1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Banci, L. Bertini, I. Ciurli, S. Dikiy, A. Dittmer, J. Rosato, A. Sciara, G. Thompsett, A.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H34 Fe N4 O4 618.503 HEME C non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking GE Chembiochem 1439-4227 3 299 310 10.1002/1439-7633(20020402)3:4<299::AID-CBIC299>3.0.CO;2-0 11933230 NMR solution structure, backbone mobility, and homology modeling of c-type cytochromes from gram-positive bacteria. 2002 US Biochemistry BICHAW 0033 0006-2960 39 13115 13126 10.1021/bi000402j Crystal Structure of Oxidized Bacillus pasteurii cytochrome c-553 at 0.97-A Resolution 2000 GW J.Biol.Inorg.Chem. JJBCFA 2154 0949-8257 3 371 382 10.1007/s007750050247 Modulation of Bacillus pasteurii Cytochrome c553 Reduction Potential by Structural and Solution Parameters 1998 10.2210/pdb1k3h/pdb pdb_00001k3h 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 7115.937 cytochrome c-553 RESIDUES 22-92 1 man polymer 618.503 HEME C 1 syn non-polymer C553 no no VDAEAVVQQKCISCHGGDLTGASAPAIDKAGANYSEEEILDIILNGQGGMPGGIAKGAEAEAVAAWLAEKK VDAEAVVQQKCISCHGGDLTGASAPAIDKAGANYSEEEILDIILNGQGGMPGGIAKGAEAEAVAAWLAEKK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Sporosarcina Escherichia sample 1474 Sporosarcina pasteurii 562 Escherichia coli DH5alpha plasmid pEC86 database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-10-31 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1k3g is the Minimized family (30 conformers) of oxidized cytochrome c-553 from B. pasteurii. 1c75 is the X-ray structure of the cytochrome c-553 from B. pasteurii. RCSB Y RCSB 2001-10-03 REL REL HEC HEME C 1 2D NOESY HNHA 1D NOE 10 mM phosphate buffer 7.5 Ambient 288 K PSEUDOCONTACT SHIFTS WERE INCLUDED AS CONSTRAINTS BY MEANS OF MODIFIED DYANA AND SANDER MODULES (PSEUDODYANA, PSEUDOREM) (BANCI ET AL., 1997) torsion angle dynamics, restrained energy minimization 1-3 mM oxidized cytochrome c-553 in 10 mM phosphate buffer 90%H2O+10%D2O; 100% D2O Bruker processing XwinNMR 2.6 Xia data analysis XEASY 1.3.13 Guentert structure solution DYANA 1.5 Kollman refinement Amber 5.0 800 Bruker AVANCE 700 Bruker AVANCE 600 Bruker AVANCE HEC 93 2 HEC HEC 93 A VAL 22 n 1 VAL 22 A ASP 23 n 2 ASP 23 A ALA 24 n 3 ALA 24 A GLU 25 n 4 GLU 25 A ALA 26 n 5 ALA 26 A VAL 27 n 6 VAL 27 A VAL 28 n 7 VAL 28 A GLN 29 n 8 GLN 29 A GLN 30 n 9 GLN 30 A LYS 31 n 10 LYS 31 A CYS 32 n 11 CYS 32 A ILE 33 n 12 ILE 33 A SER 34 n 13 SER 34 A CYS 35 n 14 CYS 35 A HIS 36 n 15 HIS 36 A GLY 37 n 16 GLY 37 A GLY 38 n 17 GLY 38 A ASP 39 n 18 ASP 39 A LEU 40 n 19 LEU 40 A THR 41 n 20 THR 41 A GLY 42 n 21 GLY 42 A ALA 43 n 22 ALA 43 A SER 44 n 23 SER 44 A ALA 45 n 24 ALA 45 A PRO 46 n 25 PRO 46 A ALA 47 n 26 ALA 47 A ILE 48 n 27 ILE 48 A ASP 49 n 28 ASP 49 A LYS 50 n 29 LYS 50 A ALA 51 n 30 ALA 51 A GLY 52 n 31 GLY 52 A ALA 53 n 32 ALA 53 A ASN 54 n 33 ASN 54 A TYR 55 n 34 TYR 55 A SER 56 n 35 SER 56 A GLU 57 n 36 GLU 57 A GLU 58 n 37 GLU 58 A GLU 59 n 38 GLU 59 A ILE 60 n 39 ILE 60 A LEU 61 n 40 LEU 61 A ASP 62 n 41 ASP 62 A ILE 63 n 42 ILE 63 A ILE 64 n 43 ILE 64 A LEU 65 n 44 LEU 65 A ASN 66 n 45 ASN 66 A GLY 67 n 46 GLY 67 A GLN 68 n 47 GLN 68 A GLY 69 n 48 GLY 69 A GLY 70 n 49 GLY 70 A MET 71 n 50 MET 71 A PRO 72 n 51 PRO 72 A GLY 73 n 52 GLY 73 A GLY 74 n 53 GLY 74 A ILE 75 n 54 ILE 75 A ALA 76 n 55 ALA 76 A LYS 77 n 56 LYS 77 A GLY 78 n 57 GLY 78 A ALA 79 n 58 ALA 79 A GLU 80 n 59 GLU 80 A ALA 81 n 60 ALA 81 A GLU 82 n 61 GLU 82 A ALA 83 n 62 ALA 83 A VAL 84 n 63 VAL 84 A ALA 85 n 64 ALA 85 A ALA 86 n 65 ALA 86 A TRP 87 n 66 TRP 87 A LEU 88 n 67 LEU 88 A ALA 89 n 68 ALA 89 A GLU 90 n 69 GLU 90 A LYS 91 n 70 LYS 91 A LYS 92 n 71 LYS 92 A author_defined_assembly 1 monomeric A HIS 36 A NE2 HIS 15 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B NA HEC 1_555 97.5 A HIS 36 A NE2 HIS 15 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B NB HEC 1_555 89.9 A HEC 93 B NA HEC 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B NB HEC 1_555 90.8 A HIS 36 A NE2 HIS 15 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B NC HEC 1_555 86.9 A HEC 93 B NA HEC 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B NC HEC 1_555 173.9 A HEC 93 B NB HEC 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B NC HEC 1_555 93.4 A HIS 36 A NE2 HIS 15 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B ND HEC 1_555 88.7 A HEC 93 B NA HEC 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B ND HEC 1_555 88.1 A HEC 93 B NB HEC 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B ND HEC 1_555 178.2 A HEC 93 B NC HEC 1_555 A HEC 93 B FE HEC 1_555 A HEC 93 B ND HEC 1_555 87.8 A HIS 36 A NE2 HIS 15 1_555 A HEC 93 B FE HEC 1_555 A MET 71 A SD MET 50 1_555 172.3 A HEC 93 B NA HEC 1_555 A HEC 93 B FE HEC 1_555 A MET 71 A SD MET 50 1_555 81.6 A HEC 93 B NB HEC 1_555 A HEC 93 B FE HEC 1_555 A MET 71 A SD MET 50 1_555 97.7 A HEC 93 B NC HEC 1_555 A HEC 93 B FE HEC 1_555 A MET 71 A SD MET 50 1_555 93.4 A HEC 93 B ND HEC 1_555 A HEC 93 B FE HEC 1_555 A MET 71 A SD MET 50 1_555 83.6 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A LYS 31 -161.62 -43.08 1 A SER 34 -39.76 -37.84 1 A ALA 43 -165.12 -82.34 1 A GLN 68 175.33 130.03 NMR Solution Structure of Oxidized Cytochrome c-553 from Bacillus pasteurii 1 N N 2 N N A ASP 23 A ASP 2 HELX_P A GLN 30 A GLN 9 1 1 8 A CYS 32 A CYS 11 HELX_P A GLY 37 A GLY 16 1 2 6 A LYS 50 A LYS 29 HELX_P A TYR 55 A TYR 34 1 3 6 A SER 56 A SER 35 HELX_P A GLY 67 A GLY 46 1 4 12 A GLY 78 A GLY 57 HELX_P A LYS 91 A LYS 70 1 5 14 covale 1.803 none A CYS 32 A SG CYS 11 1_555 A HEC 93 B CAB HEC 1_555 covale 1.813 none A CYS 35 A SG CYS 14 1_555 A HEC 93 B CAC HEC 1_555 metalc 1.968 A HIS 36 A NE2 HIS 15 1_555 A HEC 93 B FE HEC 1_555 metalc 2.405 A MET 71 A SD MET 50 1_555 A HEC 93 B FE HEC 1_555 ELECTRON TRANSPORT C-553, HEME, CYTOCHROME, BACILLUS PASTEURII, electron transfer, ELECTRON TRANSPORT CY553_BACPA UNP 1 22 P82599 VDAEAVVQQKCISCHGGDLTGASAPAIDKAGANYSEEEILDIILNGQGGMPGGIAKGAEAEAVAAWLAEKK 22 92 1K3H 22 92 P82599 A 1 1 71 BINDING SITE FOR RESIDUE HEC A 93 A HEC 93 Software 17 A LYS 31 A LYS 10 17 1_555 A CYS 32 A CYS 11 17 1_555 A CYS 35 A CYS 14 17 1_555 A HIS 36 A HIS 15 17 1_555 A ALA 45 A ALA 24 17 1_555 A PRO 46 A PRO 25 17 1_555 A ILE 48 A ILE 27 17 1_555 A TYR 55 A TYR 34 17 1_555 A ILE 63 A ILE 42 17 1_555 A ILE 64 A ILE 43 17 1_555 A GLN 68 A GLN 47 17 1_555 A GLY 69 A GLY 48 17 1_555 A GLY 70 A GLY 49 17 1_555 A MET 71 A MET 50 17 1_555 A ILE 75 A ILE 54 17 1_555 A VAL 84 A VAL 63 17 1_555 A LEU 88 A LEU 67 17 1_555