1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Lam, S.L.
Ip, L.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
US
J.Biomol.Struct.Dyn.
JBSDD6
0646
0739-1102
19
907
917
11922844
Low temperature solution structures and base pair stacking of double helical d(CGTACG)(2).
2002
10.2210/pdb1k2j/pdb
pdb_00001k2j
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
1809.217
5'-D(*CP*GP*TP*AP*CP*G)-3'
2
syn
polymer
no
no
(DC)(DG)(DT)(DA)(DC)(DG)
CGTACG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
-12.834
1
19
A
1
B
12
-1.531
A_DC1:DG12_B
1
-10.024
0.276
0.292
-0.177
17.170
1
19
A
2
B
11
-2.068
A_DG2:DC11_B
2
-9.118
-0.441
0.648
-0.229
-3.410
1
20
A
3
B
10
-2.183
A_DT3:DA10_B
3
-18.086
0.159
0.622
-0.225
3.099
1
20
A
4
B
9
-2.094
A_DA4:DT9_B
4
-17.941
-0.158
0.622
-0.226
-17.455
1
19
A
5
B
8
-2.009
A_DC5:DG8_B
5
-8.571
0.442
0.658
-0.227
11.810
1
19
A
6
B
7
-1.554
A_DG6:DC7_B
6
-10.887
-0.279
0.280
-0.183
2.681
39.062
A
A
1
2
-4.316
B
B
12
11
2.752
-2.881
-0.159
0.962
AA_DC1DG2:DC11DG12_BB
1
-2.578
3.861
38.877
1.728
-0.020
3.414
34.609
A
A
2
3
12.438
B
B
11
10
3.699
7.346
0.310
-0.987
AA_DG2DT3:DA10DC11_BB
2
-0.193
0.326
33.843
-2.904
-0.554
2.773
49.419
A
A
3
4
-15.432
B
B
10
9
3.119
-12.772
0.004
1.036
AA_DT3DA4:DT9DA10_BB
3
-0.001
0.001
47.840
2.110
-0.005
3.413
34.585
A
A
4
5
12.579
B
B
9
8
3.701
7.423
-0.308
-0.988
AA_DA4DC5:DG8DT9_BB
4
0.140
-0.238
33.802
-2.922
0.543
2.692
39.221
A
A
5
6
-4.261
B
B
8
7
2.762
-2.856
0.130
0.945
AA_DC5DG6:DC7DG8_BB
5
2.532
-3.778
39.042
1.693
0.059
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-04-10
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
1K2K contains the same nucleic acid structure.
RCSB
Y
RCSB
2001-09-27
REL
REL
from soild-phase DNA synthesizer
sample
1
7.0
278
K
using AMBER 4.0
restrained molecular dynamics and energy minimization
3.1 mM (total strand concentration) 5'-d(CGTACG)2 in 10 mM sodium phosphate pH 7.0
D2O
Bruker
processing
XwinNMR
2.1
James et al.
data analysis
MARDIGRAS
3.5
Kollman et al.
refinement
Amber
4.0
500
Bruker
ARX
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
T
3
n
3
DT
3
A
A
4
n
4
DA
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
C
7
n
1
DC
7
B
G
8
n
2
DG
8
B
T
9
n
3
DT
9
B
A
10
n
4
DA
10
B
C
11
n
5
DC
11
B
G
12
n
6
DG
12
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DG
2
0.117
SIDE CHAIN
1
A
DA
4
0.132
SIDE CHAIN
1
A
DG
6
0.096
SIDE CHAIN
1
B
DG
8
0.118
SIDE CHAIN
1
B
DA
10
0.131
SIDE CHAIN
1
B
DG
12
0.096
SIDE CHAIN
1
5.36
0.30
108.30
113.66
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
5.49
0.60
106.00
111.49
A
A
A
O4'
C4'
C3'
DT
DT
DT
3
3
3
N
1
8.35
1.10
109.80
118.15
A
A
A
C5'
C4'
O4'
DT
DT
DT
3
3
3
N
1
3.76
0.30
108.30
112.06
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
2.15
0.30
108.30
110.45
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
4.12
0.60
106.00
110.12
A
A
A
O4'
C4'
C3'
DC
DC
DC
5
5
5
N
1
7.07
1.10
109.80
116.87
A
A
A
C5'
C4'
O4'
DC
DC
DC
5
5
5
N
1
2.53
0.40
120.30
122.83
A
A
A
C6
N1
C2
DC
DC
DC
5
5
5
N
1
5.64
0.30
108.30
113.94
B
B
B
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
5.48
0.60
106.00
111.48
B
B
B
O4'
C4'
C3'
DT
DT
DT
9
9
9
N
1
8.31
1.10
109.80
118.11
B
B
B
C5'
C4'
O4'
DT
DT
DT
9
9
9
N
1
3.70
0.30
108.30
112.00
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
1
2.09
0.30
108.30
110.39
B
B
B
O4'
C1'
N9
DA
DA
DA
10
10
10
N
1
4.11
0.60
106.00
110.11
B
B
B
O4'
C4'
C3'
DC
DC
DC
11
11
11
N
1
7.23
1.20
115.70
122.93
B
B
B
C5'
C4'
C3'
DC
DC
DC
11
11
11
N
1
6.96
1.10
109.80
116.76
B
B
B
C5'
C4'
O4'
DC
DC
DC
11
11
11
N
1
2.54
0.40
120.30
122.84
B
B
B
C6
N1
C2
DC
DC
DC
11
11
11
N
NMR MINIMIZED AVERAGE STRUCTURE OF d(CGTACG)2
1
N
N
1
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
12
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
12
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
12
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
11
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
11
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
11
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
B
DA
10
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
B
DA
10
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
9
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
9
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
7
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
7
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
7
B
N4
DC
1
1_555
DNA
self-complementary DNA, DNA
1K2J
PDB
1
1K2J
1
6
1K2J
1
6
1K2J
A
1
1
6
7
12
1K2J
7
12
1K2J
B
1
1
6