0.033890 0.000000 0.000000 0.000000 0.018609 0.000000 0.000000 0.000000 0.024962 0.000000 0.000000 0.000000 Teixeira, S.C.M. Thorpe, J.H. Todd, A.K. Powell, H.R. Adams, A. Wakelin, L.P.G. Denny, W.A. Cardin, C.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 29.507 53.738 40.061 C44 H54 N8 O2 726.952 BIS-(9-OCTYLAMINO(2-DIMETHYLAMINOETHYL)ACRIDINE-4-CARBOXAMIDE BIS-DACA non-polymer Co 2 58.933 COBALT (II) ION non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Y 1 N C Y 2 N C Y 3 N C Y 4 N C Y 5 N C Y 6 N C Y 7 N C Y 8 N C Y 9 N C Y 10 N C Y 11 N C Y 12 N C Y 13 N C Y 14 N N N 15 N N N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N C N 22 N N N 23 N C N 24 N C N 25 N N N 26 N C N 27 N C N 28 N C N 29 N C N 30 N C N 31 N C N 32 N N Y 33 N C Y 34 N C Y 35 N C Y 36 N C Y 37 N C Y 38 N C Y 39 N C Y 40 N C Y 41 N C Y 42 N C Y 43 N C Y 44 N C Y 45 N C Y 46 N N N 47 N C N 48 N O N 49 N N N 50 N C N 51 N C N 52 N N N 53 N C N 54 N C N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N CO N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 N C N 121 R C Y 122 N N Y 123 N C Y 124 N N Y 125 N C Y 126 N C N 127 N N Y 128 N N Y 129 N C Y 130 N N Y 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N O N 147 N P N 148 N O N 149 N O N 150 N O N 151 N C N 152 R C N 153 N O N 154 S C N 155 N O N 156 N C N 157 R C N 158 N N N 159 N C N 160 N O N 161 N N N 162 N C N 163 N N N 164 N C N 165 N C N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N O N 181 N P N 182 N O N 183 N O N 184 N O N 185 N C N 186 R C N 187 N O N 188 S C N 189 N O N 190 N C N 191 R C Y 192 N N Y 193 N C Y 194 N N Y 195 N C N 196 N C N 197 N O N 198 N N N 199 N C N 200 N N N 201 N N Y 202 N C N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N O N 218 N P N 219 N O N 220 N O N 221 N O N 222 N C N 223 R C N 224 N O N 225 S C N 226 N O N 227 N C N 228 R C N 229 N N N 230 N C N 231 N O N 232 N N N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N O N 254 N H N 255 N H Y 1 N doub Y 2 N sing N 3 N sing Y 4 N sing N 5 N sing Y 6 N doub N 7 N sing Y 8 N sing N 9 N sing Y 10 N doub Y 11 N sing N 12 N sing Y 13 N doub Y 14 N sing N 15 N sing Y 16 N sing N 17 N sing Y 18 N doub N 19 N sing Y 20 N sing N 21 N sing Y 22 N sing Y 23 N doub Y 24 N doub Y 25 N sing N 26 N sing N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing Y 72 N doub Y 73 N sing N 74 N sing Y 75 N sing N 76 N sing Y 77 N doub N 78 N sing Y 79 N sing N 80 N sing Y 81 N doub Y 82 N sing Y 83 N doub Y 84 N sing N 85 N sing Y 86 N sing N 87 N sing Y 88 N doub N 89 N sing Y 90 N sing N 91 N sing Y 92 N sing Y 93 N doub Y 94 N doub Y 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing Y 137 N sing Y 138 N sing Y 139 N doub N 140 N sing Y 141 N sing Y 142 N sing Y 143 N doub N 144 N sing Y 145 N doub N 146 N sing N 147 N sing Y 148 N sing Y 149 N doub N 150 N sing Y 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing Y 210 N sing Y 211 N sing Y 212 N doub N 213 N sing Y 214 N sing N 215 N sing Y 216 N doub N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing UK J.MOL.BIOL. JMOBAK 0070 0022-2836 323 167 171 10.1016/S0022-2836(02)00923-3 12381312 Structural Characterisation of Bisintercalation in Higher-order DNA at a Junction-like Quadruplex 2002 10.2210/pdb1k2l/pdb pdb_00001k2l 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100 1 IMAGE PLATE 1996-11-15 MARRESEARCH Mirrors SINGLE WAVELENGTH M x-ray 1 0.979 1.0 X31 EMBL/DESY, HAMBURG 0.979 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 1809.217 5'-D(*CP*GP*TP*AP*CP*G)-3' 2 syn polymer 58.933 COBALT (II) ION 2 syn non-polymer 726.952 BIS-(9-OCTYLAMINO(2-DIMETHYLAMINOETHYL)ACRIDINE-4-CARBOXAMIDE 1 syn non-polymer 18.015 water 16 nat water no no (DC)(DG)(DT)(DA)(DC)(DG) CGTACG A,B polydeoxyribonucleotide n n n n n n 1 2.28 41.47 VAPOR DIFFUSION, SITTING DROP 6.5 Sodium cacodylate buffer, magnesium acetate, cobalt chloride, spermine, MPD, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 285.0K 285.0 Sodium cacodylate buffer 1 magnesium acetate 1 COCl2 1 spermine 1 MPD 1 magnesium acetate 2 COCl2 2 MPD 2 -25.477 1 19 A 2 B 5 -7.410 A_DG2:DC5_B 1 -1.731 -0.111 -0.730 -0.184 4.634 1 20 A 3 B 4 -5.287 A_DT3:DA4_B 2 -2.969 -0.631 -0.519 -0.056 -3.028 1 20 A 4 B 3 -0.139 A_DA4:DT3_B 3 4.782 -0.058 -0.047 0.071 11.249 1 19 A 5 B 2 0.509 A_DC5:DG2_B 4 6.819 0.358 -0.159 -0.143 2.569 23.750 A A 2 3 5.308 B B 5 4 2.537 2.179 -0.880 -0.289 AA_DG2DT3:DA4DC5_BB 1 -2.156 5.252 23.554 -1.266 1.582 3.411 39.944 A A 3 4 5.965 B B 4 3 3.510 4.063 0.239 -0.499 AA_DT3DA4:DT3DA4_BB 2 -3.572 5.243 39.591 -1.227 -0.787 2.855 26.760 A A 4 5 15.005 B B 3 2 3.041 6.866 0.209 -0.372 AA_DA4DC5:DG2DT3_BB 3 1.554 -3.397 25.834 -2.438 -0.082 chem_comp_atom chem_comp_bond database_2 diffrn_source pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-10-16 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _diffrn_source.pdbx_synchrotron_site _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id CRYSTAL STRUCTURE ANALYSIS OF D(CG(5-BRU)ACG) COMPLEXES TO A PHENAZINE RCSB Y RCSB 2001-09-28 REL REL CO COBALT (II) ION BDC BIS-(9-OCTYLAMINO(2-DIMETHYLAMINOETHYL)ACRIDINE-4-CARBOXAMIDE HOH water COB 10 2 CO CO 10 A DAC 1000 3 BDC BDC 1000 B CO5 100 2 CO CO 100 B HOH 2000 4 HOH HOH 2000 A HOH 2001 4 HOH HOH 2001 A HOH 2002 4 HOH HOH 2002 A HOH 2004 4 HOH HOH 2004 A HOH 2007 4 HOH HOH 2007 A COB 10 4 HOH HOH 2009 A COB 10 4 HOH HOH 2010 A HOH 2003 4 HOH HOH 2003 B HOH 2005 4 HOH HOH 2005 B HOH 2006 4 HOH HOH 2006 B HOH 2008 4 HOH HOH 2008 B CO5 100 4 HOH HOH 2011 B CO5 100 4 HOH HOH 2012 B CO5 100 4 HOH HOH 2013 B CO5 100 4 HOH HOH 2014 B CO5 100 4 HOH HOH 2015 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A T 3 n 3 DT 3 A A 4 n 4 DA 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A C 1 n 1 DC 1 B G 2 n 2 DG 2 B T 3 n 3 DT 3 B A 4 n 4 DA 4 B C 5 n 5 DC 5 B G 6 n 6 DG 6 B 0.2274 0.2452 0.2216 0.2388 0.2978 0.3268 78 92 4.6 4.7 1701 author_defined_assembly 2 dimeric A DG 6 A N7 DG 6 1_555 A CO 10 C CO CO 1_555 A DG 6 A N7 DG 6 3_556 175.0 A DG 6 A N7 DG 6 1_555 A CO 10 C CO CO 1_555 A HOH 2009 F O HOH 1_555 84.6 A DG 6 A N7 DG 6 3_556 A CO 10 C CO CO 1_555 A HOH 2009 F O HOH 1_555 92.0 A DG 6 A N7 DG 6 1_555 A CO 10 C CO CO 1_555 A HOH 2009 F O HOH 3_556 92.0 A DG 6 A N7 DG 6 3_556 A CO 10 C CO CO 1_555 A HOH 2009 F O HOH 3_556 84.6 A HOH 2009 F O HOH 1_555 A CO 10 C CO CO 1_555 A HOH 2009 F O HOH 3_556 95.5 A DG 6 A N7 DG 6 1_555 A CO 10 C CO CO 1_555 A HOH 2010 F O HOH 1_555 92.7 A DG 6 A N7 DG 6 3_556 A CO 10 C CO CO 1_555 A HOH 2010 F O HOH 1_555 91.0 A HOH 2009 F O HOH 1_555 A CO 10 C CO CO 1_555 A HOH 2010 F O HOH 1_555 89.2 A HOH 2009 F O HOH 3_556 A CO 10 C CO CO 1_555 A HOH 2010 F O HOH 1_555 173.7 A DG 6 A N7 DG 6 1_555 A CO 10 C CO CO 1_555 A HOH 2010 F O HOH 3_556 91.0 A DG 6 A N7 DG 6 3_556 A CO 10 C CO CO 1_555 A HOH 2010 F O HOH 3_556 92.7 A HOH 2009 F O HOH 1_555 A CO 10 C CO CO 1_555 A HOH 2010 F O HOH 3_556 173.7 A HOH 2009 F O HOH 3_556 A CO 10 C CO CO 1_555 A HOH 2010 F O HOH 3_556 89.2 A HOH 2010 F O HOH 1_555 A CO 10 C CO CO 1_555 A HOH 2010 F O HOH 3_556 86.4 B DG 2 B N7 DG 2 1_555 B CO 100 E CO CO 1_555 B HOH 2011 G O HOH 1_555 97.6 B DG 2 B N7 DG 2 1_555 B CO 100 E CO CO 1_555 B HOH 2012 G O HOH 1_555 95.7 B HOH 2011 G O HOH 1_555 B CO 100 E CO CO 1_555 B HOH 2012 G O HOH 1_555 92.7 B DG 2 B N7 DG 2 1_555 B CO 100 E CO CO 1_555 B HOH 2013 G O HOH 1_555 94.9 B HOH 2011 G O HOH 1_555 B CO 100 E CO CO 1_555 B HOH 2013 G O HOH 1_555 87.9 B HOH 2012 G O HOH 1_555 B CO 100 E CO CO 1_555 B HOH 2013 G O HOH 1_555 169.3 B DG 2 B N7 DG 2 1_555 B CO 100 E CO CO 1_555 B HOH 2014 G O HOH 1_555 88.7 B HOH 2011 G O HOH 1_555 B CO 100 E CO CO 1_555 B HOH 2014 G O HOH 1_555 172.5 B HOH 2012 G O HOH 1_555 B CO 100 E CO CO 1_555 B HOH 2014 G O HOH 1_555 90.9 B HOH 2013 G O HOH 1_555 B CO 100 E CO CO 1_555 B HOH 2014 G O HOH 1_555 87.3 B DG 2 B N7 DG 2 1_555 B CO 100 E CO CO 1_555 B HOH 2015 G O HOH 1_555 174.0 B HOH 2011 G O HOH 1_555 B CO 100 E CO CO 1_555 B HOH 2015 G O HOH 1_555 87.7 B HOH 2012 G O HOH 1_555 B CO 100 E CO CO 1_555 B HOH 2015 G O HOH 1_555 87.0 B HOH 2013 G O HOH 1_555 B CO 100 E CO CO 1_555 B HOH 2015 G O HOH 1_555 82.4 B HOH 2014 G O HOH 1_555 B CO 100 E CO CO 1_555 B HOH 2015 G O HOH 1_555 85.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CO 10 C CO 1 B O5' DC 1 B O5' DC 1 1 Y 1 B C5' DC 1 B C5' DC 1 1 Y 1 B C4' DC 1 B C4' DC 1 1 Y 1 B O4' DC 1 B O4' DC 1 1 Y 1 B C3' DC 1 B C3' DC 1 1 Y 1 B C2' DC 1 B C2' DC 1 1 Y 1 B C1' DC 1 B C1' DC 1 1 Y 1 B N1 DC 1 B N1 DC 1 1 Y 1 B C2 DC 1 B C2 DC 1 1 Y 1 B O2 DC 1 B O2 DC 1 1 Y 1 B N3 DC 1 B N3 DC 1 1 Y 1 B C4 DC 1 B C4 DC 1 1 Y 1 B N4 DC 1 B N4 DC 1 1 Y 1 B C5 DC 1 B C5 DC 1 1 Y 1 B C6 DC 1 B C6 DC 1 1 Y 1 B OP1 DC 5 B OP1 DC 5 1 Y 1 B CF4 BDC 1000 D CF4 BDC 1 1 N 1 B CF3 BDC 1000 D CF3 BDC 1 1 N 1 B CF2 BDC 1000 D CF2 BDC 1 1 N 1 B CF1 BDC 1000 D CF1 BDC 1 1 N 1 B N9' BDC 1000 D N9' BDC 1 1 N 1 B C5' BDC 1000 D C5' BDC 1 1 N 1 B C6' BDC 1000 D C6' BDC 1 1 N 1 B C7' BDC 1000 D C7' BDC 1 1 N 1 B C8' BDC 1000 D C8' BDC 1 1 N 1 B C9' BDC 1000 D C9' BDC 1 1 N 1 B C1' BDC 1000 D C1' BDC 1 1 N 1 B C2' BDC 1000 D C2' BDC 1 1 N 1 B C3' BDC 1000 D C3' BDC 1 1 N 1 B C4' BDC 1000 D C4' BDC 1 1 N 1 B CE' BDC 1000 D CE' BDC 1 1 N 1 B CD' BDC 1000 D CD' BDC 1 1 N 1 B CB' BDC 1000 D CB' BDC 1 1 N 1 B CC' BDC 1000 D CC' BDC 1 1 N 1 B NA' BDC 1000 D NA' BDC 1 1 N 1 B CB1 BDC 1000 D CB1 BDC 1 1 N 1 B O1X BDC 1000 D O1X BDC 1 1 N 1 B NB1 BDC 1000 D NB1 BDC 1 1 N 1 B CB2 BDC 1000 D CB2 BDC 1 1 N 1 B CB3 BDC 1000 D CB3 BDC 1 1 N 1 B NB2 BDC 1000 D NB2 BDC 1 1 N 1 B CB7 BDC 1000 D CB7 BDC 1 1 N 1 B CB8 BDC 1000 D CB8 BDC 1 1 N 1 24.03 1.40 114.30 138.33 A A A N1 C1' C2' DC DC DC 1 1 1 N 1 -6.03 0.70 108.00 101.97 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 8.26 1.20 119.70 127.96 A A A C3' O3' P DC DC DG 1 1 2 Y 1 -4.96 0.80 109.40 104.44 A A A O5' C5' C4' DG DG DG 2 2 2 N 1 -7.99 0.70 108.00 100.01 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 -5.45 0.70 108.00 102.55 A A A O4' C1' N9 DA DA DA 4 4 4 N 1 9.13 1.50 119.60 128.73 A A A OP1 P OP2 DC DC DC 5 5 5 N 1 18.34 1.40 114.30 132.64 A A A N1 C1' C2' DC DC DC 5 5 5 N 1 -4.92 0.70 108.00 103.08 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 10.33 1.60 120.90 131.23 A A A P O5' C5' DG DG DG 6 6 6 N 1 -9.97 0.70 108.00 98.03 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 -13.46 1.80 114.10 100.64 B B B C5' C4' C3' DG DG DG 2 2 2 N 1 6.79 0.90 103.10 109.89 B B B C4' C3' C2' DG DG DG 2 2 2 N 1 9.18 1.40 114.30 123.48 B B B N9 C1' C2' DG DG DG 2 2 2 N 1 -11.63 0.70 108.00 96.37 B B B O4' C1' N9 DG DG DG 2 2 2 N 1 9.70 1.20 119.70 129.40 B B B C3' O3' P DG DG DT 2 2 3 Y 1 -14.44 1.90 104.00 89.56 B B B O3' P O5' DG DT DT 2 3 3 Y 1 15.84 1.10 110.50 126.34 B B B O3' P OP2 DG DT DT 2 3 3 Y 1 12.24 1.60 120.90 133.14 B B B P O5' C5' DT DT DT 3 3 3 N 1 12.37 1.10 109.80 122.17 B B B C5' C4' O4' DT DT DT 3 3 3 N 1 14.39 1.40 114.30 128.69 B B B N1 C1' C2' DT DT DT 3 3 3 N 1 -4.91 0.70 108.00 103.09 B B B O4' C1' N1 DT DT DT 3 3 3 N 1 -7.98 0.80 109.40 101.42 B B B O5' C5' C4' DA DA DA 4 4 4 N 1 8.71 1.40 114.30 123.01 B B B N9 C1' C2' DA DA DA 4 4 4 N 1 -7.82 0.70 108.00 100.18 B B B O4' C1' N9 DA DA DA 4 4 4 N 1 9.40 1.40 114.30 123.70 B B B N1 C1' C2' DC DC DC 5 5 5 N 1 2.74 0.40 120.30 123.04 B B B C6 N1 C2 DC DC DC 5 5 5 N 1 15.29 1.60 120.90 136.19 B B B P O5' C5' DG DG DG 6 6 6 N 1 10.89 1.40 114.30 125.19 B B B N9 C1' C2' DG DG DG 6 6 6 N 1 -6.73 0.70 108.00 101.27 B B B O4' C1' N9 DG DG DG 6 6 6 N 1 A A C5' C4' DG DG 2 2 0.045 0.007 1.512 1.557 N 1 A A C1' N9 DG DG 2 2 0.095 0.013 1.488 1.583 N 1 A A O4' C1' DT DT 3 3 0.077 0.011 1.420 1.497 N 1 A A C1' N9 DG DG 6 6 0.106 0.013 1.488 1.594 N 1 B B O4' C1' DG DG 2 2 0.082 0.011 1.420 1.502 N 1 B B C1' N9 DG DG 2 2 0.097 0.013 1.488 1.585 N 1 B B O4' C1' DA DA 4 4 0.067 0.011 1.420 1.487 N 1 B B O4' C1' DG DG 6 6 0.073 0.011 1.420 1.493 N 1 B B C1' N9 DG DG 6 6 0.092 0.013 1.488 1.580 N 1 B B CE4 CE4 BDC BDC 1000 1000 1.52 1_555 2_475 0.3091 0.239 0.3268 0.2452 2.40 9.00 848 92 1971 1217 1140 4.7 RANDOM 1 FREE R 4 MOLECULAR REPLACEMENT ENGH AND HUBER 0 0.00 264.00 2.40 9.00 9 269 36 224 0 0.026 0.000 0.016 0.0001 0.000 0.000 0.053 0.000 0.009 0.000 0.322 2.48 95.38 2.28 13.5 1K2L 2063 2063 2 -3.0 0.071 1 11.57 88.06 2.28 2.36 93.8 data reduction DENZO data scaling SCALEPACK refinement SHELXL refinement SHELXL-97 STRUCTURAL CHARACTERIZATION OF BISINTERCALATION IN HIGHER-ORDER DNA AT A JUNCTION-LIKE QUADRUPLEX 1 N N 1 N N 2 N N 3 N N 2 N N 4 N N 4 N N metalc 1.902 A DG 6 A N7 DG 6 1_555 A CO 10 C CO CO 1_555 metalc 1.901 A DG 6 A N7 DG 6 3_556 A CO 10 C CO CO 1_555 metalc 1.937 A CO 10 C CO CO 1_555 A HOH 2009 F O HOH 1_555 metalc 1.938 A CO 10 C CO CO 1_555 A HOH 2009 F O HOH 3_556 metalc 2.043 A CO 10 C CO CO 1_555 A HOH 2010 F O HOH 1_555 metalc 2.043 A CO 10 C CO CO 1_555 A HOH 2010 F O HOH 3_556 metalc 1.916 B DG 2 B N7 DG 2 1_555 B CO 100 E CO CO 1_555 metalc 1.989 B CO 100 E CO CO 1_555 B HOH 2011 G O HOH 1_555 metalc 1.943 B CO 100 E CO CO 1_555 B HOH 2012 G O HOH 1_555 metalc 2.061 B CO 100 E CO CO 1_555 B HOH 2013 G O HOH 1_555 metalc 2.044 B CO 100 E CO CO 1_555 B HOH 2014 G O HOH 1_555 metalc 2.107 B CO 100 E CO CO 1_555 B HOH 2015 G O HOH 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 5 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 5 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 5 B N4 DC 5 1_555 hydrog WATSON-CRICK A DT 3 A N3 DT 3 1_555 B DA 4 B N1 DA 4 1_555 hydrog WATSON-CRICK A DT 3 A O4 DT 3 1_555 B DA 4 B N6 DA 4 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 3 B N3 DT 3 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 3 B O4 DT 3 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 2 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 2 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 2 B N2 DG 2 1_555 DNA DNA Strand Exchange, quadruplex, bisintercalation, DNA 1K2L PDB 1 1K2L 1 6 1K2L 1 6 1K2L A 1 1 6 1 6 1K2L 1 6 1K2L B 1 1 6 BINDING SITE FOR RESIDUE BDC B 1000 B BDC 1000 Software 5 BINDING SITE FOR RESIDUE CO A 10 A CO 10 Software 6 BINDING SITE FOR RESIDUE CO B 100 B CO 100 Software 6 A DC 1 A DC 1 5 3_455 A DG 2 A DG 2 5 2_475 A DG 2 A DG 2 5 1_555 B DC 5 B DC 5 5 1_555 B DG 6 B DG 6 5 1_555 A DG 6 A DG 6 6 1_555 A DG 6 A DG 6 6 3_556 A HOH 2009 F HOH 6 3_556 A HOH 2009 F HOH 6 1_555 A HOH 2010 F HOH 6 3_556 A HOH 2010 F HOH 6 1_555 B DG 2 B DG 2 6 1_555 B HOH 2011 G HOH 6 1_555 B HOH 2012 G HOH 6 1_555 B HOH 2013 G HOH 6 1_555 B HOH 2014 G HOH 6 1_555 B HOH 2015 G HOH 6 1_555 21 C 2 2 2