0.019701 0.000000 0.000000 0.000000 0.017379 0.000000 0.000000 0.000000 0.016436 0.00000 0.00000 0.00000 Mahalingam, B. Boross, P. Wang, Y.-F. Louis, J.M. Fischer, C. Tozser, J. W Harrison, R. Weber, I.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 50.759 57.541 60.841 C40 H70 N11 O8 1 833.053 N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide Inhibitor analogues of CA-p2 peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N C N 8 N N N 9 N C N 10 N N N 11 N N N 12 N N N 13 S C N 14 N C N 15 N O N 16 N C N 17 N C N 18 N C N 19 N N N 20 S C N 21 N C N 22 N C N 23 N C N 24 N C N 25 N C N 26 N N N 27 S C N 28 N C N 29 N O N 30 N C Y 31 N C Y 32 N C Y 33 N C Y 34 N C Y 35 N C Y 36 N C N 37 N N N 38 S C N 39 N C N 40 N O N 41 N C N 42 N C N 43 N C N 44 N O N 45 N O N 46 N N N 47 S C N 48 N C N 49 N O N 50 N C N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N C N 59 N N N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N N N 131 S C N 132 N C N 133 N O N 134 N C N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N N N 144 S C N 145 N C N 146 N O N 147 N C N 148 N C N 149 N C N 150 N N N 151 N C N 152 N N N 153 N N N 154 N O N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C N 175 N C N 176 N O N 177 N N N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N N N 188 S C N 189 N C N 190 N O N 191 N C N 192 N C N 193 N O N 194 N O N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N N N 204 R C N 205 N C N 206 N O N 207 N C N 208 N S N 209 N O N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N C N 224 N O N 225 N N N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C N 242 N C N 243 N C N 244 N O N 245 N O N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 N C N 258 N C N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C Y 271 N C Y 272 N N Y 273 N C Y 274 N C Y 275 N N N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N O N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 S C N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N C N 318 N C N 319 N C N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C N 339 N C N 340 N C N 341 N C N 342 N N N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C N 364 N C N 365 N S N 366 N C N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N N N 380 S C N 381 N C N 382 N O N 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N N N 403 S C N 404 N C N 405 N O N 406 N C N 407 N C N 408 N C N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N N N 420 S C N 421 N C N 422 N O N 423 N C N 424 N O N 425 N O N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 R C N 438 N O N 439 N C N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N N N 451 S C N 452 N C N 453 N O N 454 N C Y 455 N C Y 456 N C Y 457 N C Y 458 N N Y 459 N C Y 460 N C Y 461 N C Y 462 N C Y 463 N C N 464 N O N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N N N 478 S C N 479 N C N 480 N O N 481 N C Y 482 N C Y 483 N C Y 484 N C Y 485 N C Y 486 N C Y 487 N C N 488 N O N 489 N O N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N N N 502 S C N 503 N C N 504 N O N 505 N C N 506 N C N 507 N C N 508 N O N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N doub N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N sing N 67 N sing Y 68 N doub Y 69 N sing Y 70 N sing N 71 N sing Y 72 N doub N 73 N sing Y 74 N doub N 75 N sing Y 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N doub N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing Y 269 N sing Y 270 N doub Y 271 N doub N 272 N sing Y 273 N sing N 274 N sing Y 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing Y 377 N doub Y 378 N sing Y 379 N sing N 380 N sing Y 381 N doub N 382 N sing Y 383 N doub N 384 N sing Y 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N doub N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N doub N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N doub N 442 N sing N 443 N sing N 444 N sing N 445 N sing Y 446 N doub Y 447 N sing Y 448 N sing N 449 N sing Y 450 N doub Y 451 N sing Y 452 N sing N 453 N sing Y 454 N sing Y 455 N doub N 456 N sing Y 457 N doub N 458 N sing Y 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N doub N 470 N sing N 471 N sing N 472 N sing N 473 N sing Y 474 N doub Y 475 N sing Y 476 N sing N 477 N sing Y 478 N doub N 479 N sing Y 480 N doub N 481 N sing Y 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N doub N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing US Proteins PSFGEY 0867 0887-3585 48 107 116 10.1002/prot.10140 12012342 Combining mutations in HIV-1 protease to understand mechanisms of resistance. 2002 10.2210/pdb1k2b/pdb pdb_00001k2b 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 90 1 CCD 1999-10-08 ADSC QUANTUM 4 Double-crystal, fixed-exit Si-III SINGLE WAVELENGTH M x-ray 1 1.037 1.0 X12B NSLS 1.037 SYNCHROTRON NSLS BEAMLINE X12B 10759.699 PROTEASE RETROPEPSIN 3.4.23.16 Q7K, l33I, L63I, C67A, C95A, N88D, L90M 2 man polymer 833.053 N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide 1 syn non-polymer 18.015 water 128 nat water Retropepsin, PR no no PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRDLMTQIGATLNF PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRDLMTQIGATLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia sample 11676 Human immunodeficiency virus 1 562 Escherichia coli 1 1.99 38.08 VAPOR DIFFUSION, HANGING DROP 20-50% Saturated Ammonium Sulphate, 10% DMSO, 0.25M citrate/0.5M phosphate buffer, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 database_2 software struct_ref_seq_dif struct_sheet struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Database references Derived calculations Refinement description Data collection Refinement description 1 0 2002-07-10 1 1 2008-04-27 1 2 2011-07-13 1 3 2012-12-12 1 4 2021-10-27 1 5 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _software.classification _software.name _struct_ref_seq_dif.details _struct_sheet.number_strands _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2001-09-26 REL REL 0Q4 N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide HOH water THE INHIBITOR 0Q4 WAS CHEMICALLY SYNTHESIZED AND IS ANALOGOUS TO THE CA-P2 PROCESSING SITE INHIBITOR IN HIV-1 IT HAS A REDUCED PEPTIDE (-CH2-NH) INSTEAD OF THE NORMAL PEPTIDE LINK (-CO-NH). MUTATIONS Q7K, L33I, L63I, C67A, C95A, HAVE BEEN MADE TO STABILIZE THE PROTEASE FROM AUTOPROTEOLYSIS, WHILE RETAINING ACTIVITY SIMILAR TO WILD-TYPE HIV-1 PROTEASE 1DAZ PDB ENTRY 1DAZ PDB experimental model Inhibitor N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl- L-alanyl-L-norleucinamide Peptide-like 0Q4 401 2 0Q4 0Q4 401 A HOH 501 3 HOH HOH 501 A HOH 502 3 HOH HOH 502 A HOH 505 3 HOH HOH 505 A HOH 506 3 HOH HOH 506 A HOH 509 3 HOH HOH 509 A HOH 518 3 HOH HOH 518 A HOH 519 3 HOH HOH 519 A HOH 520 3 HOH HOH 520 A HOH 521 3 HOH HOH 521 A HOH 525 3 HOH HOH 525 A HOH 528 3 HOH HOH 528 A HOH 534 3 HOH HOH 534 A HOH 537 3 HOH HOH 537 A HOH 541 3 HOH HOH 541 A HOH 542 3 HOH HOH 542 A HOH 543 3 HOH HOH 543 A HOH 544 3 HOH HOH 544 A HOH 546 3 HOH HOH 546 A HOH 547 3 HOH HOH 547 A HOH 548 3 HOH HOH 548 A HOH 549 3 HOH HOH 549 A HOH 551 3 HOH HOH 551 A HOH 552 3 HOH HOH 552 A HOH 553 3 HOH HOH 553 A HOH 556 3 HOH HOH 556 A HOH 558 3 HOH HOH 558 A HOH 559 3 HOH HOH 559 A HOH 563 3 HOH HOH 563 A HOH 564 3 HOH HOH 564 A HOH 566 3 HOH HOH 566 A HOH 567 3 HOH HOH 567 A HOH 569 3 HOH HOH 569 A HOH 571 3 HOH HOH 571 A HOH 574 3 HOH HOH 574 A HOH 575 3 HOH HOH 575 A HOH 576 3 HOH HOH 576 A HOH 578 3 HOH HOH 578 A HOH 581 3 HOH HOH 581 A HOH 582 3 HOH HOH 582 A HOH 584 3 HOH HOH 584 A HOH 587 3 HOH HOH 587 A HOH 589 3 HOH HOH 589 A HOH 591 3 HOH HOH 591 A HOH 596 3 HOH HOH 596 A HOH 597 3 HOH HOH 597 A HOH 598 3 HOH HOH 598 A HOH 600 3 HOH HOH 600 A HOH 602 3 HOH HOH 602 A HOH 603 3 HOH HOH 603 A HOH 608 3 HOH HOH 608 A HOH 610 3 HOH HOH 610 A HOH 612 3 HOH HOH 612 A HOH 615 3 HOH HOH 615 A HOH 622 3 HOH HOH 622 A HOH 623 3 HOH HOH 623 A HOH 624 3 HOH HOH 624 A HOH 625 3 HOH HOH 625 A HOH 626 3 HOH HOH 626 A HOH 627 3 HOH HOH 627 A HOH 503 3 HOH HOH 503 B HOH 504 3 HOH HOH 504 B HOH 507 3 HOH HOH 507 B HOH 508 3 HOH HOH 508 B HOH 510 3 HOH HOH 510 B HOH 511 3 HOH HOH 511 B HOH 512 3 HOH HOH 512 B HOH 513 3 HOH HOH 513 B HOH 514 3 HOH HOH 514 B HOH 515 3 HOH HOH 515 B HOH 516 3 HOH HOH 516 B HOH 517 3 HOH HOH 517 B HOH 522 3 HOH HOH 522 B HOH 523 3 HOH HOH 523 B HOH 524 3 HOH HOH 524 B HOH 526 3 HOH HOH 526 B HOH 527 3 HOH HOH 527 B HOH 529 3 HOH HOH 529 B HOH 530 3 HOH HOH 530 B HOH 531 3 HOH HOH 531 B HOH 532 3 HOH HOH 532 B HOH 533 3 HOH HOH 533 B HOH 535 3 HOH HOH 535 B HOH 536 3 HOH HOH 536 B HOH 538 3 HOH HOH 538 B HOH 539 3 HOH HOH 539 B HOH 540 3 HOH HOH 540 B HOH 545 3 HOH HOH 545 B HOH 550 3 HOH HOH 550 B HOH 554 3 HOH HOH 554 B HOH 555 3 HOH HOH 555 B HOH 557 3 HOH HOH 557 B HOH 560 3 HOH HOH 560 B HOH 561 3 HOH HOH 561 B HOH 562 3 HOH HOH 562 B HOH 565 3 HOH HOH 565 B HOH 568 3 HOH HOH 568 B HOH 570 3 HOH HOH 570 B HOH 572 3 HOH HOH 572 B HOH 573 3 HOH HOH 573 B HOH 577 3 HOH HOH 577 B HOH 579 3 HOH HOH 579 B HOH 580 3 HOH HOH 580 B HOH 583 3 HOH HOH 583 B HOH 585 3 HOH HOH 585 B HOH 586 3 HOH HOH 586 B HOH 588 3 HOH HOH 588 B HOH 590 3 HOH HOH 590 B HOH 592 3 HOH HOH 592 B HOH 593 3 HOH HOH 593 B HOH 594 3 HOH HOH 594 B HOH 595 3 HOH HOH 595 B HOH 599 3 HOH HOH 599 B HOH 601 3 HOH HOH 601 B HOH 604 3 HOH HOH 604 B HOH 605 3 HOH HOH 605 B HOH 606 3 HOH HOH 606 B HOH 607 3 HOH HOH 607 B HOH 609 3 HOH HOH 609 B HOH 611 3 HOH HOH 611 B HOH 613 3 HOH HOH 613 B HOH 614 3 HOH HOH 614 B HOH 616 3 HOH HOH 616 B HOH 617 3 HOH HOH 617 B HOH 618 3 HOH HOH 618 B HOH 619 3 HOH HOH 619 B HOH 620 3 HOH HOH 620 B HOH 621 3 HOH HOH 621 B HOH 628 3 HOH HOH 628 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A ILE 33 n 33 ILE 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A ILE 63 n 63 ILE 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A ALA 67 n 67 ALA 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASP 88 n 88 ASP 88 A LEU 89 n 89 LEU 89 A MET 90 n 90 MET 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A ALA 95 n 95 ALA 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B LYS 7 n 7 LYS 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASP 25 n 25 ASP 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B ILE 33 n 33 ILE 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B MET 36 n 36 MET 36 B SER 37 n 37 SER 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B MET 46 n 46 MET 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B ILE 63 n 63 ILE 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B ALA 67 n 67 ALA 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B ALA 71 n 71 ALA 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B VAL 82 n 82 VAL 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASP 88 n 88 ASP 88 B LEU 89 n 89 LEU 89 B MET 90 n 90 MET 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B ALA 95 n 95 ALA 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B author_and_software_defined_assembly PISA 2 dimeric 5360 -30 9120 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 97 B O LEU 97 B O ASN 98 B O ASN 98 A N THR 96 A N THR 96 A O LEU 97 A O LEU 97 B N ILE 3 B N ILE 3 A N GLY 49 A N GLY 49 A O GLY 52 A O GLY 52 A N GLU 65 A N GLU 65 A O LYS 14 A O LYS 14 A N ILE 15 A N ILE 15 A O GLN 18 A O GLN 18 A N LEU 23 A N LEU 23 A O ASN 83 A O ASN 83 A N ILE 84 A N ILE 84 A O VAL 32 A O VAL 32 A N ILE 33 A N ILE 33 A O LEU 76 A O LEU 76 A O VAL 77 A O VAL 77 A N ARG 57 A N ARG 57 B O ILE 47 B O ILE 47 B N ILE 54 B N ILE 54 B O GLU 65 B O GLU 65 B N LYS 14 B N LYS 14 B N ILE 15 B N ILE 15 B O GLN 18 B O GLN 18 B O LEU 23 B O LEU 23 B N ILE 85 B N ILE 85 B N ILE 84 B N ILE 84 B O VAL 32 B O VAL 32 B N ILE 33 B N ILE 33 B O LEU 76 B O LEU 76 B N VAL 77 B N VAL 77 B O ARG 57 B O ARG 57 0.2780000 0.2150000 1.7 8.0 1972 19780 RANDOM 1 Isotropic FREE R 2 MOLECULAR REPLACEMENT PDB ENTRY 1DAZ ENGH AND HUBER 1.7 8.0 128 1699 59 0 1512 .011 2.183 25.523 1.446 0.3784000 0.3196000 1.76 183 1886 1.7 25 1K2B 20000 20000 2 2 0.0420000 1 10.8 4.1 99 0.2480000 1.7 1.76 5.1 1958 1 98.4 phasing AMoRE refinement X-PLOR data processing Adxv data scaling SCALEPACK Combining Mutations in HIV-1 Protease to Understand Mechanisms of Resistance 1 N N 1 N N 2 N N 3 N N 3 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 B GLY 86 B GLY 86 HELX_P B THR 91 B THR 91 1 2 6 HYDROLASE/HYDROLASE INHIBITOR HIV-1 PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX POL_HV1B5 UNP 1 501 P04587 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 501 599 1K2B 1 99 P04587 A 1 1 99 501 599 1K2B 1 99 P04587 B 1 1 99 1 GLN SEE REMARK 999 LYS 7 1K2B A P04587 UNP 507 7 1 LEU SEE REMARK 999 ILE 33 1K2B A P04587 UNP 533 33 1 LEU SEE REMARK 999 ILE 63 1K2B A P04587 UNP 563 63 1 CYS SEE REMARK 999 ALA 67 1K2B A P04587 UNP 567 67 1 ASN engineered mutation ASP 88 1K2B A P04587 UNP 588 88 1 LEU engineered mutation MET 90 1K2B A P04587 UNP 590 90 1 CYS SEE REMARK 999 ALA 95 1K2B A P04587 UNP 595 95 2 GLN SEE REMARK 999 LYS 7 1K2B B P04587 UNP 507 7 2 LEU SEE REMARK 999 ILE 33 1K2B B P04587 UNP 533 33 2 LEU SEE REMARK 999 ILE 63 1K2B B P04587 UNP 563 63 2 CYS SEE REMARK 999 ALA 67 1K2B B P04587 UNP 567 67 2 ASN engineered mutation ASP 88 1K2B B P04587 UNP 588 88 2 LEU engineered mutation MET 90 1K2B B P04587 UNP 590 90 2 CYS SEE REMARK 999 ALA 95 1K2B B P04587 UNP 595 95 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel A GLN 2 A GLN 2 A THR 4 A THR 4 B THR 96 B THR 96 B ASN 98 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B THR 4 B THR 4 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A ASN 83 A ASN 83 A ILE 85 A ILE 85 A VAL 32 A VAL 32 A GLU 34 A GLU 34 A HIS 69 A HIS 69 A GLY 78 A GLY 78 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 43 B LYS 43 B GLY 49 B GLY 49 B PHE 53 B PHE 53 B ILE 66 B ILE 66 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B GLN 18 B GLN 18 B LEU 24 B LEU 24 B ILE 84 B ILE 84 B ILE 85 B ILE 85 B VAL 32 B VAL 32 B ILE 33 B ILE 33 B HIS 69 B HIS 69 B VAL 77 B VAL 77 B PHE 53 B PHE 53 B ILE 66 B ILE 66 BINDING SITE FOR RESIDUE 0Q4 A 401 A 0Q4 401 Software 38 A ARG 8 A ARG 8 38 1_555 A LEU 23 A LEU 23 38 1_555 A ASP 25 A ASP 25 38 1_555 A GLY 27 A GLY 27 38 1_555 A ALA 28 A ALA 28 38 1_555 A ASP 29 A ASP 29 38 1_555 A ASP 30 A ASP 30 38 1_555 A LYS 45 A LYS 45 38 1_555 A MET 46 A MET 46 38 1_555 A ILE 47 A ILE 47 38 1_555 A GLY 48 A GLY 48 38 1_555 A GLY 49 A GLY 49 38 1_555 A ILE 50 A ILE 50 38 1_555 A PHE 53 A PHE 53 38 1_555 A PRO 81 A PRO 81 38 1_555 A VAL 82 A VAL 82 38 1_555 A ILE 84 A ILE 84 38 1_555 A HOH 501 D HOH 38 1_555 A HOH 509 D HOH 38 1_555 B ARG 8 B ARG 8 38 1_555 B LEU 23 B LEU 23 38 1_555 B ASP 25 B ASP 25 38 1_555 B GLY 27 B GLY 27 38 1_555 B ALA 28 B ALA 28 38 1_555 B ASP 29 B ASP 29 38 1_555 B ASP 30 B ASP 30 38 1_555 B LYS 45 B LYS 45 38 1_555 B MET 46 B MET 46 38 1_555 B ILE 47 B ILE 47 38 1_555 B GLY 48 B GLY 48 38 1_555 B GLY 49 B GLY 49 38 1_555 B ILE 50 B ILE 50 38 1_555 B PRO 81 B PRO 81 38 1_555 B VAL 82 B VAL 82 38 1_555 B ILE 84 B ILE 84 38 1_555 B HOH 510 E HOH 38 1_555 B HOH 539 E HOH 38 1_555 B HOH 570 E HOH 38 3_655 19 P 21 21 21