.008846
.005107
.000000
.000000
.010215
.000000
.000000
.000000
.015980
.00000
.00000
.00000
Silvian, L.F.
Toth, E.A.
Pham, P.
Goodman, M.F.
Ellenberger, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
113.040
113.040
62.580
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
8
984
989
10.1038/nsb1101-984
11685247
Crystal structure of a DinB family error-prone DNA polymerase from Sulfolobus solfataricus.
2001
10.2210/pdb1k1s/pdb
pdb_00001k1s
1.000000
.000000
.000000
.000000
1.000000
.000000
.000000
.000000
1.000000
.00000
.00000
.00000
100
1
Wiggler
CCD
2001-07-26
BRANDEIS - B4
Si 111 channel
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
X25
NSLS
1.1
SYNCHROTRON
NSLS BEAMLINE X25
40029.773
DBH protein
C31S
1
man
polymer
18.015
water
31
nat
water
no
no
MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVSVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI
YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK
PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN
KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR
ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI
MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVSVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI
YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK
PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN
KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR
ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Sulfolobus
Escherichia
sample
DINB
2287
Sulfolobus solfataricus
562
Escherichia coli
BL21 (RIL)
plasmid
pet17
1
2.88
57.32
VAPOR DIFFUSION, HANGING DROP
6.2
Peg2000, sodium cacodylate, sodium fluoride, magnesium chloride, sucrose monolaurate, dATP, DNA hairpin (5' TTTTTTTTTTAGATGTCGATGCAATCGACATCT* 3' terminated by 3'deoxythymine ), pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
database_2
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Database references
Data collection
Refinement description
1
0
2001-10-31
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-10-27
1
4
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Crystal Structure of a DinB Family Error Prone DNA Polymerase from Sulfolobus solfataricus
RCSB
Y
RCSB
2001-09-25
REL
REL
HOH
water
1IM4
PDB entry 1IM4
PDB
experimental model
HOH
501
2
HOH
HOH
501
A
HOH
502
2
HOH
HOH
502
A
HOH
503
2
HOH
HOH
503
A
HOH
504
2
HOH
HOH
504
A
HOH
505
2
HOH
HOH
505
A
HOH
506
2
HOH
HOH
506
A
HOH
507
2
HOH
HOH
507
A
HOH
508
2
HOH
HOH
508
A
HOH
509
2
HOH
HOH
509
A
HOH
510
2
HOH
HOH
510
A
HOH
511
2
HOH
HOH
511
A
HOH
512
2
HOH
HOH
512
A
HOH
513
2
HOH
HOH
513
A
HOH
514
2
HOH
HOH
514
A
HOH
515
2
HOH
HOH
515
A
HOH
516
2
HOH
HOH
516
A
HOH
517
2
HOH
HOH
517
A
HOH
518
2
HOH
HOH
518
A
HOH
519
2
HOH
HOH
519
A
HOH
520
2
HOH
HOH
520
A
HOH
521
2
HOH
HOH
521
A
HOH
522
2
HOH
HOH
522
A
HOH
523
2
HOH
HOH
523
A
HOH
524
2
HOH
HOH
524
A
HOH
525
2
HOH
HOH
525
A
HOH
526
2
HOH
HOH
526
A
HOH
527
2
HOH
HOH
527
A
HOH
528
2
HOH
HOH
528
A
HOH
529
2
HOH
HOH
529
A
HOH
530
2
HOH
HOH
530
A
HOH
531
2
HOH
HOH
531
A
MET
1
n
1
MET
1
A
ILE
2
n
2
ILE
2
A
VAL
3
n
3
VAL
3
A
ILE
4
n
4
ILE
4
A
PHE
5
n
5
PHE
5
A
VAL
6
n
6
VAL
6
A
ASP
7
n
7
ASP
7
A
PHE
8
n
8
PHE
8
A
ASP
9
n
9
ASP
9
A
TYR
10
n
10
TYR
10
A
PHE
11
n
11
PHE
11
A
PHE
12
n
12
PHE
12
A
ALA
13
n
13
ALA
13
A
GLN
14
n
14
GLN
14
A
VAL
15
n
15
VAL
15
A
GLU
16
n
16
GLU
16
A
GLU
17
n
17
GLU
17
A
VAL
18
n
18
VAL
18
A
LEU
19
n
19
LEU
19
A
ASN
20
n
20
ASN
20
A
PRO
21
n
21
PRO
21
A
GLN
22
n
22
GLN
22
A
TYR
23
n
23
TYR
23
A
LYS
24
n
24
LYS
24
A
GLY
25
n
25
GLY
25
A
LYS
26
n
26
LYS
26
A
PRO
27
n
27
PRO
27
A
LEU
28
n
28
LEU
28
A
VAL
29
n
29
VAL
29
A
VAL
30
n
30
VAL
30
A
SER
31
n
31
SER
31
A
VAL
32
n
32
VAL
32
A
TYR
33
n
33
TYR
33
A
SER
34
n
34
SER
34
A
GLY
35
n
35
GLY
35
A
n
36
36
A
n
37
37
A
n
38
38
A
THR
39
n
39
THR
39
A
SER
40
n
40
SER
40
A
GLY
41
n
41
GLY
41
A
ALA
42
n
42
ALA
42
A
VAL
43
n
43
VAL
43
A
ALA
44
n
44
ALA
44
A
THR
45
n
45
THR
45
A
ALA
46
n
46
ALA
46
A
ASN
47
n
47
ASN
47
A
TYR
48
n
48
TYR
48
A
GLU
49
n
49
GLU
49
A
ALA
50
n
50
ALA
50
A
ARG
51
n
51
ARG
51
A
LYS
52
n
52
LYS
52
A
LEU
53
n
53
LEU
53
A
GLY
54
n
54
GLY
54
A
VAL
55
n
55
VAL
55
A
LYS
56
n
56
LYS
56
A
ALA
57
n
57
ALA
57
A
GLY
58
n
58
GLY
58
A
MET
59
n
59
MET
59
A
PRO
60
n
60
PRO
60
A
ILE
61
n
61
ILE
61
A
ILE
62
n
62
ILE
62
A
LYS
63
n
63
LYS
63
A
ALA
64
n
64
ALA
64
A
MET
65
n
65
MET
65
A
GLN
66
n
66
GLN
66
A
ILE
67
n
67
ILE
67
A
ALA
68
n
68
ALA
68
A
PRO
69
n
69
PRO
69
A
SER
70
n
70
SER
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
TYR
73
n
73
TYR
73
A
VAL
74
n
74
VAL
74
A
PRO
75
n
75
PRO
75
A
MET
76
n
76
MET
76
A
ARG
77
n
77
ARG
77
A
LYS
78
n
78
LYS
78
A
PRO
79
n
79
PRO
79
A
ILE
80
n
80
ILE
80
A
TYR
81
n
81
TYR
81
A
GLU
82
n
82
GLU
82
A
ALA
83
n
83
ALA
83
A
PHE
84
n
84
PHE
84
A
SER
85
n
85
SER
85
A
ASN
86
n
86
ASN
86
A
ARG
87
n
87
ARG
87
A
ILE
88
n
88
ILE
88
A
MET
89
n
89
MET
89
A
ASN
90
n
90
ASN
90
A
LEU
91
n
91
LEU
91
A
LEU
92
n
92
LEU
92
A
ASN
93
n
93
ASN
93
A
LYS
94
n
94
LYS
94
A
HIS
95
n
95
HIS
95
A
ALA
96
n
96
ALA
96
A
ASP
97
n
97
ASP
97
A
LYS
98
n
98
LYS
98
A
ILE
99
n
99
ILE
99
A
GLU
100
n
100
GLU
100
A
VAL
101
n
101
VAL
101
A
ALA
102
n
102
ALA
102
A
SER
103
n
103
SER
103
A
ILE
104
n
104
ILE
104
A
ASP
105
n
105
ASP
105
A
GLU
106
n
106
GLU
106
A
ALA
107
n
107
ALA
107
A
TYR
108
n
108
TYR
108
A
LEU
109
n
109
LEU
109
A
ASP
110
n
110
ASP
110
A
VAL
111
n
111
VAL
111
A
THR
112
n
112
THR
112
A
ASN
113
n
113
ASN
113
A
LYS
114
n
114
LYS
114
A
VAL
115
n
115
VAL
115
A
GLU
116
n
116
GLU
116
A
GLY
117
n
117
GLY
117
A
ASN
118
n
118
ASN
118
A
PHE
119
n
119
PHE
119
A
GLU
120
n
120
GLU
120
A
ASN
121
n
121
ASN
121
A
GLY
122
n
122
GLY
122
A
ILE
123
n
123
ILE
123
A
GLU
124
n
124
GLU
124
A
LEU
125
n
125
LEU
125
A
ALA
126
n
126
ALA
126
A
ARG
127
n
127
ARG
127
A
LYS
128
n
128
LYS
128
A
ILE
129
n
129
ILE
129
A
LYS
130
n
130
LYS
130
A
GLN
131
n
131
GLN
131
A
GLU
132
n
132
GLU
132
A
ILE
133
n
133
ILE
133
A
LEU
134
n
134
LEU
134
A
GLU
135
n
135
GLU
135
A
LYS
136
n
136
LYS
136
A
GLU
137
n
137
GLU
137
A
LYS
138
n
138
LYS
138
A
ILE
139
n
139
ILE
139
A
THR
140
n
140
THR
140
A
VAL
141
n
141
VAL
141
A
THR
142
n
142
THR
142
A
VAL
143
n
143
VAL
143
A
GLY
144
n
144
GLY
144
A
VAL
145
n
145
VAL
145
A
ALA
146
n
146
ALA
146
A
PRO
147
n
147
PRO
147
A
ASN
148
n
148
ASN
148
A
LYS
149
n
149
LYS
149
A
ILE
150
n
150
ILE
150
A
LEU
151
n
151
LEU
151
A
ALA
152
n
152
ALA
152
A
LYS
153
n
153
LYS
153
A
ILE
154
n
154
ILE
154
A
ILE
155
n
155
ILE
155
A
ALA
156
n
156
ALA
156
A
ASP
157
n
157
ASP
157
A
LYS
158
n
158
LYS
158
A
SER
159
n
159
SER
159
A
LYS
160
n
160
LYS
160
A
PRO
161
n
161
PRO
161
A
ASN
162
n
162
ASN
162
A
GLY
163
n
163
GLY
163
A
LEU
164
n
164
LEU
164
A
GLY
165
n
165
GLY
165
A
VAL
166
n
166
VAL
166
A
ILE
167
n
167
ILE
167
A
ARG
168
n
168
ARG
168
A
PRO
169
n
169
PRO
169
A
THR
170
n
170
THR
170
A
GLU
171
n
171
GLU
171
A
VAL
172
n
172
VAL
172
A
GLN
173
n
173
GLN
173
A
ASP
174
n
174
ASP
174
A
PHE
175
n
175
PHE
175
A
LEU
176
n
176
LEU
176
A
ASN
177
n
177
ASN
177
A
GLU
178
n
178
GLU
178
A
LEU
179
n
179
LEU
179
A
ASP
180
n
180
ASP
180
A
ILE
181
n
181
ILE
181
A
ASP
182
n
182
ASP
182
A
GLU
183
n
183
GLU
183
A
ILE
184
n
184
ILE
184
A
PRO
185
n
185
PRO
185
A
GLY
186
n
186
GLY
186
A
ILE
187
n
187
ILE
187
A
GLY
188
n
188
GLY
188
A
SER
189
n
189
SER
189
A
VAL
190
n
190
VAL
190
A
LEU
191
n
191
LEU
191
A
ALA
192
n
192
ALA
192
A
ARG
193
n
193
ARG
193
A
ARG
194
n
194
ARG
194
A
LEU
195
n
195
LEU
195
A
ASN
196
n
196
ASN
196
A
GLU
197
n
197
GLU
197
A
LEU
198
n
198
LEU
198
A
GLY
199
n
199
GLY
199
A
ILE
200
n
200
ILE
200
A
GLN
201
n
201
GLN
201
A
LYS
202
n
202
LYS
202
A
LEU
203
n
203
LEU
203
A
ARG
204
n
204
ARG
204
A
ASP
205
n
205
ASP
205
A
ILE
206
n
206
ILE
206
A
LEU
207
n
207
LEU
207
A
SER
208
n
208
SER
208
A
LYS
209
n
209
LYS
209
A
ASN
210
n
210
ASN
210
A
TYR
211
n
211
TYR
211
A
ASN
212
n
212
ASN
212
A
GLU
213
n
213
GLU
213
A
LEU
214
n
214
LEU
214
A
GLU
215
n
215
GLU
215
A
LYS
216
n
216
LYS
216
A
ILE
217
n
217
ILE
217
A
THR
218
n
218
THR
218
A
GLY
219
n
219
GLY
219
A
LYS
220
n
220
LYS
220
A
ALA
221
n
221
ALA
221
A
LYS
222
n
222
LYS
222
A
ALA
223
n
223
ALA
223
A
LEU
224
n
224
LEU
224
A
TYR
225
n
225
TYR
225
A
LEU
226
n
226
LEU
226
A
LEU
227
n
227
LEU
227
A
LYS
228
n
228
LYS
228
A
LEU
229
n
229
LEU
229
A
ALA
230
n
230
ALA
230
A
GLN
231
n
231
GLN
231
A
ASN
232
n
232
ASN
232
A
LYS
233
n
233
LYS
233
A
TYR
234
n
234
TYR
234
A
SER
235
n
235
SER
235
A
GLU
236
n
236
GLU
236
A
PRO
237
n
237
PRO
237
A
VAL
238
n
238
VAL
238
A
GLU
239
n
239
GLU
239
A
ASN
240
n
240
ASN
240
A
LYS
241
n
241
LYS
241
A
SER
242
n
242
SER
242
A
LYS
243
n
243
LYS
243
A
ILE
244
n
244
ILE
244
A
PRO
245
n
245
PRO
245
A
HIS
246
n
246
HIS
246
A
GLY
247
n
247
GLY
247
A
ARG
248
n
248
ARG
248
A
TYR
249
n
249
TYR
249
A
LEU
250
n
250
LEU
250
A
THR
251
n
251
THR
251
A
LEU
252
n
252
LEU
252
A
PRO
253
n
253
PRO
253
A
TYR
254
n
254
TYR
254
A
ASN
255
n
255
ASN
255
A
THR
256
n
256
THR
256
A
ARG
257
n
257
ARG
257
A
ASP
258
n
258
ASP
258
A
VAL
259
n
259
VAL
259
A
LYS
260
n
260
LYS
260
A
VAL
261
n
261
VAL
261
A
ILE
262
n
262
ILE
262
A
LEU
263
n
263
LEU
263
A
PRO
264
n
264
PRO
264
A
TYR
265
n
265
TYR
265
A
LEU
266
n
266
LEU
266
A
LYS
267
n
267
LYS
267
A
LYS
268
n
268
LYS
268
A
ALA
269
n
269
ALA
269
A
ILE
270
n
270
ILE
270
A
ASN
271
n
271
ASN
271
A
GLU
272
n
272
GLU
272
A
ALA
273
n
273
ALA
273
A
TYR
274
n
274
TYR
274
A
ASN
275
n
275
ASN
275
A
LYS
276
n
276
LYS
276
A
VAL
277
n
277
VAL
277
A
ASN
278
n
278
ASN
278
A
GLY
279
n
279
GLY
279
A
ILE
280
n
280
ILE
280
A
PRO
281
n
281
PRO
281
A
MET
282
n
282
MET
282
A
ARG
283
n
283
ARG
283
A
ILE
284
n
284
ILE
284
A
THR
285
n
285
THR
285
A
VAL
286
n
286
VAL
286
A
ILE
287
n
287
ILE
287
A
ALA
288
n
288
ALA
288
A
ILE
289
n
289
ILE
289
A
MET
290
n
290
MET
290
A
GLU
291
n
291
GLU
291
A
ASP
292
n
292
ASP
292
A
LEU
293
n
293
LEU
293
A
ASP
294
n
294
ASP
294
A
ILE
295
n
295
ILE
295
A
LEU
296
n
296
LEU
296
A
SER
297
n
297
SER
297
A
LYS
298
n
298
LYS
298
A
GLY
299
n
299
GLY
299
A
LYS
300
n
300
LYS
300
A
LYS
301
n
301
LYS
301
A
PHE
302
n
302
PHE
302
A
LYS
303
n
303
LYS
303
A
HIS
304
n
304
HIS
304
A
GLY
305
n
305
GLY
305
A
ILE
306
n
306
ILE
306
A
SER
307
n
307
SER
307
A
ILE
308
n
308
ILE
308
A
ASP
309
n
309
ASP
309
A
ASN
310
n
310
ASN
310
A
ALA
311
n
311
ALA
311
A
TYR
312
n
312
TYR
312
A
LYS
313
n
313
LYS
313
A
VAL
314
n
314
VAL
314
A
ALA
315
n
315
ALA
315
A
GLU
316
n
316
GLU
316
A
ASP
317
n
317
ASP
317
A
LEU
318
n
318
LEU
318
A
LEU
319
n
319
LEU
319
A
ARG
320
n
320
ARG
320
A
GLU
321
n
321
GLU
321
A
LEU
322
n
322
LEU
322
A
LEU
323
n
323
LEU
323
A
VAL
324
n
324
VAL
324
A
ARG
325
n
325
ARG
325
A
ASP
326
n
326
ASP
326
A
LYS
327
n
327
LYS
327
A
ARG
328
n
328
ARG
328
A
ARG
329
n
329
ARG
329
A
ASN
330
n
330
ASN
330
A
VAL
331
n
331
VAL
331
A
ARG
332
n
332
ARG
332
A
ARG
333
n
333
ARG
333
A
ILE
334
n
334
ILE
334
A
GLY
335
n
335
GLY
335
A
VAL
336
n
336
VAL
336
A
LYS
337
n
337
LYS
337
A
LEU
338
n
338
LEU
338
A
ASP
339
n
339
ASP
339
A
ASN
340
n
340
ASN
340
A
ILE
341
n
341
ILE
341
A
ILE
342
n
342
ILE
342
A
ILE
343
n
343
ILE
343
A
ASN
344
n
344
ASN
344
A
n
345
345
A
n
346
346
A
n
347
347
A
n
348
348
A
n
349
349
A
n
350
350
A
n
351
351
A
n
352
352
A
n
353
353
A
n
354
354
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
100
A
N
GLU
100
A
O
TYR
108
A
O
TYR
108
A
O
LEU
109
A
O
LEU
109
A
N
ILE
4
A
N
ILE
4
A
N
PHE
5
A
N
PHE
5
A
O
GLY
144
A
O
GLY
144
A
N
VAL
145
A
N
VAL
145
A
O
GLY
165
A
O
GLY
165
A
O
ALA
44
A
O
ALA
44
A
N
VAL
30
A
N
VAL
30
A
N
VAL
29
A
N
VAL
29
A
O
ILE
72
A
O
ILE
72
A
N
SER
242
A
N
SER
242
A
O
ILE
341
A
O
ILE
341
A
N
THR
256
A
N
THR
256
A
O
VAL
331
A
O
VAL
331
A
O
GLY
335
A
O
GLY
335
A
N
ILE
287
A
N
ILE
287
A
N
VAL
286
A
N
VAL
286
A
O
LYS
301
A
O
LYS
301
1
A
CG
LYS
26
A
CG
LYS
26
1
Y
1
A
CD
LYS
26
A
CD
LYS
26
1
Y
1
A
CE
LYS
26
A
CE
LYS
26
1
Y
1
A
NZ
LYS
26
A
NZ
LYS
26
1
Y
1
A
O
GLY
35
A
O
GLY
35
1
Y
1
A
CG
LYS
56
A
CG
LYS
56
1
Y
1
A
CD
LYS
56
A
CD
LYS
56
1
Y
1
A
CE
LYS
56
A
CE
LYS
56
1
Y
1
A
NZ
LYS
56
A
NZ
LYS
56
1
Y
1
A
CG
LYS
63
A
CG
LYS
63
1
Y
1
A
CD
LYS
63
A
CD
LYS
63
1
Y
1
A
CE
LYS
63
A
CE
LYS
63
1
Y
1
A
NZ
LYS
63
A
NZ
LYS
63
1
Y
1
A
CG
GLN
66
A
CG
GLN
66
1
Y
1
A
CD
GLN
66
A
CD
GLN
66
1
Y
1
A
OE1
GLN
66
A
OE1
GLN
66
1
Y
1
A
NE2
GLN
66
A
NE2
GLN
66
1
Y
1
A
CG
GLU
116
A
CG
GLU
116
1
Y
1
A
CD
GLU
116
A
CD
GLU
116
1
Y
1
A
OE1
GLU
116
A
OE1
GLU
116
1
Y
1
A
OE2
GLU
116
A
OE2
GLU
116
1
Y
1
A
CG
ASP
182
A
CG
ASP
182
1
Y
1
A
OD1
ASP
182
A
OD1
ASP
182
1
Y
1
A
OD2
ASP
182
A
OD2
ASP
182
1
Y
1
A
OG
SER
235
A
OG
SER
235
1
Y
1
A
OG
SER
297
A
OG
SER
297
1
Y
1
A
CG
LYS
303
A
CG
LYS
303
1
Y
1
A
CD
LYS
303
A
CD
LYS
303
1
Y
1
A
CE
LYS
303
A
CE
LYS
303
1
Y
1
A
NZ
LYS
303
A
NZ
LYS
303
1
Y
1
A
CG
ASP
339
A
CG
ASP
339
1
Y
1
A
OD1
ASP
339
A
OD1
ASP
339
1
Y
1
A
OD2
ASP
339
A
OD2
ASP
339
1
Y
1
A
ARG
36
A
ARG
36
1
Y
1
A
THR
37
A
THR
37
1
Y
1
A
LYS
38
A
LYS
38
1
Y
1
A
LYS
345
A
LYS
345
1
Y
1
A
THR
346
A
THR
346
1
Y
1
A
ASN
347
A
ASN
347
1
Y
1
A
LEU
348
A
LEU
348
1
Y
1
A
SER
349
A
SER
349
1
Y
1
A
ASP
350
A
ASP
350
1
Y
1
A
PHE
351
A
PHE
351
1
Y
1
A
PHE
352
A
PHE
352
1
Y
1
A
ASP
353
A
ASP
353
1
Y
1
A
ILE
354
A
ILE
354
1
Y
1
A
TYR
10
31.05
45.66
1
A
PHE
11
-25.86
-72.40
1
A
PRO
27
-63.28
84.79
1
A
SER
34
-172.00
-161.88
1
A
SER
40
170.81
115.31
1
A
GLU
49
-59.40
-6.90
1
A
LEU
53
-67.52
7.00
1
A
ARG
77
-119.64
76.26
1
A
ASP
105
-146.73
20.71
1
A
GLU
116
48.15
26.47
1
A
LYS
158
-66.06
1.51
1
A
ASN
162
58.34
7.08
1
A
LEU
164
-151.08
76.19
1
A
VAL
172
-65.76
-77.27
1
A
GLU
178
-73.77
23.85
1
A
LEU
207
-83.14
35.24
1
A
SER
208
-158.93
49.38
1
A
LYS
209
-171.49
135.96
1
A
LYS
216
-69.71
14.44
1
A
ILE
217
-132.39
-46.67
1
A
ALA
221
-53.83
-70.02
1
A
TYR
234
-105.00
50.26
1
A
SER
235
-100.63
79.19
1
A
TYR
254
178.91
139.47
1
A
ASN
278
-98.35
40.68
1
A
GLU
291
-12.71
-44.88
1
A
ARG
328
33.20
71.07
1
A
ARG
329
-178.18
90.31
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
72.9
9.28
19.43
.00
10.26
.00
-19.54
0.2790000
.008
0.2370000
2.80
37.00
1159
11002
11002
10.5
96.6
RANDOM
617472.89
.000000
1
RESTRAINED
THROUGHOUT
0
MOLECULAR REPLACEMENT
PDB entry 1IM4
Engh & Huber
FLAT MODEL
55.8395
.380645
.52
.39
5.00
.62
.48
2.80
37.00
31
2702
0
0
2671
.004
.9
21.1
.70
1.24
1.50
2.14
2.00
2.70
2.00
3.46
2.50
0.4260000
.032
0.3380000
2.98
175
1537
6
10.2
90.6
2.8
37.0
1K1S
11002
11002
0
0
0.0800000
1
20.1
7.1
99.9
0.5010000
2.8
2.9
4.7
1126
7.1
100.0
phasing
AMoRE
refinement
CNS
1.0
data reduction
DENZO
data scaling
SCALEPACK
Crystal Structure of DinB from Sulfolobus solfataricus
1
N
N
2
N
N
A
TYR
10
A
TYR
10
HELX_P
A
LEU
19
A
LEU
19
1
1
10
A
ASN
20
A
ASN
20
HELX_P
A
LYS
24
A
LYS
24
5
2
5
A
ASN
47
A
ASN
47
HELX_P
A
LYS
52
A
LYS
52
1
3
6
A
PRO
60
A
PRO
60
HELX_P
A
GLN
66
A
GLN
66
1
4
7
A
ARG
77
A
ARG
77
HELX_P
A
LYS
94
A
LYS
94
1
5
18
A
ASN
121
A
ASN
121
HELX_P
A
LYS
138
A
LYS
138
1
6
18
A
ASN
148
A
ASN
148
HELX_P
A
LYS
158
A
LYS
158
1
7
11
A
GLU
171
A
GLU
171
HELX_P
A
GLU
178
A
GLU
178
1
8
8
A
ASP
180
A
ASP
180
HELX_P
A
ILE
187
A
ILE
187
5
9
8
A
GLY
188
A
GLY
188
HELX_P
A
LEU
198
A
LEU
198
1
10
11
A
LYS
202
A
LYS
202
HELX_P
A
LYS
209
A
LYS
209
5
11
8
A
ASN
210
A
ASN
210
HELX_P
A
GLY
219
A
GLY
219
1
12
10
A
GLY
219
A
GLY
219
HELX_P
A
ALA
230
A
ALA
230
1
13
12
A
ASP
258
A
ASP
258
HELX_P
A
LYS
276
A
LYS
276
1
14
19
A
SER
307
A
SER
307
HELX_P
A
VAL
324
A
VAL
324
1
15
18
TRANSCRIPTION
mixed a/b structure, 4-stranded antiparallel b-sheet, TRANSCRIPTION
A
LYS
160
A
LYS
160
1
A
PRO
161
A
PRO
161
0.25
DPO41_SULSO
UNP
1
1
P96022
MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI
YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK
PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN
KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR
ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI
1
354
1K1S
1
354
P96022
A
1
1
354
1
CYS
engineered mutation
SER
31
1K1S
A
P96022
UNP
31
31
5
3
2
4
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
98
A
LYS
98
A
SER
103
A
SER
103
A
GLU
106
A
GLU
106
A
ASP
110
A
ASP
110
A
VAL
3
A
VAL
3
A
PHE
8
A
PHE
8
A
VAL
141
A
VAL
141
A
ALA
146
A
ALA
146
A
LEU
164
A
LEU
164
A
VAL
166
A
VAL
166
A
GLY
41
A
GLY
41
A
ALA
46
A
ALA
46
A
LEU
28
A
LEU
28
A
TYR
33
A
TYR
33
A
ILE
72
A
ILE
72
A
VAL
74
A
VAL
74
A
LYS
241
A
LYS
241
A
SER
242
A
SER
242
A
ILE
341
A
ILE
341
A
ILE
342
A
ILE
342
A
HIS
246
A
HIS
246
A
THR
256
A
THR
256
A
VAL
331
A
VAL
331
A
ASP
339
A
ASP
339
A
ARG
283
A
ARG
283
A
MET
290
A
MET
290
A
ILE
295
A
ILE
295
A
LYS
301
A
LYS
301
171
P 62