1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Evanics, F.
Maurmann, L.
Yang, W.W.
Bose, R.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
NE
Biochim.Biophys.Acta
BBACAQ
0113
0006-3002
1651
163
171
10.1016/S1570-9639(03)00266-8
14499601
Nuclear magnetic resonance structures of the zinc finger domain of human DNA polymerase-alpha.
2003
UK
J.CHEM.SOC.,CHEM.COMMUN.
1359-7345
10
1128
1129
10.1039/b301356a
Unwinding of DNA polymerases by the antitumor drug, cis-diamminedichloroplatinum(II)
2003
10.2210/pdb1k18/pdb
pdb_00001k18
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
3536.204
DNA POLYMERASE ALPHA CATALYTIC SUBUNIT
2.7.7.7
zinc finger domain (residues 1347-1377)
1
syn
polymer
no
no
ICEEPTCRNRTRHLPLQFSRTGPLCPACMKA
ICEEPTCRNRTRHLPLQFSRTGPLCPACMKA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-06-24
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
NMR structures of the zinc finger domain of human DNA polymerase-alpha
RCSB
Y
RCSB
2001-09-24
REL
REL
The sequence occurs naturally in humans.
sample
This structure was determined using standard 2D homonuclear experiments. The NOESY mixing time was 200 ms.
1
2D NOESY
DQF-COSY
TOCSY
6.8
ambient
296
K
190 NOE derived distance restraints and 4 dihedral angle restraints were used for the calculations.
simulated annealing followed by restrained molecular mechanics
minimized average structure
3mM Zinc Finger Peptide; 3.6 mM Zn(II)nitrate
90% H2O/10% D2O
BRUKER
processing
XwinNMR
3.0
Borgias; Thomas; Liu; Kumar; Tonelli
iterative matrix relaxation
CORMA
5.2
Borgias; Thomas; Liu; Kumar; Tonelli
iterative matrix relaxation
MARDIGRAS
3.2
MSI
structure solution
DGII
97.0
MSI
refinement
Discover
97.0
800
Bruker
AVANCE
500
Varian
UNITY
ILE
1
n
1
ILE
1
A
CYS
2
n
2
CYS
2
A
GLU
3
n
3
GLU
3
A
GLU
4
n
4
GLU
4
A
PRO
5
n
5
PRO
5
A
THR
6
n
6
THR
6
A
CYS
7
n
7
CYS
7
A
ARG
8
n
8
ARG
8
A
ASN
9
n
9
ASN
9
A
ARG
10
n
10
ARG
10
A
THR
11
n
11
THR
11
A
ARG
12
n
12
ARG
12
A
HIS
13
n
13
HIS
13
A
LEU
14
n
14
LEU
14
A
PRO
15
n
15
PRO
15
A
LEU
16
n
16
LEU
16
A
GLN
17
n
17
GLN
17
A
PHE
18
n
18
PHE
18
A
SER
19
n
19
SER
19
A
ARG
20
n
20
ARG
20
A
THR
21
n
21
THR
21
A
GLY
22
n
22
GLY
22
A
PRO
23
n
23
PRO
23
A
LEU
24
n
24
LEU
24
A
CYS
25
n
25
CYS
25
A
PRO
26
n
26
PRO
26
A
ALA
27
n
27
ALA
27
A
CYS
28
n
28
CYS
28
A
MET
29
n
29
MET
29
A
LYS
30
n
30
LYS
30
A
ALA
31
n
31
ALA
31
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
GLU
PRO
4
5
138.79
1
A
A
THR
ARG
11
12
149.47
1
A
A
LEU
PRO
14
15
142.24
1
A
A
PRO
LEU
15
16
129.27
1
A
A
GLN
PHE
17
18
118.37
1
A
A
SER
ARG
19
20
134.59
1
A
A
LEU
CYS
24
25
-56.98
1
A
A
PRO
ALA
26
27
62.89
1
A
PHE
18
0.100
SIDE CHAIN
1
16.83
2.70
111.00
127.83
A
A
A
N
CA
C
GLU
GLU
GLU
4
4
4
N
1
4.18
0.50
120.30
124.48
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
8
8
8
N
1
4.13
0.50
120.30
124.43
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
10
10
10
N
1
4.46
0.50
120.30
124.76
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
12
12
12
N
1
-3.05
0.50
120.30
117.25
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
12
12
12
N
1
8.43
1.30
111.50
119.93
A
A
A
ND1
CE1
NE2
HIS
HIS
HIS
13
13
13
N
1
4.22
0.50
120.30
124.52
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
20
20
20
N
1
-3.04
0.50
120.30
117.26
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
20
20
20
N
1
A
A
CD
OE2
GLU
GLU
3
3
0.108
0.011
1.252
1.360
N
1
A
A
CD
OE2
GLU
GLU
4
4
0.108
0.011
1.252
1.360
N
1
A
GLU
4
-66.40
3.53
1
A
PRO
15
-66.39
20.86
1
A
PRO
23
-113.27
69.97
minimized average
Minimized Average NMR Structure of the Zinc Finger Domain of Human DNA Polymerase-alpha
1
N
N
A
GLU
4
A
GLU
4
HELX_P
A
HIS
13
A
HIS
13
1
1
10
TRANSFERASE
zinc finger protein, DNA binding domain, polymerase-alpha, TRANSFERASE
A
GLY
22
A
GLY
22
1
A
PRO
23
A
PRO
23
0.53
A
CYS
25
A
CYS
25
1
A
PRO
26
A
PRO
26
16.95
DPOA_HUMAN
UNP
1
1347
P09884
ICEEPTCRNRTRHLPLQFSRTGPLCPACMKA
1347
1377
1K18
1
31
P09884
A
1
1
31