1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Lam, S.L.
Ip, L.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
US
J.Biomol.Struct.Dyn.
JBSDD6
0646
0739-1102
19
907
917
11922844
Low temperature solution structures and base pair stacking of double helical d(CGTACG)(2).
2002
10.2210/pdb1k2k/pdb
pdb_00001k2k
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
1809.217
5'-D(*CP*GP*TP*AP*CP*G)-3'
2
syn
polymer
no
no
(DC)(DG)(DT)(DA)(DC)(DG)
CGTACG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
-35.676
1
19
A
1
B
12
-0.501
A_DC1:DG12_B
1
8.759
0.214
0.629
-0.010
-1.326
1
19
A
2
B
11
-2.184
A_DG2:DC11_B
2
-24.276
-0.448
0.369
-0.280
-9.612
1
20
A
3
B
10
-4.308
A_DT3:DA10_B
3
-12.647
0.002
0.695
-0.193
9.698
1
20
A
4
B
9
-4.385
A_DA4:DT9_B
4
-12.679
0.000
0.698
-0.193
1.356
1
19
A
5
B
8
-2.221
A_DC5:DG8_B
5
-24.311
0.448
0.374
-0.281
35.801
1
19
A
6
B
7
-0.438
A_DG6:DC7_B
6
9.343
-0.218
0.629
-0.010
2.780
43.523
A
A
1
2
-6.381
B
B
12
11
2.854
-4.709
-1.321
2.001
AA_DC1DG2:DC11DG12_BB
1
-5.924
8.026
42.891
3.093
1.286
3.469
31.621
A
A
2
3
-4.144
B
B
11
10
3.419
-2.251
-0.394
-0.511
AA_DG2DT3:DA10DC11_BB
2
-3.768
6.936
31.323
-0.497
-0.015
2.577
46.882
A
A
3
4
-14.873
B
B
10
9
2.767
-11.721
-0.005
0.474
AA_DT3DA4:DT9DA10_BB
3
-0.026
0.033
45.474
1.402
0.005
3.470
31.612
A
A
4
5
-4.103
B
B
9
8
3.420
-2.229
0.393
-0.511
AA_DA4DC5:DG8DT9_BB
4
3.746
-6.897
31.317
-0.501
0.013
2.766
43.405
A
A
5
6
-6.694
B
B
8
7
2.859
-4.928
1.316
2.033
AA_DC5DG6:DC7DG8_BB
5
5.773
-7.842
42.768
3.163
-1.294
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-04-10
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
1K2J contains the same nucleic acid structure.
RCSB
Y
RCSB
2001-09-28
REL
REL
from solid-phase DNA synthesizer
sample
1
7.0
288
K
using AMBER 4.0
restrained molecular dynamics and energy minimization
3.1 mM (total strand concentration) 5'-d(CGTACG)2 in 10 mM sodium phosphate pH 7.0
D2O
Bruker
processing
XwinNMR
2.1
James et al.
data analysis
MARDIGRAS
3.5
Kollman et al.
refinement
Amber
4.0
500
Bruker
ARX
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
T
3
n
3
DT
3
A
A
4
n
4
DA
4
A
C
5
n
5
DC
5
A
G
6
n
6
DG
6
A
C
7
n
1
DC
7
B
G
8
n
2
DG
8
B
T
9
n
3
DT
9
B
A
10
n
4
DA
10
B
C
11
n
5
DC
11
B
G
12
n
6
DG
12
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DG
2
0.112
SIDE CHAIN
1
A
DT
3
0.070
SIDE CHAIN
1
A
DA
4
0.097
SIDE CHAIN
1
B
DG
8
0.112
SIDE CHAIN
1
B
DT
9
0.070
SIDE CHAIN
1
B
DA
10
0.096
SIDE CHAIN
1
4.65
0.30
108.30
112.95
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
9.09
1.10
109.80
118.89
A
A
A
C5'
C4'
O4'
DT
DT
DT
3
3
3
N
1
3.67
0.30
108.30
111.97
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
5.46
0.60
106.00
111.46
A
A
A
O4'
C4'
C3'
DC
DC
DC
5
5
5
N
1
12.56
1.10
109.80
122.36
A
A
A
C5'
C4'
O4'
DC
DC
DC
5
5
5
N
1
3.20
0.50
106.80
110.00
A
A
A
O4'
C1'
C2'
DG
DG
DG
6
6
6
N
1
4.42
0.30
108.30
112.72
B
B
B
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
9.11
1.10
109.80
118.91
B
B
B
C5'
C4'
O4'
DT
DT
DT
9
9
9
N
1
3.74
0.30
108.30
112.04
B
B
B
O4'
C1'
N9
DA
DA
DA
10
10
10
N
1
5.45
0.60
106.00
111.45
B
B
B
O4'
C4'
C3'
DC
DC
DC
11
11
11
N
1
12.57
1.10
109.80
122.37
B
B
B
C5'
C4'
O4'
DC
DC
DC
11
11
11
N
1
3.10
0.50
106.80
109.90
B
B
B
O4'
C1'
C2'
DG
DG
DG
12
12
12
N
NMR MINIMIZED AVERAGE STRUCTURE OF d(CGTACG)2
1
N
N
1
N
N
hydrog
DC-DC MISPAIR
A
DC
1
A
N3
DC
1
1_555
B
DC
11
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
12
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
12
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
12
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
11
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
11
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
11
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
B
DA
10
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
B
DA
10
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
9
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
9
B
O4
DT
3
1_555
hydrog
DC-DC MISPAIR
A
DC
5
A
N4
DC
5
1_555
B
DC
7
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
7
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
7
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
7
B
N4
DC
1
1_555
DNA
self-complementary DNA, DNA
1K2K
PDB
1
1K2K
1
6
1K2K
1
6
1K2K
A
1
1
6
7
12
1K2K
7
12
1K2K
B
1
1
6