0.013153
0.000000
0.000000
0.000000
0.013153
0.000000
0.000000
0.000000
0.006063
0.000000
0.000000
0.000000
Golan, G.
Zharkov, D.O.
Gilboa, R.
Fernandes, A.S.
Kycia, J.H.
Gerchman, S.E.
Rieger, R.A.
Grollman, A.P.
Shoham, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
76.030
76.030
164.933
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H13 O6 P
200.127
PENTANE-3,4-DIOL-5-PHOSPHATE
OPEN FORM OF 1'-2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
P
N
394
N
O
N
395
N
O
N
396
N
O
N
397
N
O
N
398
N
C
N
399
N
C
N
400
R
C
N
401
N
O
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
N
446
N
C
N
447
N
C
N
448
N
O
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
N
N
459
S
C
N
460
N
C
N
461
N
O
N
462
N
C
N
463
N
O
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
S
N
473
N
O
N
474
N
O
N
475
N
O
N
476
N
O
N
477
N
N
N
478
S
C
N
479
N
C
N
480
N
O
N
481
R
C
N
482
N
O
N
483
N
C
N
484
N
O
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
N
N
495
S
C
N
496
N
C
N
497
N
O
N
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
Y
502
N
N
Y
503
N
C
Y
504
N
C
Y
505
N
C
Y
506
N
C
Y
507
N
C
N
508
N
O
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
N
N
522
S
C
N
523
N
C
N
524
N
O
N
525
N
C
Y
526
N
C
Y
527
N
C
Y
528
N
C
Y
529
N
C
Y
530
N
C
Y
531
N
C
N
532
N
O
N
533
N
O
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
N
N
546
S
C
N
547
N
C
N
548
N
O
N
549
N
C
N
550
N
C
N
551
N
C
N
552
N
O
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
Y
421
N
doub
Y
422
N
sing
Y
423
N
sing
N
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
doub
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
doub
N
464
N
doub
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
doub
Y
499
N
sing
Y
500
N
sing
N
501
N
sing
Y
502
N
sing
Y
503
N
doub
N
504
N
sing
Y
505
N
doub
N
506
N
sing
Y
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
doub
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
Y
522
N
doub
Y
523
N
sing
Y
524
N
sing
N
525
N
sing
Y
526
N
doub
N
527
N
sing
Y
528
N
doub
N
529
N
sing
Y
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
doub
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
21
789
800
10.1093/emboj/21.4.789
11847126
Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate.
2002
10.2210/pdb1k3w/pdb
pdb_00001k3w
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
CCD
2001-02-26
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
X26C
NSLS
1.1
SYNCHROTRON
NSLS BEAMLINE X26C
3958.571
5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3'
1
syn
polymer
3863.531
5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'
1
syn
polymer
29814.994
Endonuclease VIII
3.2.2.-
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
96.063
SULFATE ION
3
syn
non-polymer
18.015
water
397
nat
water
no
no
(DG)(DG)(DC)(DT)(DT)(DC)(DA)(DT)(DC)(DC)(DT)(DG)(DG)
GGCTTCATCCTGG
B
polydeoxyribonucleotide
no
yes
(DC)(DC)(DA)(DG)(DG)(DA)(PED)(DG)(DA)(DA)(DG)(DC)(DC)
CCAGGAXGAAGCC
C
polydeoxyribonucleotide
no
no
PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG
EEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ
AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC
GSIIEKTTLSSRPFYWCPGCQH
PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG
EEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ
AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC
GSIIEKTTLSSRPFYWCPGCQH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
nei
562
Escherichia coli
562
Escherichia coli
B834(DE3)
plasmid
pET13a
1
3.03
60.79
VAPOR DIFFUSION, HANGING DROP
6.5
1.8M Ammonium-sulfate, 0.1M sodium-citrate pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 288K
288
-5.318
1
20
B
405
C
429
0.036
B_DT405:DA429_C
1
-2.608
-0.064
0.026
-0.276
6.266
1
19
B
406
C
428
0.486
B_DC406:DG428_C
2
4.299
0.204
-0.002
-0.186
-7.443
1
20
B
408
C
426
3.529
B_DT408:DA426_C
3
-11.369
-0.164
0.159
-0.185
4.432
1
19
B
409
C
425
2.566
B_DC409:DG425_C
4
-13.573
0.340
-0.221
-0.256
-5.417
1
19
B
410
C
424
-0.320
B_DC410:DG424_C
5
-10.856
-0.283
0.165
-0.169
-10.982
1
20
B
411
C
423
-9.421
B_DT411:DA423_C
6
-17.333
0.451
0.159
-0.415
-12.247
1
19
B
412
C
422
-0.012
B_DG412:DC422_C
7
-1.547
-0.404
-0.685
-0.278
3.134
28.800
B
B
405
406
8.278
C
C
429
428
3.219
4.103
-0.220
-0.431
BB_DT405DC406:DG428DA429_CC
1
-1.120
2.259
28.491
-1.763
0.198
5.192
65.667
B
B
406
408
44.826
C
C
428
426
7.354
44.877
-0.296
-0.617
BB_DC406DT408:DA426DG428_CC
2
5.923
-5.916
48.891
-4.772
0.827
3.006
38.241
B
B
408
409
2.052
C
C
426
425
2.990
1.343
0.248
0.215
BB_DT408DC409:DG425DA426_CC
3
3.202
-4.894
38.089
0.173
-0.008
3.219
35.041
B
B
409
410
21.433
C
C
425
424
3.494
12.631
0.069
-0.151
BB_DC409DC410:DG424DG425_CC
4
0.117
-0.198
32.752
-2.270
-0.096
3.503
40.332
B
B
410
411
-10.144
C
C
424
423
3.499
-6.961
-0.703
-0.192
BB_DC410DT411:DA423DG424_CC
5
-1.274
1.857
39.732
0.568
0.865
3.547
38.114
B
B
411
412
-0.286
C
C
423
422
3.376
-0.185
1.181
1.560
BB_DT411DG412:DC422DA423_CC
6
8.838
-13.650
37.111
2.414
-0.607
software
struct_conn
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Derived calculations
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-10-04
1
1
2008-04-27
1
2
2011-07-13
1
3
2019-07-24
1
4
2024-04-03
_software.classification
_software.name
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2001-10-04
REL
ZN
ZINC ION
SO4
SULFATE ION
HOH
water
initial MODEL OF BR-URACIL-CONTAINING DNA COMPLEXED WITH ENDONUCLEASE VIII AT 2.4A RESOLUTION
Other
experimental model
ZN
501
4
ZN
ZN
501
A
SO4
551
5
SO4
SO4
551
A
SO4
552
5
SO4
SO4
552
A
SO4
553
5
SO4
SO4
553
A
HOH
744
6
HOH
HOH
744
B
HOH
784
6
HOH
HOH
784
B
HOH
796
6
HOH
HOH
796
B
HOH
799
6
HOH
HOH
799
B
HOH
805
6
HOH
HOH
805
B
HOH
811
6
HOH
HOH
811
B
HOH
835
6
HOH
HOH
835
B
HOH
853
6
HOH
HOH
853
B
HOH
862
6
HOH
HOH
862
B
HOH
888
6
HOH
HOH
888
B
HOH
926
6
HOH
HOH
926
B
HOH
932
6
HOH
HOH
932
B
HOH
962
6
HOH
HOH
962
B
HOH
986
6
HOH
HOH
986
B
HOH
624
6
HOH
HOH
624
C
HOH
669
6
HOH
HOH
669
C
HOH
716
6
HOH
HOH
716
C
HOH
737
6
HOH
HOH
737
C
HOH
764
6
HOH
HOH
764
C
HOH
841
6
HOH
HOH
841
C
HOH
845
6
HOH
HOH
845
C
HOH
858
6
HOH
HOH
858
C
HOH
867
6
HOH
HOH
867
C
HOH
875
6
HOH
HOH
875
C
HOH
880
6
HOH
HOH
880
C
HOH
882
6
HOH
HOH
882
C
HOH
907
6
HOH
HOH
907
C
HOH
912
6
HOH
HOH
912
C
HOH
921
6
HOH
HOH
921
C
HOH
944
6
HOH
HOH
944
C
HOH
964
6
HOH
HOH
964
C
HOH
985
6
HOH
HOH
985
C
HOH
995
6
HOH
HOH
995
C
HOH
601
6
HOH
HOH
601
A
HOH
602
6
HOH
HOH
602
A
HOH
603
6
HOH
HOH
603
A
HOH
604
6
HOH
HOH
604
A
HOH
605
6
HOH
HOH
605
A
HOH
606
6
HOH
HOH
606
A
HOH
607
6
HOH
HOH
607
A
HOH
608
6
HOH
HOH
608
A
HOH
609
6
HOH
HOH
609
A
HOH
610
6
HOH
HOH
610
A
HOH
611
6
HOH
HOH
611
A
HOH
612
6
HOH
HOH
612
A
HOH
613
6
HOH
HOH
613
A
HOH
614
6
HOH
HOH
614
A
HOH
615
6
HOH
HOH
615
A
HOH
616
6
HOH
HOH
616
A
HOH
617
6
HOH
HOH
617
A
HOH
618
6
HOH
HOH
618
A
HOH
619
6
HOH
HOH
619
A
HOH
620
6
HOH
HOH
620
A
HOH
621
6
HOH
HOH
621
A
HOH
622
6
HOH
HOH
622
A
HOH
623
6
HOH
HOH
623
A
HOH
625
6
HOH
HOH
625
A
HOH
626
6
HOH
HOH
626
A
HOH
627
6
HOH
HOH
627
A
HOH
628
6
HOH
HOH
628
A
HOH
629
6
HOH
HOH
629
A
HOH
630
6
HOH
HOH
630
A
HOH
631
6
HOH
HOH
631
A
HOH
632
6
HOH
HOH
632
A
HOH
633
6
HOH
HOH
633
A
HOH
634
6
HOH
HOH
634
A
HOH
635
6
HOH
HOH
635
A
HOH
636
6
HOH
HOH
636
A
HOH
637
6
HOH
HOH
637
A
HOH
638
6
HOH
HOH
638
A
HOH
639
6
HOH
HOH
639
A
HOH
640
6
HOH
HOH
640
A
HOH
641
6
HOH
HOH
641
A
HOH
642
6
HOH
HOH
642
A
HOH
643
6
HOH
HOH
643
A
HOH
644
6
HOH
HOH
644
A
HOH
645
6
HOH
HOH
645
A
HOH
646
6
HOH
HOH
646
A
HOH
647
6
HOH
HOH
647
A
HOH
648
6
HOH
HOH
648
A
HOH
649
6
HOH
HOH
649
A
HOH
650
6
HOH
HOH
650
A
HOH
651
6
HOH
HOH
651
A
HOH
652
6
HOH
HOH
652
A
HOH
653
6
HOH
HOH
653
A
HOH
654
6
HOH
HOH
654
A
HOH
655
6
HOH
HOH
655
A
HOH
656
6
HOH
HOH
656
A
HOH
657
6
HOH
HOH
657
A
HOH
658
6
HOH
HOH
658
A
HOH
659
6
HOH
HOH
659
A
HOH
660
6
HOH
HOH
660
A
HOH
661
6
HOH
HOH
661
A
HOH
662
6
HOH
HOH
662
A
HOH
663
6
HOH
HOH
663
A
HOH
664
6
HOH
HOH
664
A
HOH
665
6
HOH
HOH
665
A
HOH
666
6
HOH
HOH
666
A
HOH
667
6
HOH
HOH
667
A
HOH
668
6
HOH
HOH
668
A
HOH
670
6
HOH
HOH
670
A
HOH
671
6
HOH
HOH
671
A
HOH
672
6
HOH
HOH
672
A
HOH
673
6
HOH
HOH
673
A
HOH
674
6
HOH
HOH
674
A
HOH
675
6
HOH
HOH
675
A
HOH
676
6
HOH
HOH
676
A
HOH
677
6
HOH
HOH
677
A
HOH
678
6
HOH
HOH
678
A
HOH
679
6
HOH
HOH
679
A
HOH
680
6
HOH
HOH
680
A
HOH
681
6
HOH
HOH
681
A
HOH
682
6
HOH
HOH
682
A
HOH
683
6
HOH
HOH
683
A
HOH
684
6
HOH
HOH
684
A
HOH
685
6
HOH
HOH
685
A
HOH
686
6
HOH
HOH
686
A
HOH
687
6
HOH
HOH
687
A
HOH
688
6
HOH
HOH
688
A
HOH
689
6
HOH
HOH
689
A
HOH
690
6
HOH
HOH
690
A
HOH
691
6
HOH
HOH
691
A
HOH
692
6
HOH
HOH
692
A
HOH
693
6
HOH
HOH
693
A
HOH
694
6
HOH
HOH
694
A
HOH
695
6
HOH
HOH
695
A
HOH
696
6
HOH
HOH
696
A
HOH
697
6
HOH
HOH
697
A
HOH
698
6
HOH
HOH
698
A
HOH
699
6
HOH
HOH
699
A
HOH
700
6
HOH
HOH
700
A
HOH
701
6
HOH
HOH
701
A
HOH
702
6
HOH
HOH
702
A
HOH
703
6
HOH
HOH
703
A
HOH
704
6
HOH
HOH
704
A
HOH
705
6
HOH
HOH
705
A
HOH
706
6
HOH
HOH
706
A
HOH
707
6
HOH
HOH
707
A
HOH
708
6
HOH
HOH
708
A
HOH
709
6
HOH
HOH
709
A
HOH
710
6
HOH
HOH
710
A
HOH
711
6
HOH
HOH
711
A
HOH
712
6
HOH
HOH
712
A
HOH
713
6
HOH
HOH
713
A
HOH
714
6
HOH
HOH
714
A
HOH
715
6
HOH
HOH
715
A
HOH
717
6
HOH
HOH
717
A
HOH
718
6
HOH
HOH
718
A
HOH
719
6
HOH
HOH
719
A
HOH
720
6
HOH
HOH
720
A
HOH
721
6
HOH
HOH
721
A
HOH
722
6
HOH
HOH
722
A
HOH
723
6
HOH
HOH
723
A
HOH
724
6
HOH
HOH
724
A
HOH
725
6
HOH
HOH
725
A
HOH
726
6
HOH
HOH
726
A
HOH
727
6
HOH
HOH
727
A
HOH
728
6
HOH
HOH
728
A
HOH
729
6
HOH
HOH
729
A
HOH
730
6
HOH
HOH
730
A
HOH
731
6
HOH
HOH
731
A
HOH
732
6
HOH
HOH
732
A
HOH
733
6
HOH
HOH
733
A
HOH
734
6
HOH
HOH
734
A
HOH
735
6
HOH
HOH
735
A
HOH
736
6
HOH
HOH
736
A
HOH
738
6
HOH
HOH
738
A
HOH
739
6
HOH
HOH
739
A
HOH
740
6
HOH
HOH
740
A
HOH
741
6
HOH
HOH
741
A
HOH
742
6
HOH
HOH
742
A
HOH
743
6
HOH
HOH
743
A
HOH
745
6
HOH
HOH
745
A
HOH
746
6
HOH
HOH
746
A
HOH
747
6
HOH
HOH
747
A
HOH
748
6
HOH
HOH
748
A
HOH
749
6
HOH
HOH
749
A
HOH
750
6
HOH
HOH
750
A
HOH
751
6
HOH
HOH
751
A
HOH
752
6
HOH
HOH
752
A
HOH
753
6
HOH
HOH
753
A
HOH
754
6
HOH
HOH
754
A
HOH
755
6
HOH
HOH
755
A
HOH
756
6
HOH
HOH
756
A
HOH
757
6
HOH
HOH
757
A
HOH
758
6
HOH
HOH
758
A
HOH
759
6
HOH
HOH
759
A
HOH
760
6
HOH
HOH
760
A
HOH
761
6
HOH
HOH
761
A
HOH
762
6
HOH
HOH
762
A
HOH
763
6
HOH
HOH
763
A
HOH
765
6
HOH
HOH
765
A
HOH
766
6
HOH
HOH
766
A
HOH
767
6
HOH
HOH
767
A
HOH
768
6
HOH
HOH
768
A
HOH
769
6
HOH
HOH
769
A
HOH
770
6
HOH
HOH
770
A
HOH
771
6
HOH
HOH
771
A
HOH
772
6
HOH
HOH
772
A
HOH
773
6
HOH
HOH
773
A
HOH
774
6
HOH
HOH
774
A
HOH
775
6
HOH
HOH
775
A
HOH
776
6
HOH
HOH
776
A
HOH
777
6
HOH
HOH
777
A
HOH
778
6
HOH
HOH
778
A
HOH
779
6
HOH
HOH
779
A
HOH
780
6
HOH
HOH
780
A
HOH
781
6
HOH
HOH
781
A
HOH
782
6
HOH
HOH
782
A
HOH
783
6
HOH
HOH
783
A
HOH
785
6
HOH
HOH
785
A
HOH
786
6
HOH
HOH
786
A
HOH
787
6
HOH
HOH
787
A
HOH
788
6
HOH
HOH
788
A
HOH
789
6
HOH
HOH
789
A
HOH
790
6
HOH
HOH
790
A
HOH
791
6
HOH
HOH
791
A
HOH
792
6
HOH
HOH
792
A
HOH
793
6
HOH
HOH
793
A
HOH
794
6
HOH
HOH
794
A
HOH
795
6
HOH
HOH
795
A
HOH
797
6
HOH
HOH
797
A
HOH
798
6
HOH
HOH
798
A
HOH
800
6
HOH
HOH
800
A
HOH
801
6
HOH
HOH
801
A
HOH
802
6
HOH
HOH
802
A
HOH
803
6
HOH
HOH
803
A
HOH
804
6
HOH
HOH
804
A
HOH
806
6
HOH
HOH
806
A
HOH
807
6
HOH
HOH
807
A
HOH
808
6
HOH
HOH
808
A
HOH
809
6
HOH
HOH
809
A
HOH
810
6
HOH
HOH
810
A
HOH
812
6
HOH
HOH
812
A
HOH
813
6
HOH
HOH
813
A
HOH
814
6
HOH
HOH
814
A
HOH
815
6
HOH
HOH
815
A
HOH
816
6
HOH
HOH
816
A
HOH
817
6
HOH
HOH
817
A
HOH
818
6
HOH
HOH
818
A
HOH
819
6
HOH
HOH
819
A
HOH
820
6
HOH
HOH
820
A
HOH
821
6
HOH
HOH
821
A
HOH
822
6
HOH
HOH
822
A
HOH
823
6
HOH
HOH
823
A
HOH
824
6
HOH
HOH
824
A
HOH
825
6
HOH
HOH
825
A
HOH
826
6
HOH
HOH
826
A
HOH
827
6
HOH
HOH
827
A
HOH
828
6
HOH
HOH
828
A
HOH
829
6
HOH
HOH
829
A
HOH
830
6
HOH
HOH
830
A
HOH
831
6
HOH
HOH
831
A
HOH
832
6
HOH
HOH
832
A
HOH
833
6
HOH
HOH
833
A
HOH
834
6
HOH
HOH
834
A
HOH
836
6
HOH
HOH
836
A
HOH
837
6
HOH
HOH
837
A
HOH
838
6
HOH
HOH
838
A
HOH
839
6
HOH
HOH
839
A
HOH
840
6
HOH
HOH
840
A
HOH
842
6
HOH
HOH
842
A
HOH
843
6
HOH
HOH
843
A
HOH
844
6
HOH
HOH
844
A
HOH
846
6
HOH
HOH
846
A
HOH
847
6
HOH
HOH
847
A
HOH
848
6
HOH
HOH
848
A
HOH
849
6
HOH
HOH
849
A
HOH
850
6
HOH
HOH
850
A
HOH
851
6
HOH
HOH
851
A
HOH
852
6
HOH
HOH
852
A
HOH
854
6
HOH
HOH
854
A
HOH
855
6
HOH
HOH
855
A
HOH
856
6
HOH
HOH
856
A
HOH
857
6
HOH
HOH
857
A
HOH
859
6
HOH
HOH
859
A
HOH
860
6
HOH
HOH
860
A
HOH
861
6
HOH
HOH
861
A
HOH
863
6
HOH
HOH
863
A
HOH
864
6
HOH
HOH
864
A
HOH
865
6
HOH
HOH
865
A
HOH
866
6
HOH
HOH
866
A
HOH
868
6
HOH
HOH
868
A
HOH
869
6
HOH
HOH
869
A
HOH
870
6
HOH
HOH
870
A
HOH
871
6
HOH
HOH
871
A
HOH
872
6
HOH
HOH
872
A
HOH
873
6
HOH
HOH
873
A
HOH
874
6
HOH
HOH
874
A
HOH
876
6
HOH
HOH
876
A
HOH
877
6
HOH
HOH
877
A
HOH
878
6
HOH
HOH
878
A
HOH
879
6
HOH
HOH
879
A
HOH
881
6
HOH
HOH
881
A
HOH
884
6
HOH
HOH
884
A
HOH
885
6
HOH
HOH
885
A
HOH
886
6
HOH
HOH
886
A
HOH
887
6
HOH
HOH
887
A
HOH
889
6
HOH
HOH
889
A
HOH
890
6
HOH
HOH
890
A
HOH
891
6
HOH
HOH
891
A
HOH
892
6
HOH
HOH
892
A
HOH
893
6
HOH
HOH
893
A
HOH
894
6
HOH
HOH
894
A
HOH
895
6
HOH
HOH
895
A
HOH
896
6
HOH
HOH
896
A
HOH
897
6
HOH
HOH
897
A
HOH
898
6
HOH
HOH
898
A
HOH
899
6
HOH
HOH
899
A
HOH
900
6
HOH
HOH
900
A
HOH
901
6
HOH
HOH
901
A
HOH
902
6
HOH
HOH
902
A
HOH
903
6
HOH
HOH
903
A
HOH
904
6
HOH
HOH
904
A
HOH
905
6
HOH
HOH
905
A
HOH
906
6
HOH
HOH
906
A
HOH
908
6
HOH
HOH
908
A
HOH
909
6
HOH
HOH
909
A
HOH
910
6
HOH
HOH
910
A
HOH
911
6
HOH
HOH
911
A
HOH
913
6
HOH
HOH
913
A
HOH
914
6
HOH
HOH
914
A
HOH
915
6
HOH
HOH
915
A
HOH
916
6
HOH
HOH
916
A
HOH
917
6
HOH
HOH
917
A
HOH
918
6
HOH
HOH
918
A
HOH
919
6
HOH
HOH
919
A
HOH
920
6
HOH
HOH
920
A
HOH
922
6
HOH
HOH
922
A
HOH
923
6
HOH
HOH
923
A
HOH
924
6
HOH
HOH
924
A
HOH
925
6
HOH
HOH
925
A
HOH
927
6
HOH
HOH
927
A
HOH
928
6
HOH
HOH
928
A
HOH
929
6
HOH
HOH
929
A
HOH
930
6
HOH
HOH
930
A
HOH
931
6
HOH
HOH
931
A
HOH
933
6
HOH
HOH
933
A
HOH
934
6
HOH
HOH
934
A
HOH
935
6
HOH
HOH
935
A
HOH
936
6
HOH
HOH
936
A
HOH
937
6
HOH
HOH
937
A
HOH
938
6
HOH
HOH
938
A
HOH
939
6
HOH
HOH
939
A
HOH
940
6
HOH
HOH
940
A
HOH
941
6
HOH
HOH
941
A
HOH
942
6
HOH
HOH
942
A
HOH
943
6
HOH
HOH
943
A
HOH
945
6
HOH
HOH
945
A
HOH
946
6
HOH
HOH
946
A
HOH
947
6
HOH
HOH
947
A
HOH
948
6
HOH
HOH
948
A
HOH
949
6
HOH
HOH
949
A
HOH
950
6
HOH
HOH
950
A
HOH
951
6
HOH
HOH
951
A
HOH
952
6
HOH
HOH
952
A
HOH
953
6
HOH
HOH
953
A
HOH
954
6
HOH
HOH
954
A
HOH
955
6
HOH
HOH
955
A
HOH
956
6
HOH
HOH
956
A
HOH
957
6
HOH
HOH
957
A
HOH
958
6
HOH
HOH
958
A
HOH
959
6
HOH
HOH
959
A
HOH
960
6
HOH
HOH
960
A
HOH
961
6
HOH
HOH
961
A
HOH
963
6
HOH
HOH
963
A
HOH
965
6
HOH
HOH
965
A
HOH
966
6
HOH
HOH
966
A
HOH
967
6
HOH
HOH
967
A
HOH
968
6
HOH
HOH
968
A
HOH
969
6
HOH
HOH
969
A
HOH
970
6
HOH
HOH
970
A
HOH
971
6
HOH
HOH
971
A
HOH
972
6
HOH
HOH
972
A
HOH
973
6
HOH
HOH
973
A
HOH
974
6
HOH
HOH
974
A
HOH
975
6
HOH
HOH
975
A
HOH
976
6
HOH
HOH
976
A
HOH
979
6
HOH
HOH
979
A
HOH
981
6
HOH
HOH
981
A
HOH
982
6
HOH
HOH
982
A
HOH
983
6
HOH
HOH
983
A
HOH
987
6
HOH
HOH
987
A
HOH
988
6
HOH
HOH
988
A
HOH
989
6
HOH
HOH
989
A
HOH
990
6
HOH
HOH
990
A
HOH
991
6
HOH
HOH
991
A
HOH
996
6
HOH
HOH
996
A
HOH
997
6
HOH
HOH
997
A
HOH
999
6
HOH
HOH
999
A
HOH
1001
6
HOH
HOH
1001
A
HOH
1003
6
HOH
HOH
1003
A
HOH
1004
6
HOH
HOH
1004
A
HOH
1007
6
HOH
HOH
1007
A
HOH
1008
6
HOH
HOH
1008
A
HOH
1009
6
HOH
HOH
1009
A
HOH
1010
6
HOH
HOH
1010
A
n
1
401
B
n
2
402
B
n
3
403
B
n
4
404
B
T
405
n
5
DT
405
B
C
406
n
6
DC
406
B
A
407
n
7
DA
407
B
T
408
n
8
DT
408
B
C
409
n
9
DC
409
B
C
410
n
10
DC
410
B
T
411
n
11
DT
411
B
G
412
n
12
DG
412
B
n
13
413
B
n
1
421
C
C
422
n
2
DC
422
C
A
423
n
3
DA
423
C
G
424
n
4
DG
424
C
G
425
n
5
DG
425
C
A
426
n
6
DA
426
C
PED
427
n
7
PED
427
C
G
428
n
8
DG
428
C
A
429
n
9
DA
429
C
A
430
n
10
DA
430
C
G
431
n
11
DG
431
C
C
432
n
12
DC
432
C
n
13
433
C
PRO
1
n
1
PRO
1
A
GLU
2
n
2
GLU
2
A
GLY
3
n
3
GLY
3
A
PRO
4
n
4
PRO
4
A
GLU
5
n
5
GLU
5
A
ILE
6
n
6
ILE
6
A
ARG
7
n
7
ARG
7
A
ARG
8
n
8
ARG
8
A
ALA
9
n
9
ALA
9
A
ALA
10
n
10
ALA
10
A
ASP
11
n
11
ASP
11
A
ASN
12
n
12
ASN
12
A
LEU
13
n
13
LEU
13
A
GLU
14
n
14
GLU
14
A
ALA
15
n
15
ALA
15
A
ALA
16
n
16
ALA
16
A
ILE
17
n
17
ILE
17
A
LYS
18
n
18
LYS
18
A
GLY
19
n
19
GLY
19
A
LYS
20
n
20
LYS
20
A
PRO
21
n
21
PRO
21
A
LEU
22
n
22
LEU
22
A
THR
23
n
23
THR
23
A
ASP
24
n
24
ASP
24
A
VAL
25
n
25
VAL
25
A
TRP
26
n
26
TRP
26
A
PHE
27
n
27
PHE
27
A
ALA
28
n
28
ALA
28
A
PHE
29
n
29
PHE
29
A
PRO
30
n
30
PRO
30
A
GLN
31
n
31
GLN
31
A
LEU
32
n
32
LEU
32
A
LYS
33
n
33
LYS
33
A
THR
34
n
34
THR
34
A
TYR
35
n
35
TYR
35
A
GLN
36
n
36
GLN
36
A
SER
37
n
37
SER
37
A
GLN
38
n
38
GLN
38
A
LEU
39
n
39
LEU
39
A
ILE
40
n
40
ILE
40
A
GLY
41
n
41
GLY
41
A
GLN
42
n
42
GLN
42
A
HIS
43
n
43
HIS
43
A
VAL
44
n
44
VAL
44
A
THR
45
n
45
THR
45
A
HIS
46
n
46
HIS
46
A
VAL
47
n
47
VAL
47
A
GLU
48
n
48
GLU
48
A
THR
49
n
49
THR
49
A
ARG
50
n
50
ARG
50
A
GLY
51
n
51
GLY
51
A
LYS
52
n
52
LYS
52
A
ALA
53
n
53
ALA
53
A
LEU
54
n
54
LEU
54
A
LEU
55
n
55
LEU
55
A
THR
56
n
56
THR
56
A
HIS
57
n
57
HIS
57
A
PHE
58
n
58
PHE
58
A
SER
59
n
59
SER
59
A
ASN
60
n
60
ASN
60
A
ASP
61
n
61
ASP
61
A
LEU
62
n
62
LEU
62
A
THR
63
n
63
THR
63
A
LEU
64
n
64
LEU
64
A
TYR
65
n
65
TYR
65
A
SER
66
n
66
SER
66
A
HIS
67
n
67
HIS
67
A
ASN
68
n
68
ASN
68
A
GLN
69
n
69
GLN
69
A
LEU
70
n
70
LEU
70
A
TYR
71
n
71
TYR
71
A
GLY
72
n
72
GLY
72
A
VAL
73
n
73
VAL
73
A
TRP
74
n
74
TRP
74
A
ARG
75
n
75
ARG
75
A
VAL
76
n
76
VAL
76
A
VAL
77
n
77
VAL
77
A
ASP
78
n
78
ASP
78
A
THR
79
n
79
THR
79
A
GLY
80
n
80
GLY
80
A
GLU
81
n
81
GLU
81
A
GLU
82
n
82
GLU
82
A
PRO
83
n
83
PRO
83
A
GLN
84
n
84
GLN
84
A
THR
85
n
85
THR
85
A
THR
86
n
86
THR
86
A
ARG
87
n
87
ARG
87
A
VAL
88
n
88
VAL
88
A
LEU
89
n
89
LEU
89
A
ARG
90
n
90
ARG
90
A
VAL
91
n
91
VAL
91
A
LYS
92
n
92
LYS
92
A
LEU
93
n
93
LEU
93
A
GLN
94
n
94
GLN
94
A
THR
95
n
95
THR
95
A
ALA
96
n
96
ALA
96
A
ASP
97
n
97
ASP
97
A
LYS
98
n
98
LYS
98
A
THR
99
n
99
THR
99
A
ILE
100
n
100
ILE
100
A
LEU
101
n
101
LEU
101
A
LEU
102
n
102
LEU
102
A
TYR
103
n
103
TYR
103
A
SER
104
n
104
SER
104
A
ALA
105
n
105
ALA
105
A
SER
106
n
106
SER
106
A
ASP
107
n
107
ASP
107
A
ILE
108
n
108
ILE
108
A
GLU
109
n
109
GLU
109
A
MET
110
n
110
MET
110
A
LEU
111
n
111
LEU
111
A
ARG
112
n
112
ARG
112
A
PRO
113
n
113
PRO
113
A
GLU
114
n
114
GLU
114
A
GLN
115
n
115
GLN
115
A
LEU
116
n
116
LEU
116
A
THR
117
n
117
THR
117
A
THR
118
n
118
THR
118
A
HIS
119
n
119
HIS
119
A
PRO
120
n
120
PRO
120
A
PHE
121
n
121
PHE
121
A
LEU
122
n
122
LEU
122
A
GLN
123
n
123
GLN
123
A
ARG
124
n
124
ARG
124
A
VAL
125
n
125
VAL
125
A
GLY
126
n
126
GLY
126
A
PRO
127
n
127
PRO
127
A
ASP
128
n
128
ASP
128
A
VAL
129
n
129
VAL
129
A
LEU
130
n
130
LEU
130
A
ASP
131
n
131
ASP
131
A
PRO
132
n
132
PRO
132
A
ASN
133
n
133
ASN
133
A
LEU
134
n
134
LEU
134
A
THR
135
n
135
THR
135
A
PRO
136
n
136
PRO
136
A
GLU
137
n
137
GLU
137
A
VAL
138
n
138
VAL
138
A
VAL
139
n
139
VAL
139
A
LYS
140
n
140
LYS
140
A
GLU
141
n
141
GLU
141
A
ARG
142
n
142
ARG
142
A
LEU
143
n
143
LEU
143
A
LEU
144
n
144
LEU
144
A
SER
145
n
145
SER
145
A
PRO
146
n
146
PRO
146
A
ARG
147
n
147
ARG
147
A
PHE
148
n
148
PHE
148
A
ARG
149
n
149
ARG
149
A
ASN
150
n
150
ASN
150
A
ARG
151
n
151
ARG
151
A
GLN
152
n
152
GLN
152
A
PHE
153
n
153
PHE
153
A
ALA
154
n
154
ALA
154
A
GLY
155
n
155
GLY
155
A
LEU
156
n
156
LEU
156
A
LEU
157
n
157
LEU
157
A
LEU
158
n
158
LEU
158
A
ASP
159
n
159
ASP
159
A
GLN
160
n
160
GLN
160
A
ALA
161
n
161
ALA
161
A
PHE
162
n
162
PHE
162
A
LEU
163
n
163
LEU
163
A
ALA
164
n
164
ALA
164
A
GLY
165
n
165
GLY
165
A
LEU
166
n
166
LEU
166
A
GLY
167
n
167
GLY
167
A
ASN
168
n
168
ASN
168
A
TYR
169
n
169
TYR
169
A
LEU
170
n
170
LEU
170
A
ARG
171
n
171
ARG
171
A
VAL
172
n
172
VAL
172
A
GLU
173
n
173
GLU
173
A
ILE
174
n
174
ILE
174
A
LEU
175
n
175
LEU
175
A
TRP
176
n
176
TRP
176
A
GLN
177
n
177
GLN
177
A
VAL
178
n
178
VAL
178
A
GLY
179
n
179
GLY
179
A
LEU
180
n
180
LEU
180
A
THR
181
n
181
THR
181
A
GLY
182
n
182
GLY
182
A
ASN
183
n
183
ASN
183
A
HIS
184
n
184
HIS
184
A
LYS
185
n
185
LYS
185
A
ALA
186
n
186
ALA
186
A
LYS
187
n
187
LYS
187
A
ASP
188
n
188
ASP
188
A
LEU
189
n
189
LEU
189
A
ASN
190
n
190
ASN
190
A
ALA
191
n
191
ALA
191
A
ALA
192
n
192
ALA
192
A
GLN
193
n
193
GLN
193
A
LEU
194
n
194
LEU
194
A
ASP
195
n
195
ASP
195
A
ALA
196
n
196
ALA
196
A
LEU
197
n
197
LEU
197
A
ALA
198
n
198
ALA
198
A
HIS
199
n
199
HIS
199
A
ALA
200
n
200
ALA
200
A
LEU
201
n
201
LEU
201
A
LEU
202
n
202
LEU
202
A
GLU
203
n
203
GLU
203
A
ILE
204
n
204
ILE
204
A
PRO
205
n
205
PRO
205
A
ARG
206
n
206
ARG
206
A
PHE
207
n
207
PHE
207
A
SER
208
n
208
SER
208
A
TYR
209
n
209
TYR
209
A
ALA
210
n
210
ALA
210
A
THR
211
n
211
THR
211
A
ARG
212
n
212
ARG
212
A
GLY
213
n
213
GLY
213
A
GLN
214
n
214
GLN
214
A
n
215
215
A
n
216
216
A
n
217
217
A
n
218
218
A
n
219
219
A
n
220
220
A
n
221
221
A
n
222
222
A
ALA
223
n
223
ALA
223
A
LEU
224
n
224
LEU
224
A
PHE
225
n
225
PHE
225
A
ARG
226
n
226
ARG
226
A
PHE
227
n
227
PHE
227
A
LYS
228
n
228
LYS
228
A
VAL
229
n
229
VAL
229
A
PHE
230
n
230
PHE
230
A
HIS
231
n
231
HIS
231
A
ARG
232
n
232
ARG
232
A
ASP
233
n
233
ASP
233
A
GLY
234
n
234
GLY
234
A
GLU
235
n
235
GLU
235
A
PRO
236
n
236
PRO
236
A
CYS
237
n
237
CYS
237
A
GLU
238
n
238
GLU
238
A
ARG
239
n
239
ARG
239
A
CYS
240
n
240
CYS
240
A
GLY
241
n
241
GLY
241
A
SER
242
n
242
SER
242
A
ILE
243
n
243
ILE
243
A
ILE
244
n
244
ILE
244
A
GLU
245
n
245
GLU
245
A
LYS
246
n
246
LYS
246
A
THR
247
n
247
THR
247
A
THR
248
n
248
THR
248
A
LEU
249
n
249
LEU
249
A
SER
250
n
250
SER
250
A
SER
251
n
251
SER
251
A
ARG
252
n
252
ARG
252
A
PRO
253
n
253
PRO
253
A
PHE
254
n
254
PHE
254
A
TYR
255
n
255
TYR
255
A
TRP
256
n
256
TRP
256
A
CYS
257
n
257
CYS
257
A
PRO
258
n
258
PRO
258
A
GLY
259
n
259
GLY
259
A
CYS
260
n
260
CYS
260
A
GLN
261
n
261
GLN
261
A
HIS
262
n
262
HIS
262
A
0.1592000
0.1646000
0.1989000
0.2026000
7422
8521
11.2
11.2
66079
author_defined_assembly
3
trimeric
A
CYS
237
C
SG
CYS
237
1_555
A
ZN
501
D
ZN
ZN
1_555
A
CYS
240
C
SG
CYS
240
1_555
116.1
A
CYS
237
C
SG
CYS
237
1_555
A
ZN
501
D
ZN
ZN
1_555
A
CYS
257
C
SG
CYS
257
1_555
105.9
A
CYS
240
C
SG
CYS
240
1_555
A
ZN
501
D
ZN
ZN
1_555
A
CYS
257
C
SG
CYS
257
1_555
97.2
A
CYS
237
C
SG
CYS
237
1_555
A
ZN
501
D
ZN
ZN
1_555
A
CYS
260
C
SG
CYS
260
1_555
104.9
A
CYS
240
C
SG
CYS
240
1_555
A
ZN
501
D
ZN
ZN
1_555
A
CYS
260
C
SG
CYS
260
1_555
119.9
A
CYS
257
C
SG
CYS
257
1_555
A
ZN
501
D
ZN
ZN
1_555
A
CYS
260
C
SG
CYS
260
1_555
111.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TRP
26
C
N
TRP
26
A
O
LYS
92
C
O
LYS
92
A
N
LEU
93
C
N
LEU
93
A
O
ILE
100
C
O
ILE
100
A
O
TYR
103
C
O
TYR
103
A
N
VAL
73
C
N
VAL
73
A
N
GLU
48
C
N
GLU
48
A
O
LEU
55
C
O
LEU
55
A
N
LEU
54
C
N
LEU
54
A
O
SER
66
C
O
SER
66
A
N
THR
63
C
N
THR
63
A
O
LEU
111
C
O
LEU
111
A
N
THR
247
C
N
THR
247
A
O
PHE
254
C
O
PHE
254
1
A
HOH
846
J
HOH
1
A
HOH
849
J
HOH
1
A
HOH
975
J
HOH
1
B
DG
401
A
DG
1
1
Y
1
B
DG
402
A
DG
2
1
Y
1
B
DC
403
A
DC
3
1
Y
1
B
DT
404
A
DT
4
1
Y
1
B
DG
413
A
DG
13
1
Y
1
C
DC
421
B
DC
1
1
Y
1
C
DC
433
B
DC
13
1
Y
1
A
VAL
215
C
VAL
215
1
Y
1
A
ASP
216
C
ASP
216
1
Y
1
A
GLU
217
C
GLU
217
1
Y
1
A
ASN
218
C
ASN
218
1
Y
1
A
LYS
219
C
LYS
219
1
Y
1
A
HIS
220
C
HIS
220
1
Y
1
A
HIS
221
C
HIS
221
1
Y
1
A
GLY
222
C
GLY
222
1
Y
1
-5.05
0.60
127.20
122.15
B
B
B
C2
N3
C4
DT
DT
DT
405
405
405
N
1
4.18
0.60
118.00
122.18
B
B
B
C4
C5
C6
DT
DT
DT
405
405
405
N
1
-3.80
0.60
123.70
119.90
B
B
B
C5
C6
N1
DT
DT
DT
405
405
405
N
1
5.78
0.60
119.00
124.78
B
B
B
C4
C5
C7
DT
DT
DT
405
405
405
N
1
-9.87
0.60
122.90
113.03
B
B
B
C6
C5
C7
DT
DT
DT
405
405
405
N
1
-4.49
0.70
119.20
114.71
B
B
B
N1
C2
N3
DC
DC
DC
406
406
406
N
1
6.75
0.50
119.90
126.65
B
B
B
C2
N3
C4
DC
DC
DC
406
406
406
N
1
-4.49
0.40
121.90
117.41
B
B
B
N3
C4
C5
DC
DC
DC
406
406
406
N
1
6.39
0.70
121.90
128.29
B
B
B
N3
C2
O2
DC
DC
DC
406
406
406
N
1
4.37
0.70
118.00
122.37
B
B
B
N3
C4
N4
DC
DC
DC
406
406
406
N
1
4.76
0.30
108.30
113.06
B
B
B
O4'
C1'
N9
DA
DA
DA
407
407
407
N
1
3.02
0.50
117.00
120.02
B
B
B
C4
C5
C6
DA
DA
DA
407
407
407
N
1
3.17
0.50
103.90
107.07
B
B
B
C5
N7
C8
DA
DA
DA
407
407
407
N
1
-4.85
0.70
108.00
103.15
B
B
B
O4'
C1'
N1
DT
DT
DT
408
408
408
N
1
-4.43
0.60
127.20
122.77
B
B
B
C2
N3
C4
DT
DT
DT
408
408
408
N
1
-4.52
0.60
122.30
117.78
B
B
B
N3
C2
O2
DT
DT
DT
408
408
408
N
1
7.28
1.20
119.70
126.98
B
B
B
C3'
O3'
P
DT
DT
DC
408
408
409
Y
1
-4.83
0.70
108.00
103.17
B
B
B
O4'
C1'
N1
DC
DC
DC
409
409
409
N
1
-5.08
0.70
119.20
114.12
B
B
B
N1
C2
N3
DC
DC
DC
409
409
409
N
1
8.83
0.50
119.90
128.73
B
B
B
C2
N3
C4
DC
DC
DC
409
409
409
N
1
-7.02
0.40
121.90
114.88
B
B
B
N3
C4
C5
DC
DC
DC
409
409
409
N
1
-3.78
0.60
118.90
115.12
B
B
B
N1
C2
O2
DC
DC
DC
409
409
409
N
1
8.84
0.70
121.90
130.74
B
B
B
N3
C2
O2
DC
DC
DC
409
409
409
N
1
6.00
0.70
118.00
124.00
B
B
B
N3
C4
N4
DC
DC
DC
409
409
409
N
1
7.61
1.10
110.50
118.11
B
B
B
O3'
P
OP2
DC
DC
DC
409
410
410
Y
1
2.66
0.30
108.30
110.96
B
B
B
O4'
C1'
N1
DC
DC
DC
410
410
410
N
1
-5.87
0.70
119.20
113.33
B
B
B
N1
C2
N3
DC
DC
DC
410
410
410
N
1
7.92
0.50
119.90
127.82
B
B
B
C2
N3
C4
DC
DC
DC
410
410
410
N
1
-4.56
0.40
121.90
117.34
B
B
B
N3
C4
C5
DC
DC
DC
410
410
410
N
1
5.83
0.70
118.00
123.83
B
B
B
N3
C4
N4
DC
DC
DC
410
410
410
N
1
9.45
1.20
119.70
129.15
B
B
B
C3'
O3'
P
DC
DC
DT
410
410
411
Y
1
4.93
0.30
108.30
113.23
B
B
B
O4'
C1'
N1
DT
DT
DT
411
411
411
N
1
4.79
0.60
114.60
119.39
B
B
B
N1
C2
N3
DT
DT
DT
411
411
411
N
1
-8.06
0.60
127.20
119.14
B
B
B
C2
N3
C4
DT
DT
DT
411
411
411
N
1
5.42
0.60
118.00
123.42
B
B
B
C4
C5
C6
DT
DT
DT
411
411
411
N
1
-4.94
0.60
123.70
118.76
B
B
B
C5
C6
N1
DT
DT
DT
411
411
411
N
1
-4.08
0.60
122.30
118.22
B
B
B
N3
C2
O2
DT
DT
DT
411
411
411
N
1
-7.33
0.60
122.90
115.57
B
B
B
C6
C5
C7
DT
DT
DT
411
411
411
N
1
17.76
1.20
119.70
137.46
B
B
B
C3'
O3'
P
DT
DT
DG
411
411
412
Y
1
-7.70
0.60
125.10
117.40
B
B
B
C6
N1
C2
DG
DG
DG
412
412
412
N
1
8.66
0.50
111.90
120.56
B
B
B
C2
N3
C4
DG
DG
DG
412
412
412
N
1
-10.21
0.50
128.60
118.39
B
B
B
N3
C4
C5
DG
DG
DG
412
412
412
N
1
5.66
0.50
111.50
117.16
B
B
B
C5
C6
N1
DG
DG
DG
412
412
412
N
1
-5.14
0.50
104.30
99.16
B
B
B
C5
N7
C8
DG
DG
DG
412
412
412
N
1
9.82
0.50
113.10
122.92
B
B
B
N7
C8
N9
DG
DG
DG
412
412
412
N
1
-7.69
0.40
106.40
98.71
B
B
B
C8
N9
C4
DG
DG
DG
412
412
412
N
1
3.52
0.40
105.40
108.92
B
B
B
N9
C4
C5
DG
DG
DG
412
412
412
N
1
6.69
0.60
126.00
132.69
B
B
B
N3
C4
N9
DG
DG
DG
412
412
412
N
1
-8.85
0.40
104.50
95.65
C
C
C
O4'
C4'
C3'
DC
DC
DC
422
422
422
N
1
-7.56
1.00
110.10
102.54
C
C
C
C1'
O4'
C4'
DC
DC
DC
422
422
422
N
1
-5.78
0.70
102.20
96.42
C
C
C
C4'
C3'
C2'
DC
DC
DC
422
422
422
N
1
1.84
0.30
108.30
110.14
C
C
C
O4'
C1'
N1
DC
DC
DC
422
422
422
N
1
7.75
0.50
119.90
127.65
C
C
C
C2
N3
C4
DC
DC
DC
422
422
422
N
1
-6.95
0.40
121.90
114.95
C
C
C
N3
C4
C5
DC
DC
DC
422
422
422
N
1
6.22
0.70
121.90
128.12
C
C
C
N3
C2
O2
DC
DC
DC
422
422
422
N
1
4.24
0.70
120.20
124.44
C
C
C
C5
C4
N4
DC
DC
DC
422
422
422
N
1
9.11
1.20
120.80
129.91
C
C
C
C6
N1
C1'
DC
DC
DC
422
422
422
N
1
-7.34
1.10
118.80
111.46
C
C
C
C2
N1
C1'
DC
DC
DC
422
422
422
N
1
-4.66
0.70
102.20
97.54
C
C
C
C4'
C3'
C2'
DA
DA
DA
423
423
423
N
1
11.67
0.30
108.30
119.97
C
C
C
O4'
C1'
N9
DA
DA
DA
423
423
423
N
1
4.04
0.60
118.60
122.64
C
C
C
C6
N1
C2
DA
DA
DA
423
423
423
N
1
-3.48
0.50
117.70
114.22
C
C
C
C5
C6
N1
DA
DA
DA
423
423
423
N
1
13.47
1.20
119.70
133.17
C
C
C
C3'
O3'
P
DA
DA
DG
423
423
424
Y
1
-6.03
0.60
125.10
119.07
C
C
C
C6
N1
C2
DG
DG
DG
424
424
424
N
1
6.46
0.50
111.90
118.36
C
C
C
C2
N3
C4
DG
DG
DG
424
424
424
N
1
-7.26
0.50
128.60
121.34
C
C
C
N3
C4
C5
DG
DG
DG
424
424
424
N
1
5.31
0.50
111.50
116.81
C
C
C
C5
C6
N1
DG
DG
DG
424
424
424
N
1
-5.66
0.50
104.30
98.64
C
C
C
C5
N7
C8
DG
DG
DG
424
424
424
N
1
8.78
0.50
113.10
121.88
C
C
C
N7
C8
N9
DG
DG
DG
424
424
424
N
1
-5.74
0.40
106.40
100.66
C
C
C
C8
N9
C4
DG
DG
DG
424
424
424
N
1
5.82
0.60
126.00
131.82
C
C
C
N3
C4
N9
DG
DG
DG
424
424
424
N
1
-5.74
0.60
128.60
122.86
C
C
C
C5
C6
O6
DG
DG
DG
424
424
424
N
1
9.37
1.30
127.00
136.37
C
C
C
C8
N9
C1'
DG
DG
DG
424
424
424
N
1
-5.48
0.60
125.10
119.62
C
C
C
C6
N1
C2
DG
DG
DG
425
425
425
N
1
6.96
0.50
111.90
118.86
C
C
C
C2
N3
C4
DG
DG
DG
425
425
425
N
1
-7.65
0.50
128.60
120.95
C
C
C
N3
C4
C5
DG
DG
DG
425
425
425
N
1
4.86
0.50
111.50
116.36
C
C
C
C5
C6
N1
DG
DG
DG
425
425
425
N
1
-5.40
0.50
104.30
98.90
C
C
C
C5
N7
C8
DG
DG
DG
425
425
425
N
1
9.02
0.50
113.10
122.12
C
C
C
N7
C8
N9
DG
DG
DG
425
425
425
N
1
-6.21
0.40
106.40
100.19
C
C
C
C8
N9
C4
DG
DG
DG
425
425
425
N
1
5.29
0.60
126.00
131.29
C
C
C
N3
C4
N9
DG
DG
DG
425
425
425
N
1
-4.69
0.60
128.60
123.91
C
C
C
C5
C6
O6
DG
DG
DG
425
425
425
N
1
-3.37
0.40
104.50
101.13
C
C
C
O4'
C4'
C3'
DA
DA
DA
426
426
426
N
1
3.28
0.50
117.00
120.28
C
C
C
C4
C5
C6
DA
DA
DA
426
426
426
N
1
-3.50
0.50
117.70
114.20
C
C
C
C5
C6
N1
DA
DA
DA
426
426
426
N
1
-5.40
0.70
108.00
102.60
C
C
C
O4'
C1'
N9
DG
DG
DG
428
428
428
N
1
-4.88
0.60
125.10
120.22
C
C
C
C6
N1
C2
DG
DG
DG
428
428
428
N
1
4.39
0.50
111.90
116.29
C
C
C
C2
N3
C4
DG
DG
DG
428
428
428
N
1
-5.71
0.50
128.60
122.89
C
C
C
N3
C4
C5
DG
DG
DG
428
428
428
N
1
4.77
0.50
111.50
116.27
C
C
C
C5
C6
N1
DG
DG
DG
428
428
428
N
1
-4.39
0.50
104.30
99.91
C
C
C
C5
N7
C8
DG
DG
DG
428
428
428
N
1
6.51
0.50
113.10
119.61
C
C
C
N7
C8
N9
DG
DG
DG
428
428
428
N
1
-4.44
0.40
106.40
101.96
C
C
C
C8
N9
C4
DG
DG
DG
428
428
428
N
1
3.72
0.60
126.00
129.72
C
C
C
N3
C4
N9
DG
DG
DG
428
428
428
N
1
-3.97
0.60
128.60
124.63
C
C
C
C5
C6
O6
DG
DG
DG
428
428
428
N
1
-6.05
1.00
110.10
104.05
C
C
C
C1'
O4'
C4'
DA
DA
DA
429
429
429
N
1
-6.05
0.80
105.90
99.85
C
C
C
O4'
C1'
C2'
DA
DA
DA
429
429
429
N
1
-6.19
0.70
108.00
101.81
C
C
C
O4'
C1'
N9
DA
DA
DA
429
429
429
N
1
7.55
0.60
118.60
126.15
C
C
C
C6
N1
C2
DA
DA
DA
429
429
429
N
1
-7.27
0.50
129.30
122.03
C
C
C
N1
C2
N3
DA
DA
DA
429
429
429
N
1
-3.87
0.50
117.70
113.83
C
C
C
C5
C6
N1
DA
DA
DA
429
429
429
N
1
6.35
0.30
108.30
114.65
C
C
C
O4'
C1'
N9
DA
DA
DA
430
430
430
N
1
3.12
0.50
106.80
109.92
C
C
C
O4'
C1'
C2'
DG
DG
DG
431
431
431
N
1
-6.89
0.60
125.10
118.21
C
C
C
C6
N1
C2
DG
DG
DG
431
431
431
N
1
6.39
0.50
111.90
118.29
C
C
C
C2
N3
C4
DG
DG
DG
431
431
431
N
1
-7.51
0.50
128.60
121.09
C
C
C
N3
C4
C5
DG
DG
DG
431
431
431
N
1
5.44
0.50
111.50
116.94
C
C
C
C5
C6
N1
DG
DG
DG
431
431
431
N
1
-6.29
0.50
104.30
98.01
C
C
C
C5
N7
C8
DG
DG
DG
431
431
431
N
1
9.63
0.50
113.10
122.73
C
C
C
N7
C8
N9
DG
DG
DG
431
431
431
N
1
-6.36
0.40
106.40
100.04
C
C
C
C8
N9
C4
DG
DG
DG
431
431
431
N
1
5.86
0.60
126.00
131.86
C
C
C
N3
C4
N9
DG
DG
DG
431
431
431
N
1
-5.63
0.60
128.60
122.97
C
C
C
C5
C6
O6
DG
DG
DG
431
431
431
N
1
9.46
1.30
127.00
136.46
C
C
C
C8
N9
C1'
DG
DG
DG
431
431
431
N
1
32.02
1.10
110.50
142.52
C
C
C
O3'
P
OP1
DG
DC
DC
431
432
432
Y
1
-4.51
0.70
119.20
114.69
C
C
C
N1
C2
N3
DC
DC
DC
432
432
432
N
1
6.78
0.50
119.90
126.68
C
C
C
C2
N3
C4
DC
DC
DC
432
432
432
N
1
-4.47
0.40
121.90
117.43
C
C
C
N3
C4
C5
DC
DC
DC
432
432
432
N
1
6.37
0.70
121.90
128.27
C
C
C
N3
C2
O2
DC
DC
DC
432
432
432
N
1
4.40
0.70
118.00
122.40
C
C
C
N3
C4
N4
DC
DC
DC
432
432
432
N
1
11.69
1.70
113.60
125.29
A
A
A
CA
CB
CG
HIS
HIS
HIS
46
46
46
B
B
N
1
4.98
0.60
121.00
125.98
A
A
A
CB
CG
CD1
TYR
TYR
TYR
65
65
65
N
1
-3.95
0.60
121.00
117.05
A
A
A
CB
CG
CD2
TYR
TYR
TYR
71
71
71
N
1
8.45
1.40
123.60
132.05
A
A
A
CD
NE
CZ
ARG
ARG
ARG
124
124
124
A
A
A
N
1
4.18
0.50
120.30
124.48
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
142
142
142
N
1
-3.11
0.50
120.30
117.19
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
142
142
142
N
1
5.20
0.60
121.00
126.20
A
A
A
CB
CG
CD1
TYR
TYR
TYR
169
169
169
N
1
6.34
0.80
121.30
127.64
A
A
A
CG
CD1
CE1
TYR
TYR
TYR
169
169
169
N
1
-10.91
1.60
122.70
111.79
A
A
A
O
C
N
ASN
ASN
HIS
183
183
184
Y
1
3.34
0.50
120.30
123.64
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
212
212
212
B
B
B
N
1
3.96
0.50
120.30
124.26
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
239
239
239
N
1
-6.02
0.50
120.30
114.28
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
239
239
239
N
1
3.45
0.50
120.30
123.75
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
252
252
252
N
1
-4.18
0.50
120.30
116.12
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
252
252
252
N
1
B
B
C2
N3
DT
DT
405
405
0.061
0.008
1.373
1.434
N
1
B
B
C5
C7
DT
DT
405
405
0.100
0.006
1.496
1.596
N
1
B
B
C2
N3
DT
DT
408
408
0.055
0.008
1.373
1.428
N
1
B
B
C5
C7
DT
DT
408
408
0.088
0.006
1.496
1.584
N
1
B
B
C2
N3
DT
DT
411
411
0.082
0.008
1.373
1.455
N
1
B
B
C5
C7
DT
DT
411
411
0.105
0.006
1.496
1.601
N
1
B
B
C4
C5
DG
DG
412
412
0.049
0.007
1.379
1.428
N
1
C
C
N3
C4
DG
DG
428
428
0.045
0.007
1.350
1.395
N
1
C
C
O3'
P
DG
DC
431
432
-0.090
0.012
1.607
1.517
Y
1
A
GLN
69
50.12
-129.17
1
A
GLU
82
-159.17
87.89
1
A
SER
104
72.16
-29.73
1
A
PHE
162
-83.09
-74.33
1
A
THR
247
-137.44
-156.91
0.2026000
0.1646000
1.42
10.00
25384
8521
76108
76108
31207
11.2
95.2
RANDOM
1
FREE R
0.0
initial MODEL OF BR-URACIL-CONTAINING DNA COMPLEXED WITH ENDONUCLEASE VIII AT 2.4A RESOLUTION
ENGH & HUBER
MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228
338
0.00
2830.41
1.42
10.00
397
2874
16
381
2080
0.014
0.035
0.000
0.0255
0.060
0.070
0.022
0.004
0.039
0.092
0.2020000
0.1640000
1.44
8521
11
1.42
40.0
1K3W
86586
0.0830000
1
8.9
5.5
95.2
1.42
1.44
3191
0.3750000
2
71.4
refinement
SHELXL-97
data scaling
SCALEPACK
refinement
CNS
data reduction
DENZO
phasing
CNS
Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNA
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
A
GLU
2
C
GLU
2
HELX_P
A
LYS
18
C
LYS
18
1
1
17
A
PHE
29
C
PHE
29
HELX_P
A
LYS
33
C
LYS
33
5
2
5
A
THR
34
C
THR
34
HELX_P
A
ILE
40
C
ILE
40
1
3
7
A
GLU
114
C
GLU
114
HELX_P
A
HIS
119
C
HIS
119
1
4
6
A
HIS
119
C
HIS
119
HELX_P
A
VAL
125
C
VAL
125
1
5
7
A
THR
135
C
THR
135
HELX_P
A
SER
145
C
SER
145
1
6
11
A
GLN
152
C
GLN
152
HELX_P
A
LEU
157
C
LEU
157
1
7
6
A
GLY
167
C
GLY
167
HELX_P
A
VAL
178
C
VAL
178
1
8
12
A
LYS
185
C
LYS
185
HELX_P
A
LEU
189
C
LEU
189
5
9
5
A
ASN
190
C
ASN
190
HELX_P
A
ARG
212
C
ARG
212
1
10
23
covale
1.627
one
C
DA
426
B
O3'
DA
6
1_555
C
PED
427
B
P
PED
7
1_555
covale
1.603
one
C
PED
427
B
O3'
PED
7
1_555
C
DG
428
B
P
DG
8
1_555
covale
1.434
one
C
PED
427
B
C1'
PED
7
1_555
A
PRO
1
C
N
PRO
1
1_555
metalc
2.394
A
CYS
237
C
SG
CYS
237
1_555
A
ZN
501
D
ZN
ZN
1_555
metalc
2.310
A
CYS
240
C
SG
CYS
240
1_555
A
ZN
501
D
ZN
ZN
1_555
metalc
2.337
A
CYS
257
C
SG
CYS
257
1_555
A
ZN
501
D
ZN
ZN
1_555
metalc
2.328
A
CYS
260
C
SG
CYS
260
1_555
A
ZN
501
D
ZN
ZN
1_555
hydrog
WATSON-CRICK
B
DT
405
A
N3
DT
5
1_555
C
DA
429
B
N1
DA
9
1_555
hydrog
WATSON-CRICK
B
DT
405
A
O4
DT
5
1_555
C
DA
429
B
N6
DA
9
1_555
hydrog
WATSON-CRICK
B
DC
406
A
N3
DC
6
1_555
C
DG
428
B
N1
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
406
A
N4
DC
6
1_555
C
DG
428
B
O6
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
406
A
O2
DC
6
1_555
C
DG
428
B
N2
DG
8
1_555
hydrog
WATSON-CRICK
B
DT
408
A
N3
DT
8
1_555
C
DA
426
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
B
DT
408
A
O4
DT
8
1_555
C
DA
426
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
B
DC
409
A
N3
DC
9
1_555
C
DG
425
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
409
A
N4
DC
9
1_555
C
DG
425
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
409
A
O2
DC
9
1_555
C
DG
425
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
410
A
N3
DC
10
1_555
C
DG
424
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
410
A
N4
DC
10
1_555
C
DG
424
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
410
A
O2
DC
10
1_555
C
DG
424
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
B
DT
411
A
N3
DT
11
1_555
C
DA
423
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
B
DT
411
A
O4
DT
11
1_555
C
DA
423
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
B
DG
412
A
N1
DG
12
1_555
C
DC
422
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
412
A
N2
DG
12
1_555
C
DC
422
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
412
A
O6
DG
12
1_555
C
DC
422
B
N4
DC
2
1_555
HYDROLASE/DNA
HYDROLASE/DNA, HYDROLASE-DNA complex
END8_ECOLI
UNP
3
1
P50465
PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKPYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG
EEPQTTRVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ
AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC
GSIIEKTTLSSRPFYWCPGCQH
1K3W
PDB
1
1K3W
1K3W
PDB
2
1K3W
1
262
1K3W
1
262
P50465
A
1
1
262
401
413
1K3W
401
413
1K3W
B
2
1
13
421
433
1K3W
421
433
1K3W
C
3
1
13
1
PRO
SEE REMARK 999
THR
34
1K3W
A
P50465
UNP
34
34
1
THR
SEE REMARK 999
ARG
112
1K3W
A
P50465
UNP
112
112
4
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ASP
24
C
ASP
24
A
PHE
27
C
PHE
27
A
LEU
89
C
LEU
89
A
GLN
94
C
GLN
94
A
LYS
98
C
LYS
98
A
TYR
103
C
TYR
103
A
VAL
73
C
VAL
73
A
ASP
78
C
ASP
78
A
VAL
44
C
VAL
44
A
ARG
50
C
ARG
50
A
ALA
53
C
ALA
53
A
PHE
58
C
PHE
58
A
THR
63
C
THR
63
A
HIS
67
C
HIS
67
A
ASP
107
C
ASP
107
A
LEU
111
C
LEU
111
A
GLU
245
C
GLU
245
A
LEU
249
C
LEU
249
A
ARG
252
C
ARG
252
A
TRP
256
C
TRP
256
BINDING SITE FOR RESIDUE ZN A 501
A
ZN
501
Software
4
BINDING SITE FOR RESIDUE SO4 A 551
A
SO4
551
Software
6
BINDING SITE FOR RESIDUE SO4 A 552
A
SO4
552
Software
8
BINDING SITE FOR RESIDUE SO4 A 553
A
SO4
553
Software
6
A
CYS
237
C
CYS
237
4
1_555
A
CYS
240
C
CYS
240
4
1_555
A
CYS
257
C
CYS
257
4
1_555
A
CYS
260
C
CYS
260
4
1_555
A
ARG
8
C
ARG
8
6
1_555
A
ASN
12
C
ASN
12
6
1_555
A
GLY
213
C
GLY
213
6
1_555
A
HOH
627
J
HOH
6
1_555
A
HOH
906
J
HOH
6
1_555
A
HOH
918
J
HOH
6
1_555
A
ARG
112
C
ARG
112
8
4_665
A
LYS
140
C
LYS
140
8
1_555
A
ALA
191
C
ALA
191
8
1_555
A
ASP
195
C
ASP
195
8
1_555
A
HOH
636
J
HOH
8
1_555
A
HOH
863
J
HOH
8
1_555
A
HOH
909
J
HOH
8
1_555
A
HOH
938
J
HOH
8
8_663
A
ASN
190
C
ASN
190
6
1_555
A
ALA
191
C
ALA
191
6
1_555
A
HOH
610
J
HOH
6
4_665
A
HOH
866
J
HOH
6
1_555
A
HOH
915
J
HOH
6
4_665
A
HOH
946
J
HOH
6
4_665
95
P 43 2 2