A LEU 103 60.12 114.94 9 A VAL 109 -35.62 100.80 9 A ARG 115 -67.83 96.89 10 A ASP 3 -101.84 -63.02 10 A ASP 5 -178.28 122.81 10 A ASN 6 -100.04 -63.14 10 A PHE 8 65.12 -73.36 10 A ASP 9 -158.50 -83.55 10 A ILE 12 -179.35 -41.99 10 A ALA 13 169.96 170.32 10 A ARG 14 176.90 37.84 10 A ILE 19 -173.32 69.17 10 A ARG 20 -125.64 -62.95 10 A GLU 33 -57.28 -75.24 10 A VAL 42 -112.41 -168.49 10 A GLU 47 -94.46 42.92 10 A ILE 49 47.63 -171.04 10 A ALA 52 53.69 -87.32 10 A GLN 54 71.02 -170.62 10 A ARG 57 62.76 -70.79 10 A VAL 58 48.37 26.38 10 A SER 61 -100.88 -68.09 10 A SER 62 176.84 138.96 10 A THR 69 -84.09 -96.06 10 A ASP 70 -174.99 31.98 10 A LEU 75 -66.85 65.23 10 A ILE 83 -117.55 -129.50 10 A ARG 92 -33.86 157.99 10 A SER 94 54.27 76.64 10 A ASP 97 67.46 105.66 10 A SER 100 50.77 -166.35 10 A LEU 103 53.16 101.40 10 A VAL 109 26.04 59.99 10 A ALA 112 -53.13 92.91 10 A VAL 113 -158.20 -38.26 10 A ASN 114 -66.28 67.61 Solution structure of bacteriophage lambda gpFII 1 N N VIRAL PROTEIN twisted beta-sandwich, Viral protein A PRO 110 A PRO 110 3 A PRO 111 A PRO 111 0.49 A PRO 110 A PRO 110 8 A PRO 111 A PRO 111 0.82 VCF2_LAMBD UNP 1 1 P03714 MADFDNLFDAAIARADETIRGYMGTSATITSGEQSGAVIRGVFDDPENISYAGQGVRVEGSSPSLFVRTDEVRQLRRGDT LTIGEENFWVDRVSPDDGGSCHLWLGRGVPPAVNRRR 1 117 1K0H 1 117 P03714 A 1 1 117 5 anti-parallel anti-parallel anti-parallel anti-parallel A SER 64 A SER 64 A VAL 67 A VAL 67 A ALA 37 A ALA 37 A ASP 44 A ASP 44 A SER 26 A SER 26 A THR 30 A THR 30 A THR 80 A THR 80 A ILE 83 A ILE 83 A PHE 88 A PHE 88 A TRP 89 A TRP 89