0.020877
0.000000
0.000000
0.000000
0.008285
0.000000
0.000000
0.000000
0.020492
0.00000
0.00000
0.00000
Smith, C.L.
Khandelwal, P.
Keliikuli, K.
Zuiderweg, E.R.P.
Saper, M.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
47.900
120.700
48.800
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
O
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
R
C
N
292
N
O
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
N
315
N
O
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
Y
300
N
doub
Y
301
N
sing
Y
302
N
sing
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
UK
Mol.Microbiol.
MOMIEE
2007
0950-382X
42
967
979
10.1046/j.0950-382x.2001.02711.x
11737640
Structure of the type III secretion and substrate-binding domain of Yersinia YopH phosphatase.
2001
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
276
5005
5011
10.1074/jbc.M009045200
Identification of Residues in the N-terminal Domain of the Yersinia Tyrosine Phosphatase that are Critical for Substrate Recognition
2001
UK
Mol.Microbiol.
MOMIEE
2007
0950-382X
29
1263
1274
10.1046/j.1365-2958.1998.01014.x
Identification of an Amino-terminal Substrate-binding Domain in the Yersinia Tyrosine Phosphatase that is Required for Efficient Recognition of Focal Adhesion Targets
1998
10.2210/pdb1k46/pdb
pdb_00001k46
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
120
1
mirrors
IMAGE PLATE
1998-08-11
RIGAKU RAXIS IV
Yale double focusing mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH3R
14882.599
PROTEIN-TYROSINE PHOSPHATASE YOPH
3.1.3.48
amino-terminal domain (residues 1-129)
1
man
polymer
18.015
water
110
nat
water
YopH phosphatase
no
no
MNLSLSDLHRQVSRLVQQESGDCTGKLRGNVAANKETTFQGLTIASGARESEKVFAQTVLSHVANVVLTQEDTAKLLQST
VKHNLNNYDLRSVGNGNSVLVSLRSDQMTLQDAKVLLEAALRQESGARGSHHHHHH
MNLSLSDLHRQVSRLVQQESGDCTGKLRGNVAANKETTFQGLTIASGARESEKVFAQTVLSHVANVVLTQEDTAKLLQST
VKHNLNNYDLRSVGNGNSVLVSLRSDQMTLQDAKVLLEAALRQESGARGSHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Yersinia
Escherichia
Escherichia coli
sample
yopH
633
Yersinia pseudotuberculosis
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pT7-7
1
2.37
48.09
VAPOR DIFFUSION, HANGING DROP
8
PEG 8000, sodium chlolride, Tris , VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Refinement description
1
0
2001-11-28
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
1
4
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
1huf is AN ISOMORPHOUS CRYSTAL STRUCTURE INTERPRETED AS A MONOMER WITHOUT A DOMAIN-SWAP.
BIOMOLECULE: 1
THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC
UNIT WHICH CONSISTS OF 1 CHAIN(S). THIS IS LIKELY THE
BIOLOGICALLY-RELEVANT STRUCTURE. THE RELEVANCE OF THE
DOMAIN-SWAPPED DIMER OBSERVED IN THE CRYSTAL STRUCTURE
IS DESCRIBED IN THE JRNL REFERENCE. ALSO SEE REMARK
900. THE OTHER MOLECULE OF THE DOMAIN-SWAPPED DIMER IS
GENERATED BY APPLYING CRYSTALLOGRAPHIC OPERATOR 3
IN REMARK 290 FOLLOWED BY A TRANSLATION OF 47.90 IN X.
RCSB
Y
RCSB
2001-10-05
REL
REL
HOH
water
de novo
Other
in silico model
WAT
370
2
HOH
HOH
370
A
WAT
371
2
HOH
HOH
371
A
WAT
372
2
HOH
HOH
372
A
WAT
373
2
HOH
HOH
373
A
WAT
374
2
HOH
HOH
374
A
WAT
375
2
HOH
HOH
375
A
WAT
376
2
HOH
HOH
376
A
WAT
377
2
HOH
HOH
377
A
WAT
378
2
HOH
HOH
378
A
WAT
379
2
HOH
HOH
379
A
WAT
380
2
HOH
HOH
380
A
WAT
381
2
HOH
HOH
381
A
WAT
382
2
HOH
HOH
382
A
WAT
383
2
HOH
HOH
383
A
WAT
384
2
HOH
HOH
384
A
WAT
385
2
HOH
HOH
385
A
WAT
386
2
HOH
HOH
386
A
WAT
387
2
HOH
HOH
387
A
WAT
388
2
HOH
HOH
388
A
WAT
389
2
HOH
HOH
389
A
WAT
390
2
HOH
HOH
390
A
WAT
391
2
HOH
HOH
391
A
WAT
392
2
HOH
HOH
392
A
WAT
393
2
HOH
HOH
393
A
WAT
394
2
HOH
HOH
394
A
WAT
395
2
HOH
HOH
395
A
WAT
396
2
HOH
HOH
396
A
WAT
397
2
HOH
HOH
397
A
WAT
398
2
HOH
HOH
398
A
WAT
399
2
HOH
HOH
399
A
WAT
400
2
HOH
HOH
400
A
WAT
401
2
HOH
HOH
401
A
WAT
402
2
HOH
HOH
402
A
WAT
403
2
HOH
HOH
403
A
WAT
404
2
HOH
HOH
404
A
WAT
405
2
HOH
HOH
405
A
WAT
406
2
HOH
HOH
406
A
WAT
407
2
HOH
HOH
407
A
WAT
408
2
HOH
HOH
408
A
WAT
409
2
HOH
HOH
409
A
WAT
410
2
HOH
HOH
410
A
WAT
411
2
HOH
HOH
411
A
WAT
412
2
HOH
HOH
412
A
WAT
413
2
HOH
HOH
413
A
WAT
414
2
HOH
HOH
414
A
WAT
415
2
HOH
HOH
415
A
WAT
416
2
HOH
HOH
416
A
WAT
417
2
HOH
HOH
417
A
WAT
418
2
HOH
HOH
418
A
WAT
419
2
HOH
HOH
419
A
WAT
420
2
HOH
HOH
420
A
WAT
421
2
HOH
HOH
421
A
WAT
422
2
HOH
HOH
422
A
WAT
423
2
HOH
HOH
423
A
WAT
424
2
HOH
HOH
424
A
WAT
425
2
HOH
HOH
425
A
WAT
426
2
HOH
HOH
426
A
WAT
427
2
HOH
HOH
427
A
WAT
428
2
HOH
HOH
428
A
WAT
429
2
HOH
HOH
429
A
WAT
430
2
HOH
HOH
430
A
WAT
431
2
HOH
HOH
431
A
WAT
432
2
HOH
HOH
432
A
WAT
433
2
HOH
HOH
433
A
WAT
434
2
HOH
HOH
434
A
WAT
435
2
HOH
HOH
435
A
WAT
436
2
HOH
HOH
436
A
WAT
437
2
HOH
HOH
437
A
WAT
438
2
HOH
HOH
438
A
WAT
439
2
HOH
HOH
439
A
WAT
440
2
HOH
HOH
440
A
WAT
441
2
HOH
HOH
441
A
WAT
442
2
HOH
HOH
442
A
WAT
443
2
HOH
HOH
443
A
WAT
444
2
HOH
HOH
444
A
WAT
445
2
HOH
HOH
445
A
WAT
446
2
HOH
HOH
446
A
WAT
447
2
HOH
HOH
447
A
WAT
448
2
HOH
HOH
448
A
WAT
449
2
HOH
HOH
449
A
WAT
450
2
HOH
HOH
450
A
WAT
451
2
HOH
HOH
451
A
WAT
452
2
HOH
HOH
452
A
WAT
453
2
HOH
HOH
453
A
WAT
454
2
HOH
HOH
454
A
WAT
455
2
HOH
HOH
455
A
WAT
456
2
HOH
HOH
456
A
WAT
457
2
HOH
HOH
457
A
WAT
458
2
HOH
HOH
458
A
WAT
459
2
HOH
HOH
459
A
WAT
460
2
HOH
HOH
460
A
WAT
461
2
HOH
HOH
461
A
WAT
462
2
HOH
HOH
462
A
WAT
463
2
HOH
HOH
463
A
WAT
464
2
HOH
HOH
464
A
WAT
465
2
HOH
HOH
465
A
WAT
466
2
HOH
HOH
466
A
WAT
467
2
HOH
HOH
467
A
WAT
468
2
HOH
HOH
468
A
WAT
469
2
HOH
HOH
469
A
WAT
470
2
HOH
HOH
470
A
WAT
471
2
HOH
HOH
471
A
WAT
472
2
HOH
HOH
472
A
WAT
473
2
HOH
HOH
473
A
WAT
474
2
HOH
HOH
474
A
WAT
475
2
HOH
HOH
475
A
WAT
476
2
HOH
HOH
476
A
WAT
477
2
HOH
HOH
477
A
WAT
478
2
HOH
HOH
478
A
WAT
479
2
HOH
HOH
479
A
n
1
1
A
ASN
2
n
2
ASN
2
A
LEU
3
n
3
LEU
3
A
SER
4
n
4
SER
4
A
LEU
5
n
5
LEU
5
A
SER
6
n
6
SER
6
A
ASP
7
n
7
ASP
7
A
LEU
8
n
8
LEU
8
A
HIS
9
n
9
HIS
9
A
ARG
10
n
10
ARG
10
A
GLN
11
n
11
GLN
11
A
VAL
12
n
12
VAL
12
A
SER
13
n
13
SER
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
VAL
16
n
16
VAL
16
A
GLN
17
n
17
GLN
17
A
GLN
18
n
18
GLN
18
A
GLU
19
n
19
GLU
19
A
SER
20
n
20
SER
20
A
GLY
21
n
21
GLY
21
A
ASP
22
n
22
ASP
22
A
CYS
23
n
23
CYS
23
A
THR
24
n
24
THR
24
A
GLY
25
n
25
GLY
25
A
LYS
26
n
26
LYS
26
A
LEU
27
n
27
LEU
27
A
ARG
28
n
28
ARG
28
A
GLY
29
n
29
GLY
29
A
ASN
30
n
30
ASN
30
A
VAL
31
n
31
VAL
31
A
ALA
32
n
32
ALA
32
A
ALA
33
n
33
ALA
33
A
ASN
34
n
34
ASN
34
A
LYS
35
n
35
LYS
35
A
GLU
36
n
36
GLU
36
A
THR
37
n
37
THR
37
A
THR
38
n
38
THR
38
A
PHE
39
n
39
PHE
39
A
GLN
40
n
40
GLN
40
A
GLY
41
n
41
GLY
41
A
LEU
42
n
42
LEU
42
A
THR
43
n
43
THR
43
A
ILE
44
n
44
ILE
44
A
ALA
45
n
45
ALA
45
A
SER
46
n
46
SER
46
A
GLY
47
n
47
GLY
47
A
ALA
48
n
48
ALA
48
A
ARG
49
n
49
ARG
49
A
GLU
50
n
50
GLU
50
A
SER
51
n
51
SER
51
A
GLU
52
n
52
GLU
52
A
LYS
53
n
53
LYS
53
A
VAL
54
n
54
VAL
54
A
PHE
55
n
55
PHE
55
A
ALA
56
n
56
ALA
56
A
GLN
57
n
57
GLN
57
A
THR
58
n
58
THR
58
A
VAL
59
n
59
VAL
59
A
LEU
60
n
60
LEU
60
A
SER
61
n
61
SER
61
A
HIS
62
n
62
HIS
62
A
VAL
63
n
63
VAL
63
A
ALA
64
n
64
ALA
64
A
ASN
65
n
65
ASN
65
A
VAL
66
n
66
VAL
66
A
VAL
67
n
67
VAL
67
A
LEU
68
n
68
LEU
68
A
THR
69
n
69
THR
69
A
GLN
70
n
70
GLN
70
A
GLU
71
n
71
GLU
71
A
ASP
72
n
72
ASP
72
A
THR
73
n
73
THR
73
A
ALA
74
n
74
ALA
74
A
LYS
75
n
75
LYS
75
A
LEU
76
n
76
LEU
76
A
LEU
77
n
77
LEU
77
A
GLN
78
n
78
GLN
78
A
SER
79
n
79
SER
79
A
THR
80
n
80
THR
80
A
VAL
81
n
81
VAL
81
A
LYS
82
n
82
LYS
82
A
HIS
83
n
83
HIS
83
A
ASN
84
n
84
ASN
84
A
LEU
85
n
85
LEU
85
A
ASN
86
n
86
ASN
86
A
ASN
87
n
87
ASN
87
A
TYR
88
n
88
TYR
88
A
ASP
89
n
89
ASP
89
A
LEU
90
n
90
LEU
90
A
ARG
91
n
91
ARG
91
A
SER
92
n
92
SER
92
A
VAL
93
n
93
VAL
93
A
GLY
94
n
94
GLY
94
A
ASN
95
n
95
ASN
95
A
GLY
96
n
96
GLY
96
A
ASN
97
n
97
ASN
97
A
SER
98
n
98
SER
98
A
VAL
99
n
99
VAL
99
A
LEU
100
n
100
LEU
100
A
VAL
101
n
101
VAL
101
A
SER
102
n
102
SER
102
A
LEU
103
n
103
LEU
103
A
ARG
104
n
104
ARG
104
A
SER
105
n
105
SER
105
A
ASP
106
n
106
ASP
106
A
GLN
107
n
107
GLN
107
A
MET
108
n
108
MET
108
A
THR
109
n
109
THR
109
A
LEU
110
n
110
LEU
110
A
GLN
111
n
111
GLN
111
A
ASP
112
n
112
ASP
112
A
ALA
113
n
113
ALA
113
A
LYS
114
n
114
LYS
114
A
VAL
115
n
115
VAL
115
A
LEU
116
n
116
LEU
116
A
LEU
117
n
117
LEU
117
A
GLU
118
n
118
GLU
118
A
ALA
119
n
119
ALA
119
A
ALA
120
n
120
ALA
120
A
LEU
121
n
121
LEU
121
A
ARG
122
n
122
ARG
122
A
GLN
123
n
123
GLN
123
A
GLU
124
n
124
GLU
124
A
SER
125
n
125
SER
125
A
n
126
126
A
n
127
127
A
n
128
128
A
n
129
129
A
n
130
130
A
n
131
131
A
n
132
132
A
n
133
133
A
n
134
134
A
n
135
135
A
n
136
136
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA,PQS
2
dimeric
5070
-34
12080
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_655
-x+1,y,-z+1/2
crystal symmetry operation
47.9000000000
0.0000000000
24.4000000000
A
N
LEU
68
A
N
LEU
68
A
O
SER
98
A
O
SER
98
A
O
VAL
99
A
O
VAL
99
A
N
ARG
91
A
N
ARG
91
1
A
MET
1
A
MET
1
1
Y
1
A
GLY
94
A
GLY
94
0
Y
1
A
ASN
95
A
ASN
95
0
Y
1
A
GLY
126
A
GLY
126
1
Y
1
A
ALA
127
A
ALA
127
1
Y
1
A
ARG
128
A
ARG
128
1
Y
1
A
GLY
129
A
GLY
129
1
Y
1
A
SER
130
A
SER
130
1
Y
1
A
HIS
131
A
HIS
131
1
Y
1
A
HIS
132
A
HIS
132
1
Y
1
A
HIS
133
A
HIS
133
1
Y
1
A
HIS
134
A
HIS
134
1
Y
1
A
HIS
135
A
HIS
135
1
Y
1
A
HIS
136
A
HIS
136
1
Y
1
A
A
N
N
ASN
ASN
2
2
1.43
1_555
3_655
1
A
ASN
65
73.32
-0.11
30.8
0.2570000
0.2240000
2.20
22.0
747
7479
7479
100
random
1
isotropic
R-free
0
0
MIR
de novo
Engh & Huber
2.20
22.0
110
1054
0
0
944
0.0054
1.115
0.2757000
0.2220000
2.25
49
461
23.3
2.2
22.0
1K46
7503
7503
0
0
0.0500000
0.0500000
1
20.8
6.2
99.8
0.1360000
2.20
2.28
16.2
720
1
6.1
99.9
phasing
MLPHARE
refinement
CNS
0.9
data reduction
DENZO
data scaling
SCALEPACK
Crystal Structure of the Type III Secretory Domain of Yersinia YopH Reveals a Domain-Swapped Dimer
1
N
N
2
N
N
YopH(1-129) can exist as a monomer or dimer in solution. Crystal structure is a domain-swapped dimer consisting of two molecules related by a crystallographic two fold axis: -x+1,y,-z+1/2. The physiologically-relevant form is likely the monomer.
A
SER
4
A
SER
4
HELX_P
A
GLN
18
A
GLN
18
1
1
15
A
THR
43
A
THR
43
HELX_P
A
GLY
47
A
GLY
47
5
2
5
A
ARG
49
A
ARG
49
HELX_P
A
VAL
63
A
VAL
63
1
3
15
A
THR
69
A
THR
69
HELX_P
A
HIS
83
A
HIS
83
1
4
15
A
THR
109
A
THR
109
HELX_P
A
SER
125
A
SER
125
1
5
17
HYDROLASE
domain-swap, phosphopeptide-binding domain, type III secretion domain, HYDROLASE
YOPH_YERPS
UNP
1
1
P08538
MNLSLSDLHRQVSRLVQQESGDCTGKLRGNVAANKETTFQGLTIASGARESEKVFAQTVLSHVANVVLTQEDTAKLLQST
VKHNLNNYDLRSVGNGNSVLVSLRSDQMTLQDAKVLLEAALRQESGARG
1
129
1K46
1
129
P08538
A
1
1
129
1
expression tag
SER
130
1K46
A
P08538
UNP
130
1
expression tag
HIS
131
1K46
A
P08538
UNP
131
1
expression tag
HIS
132
1K46
A
P08538
UNP
132
1
expression tag
HIS
133
1K46
A
P08538
UNP
133
1
expression tag
HIS
134
1K46
A
P08538
UNP
134
1
expression tag
HIS
135
1K46
A
P08538
UNP
135
1
expression tag
HIS
136
1K46
A
P08538
UNP
136
3
anti-parallel
anti-parallel
A
VAL
67
A
VAL
67
A
LEU
68
A
LEU
68
A
ASN
97
A
ASN
97
A
LEU
103
A
LEU
103
A
TYR
88
A
TYR
88
A
GLY
94
A
GLY
94
20
C 2 2 21