0.013153 0.000000 0.000000 0.000000 0.013153 0.000000 0.000000 0.000000 0.006063 0.000000 0.000000 0.000000 Golan, G. Zharkov, D.O. Gilboa, R. Fernandes, A.S. Kycia, J.H. Gerchman, S.E. Rieger, R.A. Grollman, A.P. Shoham, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 76.030 76.030 164.933 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H13 O6 P 200.127 PENTANE-3,4-DIOL-5-PHOSPHATE OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N P N 394 N O N 395 N O N 396 N O N 397 N O N 398 N C N 399 N C N 400 R C N 401 N O N 402 S C N 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N N N 419 S C N 420 N C N 421 N O N 422 N C Y 423 N C Y 424 N C Y 425 N C Y 426 N C Y 427 N C Y 428 N C N 429 N O N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N N N 442 S C N 443 N C N 444 N O N 445 N C N 446 N C N 447 N C N 448 N O N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N N N 459 S C N 460 N C N 461 N O N 462 N C N 463 N O N 464 N O N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N S N 473 N O N 474 N O N 475 N O N 476 N O N 477 N N N 478 S C N 479 N C N 480 N O N 481 R C N 482 N O N 483 N C N 484 N O N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N N N 495 S C N 496 N C N 497 N O N 498 N C Y 499 N C Y 500 N C Y 501 N C Y 502 N N Y 503 N C Y 504 N C Y 505 N C Y 506 N C Y 507 N C N 508 N O N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 521 N N N 522 S C N 523 N C N 524 N O N 525 N C Y 526 N C Y 527 N C Y 528 N C Y 529 N C Y 530 N C Y 531 N C N 532 N O N 533 N O N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N H N 540 N H N 541 N H N 542 N H N 543 N H N 544 N H N 545 N N N 546 S C N 547 N C N 548 N O N 549 N C N 550 N C N 551 N C N 552 N O N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 558 N H N 559 N H N 560 N H N 561 N H N 562 N H N 563 N H N 564 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N doub N 417 N sing N 418 N sing N 419 N sing N 420 N sing Y 421 N doub Y 422 N sing Y 423 N sing N 424 N sing Y 425 N doub N 426 N sing Y 427 N doub N 428 N sing Y 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N doub N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N doub N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N doub N 464 N doub N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N doub N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N doub N 490 N sing N 491 N sing N 492 N sing N 493 N sing Y 494 N doub Y 495 N sing Y 496 N sing N 497 N sing Y 498 N doub Y 499 N sing Y 500 N sing N 501 N sing Y 502 N sing Y 503 N doub N 504 N sing Y 505 N doub N 506 N sing Y 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N doub N 518 N sing N 519 N sing N 520 N sing N 521 N sing Y 522 N doub Y 523 N sing Y 524 N sing N 525 N sing Y 526 N doub N 527 N sing Y 528 N doub N 529 N sing Y 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N doub N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing UK EMBO J. EMJODG 0897 0261-4189 21 789 800 10.1093/emboj/21.4.789 11847126 Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate. 2002 10.2210/pdb1k3w/pdb pdb_00001k3w 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100 1 CCD 2001-02-26 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.1 1.0 X26C NSLS 1.1 SYNCHROTRON NSLS BEAMLINE X26C 3958.571 5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3' 1 syn polymer 3863.531 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3' 1 syn polymer 29814.994 Endonuclease VIII 3.2.2.- 1 man polymer 65.409 ZINC ION 1 syn non-polymer 96.063 SULFATE ION 3 syn non-polymer 18.015 water 397 nat water no no (DG)(DG)(DC)(DT)(DT)(DC)(DA)(DT)(DC)(DC)(DT)(DG)(DG) GGCTTCATCCTGG B polydeoxyribonucleotide no yes (DC)(DC)(DA)(DG)(DG)(DA)(PED)(DG)(DA)(DA)(DG)(DC)(DC) CCAGGAXGAAGCC C polydeoxyribonucleotide no no PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG EEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC GSIIEKTTLSSRPFYWCPGCQH PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG EEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC GSIIEKTTLSSRPFYWCPGCQH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample nei 562 Escherichia coli 562 Escherichia coli B834(DE3) plasmid pET13a 1 3.03 60.79 VAPOR DIFFUSION, HANGING DROP 6.5 1.8M Ammonium-sulfate, 0.1M sodium-citrate pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 288K 288 -5.318 1 20 B 405 C 429 0.036 B_DT405:DA429_C 1 -2.608 -0.064 0.026 -0.276 6.266 1 19 B 406 C 428 0.486 B_DC406:DG428_C 2 4.299 0.204 -0.002 -0.186 -7.443 1 20 B 408 C 426 3.529 B_DT408:DA426_C 3 -11.369 -0.164 0.159 -0.185 4.432 1 19 B 409 C 425 2.566 B_DC409:DG425_C 4 -13.573 0.340 -0.221 -0.256 -5.417 1 19 B 410 C 424 -0.320 B_DC410:DG424_C 5 -10.856 -0.283 0.165 -0.169 -10.982 1 20 B 411 C 423 -9.421 B_DT411:DA423_C 6 -17.333 0.451 0.159 -0.415 -12.247 1 19 B 412 C 422 -0.012 B_DG412:DC422_C 7 -1.547 -0.404 -0.685 -0.278 3.134 28.800 B B 405 406 8.278 C C 429 428 3.219 4.103 -0.220 -0.431 BB_DT405DC406:DG428DA429_CC 1 -1.120 2.259 28.491 -1.763 0.198 5.192 65.667 B B 406 408 44.826 C C 428 426 7.354 44.877 -0.296 -0.617 BB_DC406DT408:DA426DG428_CC 2 5.923 -5.916 48.891 -4.772 0.827 3.006 38.241 B B 408 409 2.052 C C 426 425 2.990 1.343 0.248 0.215 BB_DT408DC409:DG425DA426_CC 3 3.202 -4.894 38.089 0.173 -0.008 3.219 35.041 B B 409 410 21.433 C C 425 424 3.494 12.631 0.069 -0.151 BB_DC409DC410:DG424DG425_CC 4 0.117 -0.198 32.752 -2.270 -0.096 3.503 40.332 B B 410 411 -10.144 C C 424 423 3.499 -6.961 -0.703 -0.192 BB_DC410DT411:DA423DG424_CC 5 -1.274 1.857 39.732 0.568 0.865 3.547 38.114 B B 411 412 -0.286 C C 423 422 3.376 -0.185 1.181 1.560 BB_DT411DG412:DC422DA423_CC 6 8.838 -13.650 37.111 2.414 -0.607 software struct_conn chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Derived calculations Refinement description Data collection Database references Derived calculations Refinement description 1 0 2002-10-04 1 1 2008-04-27 1 2 2011-07-13 1 3 2019-07-24 1 4 2024-04-03 _software.classification _software.name _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2001-10-04 REL ZN ZINC ION SO4 SULFATE ION HOH water initial MODEL OF BR-URACIL-CONTAINING DNA COMPLEXED WITH ENDONUCLEASE VIII AT 2.4A RESOLUTION Other experimental model ZN 501 4 ZN ZN 501 A SO4 551 5 SO4 SO4 551 A SO4 552 5 SO4 SO4 552 A SO4 553 5 SO4 SO4 553 A HOH 744 6 HOH HOH 744 B HOH 784 6 HOH HOH 784 B HOH 796 6 HOH HOH 796 B HOH 799 6 HOH HOH 799 B HOH 805 6 HOH HOH 805 B HOH 811 6 HOH HOH 811 B HOH 835 6 HOH HOH 835 B HOH 853 6 HOH HOH 853 B HOH 862 6 HOH HOH 862 B HOH 888 6 HOH HOH 888 B HOH 926 6 HOH HOH 926 B HOH 932 6 HOH HOH 932 B HOH 962 6 HOH HOH 962 B HOH 986 6 HOH HOH 986 B HOH 624 6 HOH HOH 624 C HOH 669 6 HOH HOH 669 C HOH 716 6 HOH HOH 716 C HOH 737 6 HOH HOH 737 C HOH 764 6 HOH HOH 764 C HOH 841 6 HOH HOH 841 C HOH 845 6 HOH HOH 845 C HOH 858 6 HOH HOH 858 C HOH 867 6 HOH HOH 867 C HOH 875 6 HOH HOH 875 C HOH 880 6 HOH HOH 880 C HOH 882 6 HOH HOH 882 C HOH 907 6 HOH HOH 907 C HOH 912 6 HOH HOH 912 C HOH 921 6 HOH HOH 921 C HOH 944 6 HOH HOH 944 C HOH 964 6 HOH HOH 964 C HOH 985 6 HOH HOH 985 C HOH 995 6 HOH HOH 995 C HOH 601 6 HOH HOH 601 A HOH 602 6 HOH HOH 602 A HOH 603 6 HOH HOH 603 A HOH 604 6 HOH HOH 604 A HOH 605 6 HOH HOH 605 A HOH 606 6 HOH HOH 606 A HOH 607 6 HOH HOH 607 A HOH 608 6 HOH HOH 608 A HOH 609 6 HOH HOH 609 A HOH 610 6 HOH HOH 610 A HOH 611 6 HOH HOH 611 A HOH 612 6 HOH HOH 612 A HOH 613 6 HOH HOH 613 A HOH 614 6 HOH HOH 614 A HOH 615 6 HOH HOH 615 A HOH 616 6 HOH HOH 616 A HOH 617 6 HOH HOH 617 A HOH 618 6 HOH HOH 618 A HOH 619 6 HOH HOH 619 A HOH 620 6 HOH HOH 620 A HOH 621 6 HOH HOH 621 A HOH 622 6 HOH HOH 622 A HOH 623 6 HOH HOH 623 A HOH 625 6 HOH HOH 625 A HOH 626 6 HOH HOH 626 A HOH 627 6 HOH HOH 627 A HOH 628 6 HOH HOH 628 A HOH 629 6 HOH HOH 629 A HOH 630 6 HOH HOH 630 A HOH 631 6 HOH HOH 631 A HOH 632 6 HOH HOH 632 A HOH 633 6 HOH HOH 633 A HOH 634 6 HOH HOH 634 A HOH 635 6 HOH HOH 635 A HOH 636 6 HOH HOH 636 A HOH 637 6 HOH HOH 637 A HOH 638 6 HOH HOH 638 A HOH 639 6 HOH HOH 639 A HOH 640 6 HOH HOH 640 A HOH 641 6 HOH HOH 641 A HOH 642 6 HOH HOH 642 A HOH 643 6 HOH HOH 643 A HOH 644 6 HOH HOH 644 A HOH 645 6 HOH HOH 645 A HOH 646 6 HOH HOH 646 A HOH 647 6 HOH HOH 647 A HOH 648 6 HOH HOH 648 A HOH 649 6 HOH HOH 649 A HOH 650 6 HOH HOH 650 A HOH 651 6 HOH HOH 651 A HOH 652 6 HOH HOH 652 A HOH 653 6 HOH HOH 653 A HOH 654 6 HOH HOH 654 A HOH 655 6 HOH HOH 655 A HOH 656 6 HOH HOH 656 A HOH 657 6 HOH HOH 657 A HOH 658 6 HOH HOH 658 A HOH 659 6 HOH HOH 659 A HOH 660 6 HOH HOH 660 A HOH 661 6 HOH HOH 661 A HOH 662 6 HOH HOH 662 A HOH 663 6 HOH HOH 663 A HOH 664 6 HOH HOH 664 A HOH 665 6 HOH HOH 665 A HOH 666 6 HOH HOH 666 A HOH 667 6 HOH HOH 667 A HOH 668 6 HOH HOH 668 A HOH 670 6 HOH HOH 670 A HOH 671 6 HOH HOH 671 A HOH 672 6 HOH HOH 672 A HOH 673 6 HOH HOH 673 A HOH 674 6 HOH HOH 674 A HOH 675 6 HOH HOH 675 A HOH 676 6 HOH HOH 676 A HOH 677 6 HOH HOH 677 A HOH 678 6 HOH HOH 678 A HOH 679 6 HOH HOH 679 A HOH 680 6 HOH HOH 680 A HOH 681 6 HOH HOH 681 A HOH 682 6 HOH HOH 682 A HOH 683 6 HOH HOH 683 A HOH 684 6 HOH HOH 684 A HOH 685 6 HOH HOH 685 A HOH 686 6 HOH HOH 686 A HOH 687 6 HOH HOH 687 A HOH 688 6 HOH HOH 688 A HOH 689 6 HOH HOH 689 A HOH 690 6 HOH HOH 690 A HOH 691 6 HOH HOH 691 A HOH 692 6 HOH HOH 692 A HOH 693 6 HOH HOH 693 A HOH 694 6 HOH HOH 694 A HOH 695 6 HOH HOH 695 A HOH 696 6 HOH HOH 696 A HOH 697 6 HOH HOH 697 A HOH 698 6 HOH HOH 698 A HOH 699 6 HOH HOH 699 A HOH 700 6 HOH HOH 700 A HOH 701 6 HOH HOH 701 A HOH 702 6 HOH HOH 702 A HOH 703 6 HOH HOH 703 A HOH 704 6 HOH HOH 704 A HOH 705 6 HOH HOH 705 A HOH 706 6 HOH HOH 706 A HOH 707 6 HOH HOH 707 A HOH 708 6 HOH HOH 708 A HOH 709 6 HOH HOH 709 A HOH 710 6 HOH HOH 710 A HOH 711 6 HOH HOH 711 A HOH 712 6 HOH HOH 712 A HOH 713 6 HOH HOH 713 A HOH 714 6 HOH HOH 714 A HOH 715 6 HOH HOH 715 A HOH 717 6 HOH HOH 717 A HOH 718 6 HOH HOH 718 A HOH 719 6 HOH HOH 719 A HOH 720 6 HOH HOH 720 A HOH 721 6 HOH HOH 721 A HOH 722 6 HOH HOH 722 A HOH 723 6 HOH HOH 723 A HOH 724 6 HOH HOH 724 A HOH 725 6 HOH HOH 725 A HOH 726 6 HOH HOH 726 A HOH 727 6 HOH HOH 727 A HOH 728 6 HOH HOH 728 A HOH 729 6 HOH HOH 729 A HOH 730 6 HOH HOH 730 A HOH 731 6 HOH HOH 731 A HOH 732 6 HOH HOH 732 A HOH 733 6 HOH HOH 733 A HOH 734 6 HOH HOH 734 A HOH 735 6 HOH HOH 735 A HOH 736 6 HOH HOH 736 A HOH 738 6 HOH HOH 738 A HOH 739 6 HOH HOH 739 A HOH 740 6 HOH HOH 740 A HOH 741 6 HOH HOH 741 A HOH 742 6 HOH HOH 742 A HOH 743 6 HOH HOH 743 A HOH 745 6 HOH HOH 745 A HOH 746 6 HOH HOH 746 A HOH 747 6 HOH HOH 747 A HOH 748 6 HOH HOH 748 A HOH 749 6 HOH HOH 749 A HOH 750 6 HOH HOH 750 A HOH 751 6 HOH HOH 751 A HOH 752 6 HOH HOH 752 A HOH 753 6 HOH HOH 753 A HOH 754 6 HOH HOH 754 A HOH 755 6 HOH HOH 755 A HOH 756 6 HOH HOH 756 A HOH 757 6 HOH HOH 757 A HOH 758 6 HOH HOH 758 A HOH 759 6 HOH HOH 759 A HOH 760 6 HOH HOH 760 A HOH 761 6 HOH HOH 761 A HOH 762 6 HOH HOH 762 A HOH 763 6 HOH HOH 763 A HOH 765 6 HOH HOH 765 A HOH 766 6 HOH HOH 766 A HOH 767 6 HOH HOH 767 A HOH 768 6 HOH HOH 768 A HOH 769 6 HOH HOH 769 A HOH 770 6 HOH HOH 770 A HOH 771 6 HOH HOH 771 A HOH 772 6 HOH HOH 772 A HOH 773 6 HOH HOH 773 A HOH 774 6 HOH HOH 774 A HOH 775 6 HOH HOH 775 A HOH 776 6 HOH HOH 776 A HOH 777 6 HOH HOH 777 A HOH 778 6 HOH HOH 778 A HOH 779 6 HOH HOH 779 A HOH 780 6 HOH HOH 780 A HOH 781 6 HOH HOH 781 A HOH 782 6 HOH HOH 782 A HOH 783 6 HOH HOH 783 A HOH 785 6 HOH HOH 785 A HOH 786 6 HOH HOH 786 A HOH 787 6 HOH HOH 787 A HOH 788 6 HOH HOH 788 A HOH 789 6 HOH HOH 789 A HOH 790 6 HOH HOH 790 A HOH 791 6 HOH HOH 791 A HOH 792 6 HOH HOH 792 A HOH 793 6 HOH HOH 793 A HOH 794 6 HOH HOH 794 A HOH 795 6 HOH HOH 795 A HOH 797 6 HOH HOH 797 A HOH 798 6 HOH HOH 798 A HOH 800 6 HOH HOH 800 A HOH 801 6 HOH HOH 801 A HOH 802 6 HOH HOH 802 A HOH 803 6 HOH HOH 803 A HOH 804 6 HOH HOH 804 A HOH 806 6 HOH HOH 806 A HOH 807 6 HOH HOH 807 A HOH 808 6 HOH HOH 808 A HOH 809 6 HOH HOH 809 A HOH 810 6 HOH HOH 810 A HOH 812 6 HOH HOH 812 A HOH 813 6 HOH HOH 813 A HOH 814 6 HOH HOH 814 A HOH 815 6 HOH HOH 815 A HOH 816 6 HOH HOH 816 A HOH 817 6 HOH HOH 817 A HOH 818 6 HOH HOH 818 A HOH 819 6 HOH HOH 819 A HOH 820 6 HOH HOH 820 A HOH 821 6 HOH HOH 821 A HOH 822 6 HOH HOH 822 A HOH 823 6 HOH HOH 823 A HOH 824 6 HOH HOH 824 A HOH 825 6 HOH HOH 825 A HOH 826 6 HOH HOH 826 A HOH 827 6 HOH HOH 827 A HOH 828 6 HOH HOH 828 A HOH 829 6 HOH HOH 829 A HOH 830 6 HOH HOH 830 A HOH 831 6 HOH HOH 831 A HOH 832 6 HOH HOH 832 A HOH 833 6 HOH HOH 833 A HOH 834 6 HOH HOH 834 A HOH 836 6 HOH HOH 836 A HOH 837 6 HOH HOH 837 A HOH 838 6 HOH HOH 838 A HOH 839 6 HOH HOH 839 A HOH 840 6 HOH HOH 840 A HOH 842 6 HOH HOH 842 A HOH 843 6 HOH HOH 843 A HOH 844 6 HOH HOH 844 A HOH 846 6 HOH HOH 846 A HOH 847 6 HOH HOH 847 A HOH 848 6 HOH HOH 848 A HOH 849 6 HOH HOH 849 A HOH 850 6 HOH HOH 850 A HOH 851 6 HOH HOH 851 A HOH 852 6 HOH HOH 852 A HOH 854 6 HOH HOH 854 A HOH 855 6 HOH HOH 855 A HOH 856 6 HOH HOH 856 A HOH 857 6 HOH HOH 857 A HOH 859 6 HOH HOH 859 A HOH 860 6 HOH HOH 860 A HOH 861 6 HOH HOH 861 A HOH 863 6 HOH HOH 863 A HOH 864 6 HOH HOH 864 A HOH 865 6 HOH HOH 865 A HOH 866 6 HOH HOH 866 A HOH 868 6 HOH HOH 868 A HOH 869 6 HOH HOH 869 A HOH 870 6 HOH HOH 870 A HOH 871 6 HOH HOH 871 A HOH 872 6 HOH HOH 872 A HOH 873 6 HOH HOH 873 A HOH 874 6 HOH HOH 874 A HOH 876 6 HOH HOH 876 A HOH 877 6 HOH HOH 877 A HOH 878 6 HOH HOH 878 A HOH 879 6 HOH HOH 879 A HOH 881 6 HOH HOH 881 A HOH 884 6 HOH HOH 884 A HOH 885 6 HOH HOH 885 A HOH 886 6 HOH HOH 886 A HOH 887 6 HOH HOH 887 A HOH 889 6 HOH HOH 889 A HOH 890 6 HOH HOH 890 A HOH 891 6 HOH HOH 891 A HOH 892 6 HOH HOH 892 A HOH 893 6 HOH HOH 893 A HOH 894 6 HOH HOH 894 A HOH 895 6 HOH HOH 895 A HOH 896 6 HOH HOH 896 A HOH 897 6 HOH HOH 897 A HOH 898 6 HOH HOH 898 A HOH 899 6 HOH HOH 899 A HOH 900 6 HOH HOH 900 A HOH 901 6 HOH HOH 901 A HOH 902 6 HOH HOH 902 A HOH 903 6 HOH HOH 903 A HOH 904 6 HOH HOH 904 A HOH 905 6 HOH HOH 905 A HOH 906 6 HOH HOH 906 A HOH 908 6 HOH HOH 908 A HOH 909 6 HOH HOH 909 A HOH 910 6 HOH HOH 910 A HOH 911 6 HOH HOH 911 A HOH 913 6 HOH HOH 913 A HOH 914 6 HOH HOH 914 A HOH 915 6 HOH HOH 915 A HOH 916 6 HOH HOH 916 A HOH 917 6 HOH HOH 917 A HOH 918 6 HOH HOH 918 A HOH 919 6 HOH HOH 919 A HOH 920 6 HOH HOH 920 A HOH 922 6 HOH HOH 922 A HOH 923 6 HOH HOH 923 A HOH 924 6 HOH HOH 924 A HOH 925 6 HOH HOH 925 A HOH 927 6 HOH HOH 927 A HOH 928 6 HOH HOH 928 A HOH 929 6 HOH HOH 929 A HOH 930 6 HOH HOH 930 A HOH 931 6 HOH HOH 931 A HOH 933 6 HOH HOH 933 A HOH 934 6 HOH HOH 934 A HOH 935 6 HOH HOH 935 A HOH 936 6 HOH HOH 936 A HOH 937 6 HOH HOH 937 A HOH 938 6 HOH HOH 938 A HOH 939 6 HOH HOH 939 A HOH 940 6 HOH HOH 940 A HOH 941 6 HOH HOH 941 A HOH 942 6 HOH HOH 942 A HOH 943 6 HOH HOH 943 A HOH 945 6 HOH HOH 945 A HOH 946 6 HOH HOH 946 A HOH 947 6 HOH HOH 947 A HOH 948 6 HOH HOH 948 A HOH 949 6 HOH HOH 949 A HOH 950 6 HOH HOH 950 A HOH 951 6 HOH HOH 951 A HOH 952 6 HOH HOH 952 A HOH 953 6 HOH HOH 953 A HOH 954 6 HOH HOH 954 A HOH 955 6 HOH HOH 955 A HOH 956 6 HOH HOH 956 A HOH 957 6 HOH HOH 957 A HOH 958 6 HOH HOH 958 A HOH 959 6 HOH HOH 959 A HOH 960 6 HOH HOH 960 A HOH 961 6 HOH HOH 961 A HOH 963 6 HOH HOH 963 A HOH 965 6 HOH HOH 965 A HOH 966 6 HOH HOH 966 A HOH 967 6 HOH HOH 967 A HOH 968 6 HOH HOH 968 A HOH 969 6 HOH HOH 969 A HOH 970 6 HOH HOH 970 A HOH 971 6 HOH HOH 971 A HOH 972 6 HOH HOH 972 A HOH 973 6 HOH HOH 973 A HOH 974 6 HOH HOH 974 A HOH 975 6 HOH HOH 975 A HOH 976 6 HOH HOH 976 A HOH 979 6 HOH HOH 979 A HOH 981 6 HOH HOH 981 A HOH 982 6 HOH HOH 982 A HOH 983 6 HOH HOH 983 A HOH 987 6 HOH HOH 987 A HOH 988 6 HOH HOH 988 A HOH 989 6 HOH HOH 989 A HOH 990 6 HOH HOH 990 A HOH 991 6 HOH HOH 991 A HOH 996 6 HOH HOH 996 A HOH 997 6 HOH HOH 997 A HOH 999 6 HOH HOH 999 A HOH 1001 6 HOH HOH 1001 A HOH 1003 6 HOH HOH 1003 A HOH 1004 6 HOH HOH 1004 A HOH 1007 6 HOH HOH 1007 A HOH 1008 6 HOH HOH 1008 A HOH 1009 6 HOH HOH 1009 A HOH 1010 6 HOH HOH 1010 A n 1 401 B n 2 402 B n 3 403 B n 4 404 B T 405 n 5 DT 405 B C 406 n 6 DC 406 B A 407 n 7 DA 407 B T 408 n 8 DT 408 B C 409 n 9 DC 409 B C 410 n 10 DC 410 B T 411 n 11 DT 411 B G 412 n 12 DG 412 B n 13 413 B n 1 421 C C 422 n 2 DC 422 C A 423 n 3 DA 423 C G 424 n 4 DG 424 C G 425 n 5 DG 425 C A 426 n 6 DA 426 C PED 427 n 7 PED 427 C G 428 n 8 DG 428 C A 429 n 9 DA 429 C A 430 n 10 DA 430 C G 431 n 11 DG 431 C C 432 n 12 DC 432 C n 13 433 C PRO 1 n 1 PRO 1 A GLU 2 n 2 GLU 2 A GLY 3 n 3 GLY 3 A PRO 4 n 4 PRO 4 A GLU 5 n 5 GLU 5 A ILE 6 n 6 ILE 6 A ARG 7 n 7 ARG 7 A ARG 8 n 8 ARG 8 A ALA 9 n 9 ALA 9 A ALA 10 n 10 ALA 10 A ASP 11 n 11 ASP 11 A ASN 12 n 12 ASN 12 A LEU 13 n 13 LEU 13 A GLU 14 n 14 GLU 14 A ALA 15 n 15 ALA 15 A ALA 16 n 16 ALA 16 A ILE 17 n 17 ILE 17 A LYS 18 n 18 LYS 18 A GLY 19 n 19 GLY 19 A LYS 20 n 20 LYS 20 A PRO 21 n 21 PRO 21 A LEU 22 n 22 LEU 22 A THR 23 n 23 THR 23 A ASP 24 n 24 ASP 24 A VAL 25 n 25 VAL 25 A TRP 26 n 26 TRP 26 A PHE 27 n 27 PHE 27 A ALA 28 n 28 ALA 28 A PHE 29 n 29 PHE 29 A PRO 30 n 30 PRO 30 A GLN 31 n 31 GLN 31 A LEU 32 n 32 LEU 32 A LYS 33 n 33 LYS 33 A THR 34 n 34 THR 34 A TYR 35 n 35 TYR 35 A GLN 36 n 36 GLN 36 A SER 37 n 37 SER 37 A GLN 38 n 38 GLN 38 A LEU 39 n 39 LEU 39 A ILE 40 n 40 ILE 40 A GLY 41 n 41 GLY 41 A GLN 42 n 42 GLN 42 A HIS 43 n 43 HIS 43 A VAL 44 n 44 VAL 44 A THR 45 n 45 THR 45 A HIS 46 n 46 HIS 46 A VAL 47 n 47 VAL 47 A GLU 48 n 48 GLU 48 A THR 49 n 49 THR 49 A ARG 50 n 50 ARG 50 A GLY 51 n 51 GLY 51 A LYS 52 n 52 LYS 52 A ALA 53 n 53 ALA 53 A LEU 54 n 54 LEU 54 A LEU 55 n 55 LEU 55 A THR 56 n 56 THR 56 A HIS 57 n 57 HIS 57 A PHE 58 n 58 PHE 58 A SER 59 n 59 SER 59 A ASN 60 n 60 ASN 60 A ASP 61 n 61 ASP 61 A LEU 62 n 62 LEU 62 A THR 63 n 63 THR 63 A LEU 64 n 64 LEU 64 A TYR 65 n 65 TYR 65 A SER 66 n 66 SER 66 A HIS 67 n 67 HIS 67 A ASN 68 n 68 ASN 68 A GLN 69 n 69 GLN 69 A LEU 70 n 70 LEU 70 A TYR 71 n 71 TYR 71 A GLY 72 n 72 GLY 72 A VAL 73 n 73 VAL 73 A TRP 74 n 74 TRP 74 A ARG 75 n 75 ARG 75 A VAL 76 n 76 VAL 76 A VAL 77 n 77 VAL 77 A ASP 78 n 78 ASP 78 A THR 79 n 79 THR 79 A GLY 80 n 80 GLY 80 A GLU 81 n 81 GLU 81 A GLU 82 n 82 GLU 82 A PRO 83 n 83 PRO 83 A GLN 84 n 84 GLN 84 A THR 85 n 85 THR 85 A THR 86 n 86 THR 86 A ARG 87 n 87 ARG 87 A VAL 88 n 88 VAL 88 A LEU 89 n 89 LEU 89 A ARG 90 n 90 ARG 90 A VAL 91 n 91 VAL 91 A LYS 92 n 92 LYS 92 A LEU 93 n 93 LEU 93 A GLN 94 n 94 GLN 94 A THR 95 n 95 THR 95 A ALA 96 n 96 ALA 96 A ASP 97 n 97 ASP 97 A LYS 98 n 98 LYS 98 A THR 99 n 99 THR 99 A ILE 100 n 100 ILE 100 A LEU 101 n 101 LEU 101 A LEU 102 n 102 LEU 102 A TYR 103 n 103 TYR 103 A SER 104 n 104 SER 104 A ALA 105 n 105 ALA 105 A SER 106 n 106 SER 106 A ASP 107 n 107 ASP 107 A ILE 108 n 108 ILE 108 A GLU 109 n 109 GLU 109 A MET 110 n 110 MET 110 A LEU 111 n 111 LEU 111 A ARG 112 n 112 ARG 112 A PRO 113 n 113 PRO 113 A GLU 114 n 114 GLU 114 A GLN 115 n 115 GLN 115 A LEU 116 n 116 LEU 116 A THR 117 n 117 THR 117 A THR 118 n 118 THR 118 A HIS 119 n 119 HIS 119 A PRO 120 n 120 PRO 120 A PHE 121 n 121 PHE 121 A LEU 122 n 122 LEU 122 A GLN 123 n 123 GLN 123 A ARG 124 n 124 ARG 124 A VAL 125 n 125 VAL 125 A GLY 126 n 126 GLY 126 A PRO 127 n 127 PRO 127 A ASP 128 n 128 ASP 128 A VAL 129 n 129 VAL 129 A LEU 130 n 130 LEU 130 A ASP 131 n 131 ASP 131 A PRO 132 n 132 PRO 132 A ASN 133 n 133 ASN 133 A LEU 134 n 134 LEU 134 A THR 135 n 135 THR 135 A PRO 136 n 136 PRO 136 A GLU 137 n 137 GLU 137 A VAL 138 n 138 VAL 138 A VAL 139 n 139 VAL 139 A LYS 140 n 140 LYS 140 A GLU 141 n 141 GLU 141 A ARG 142 n 142 ARG 142 A LEU 143 n 143 LEU 143 A LEU 144 n 144 LEU 144 A SER 145 n 145 SER 145 A PRO 146 n 146 PRO 146 A ARG 147 n 147 ARG 147 A PHE 148 n 148 PHE 148 A ARG 149 n 149 ARG 149 A ASN 150 n 150 ASN 150 A ARG 151 n 151 ARG 151 A GLN 152 n 152 GLN 152 A PHE 153 n 153 PHE 153 A ALA 154 n 154 ALA 154 A GLY 155 n 155 GLY 155 A LEU 156 n 156 LEU 156 A LEU 157 n 157 LEU 157 A LEU 158 n 158 LEU 158 A ASP 159 n 159 ASP 159 A GLN 160 n 160 GLN 160 A ALA 161 n 161 ALA 161 A PHE 162 n 162 PHE 162 A LEU 163 n 163 LEU 163 A ALA 164 n 164 ALA 164 A GLY 165 n 165 GLY 165 A LEU 166 n 166 LEU 166 A GLY 167 n 167 GLY 167 A ASN 168 n 168 ASN 168 A TYR 169 n 169 TYR 169 A LEU 170 n 170 LEU 170 A ARG 171 n 171 ARG 171 A VAL 172 n 172 VAL 172 A GLU 173 n 173 GLU 173 A ILE 174 n 174 ILE 174 A LEU 175 n 175 LEU 175 A TRP 176 n 176 TRP 176 A GLN 177 n 177 GLN 177 A VAL 178 n 178 VAL 178 A GLY 179 n 179 GLY 179 A LEU 180 n 180 LEU 180 A THR 181 n 181 THR 181 A GLY 182 n 182 GLY 182 A ASN 183 n 183 ASN 183 A HIS 184 n 184 HIS 184 A LYS 185 n 185 LYS 185 A ALA 186 n 186 ALA 186 A LYS 187 n 187 LYS 187 A ASP 188 n 188 ASP 188 A LEU 189 n 189 LEU 189 A ASN 190 n 190 ASN 190 A ALA 191 n 191 ALA 191 A ALA 192 n 192 ALA 192 A GLN 193 n 193 GLN 193 A LEU 194 n 194 LEU 194 A ASP 195 n 195 ASP 195 A ALA 196 n 196 ALA 196 A LEU 197 n 197 LEU 197 A ALA 198 n 198 ALA 198 A HIS 199 n 199 HIS 199 A ALA 200 n 200 ALA 200 A LEU 201 n 201 LEU 201 A LEU 202 n 202 LEU 202 A GLU 203 n 203 GLU 203 A ILE 204 n 204 ILE 204 A PRO 205 n 205 PRO 205 A ARG 206 n 206 ARG 206 A PHE 207 n 207 PHE 207 A SER 208 n 208 SER 208 A TYR 209 n 209 TYR 209 A ALA 210 n 210 ALA 210 A THR 211 n 211 THR 211 A ARG 212 n 212 ARG 212 A GLY 213 n 213 GLY 213 A GLN 214 n 214 GLN 214 A n 215 215 A n 216 216 A n 217 217 A n 218 218 A n 219 219 A n 220 220 A n 221 221 A n 222 222 A ALA 223 n 223 ALA 223 A LEU 224 n 224 LEU 224 A PHE 225 n 225 PHE 225 A ARG 226 n 226 ARG 226 A PHE 227 n 227 PHE 227 A LYS 228 n 228 LYS 228 A VAL 229 n 229 VAL 229 A PHE 230 n 230 PHE 230 A HIS 231 n 231 HIS 231 A ARG 232 n 232 ARG 232 A ASP 233 n 233 ASP 233 A GLY 234 n 234 GLY 234 A GLU 235 n 235 GLU 235 A PRO 236 n 236 PRO 236 A CYS 237 n 237 CYS 237 A GLU 238 n 238 GLU 238 A ARG 239 n 239 ARG 239 A CYS 240 n 240 CYS 240 A GLY 241 n 241 GLY 241 A SER 242 n 242 SER 242 A ILE 243 n 243 ILE 243 A ILE 244 n 244 ILE 244 A GLU 245 n 245 GLU 245 A LYS 246 n 246 LYS 246 A THR 247 n 247 THR 247 A THR 248 n 248 THR 248 A LEU 249 n 249 LEU 249 A SER 250 n 250 SER 250 A SER 251 n 251 SER 251 A ARG 252 n 252 ARG 252 A PRO 253 n 253 PRO 253 A PHE 254 n 254 PHE 254 A TYR 255 n 255 TYR 255 A TRP 256 n 256 TRP 256 A CYS 257 n 257 CYS 257 A PRO 258 n 258 PRO 258 A GLY 259 n 259 GLY 259 A CYS 260 n 260 CYS 260 A GLN 261 n 261 GLN 261 A HIS 262 n 262 HIS 262 A 0.1592000 0.1646000 0.1989000 0.2026000 7422 8521 11.2 11.2 66079 author_defined_assembly 3 trimeric A CYS 237 C SG CYS 237 1_555 A ZN 501 D ZN ZN 1_555 A CYS 240 C SG CYS 240 1_555 116.1 A CYS 237 C SG CYS 237 1_555 A ZN 501 D ZN ZN 1_555 A CYS 257 C SG CYS 257 1_555 105.9 A CYS 240 C SG CYS 240 1_555 A ZN 501 D ZN ZN 1_555 A CYS 257 C SG CYS 257 1_555 97.2 A CYS 237 C SG CYS 237 1_555 A ZN 501 D ZN ZN 1_555 A CYS 260 C SG CYS 260 1_555 104.9 A CYS 240 C SG CYS 240 1_555 A ZN 501 D ZN ZN 1_555 A CYS 260 C SG CYS 260 1_555 119.9 A CYS 257 C SG CYS 257 1_555 A ZN 501 D ZN ZN 1_555 A CYS 260 C SG CYS 260 1_555 111.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TRP 26 C N TRP 26 A O LYS 92 C O LYS 92 A N LEU 93 C N LEU 93 A O ILE 100 C O ILE 100 A O TYR 103 C O TYR 103 A N VAL 73 C N VAL 73 A N GLU 48 C N GLU 48 A O LEU 55 C O LEU 55 A N LEU 54 C N LEU 54 A O SER 66 C O SER 66 A N THR 63 C N THR 63 A O LEU 111 C O LEU 111 A N THR 247 C N THR 247 A O PHE 254 C O PHE 254 1 A HOH 846 J HOH 1 A HOH 849 J HOH 1 A HOH 975 J HOH 1 B DG 401 A DG 1 1 Y 1 B DG 402 A DG 2 1 Y 1 B DC 403 A DC 3 1 Y 1 B DT 404 A DT 4 1 Y 1 B DG 413 A DG 13 1 Y 1 C DC 421 B DC 1 1 Y 1 C DC 433 B DC 13 1 Y 1 A VAL 215 C VAL 215 1 Y 1 A ASP 216 C ASP 216 1 Y 1 A GLU 217 C GLU 217 1 Y 1 A ASN 218 C ASN 218 1 Y 1 A LYS 219 C LYS 219 1 Y 1 A HIS 220 C HIS 220 1 Y 1 A HIS 221 C HIS 221 1 Y 1 A GLY 222 C GLY 222 1 Y 1 -5.05 0.60 127.20 122.15 B B B C2 N3 C4 DT DT DT 405 405 405 N 1 4.18 0.60 118.00 122.18 B B B C4 C5 C6 DT DT DT 405 405 405 N 1 -3.80 0.60 123.70 119.90 B B B C5 C6 N1 DT DT DT 405 405 405 N 1 5.78 0.60 119.00 124.78 B B B C4 C5 C7 DT DT DT 405 405 405 N 1 -9.87 0.60 122.90 113.03 B B B C6 C5 C7 DT DT DT 405 405 405 N 1 -4.49 0.70 119.20 114.71 B B B N1 C2 N3 DC DC DC 406 406 406 N 1 6.75 0.50 119.90 126.65 B B B C2 N3 C4 DC DC DC 406 406 406 N 1 -4.49 0.40 121.90 117.41 B B B N3 C4 C5 DC DC DC 406 406 406 N 1 6.39 0.70 121.90 128.29 B B B N3 C2 O2 DC DC DC 406 406 406 N 1 4.37 0.70 118.00 122.37 B B B N3 C4 N4 DC DC DC 406 406 406 N 1 4.76 0.30 108.30 113.06 B B B O4' C1' N9 DA DA DA 407 407 407 N 1 3.02 0.50 117.00 120.02 B B B C4 C5 C6 DA DA DA 407 407 407 N 1 3.17 0.50 103.90 107.07 B B B C5 N7 C8 DA DA DA 407 407 407 N 1 -4.85 0.70 108.00 103.15 B B B O4' C1' N1 DT DT DT 408 408 408 N 1 -4.43 0.60 127.20 122.77 B B B C2 N3 C4 DT DT DT 408 408 408 N 1 -4.52 0.60 122.30 117.78 B B B N3 C2 O2 DT DT DT 408 408 408 N 1 7.28 1.20 119.70 126.98 B B B C3' O3' P DT DT DC 408 408 409 Y 1 -4.83 0.70 108.00 103.17 B B B O4' C1' N1 DC DC DC 409 409 409 N 1 -5.08 0.70 119.20 114.12 B B B N1 C2 N3 DC DC DC 409 409 409 N 1 8.83 0.50 119.90 128.73 B B B C2 N3 C4 DC DC DC 409 409 409 N 1 -7.02 0.40 121.90 114.88 B B B N3 C4 C5 DC DC DC 409 409 409 N 1 -3.78 0.60 118.90 115.12 B B B N1 C2 O2 DC DC DC 409 409 409 N 1 8.84 0.70 121.90 130.74 B B B N3 C2 O2 DC DC DC 409 409 409 N 1 6.00 0.70 118.00 124.00 B B B N3 C4 N4 DC DC DC 409 409 409 N 1 7.61 1.10 110.50 118.11 B B B O3' P OP2 DC DC DC 409 410 410 Y 1 2.66 0.30 108.30 110.96 B B B O4' C1' N1 DC DC DC 410 410 410 N 1 -5.87 0.70 119.20 113.33 B B B N1 C2 N3 DC DC DC 410 410 410 N 1 7.92 0.50 119.90 127.82 B B B C2 N3 C4 DC DC DC 410 410 410 N 1 -4.56 0.40 121.90 117.34 B B B N3 C4 C5 DC DC DC 410 410 410 N 1 5.83 0.70 118.00 123.83 B B B N3 C4 N4 DC DC DC 410 410 410 N 1 9.45 1.20 119.70 129.15 B B B C3' O3' P DC DC DT 410 410 411 Y 1 4.93 0.30 108.30 113.23 B B B O4' C1' N1 DT DT DT 411 411 411 N 1 4.79 0.60 114.60 119.39 B B B N1 C2 N3 DT DT DT 411 411 411 N 1 -8.06 0.60 127.20 119.14 B B B C2 N3 C4 DT DT DT 411 411 411 N 1 5.42 0.60 118.00 123.42 B B B C4 C5 C6 DT DT DT 411 411 411 N 1 -4.94 0.60 123.70 118.76 B B B C5 C6 N1 DT DT DT 411 411 411 N 1 -4.08 0.60 122.30 118.22 B B B N3 C2 O2 DT DT DT 411 411 411 N 1 -7.33 0.60 122.90 115.57 B B B C6 C5 C7 DT DT DT 411 411 411 N 1 17.76 1.20 119.70 137.46 B B B C3' O3' P DT DT DG 411 411 412 Y 1 -7.70 0.60 125.10 117.40 B B B C6 N1 C2 DG DG DG 412 412 412 N 1 8.66 0.50 111.90 120.56 B B B C2 N3 C4 DG DG DG 412 412 412 N 1 -10.21 0.50 128.60 118.39 B B B N3 C4 C5 DG DG DG 412 412 412 N 1 5.66 0.50 111.50 117.16 B B B C5 C6 N1 DG DG DG 412 412 412 N 1 -5.14 0.50 104.30 99.16 B B B C5 N7 C8 DG DG DG 412 412 412 N 1 9.82 0.50 113.10 122.92 B B B N7 C8 N9 DG DG DG 412 412 412 N 1 -7.69 0.40 106.40 98.71 B B B C8 N9 C4 DG DG DG 412 412 412 N 1 3.52 0.40 105.40 108.92 B B B N9 C4 C5 DG DG DG 412 412 412 N 1 6.69 0.60 126.00 132.69 B B B N3 C4 N9 DG DG DG 412 412 412 N 1 -8.85 0.40 104.50 95.65 C C C O4' C4' C3' DC DC DC 422 422 422 N 1 -7.56 1.00 110.10 102.54 C C C C1' O4' C4' DC DC DC 422 422 422 N 1 -5.78 0.70 102.20 96.42 C C C C4' C3' C2' DC DC DC 422 422 422 N 1 1.84 0.30 108.30 110.14 C C C O4' C1' N1 DC DC DC 422 422 422 N 1 7.75 0.50 119.90 127.65 C C C C2 N3 C4 DC DC DC 422 422 422 N 1 -6.95 0.40 121.90 114.95 C C C N3 C4 C5 DC DC DC 422 422 422 N 1 6.22 0.70 121.90 128.12 C C C N3 C2 O2 DC DC DC 422 422 422 N 1 4.24 0.70 120.20 124.44 C C C C5 C4 N4 DC DC DC 422 422 422 N 1 9.11 1.20 120.80 129.91 C C C C6 N1 C1' DC DC DC 422 422 422 N 1 -7.34 1.10 118.80 111.46 C C C C2 N1 C1' DC DC DC 422 422 422 N 1 -4.66 0.70 102.20 97.54 C C C C4' C3' C2' DA DA DA 423 423 423 N 1 11.67 0.30 108.30 119.97 C C C O4' C1' N9 DA DA DA 423 423 423 N 1 4.04 0.60 118.60 122.64 C C C C6 N1 C2 DA DA DA 423 423 423 N 1 -3.48 0.50 117.70 114.22 C C C C5 C6 N1 DA DA DA 423 423 423 N 1 13.47 1.20 119.70 133.17 C C C C3' O3' P DA DA DG 423 423 424 Y 1 -6.03 0.60 125.10 119.07 C C C C6 N1 C2 DG DG DG 424 424 424 N 1 6.46 0.50 111.90 118.36 C C C C2 N3 C4 DG DG DG 424 424 424 N 1 -7.26 0.50 128.60 121.34 C C C N3 C4 C5 DG DG DG 424 424 424 N 1 5.31 0.50 111.50 116.81 C C C C5 C6 N1 DG DG DG 424 424 424 N 1 -5.66 0.50 104.30 98.64 C C C C5 N7 C8 DG DG DG 424 424 424 N 1 8.78 0.50 113.10 121.88 C C C N7 C8 N9 DG DG DG 424 424 424 N 1 -5.74 0.40 106.40 100.66 C C C C8 N9 C4 DG DG DG 424 424 424 N 1 5.82 0.60 126.00 131.82 C C C N3 C4 N9 DG DG DG 424 424 424 N 1 -5.74 0.60 128.60 122.86 C C C C5 C6 O6 DG DG DG 424 424 424 N 1 9.37 1.30 127.00 136.37 C C C C8 N9 C1' DG DG DG 424 424 424 N 1 -5.48 0.60 125.10 119.62 C C C C6 N1 C2 DG DG DG 425 425 425 N 1 6.96 0.50 111.90 118.86 C C C C2 N3 C4 DG DG DG 425 425 425 N 1 -7.65 0.50 128.60 120.95 C C C N3 C4 C5 DG DG DG 425 425 425 N 1 4.86 0.50 111.50 116.36 C C C C5 C6 N1 DG DG DG 425 425 425 N 1 -5.40 0.50 104.30 98.90 C C C C5 N7 C8 DG DG DG 425 425 425 N 1 9.02 0.50 113.10 122.12 C C C N7 C8 N9 DG DG DG 425 425 425 N 1 -6.21 0.40 106.40 100.19 C C C C8 N9 C4 DG DG DG 425 425 425 N 1 5.29 0.60 126.00 131.29 C C C N3 C4 N9 DG DG DG 425 425 425 N 1 -4.69 0.60 128.60 123.91 C C C C5 C6 O6 DG DG DG 425 425 425 N 1 -3.37 0.40 104.50 101.13 C C C O4' C4' C3' DA DA DA 426 426 426 N 1 3.28 0.50 117.00 120.28 C C C C4 C5 C6 DA DA DA 426 426 426 N 1 -3.50 0.50 117.70 114.20 C C C C5 C6 N1 DA DA DA 426 426 426 N 1 -5.40 0.70 108.00 102.60 C C C O4' C1' N9 DG DG DG 428 428 428 N 1 -4.88 0.60 125.10 120.22 C C C C6 N1 C2 DG DG DG 428 428 428 N 1 4.39 0.50 111.90 116.29 C C C C2 N3 C4 DG DG DG 428 428 428 N 1 -5.71 0.50 128.60 122.89 C C C N3 C4 C5 DG DG DG 428 428 428 N 1 4.77 0.50 111.50 116.27 C C C C5 C6 N1 DG DG DG 428 428 428 N 1 -4.39 0.50 104.30 99.91 C C C C5 N7 C8 DG DG DG 428 428 428 N 1 6.51 0.50 113.10 119.61 C C C N7 C8 N9 DG DG DG 428 428 428 N 1 -4.44 0.40 106.40 101.96 C C C C8 N9 C4 DG DG DG 428 428 428 N 1 3.72 0.60 126.00 129.72 C C C N3 C4 N9 DG DG DG 428 428 428 N 1 -3.97 0.60 128.60 124.63 C C C C5 C6 O6 DG DG DG 428 428 428 N 1 -6.05 1.00 110.10 104.05 C C C C1' O4' C4' DA DA DA 429 429 429 N 1 -6.05 0.80 105.90 99.85 C C C O4' C1' C2' DA DA DA 429 429 429 N 1 -6.19 0.70 108.00 101.81 C C C O4' C1' N9 DA DA DA 429 429 429 N 1 7.55 0.60 118.60 126.15 C C C C6 N1 C2 DA DA DA 429 429 429 N 1 -7.27 0.50 129.30 122.03 C C C N1 C2 N3 DA DA DA 429 429 429 N 1 -3.87 0.50 117.70 113.83 C C C C5 C6 N1 DA DA DA 429 429 429 N 1 6.35 0.30 108.30 114.65 C C C O4' C1' N9 DA DA DA 430 430 430 N 1 3.12 0.50 106.80 109.92 C C C O4' C1' C2' DG DG DG 431 431 431 N 1 -6.89 0.60 125.10 118.21 C C C C6 N1 C2 DG DG DG 431 431 431 N 1 6.39 0.50 111.90 118.29 C C C C2 N3 C4 DG DG DG 431 431 431 N 1 -7.51 0.50 128.60 121.09 C C C N3 C4 C5 DG DG DG 431 431 431 N 1 5.44 0.50 111.50 116.94 C C C C5 C6 N1 DG DG DG 431 431 431 N 1 -6.29 0.50 104.30 98.01 C C C C5 N7 C8 DG DG DG 431 431 431 N 1 9.63 0.50 113.10 122.73 C C C N7 C8 N9 DG DG DG 431 431 431 N 1 -6.36 0.40 106.40 100.04 C C C C8 N9 C4 DG DG DG 431 431 431 N 1 5.86 0.60 126.00 131.86 C C C N3 C4 N9 DG DG DG 431 431 431 N 1 -5.63 0.60 128.60 122.97 C C C C5 C6 O6 DG DG DG 431 431 431 N 1 9.46 1.30 127.00 136.46 C C C C8 N9 C1' DG DG DG 431 431 431 N 1 32.02 1.10 110.50 142.52 C C C O3' P OP1 DG DC DC 431 432 432 Y 1 -4.51 0.70 119.20 114.69 C C C N1 C2 N3 DC DC DC 432 432 432 N 1 6.78 0.50 119.90 126.68 C C C C2 N3 C4 DC DC DC 432 432 432 N 1 -4.47 0.40 121.90 117.43 C C C N3 C4 C5 DC DC DC 432 432 432 N 1 6.37 0.70 121.90 128.27 C C C N3 C2 O2 DC DC DC 432 432 432 N 1 4.40 0.70 118.00 122.40 C C C N3 C4 N4 DC DC DC 432 432 432 N 1 11.69 1.70 113.60 125.29 A A A CA CB CG HIS HIS HIS 46 46 46 B B N 1 4.98 0.60 121.00 125.98 A A A CB CG CD1 TYR TYR TYR 65 65 65 N 1 -3.95 0.60 121.00 117.05 A A A CB CG CD2 TYR TYR TYR 71 71 71 N 1 8.45 1.40 123.60 132.05 A A A CD NE CZ ARG ARG ARG 124 124 124 A A A N 1 4.18 0.50 120.30 124.48 A A A NE CZ NH1 ARG ARG ARG 142 142 142 N 1 -3.11 0.50 120.30 117.19 A A A NE CZ NH2 ARG ARG ARG 142 142 142 N 1 5.20 0.60 121.00 126.20 A A A CB CG CD1 TYR TYR TYR 169 169 169 N 1 6.34 0.80 121.30 127.64 A A A CG CD1 CE1 TYR TYR TYR 169 169 169 N 1 -10.91 1.60 122.70 111.79 A A A O C N ASN ASN HIS 183 183 184 Y 1 3.34 0.50 120.30 123.64 A A A NE CZ NH2 ARG ARG ARG 212 212 212 B B B N 1 3.96 0.50 120.30 124.26 A A A NE CZ NH1 ARG ARG ARG 239 239 239 N 1 -6.02 0.50 120.30 114.28 A A A NE CZ NH2 ARG ARG ARG 239 239 239 N 1 3.45 0.50 120.30 123.75 A A A NE CZ NH1 ARG ARG ARG 252 252 252 N 1 -4.18 0.50 120.30 116.12 A A A NE CZ NH2 ARG ARG ARG 252 252 252 N 1 B B C2 N3 DT DT 405 405 0.061 0.008 1.373 1.434 N 1 B B C5 C7 DT DT 405 405 0.100 0.006 1.496 1.596 N 1 B B C2 N3 DT DT 408 408 0.055 0.008 1.373 1.428 N 1 B B C5 C7 DT DT 408 408 0.088 0.006 1.496 1.584 N 1 B B C2 N3 DT DT 411 411 0.082 0.008 1.373 1.455 N 1 B B C5 C7 DT DT 411 411 0.105 0.006 1.496 1.601 N 1 B B C4 C5 DG DG 412 412 0.049 0.007 1.379 1.428 N 1 C C N3 C4 DG DG 428 428 0.045 0.007 1.350 1.395 N 1 C C O3' P DG DC 431 432 -0.090 0.012 1.607 1.517 Y 1 A GLN 69 50.12 -129.17 1 A GLU 82 -159.17 87.89 1 A SER 104 72.16 -29.73 1 A PHE 162 -83.09 -74.33 1 A THR 247 -137.44 -156.91 0.2026000 0.1646000 1.42 10.00 25384 8521 76108 76108 31207 11.2 95.2 RANDOM 1 FREE R 0.0 initial MODEL OF BR-URACIL-CONTAINING DNA COMPLEXED WITH ENDONUCLEASE VIII AT 2.4A RESOLUTION ENGH & HUBER MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228 338 0.00 2830.41 1.42 10.00 397 2874 16 381 2080 0.014 0.035 0.000 0.0255 0.060 0.070 0.022 0.004 0.039 0.092 0.2020000 0.1640000 1.44 8521 11 1.42 40.0 1K3W 86586 0.0830000 1 8.9 5.5 95.2 1.42 1.44 3191 0.3750000 2 71.4 refinement SHELXL-97 data scaling SCALEPACK refinement CNS data reduction DENZO phasing CNS Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNA 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N 6 N N 6 N N 6 N N A GLU 2 C GLU 2 HELX_P A LYS 18 C LYS 18 1 1 17 A PHE 29 C PHE 29 HELX_P A LYS 33 C LYS 33 5 2 5 A THR 34 C THR 34 HELX_P A ILE 40 C ILE 40 1 3 7 A GLU 114 C GLU 114 HELX_P A HIS 119 C HIS 119 1 4 6 A HIS 119 C HIS 119 HELX_P A VAL 125 C VAL 125 1 5 7 A THR 135 C THR 135 HELX_P A SER 145 C SER 145 1 6 11 A GLN 152 C GLN 152 HELX_P A LEU 157 C LEU 157 1 7 6 A GLY 167 C GLY 167 HELX_P A VAL 178 C VAL 178 1 8 12 A LYS 185 C LYS 185 HELX_P A LEU 189 C LEU 189 5 9 5 A ASN 190 C ASN 190 HELX_P A ARG 212 C ARG 212 1 10 23 covale 1.627 one C DA 426 B O3' DA 6 1_555 C PED 427 B P PED 7 1_555 covale 1.603 one C PED 427 B O3' PED 7 1_555 C DG 428 B P DG 8 1_555 covale 1.434 one C PED 427 B C1' PED 7 1_555 A PRO 1 C N PRO 1 1_555 metalc 2.394 A CYS 237 C SG CYS 237 1_555 A ZN 501 D ZN ZN 1_555 metalc 2.310 A CYS 240 C SG CYS 240 1_555 A ZN 501 D ZN ZN 1_555 metalc 2.337 A CYS 257 C SG CYS 257 1_555 A ZN 501 D ZN ZN 1_555 metalc 2.328 A CYS 260 C SG CYS 260 1_555 A ZN 501 D ZN ZN 1_555 hydrog WATSON-CRICK B DT 405 A N3 DT 5 1_555 C DA 429 B N1 DA 9 1_555 hydrog WATSON-CRICK B DT 405 A O4 DT 5 1_555 C DA 429 B N6 DA 9 1_555 hydrog WATSON-CRICK B DC 406 A N3 DC 6 1_555 C DG 428 B N1 DG 8 1_555 hydrog WATSON-CRICK B DC 406 A N4 DC 6 1_555 C DG 428 B O6 DG 8 1_555 hydrog WATSON-CRICK B DC 406 A O2 DC 6 1_555 C DG 428 B N2 DG 8 1_555 hydrog WATSON-CRICK B DT 408 A N3 DT 8 1_555 C DA 426 B N1 DA 6 1_555 hydrog WATSON-CRICK B DT 408 A O4 DT 8 1_555 C DA 426 B N6 DA 6 1_555 hydrog WATSON-CRICK B DC 409 A N3 DC 9 1_555 C DG 425 B N1 DG 5 1_555 hydrog WATSON-CRICK B DC 409 A N4 DC 9 1_555 C DG 425 B O6 DG 5 1_555 hydrog WATSON-CRICK B DC 409 A O2 DC 9 1_555 C DG 425 B N2 DG 5 1_555 hydrog WATSON-CRICK B DC 410 A N3 DC 10 1_555 C DG 424 B N1 DG 4 1_555 hydrog WATSON-CRICK B DC 410 A N4 DC 10 1_555 C DG 424 B O6 DG 4 1_555 hydrog WATSON-CRICK B DC 410 A O2 DC 10 1_555 C DG 424 B N2 DG 4 1_555 hydrog WATSON-CRICK B DT 411 A N3 DT 11 1_555 C DA 423 B N1 DA 3 1_555 hydrog WATSON-CRICK B DT 411 A O4 DT 11 1_555 C DA 423 B N6 DA 3 1_555 hydrog WATSON-CRICK B DG 412 A N1 DG 12 1_555 C DC 422 B N3 DC 2 1_555 hydrog WATSON-CRICK B DG 412 A N2 DG 12 1_555 C DC 422 B O2 DC 2 1_555 hydrog WATSON-CRICK B DG 412 A O6 DG 12 1_555 C DC 422 B N4 DC 2 1_555 HYDROLASE/DNA HYDROLASE/DNA, HYDROLASE-DNA complex END8_ECOLI UNP 3 1 P50465 PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKPYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG EEPQTTRVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC GSIIEKTTLSSRPFYWCPGCQH 1K3W PDB 1 1K3W 1K3W PDB 2 1K3W 1 262 1K3W 1 262 P50465 A 1 1 262 401 413 1K3W 401 413 1K3W B 2 1 13 421 433 1K3W 421 433 1K3W C 3 1 13 1 PRO SEE REMARK 999 THR 34 1K3W A P50465 UNP 34 34 1 THR SEE REMARK 999 ARG 112 1K3W A P50465 UNP 112 112 4 4 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASP 24 C ASP 24 A PHE 27 C PHE 27 A LEU 89 C LEU 89 A GLN 94 C GLN 94 A LYS 98 C LYS 98 A TYR 103 C TYR 103 A VAL 73 C VAL 73 A ASP 78 C ASP 78 A VAL 44 C VAL 44 A ARG 50 C ARG 50 A ALA 53 C ALA 53 A PHE 58 C PHE 58 A THR 63 C THR 63 A HIS 67 C HIS 67 A ASP 107 C ASP 107 A LEU 111 C LEU 111 A GLU 245 C GLU 245 A LEU 249 C LEU 249 A ARG 252 C ARG 252 A TRP 256 C TRP 256 BINDING SITE FOR RESIDUE ZN A 501 A ZN 501 Software 4 BINDING SITE FOR RESIDUE SO4 A 551 A SO4 551 Software 6 BINDING SITE FOR RESIDUE SO4 A 552 A SO4 552 Software 8 BINDING SITE FOR RESIDUE SO4 A 553 A SO4 553 Software 6 A CYS 237 C CYS 237 4 1_555 A CYS 240 C CYS 240 4 1_555 A CYS 257 C CYS 257 4 1_555 A CYS 260 C CYS 260 4 1_555 A ARG 8 C ARG 8 6 1_555 A ASN 12 C ASN 12 6 1_555 A GLY 213 C GLY 213 6 1_555 A HOH 627 J HOH 6 1_555 A HOH 906 J HOH 6 1_555 A HOH 918 J HOH 6 1_555 A ARG 112 C ARG 112 8 4_665 A LYS 140 C LYS 140 8 1_555 A ALA 191 C ALA 191 8 1_555 A ASP 195 C ASP 195 8 1_555 A HOH 636 J HOH 8 1_555 A HOH 863 J HOH 8 1_555 A HOH 909 J HOH 8 1_555 A HOH 938 J HOH 8 8_663 A ASN 190 C ASN 190 6 1_555 A ALA 191 C ALA 191 6 1_555 A HOH 610 J HOH 6 4_665 A HOH 866 J HOH 6 1_555 A HOH 915 J HOH 6 4_665 A HOH 946 J HOH 6 4_665 95 P 43 2 2