0.013655 0.007884 0.000000 0.000000 0.015767 0.000000 0.000000 0.000000 0.005358 0.00000 0.00000 0.00000 Staker, B.L. Hjerrild, K. Feese, M.D. Behnke, C.A. Burgin Jr., A.B. Stewart, L.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 3 90.00 90.00 120.00 73.235 73.235 186.632 C9 H12 I N2 O8 P 434.078 n 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C9 H12 N O6 P 261.168 n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C10 H15 N2 O7 P S 338.274 n 5'-THIO-THYMIDINE PHOSPHONIC ACID DNA linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N N N 4 N C N 5 N C N 6 N C N 7 N O N 8 N O N 9 N I N 10 R C N 11 N C N 12 S C N 13 R C N 14 N O N 15 N O N 16 N C N 17 N O N 18 N P N 19 N O N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N N N 35 S C N 36 N C N 37 N O N 38 N C N 39 N O N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N N N 48 S C N 49 N C N 50 N O N 51 N C N 52 N C N 53 N C N 54 N N N 55 N C N 56 N N N 57 N N N 58 N O N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N O N 81 N N N 82 N O N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N N N 92 S C N 93 N C N 94 N O N 95 N C N 96 N C N 97 N O N 98 N O N 99 N O N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N N N 108 R C N 109 N C N 110 N O N 111 N C N 112 N S N 113 N O N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N O N 122 N P N 123 N O N 124 N O N 125 N O N 126 N C N 127 R C N 128 N O N 129 S C N 130 N O N 131 N C N 132 R C Y 133 N N Y 134 N C Y 135 N N Y 136 N C Y 137 N C N 138 N N Y 139 N N Y 140 N C Y 141 N N Y 142 N C N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N O N 158 N P N 159 N O N 160 N O N 161 N O N 162 N C N 163 R C N 164 N O N 165 S C N 166 N O N 167 N C N 168 R C N 169 N N N 170 N C N 171 N O N 172 N N N 173 N C N 174 N N N 175 N C N 176 N C N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N O N 192 N P N 193 N O N 194 N O N 195 N O N 196 N C N 197 R C N 198 N O N 199 S C N 200 N O N 201 N C N 202 R C Y 203 N N Y 204 N C Y 205 N N Y 206 N C N 207 N C N 208 N O N 209 N N N 210 N C N 211 N N N 212 N N Y 213 N C N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N O N 229 N P N 230 N O N 231 N O N 232 N O N 233 N C N 234 R C N 235 N O N 236 S C N 237 N O N 238 N C N 239 R C N 240 N N N 241 N C N 242 N O N 243 N N N 244 N C N 245 N O N 246 N C N 247 N C N 248 N C N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C N 269 N C N 270 N C N 271 N O N 272 N N N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C N 289 N C N 290 N C N 291 N O N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 N C N 305 N C N 306 N O N 307 N O N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N N N 314 S C N 315 N C N 316 N O N 317 N C Y 318 N C Y 319 N N Y 320 N C Y 321 N C Y 322 N N N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 S C N 339 N C N 340 N C N 341 N C N 342 N O N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N N N 357 S C N 358 N C N 359 N O N 360 N C N 361 N C N 362 N C N 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N N N 379 S C N 380 N C N 381 N O N 382 N C N 383 N C N 384 N C N 385 N C N 386 N N N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C N 408 N C N 409 N S N 410 N C N 411 N O N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N N N 424 S C N 425 N C N 426 N O N 427 N C Y 428 N C Y 429 N C Y 430 N C Y 431 N C Y 432 N C Y 433 N C N 434 N O N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N N N 447 S C N 448 N C N 449 N O N 450 N C N 451 N C N 452 N C N 453 N O N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N N N 464 S C N 465 N C N 466 N O N 467 N O N 468 N C Y 469 N C Y 470 N C Y 471 N C Y 472 N C Y 473 N C Y 474 N C N 475 N O N 476 N P N 477 N O N 478 N O N 479 N O N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N N N 493 S C N 494 N C N 495 N O N 496 N C N 497 N O N 498 N O N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N S N 507 N N N 508 N C N 509 N C N 510 N O N 511 N N N 512 N C N 513 N O N 514 N C N 515 N C N 516 N C N 517 N C N 518 S C N 519 N O N 520 R C N 521 S C N 522 N O N 523 N O N 524 N P N 525 N O N 526 N O N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N H N 540 N H N 541 N H N 542 N N N 543 S C N 544 N C N 545 N O N 546 R C N 547 N O N 548 N C N 549 N O N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 558 N H N 559 N N N 560 S C N 561 N C N 562 N O N 563 N C Y 564 N C Y 565 N C Y 566 N C Y 567 N N Y 568 N C Y 569 N C Y 570 N C Y 571 N C Y 572 N C N 573 N O N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 580 N H N 581 N H N 582 N H N 583 N H N 584 N H N 585 N H N 586 N N N 587 S C N 588 N C N 589 N O N 590 N C Y 591 N C Y 592 N C Y 593 N C Y 594 N C Y 595 N C Y 596 N C N 597 N O N 598 N O N 599 N H N 600 N H N 601 N H N 602 N H N 603 N H N 604 N H N 605 N H N 606 N H N 607 N H N 608 N H N 609 N H N 610 N N N 611 S C N 612 N C N 613 N O N 614 N C N 615 N C N 616 N C N 617 N O N 618 N H N 619 N H N 620 N H N 621 N H N 622 N H N 623 N H N 624 N H N 625 N H N 626 N H N 627 N H N 628 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N sing N 7 N sing N 8 N sing N 9 N doub N 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N doub N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N sing Y 142 N doub N 143 N sing Y 144 N sing Y 145 N sing Y 146 N doub N 147 N sing Y 148 N doub N 149 N sing N 150 N sing Y 151 N sing Y 152 N doub N 153 N sing Y 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing Y 213 N sing Y 214 N sing Y 215 N doub N 216 N sing Y 217 N sing N 218 N sing Y 219 N doub N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing Y 323 N sing Y 324 N doub Y 325 N doub N 326 N sing Y 327 N sing N 328 N sing Y 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N doub N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N doub N 425 N sing N 426 N sing N 427 N sing N 428 N sing Y 429 N doub Y 430 N sing Y 431 N sing N 432 N sing Y 433 N doub N 434 N sing Y 435 N doub N 436 N sing Y 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N doub N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N doub N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing Y 470 N doub Y 471 N sing Y 472 N sing N 473 N sing Y 474 N doub N 475 N sing Y 476 N doub N 477 N sing Y 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N doub N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N doub N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N doub N 506 N sing N 507 N doub N 508 N sing N 509 N sing N 510 N sing N 511 N doub N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N doub N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N doub N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N doub N 560 N sing N 561 N sing N 562 N sing N 563 N sing Y 564 N doub Y 565 N sing Y 566 N sing N 567 N sing Y 568 N doub Y 569 N sing Y 570 N sing N 571 N sing Y 572 N sing Y 573 N doub N 574 N sing Y 575 N doub N 576 N sing Y 577 N sing N 578 N sing N 579 N sing N 580 N sing N 581 N sing N 582 N sing N 583 N sing N 584 N sing N 585 N sing N 586 N sing N 587 N doub N 588 N sing N 589 N sing N 590 N sing N 591 N sing Y 592 N doub Y 593 N sing Y 594 N sing N 595 N sing Y 596 N doub N 597 N sing Y 598 N doub N 599 N sing Y 600 N sing N 601 N sing N 602 N sing N 603 N sing N 604 N sing N 605 N sing N 606 N sing N 607 N sing N 608 N sing N 609 N sing N 610 N sing N 611 N doub N 612 N sing N 613 N sing N 614 N sing N 615 N sing N 616 N sing N 617 N sing N 618 N sing N 619 N sing N 620 N sing N 621 N sing N 622 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 99 15387 15392 10.1073/pnas.242259599 12426403 The mechanism of topoisomerase I poisoning by a camptothecin analog 2002 10.2210/pdb1k4s/pdb pdb_00001k4s 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD SINGLE WAVELENGTH M x-ray 1 1.0 X25 NSLS SYNCHROTRON NSLS BEAMLINE X25 3284.796 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*(5IU)P*(5IU))-3' 1 syn polymer 4138.985 5'-D(*(SPT)P*GP*AP*AP*AP*AP*AP*(5IU)P*(5IU)P*(5IU)P*(5IU)P*T)-3' 1 syn polymer 7721.218 5'-D(*AP*AP*AP*AP*AP*TP*(IDO)UP*(IDO)UP*(IDO)UP*(IDO)UP*CP*AP*AP*AP*GP*(IDO)UP*CP*(IDO)UP*(IDO)UP*(IDO)UP*(IDO)UP*T)-3' 1 syn polymer 70248.023 DNA topoisomerase I 5.99.1.2 Core Domain and C-Terminal Domain, Residues 174-765 1 man polymer no yes (DA)(DA)(DA)(DA)(DA)(DG)(DA)(DC)(5IU)(5IU) AAAAAGACUU B polydeoxyribonucleotide no yes (SPT)(DG)(DA)(DA)(DA)(DA)(DA)(5IU)(5IU)(5IU)(5IU)(DT) TGAAAAAUUUUT C polydeoxyribonucleotide no yes (DA)(DA)(DA)(DA)(DA)(DT)(5IU)(5IU)(5IU)(5IU)(DC)(DA)(DA)(DA)(DG)(5IU)(DC)(5IU) (5IU)(5IU)(5IU)(DT) AAAAATUUUUCAAAGUCUUUUT D polydeoxyribonucleotide no yes KKPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKA EEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEK LLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWL VSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEK EEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDA KKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLN(PTR)LDPRIT VAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF KKPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKA EEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEK LLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWL VSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEK EEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGIL NKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDA KKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWC KKWGVPIEKIYNKTQREKFAWAIDMADEDYEF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo fall armyworm Spodoptera sample 9606 Homo sapiens 7108 Spodoptera frugiperda PFactBac1 BACULOVIRUS 1 3.43 64.17 VAPOR DIFFUSION, SITTING DROP 8 PEG 8000, Tris-HCl, Na/K Phosphate, KCl, DTT, VAPOR DIFFUSION, SITTING DROP, temperature 289K 289 PEG 8000 1 Tris-HCl 1 Na/K Phosphate 1 KCl 1 DTT 1 5.520 1 20 B 2 D 121 14.185 B_DA2:5IU121_D 1 -8.205 0.629 0.848 -0.329 -5.652 1 20 B 3 D 120 2.125 B_DA3:5IU120_D 2 -3.573 -1.316 0.172 -0.073 -2.597 1 20 B 4 D 119 3.424 B_DA4:5IU119_D 3 -5.347 -0.457 0.944 -0.679 -17.179 1 20 B 5 D 118 12.225 B_DA5:5IU118_D 4 -2.242 -0.316 -0.425 -0.206 -19.553 1 19 B 6 D 117 5.092 B_DG6:DC117_D 5 11.023 -0.260 -0.366 -0.493 -4.023 1 20 B 7 D 116 2.941 B_DA7:5IU116_D 6 14.133 -0.092 0.257 0.041 0.036 1 19 B 8 D 115 0.504 B_DC8:DG115_D 7 6.108 -0.979 -0.240 -0.029 9.625 1 20 B 9 D 114 3.717 B_5IU9:DA114_D 8 9.087 0.619 -0.106 -0.239 3.159 1 20 B 10 D 113 2.329 B_5IU10:DA113_D 9 8.422 0.366 -0.087 -0.337 -2.679 1 20 C 11 D 112 -13.922 C_SPT11:DA112_D 10 21.756 -1.033 -0.929 -0.590 9.038 1 19 C 12 D 111 -0.224 C_DG12:DC111_D 11 3.835 0.392 -0.143 -0.405 2.180 1 20 C 13 D 110 3.601 C_DA13:5IU110_D 12 -12.239 -0.279 0.438 0.084 15.331 1 20 C 14 D 109 1.345 C_DA14:5IU109_D 13 -3.632 -0.273 1.239 -0.524 11.431 1 20 C 15 D 108 -4.976 C_DA15:5IU108_D 14 -5.466 -0.790 0.816 -0.280 2.713 1 20 C 16 D 107 0.910 C_DA16:5IU107_D 15 -2.572 0.424 0.576 -0.595 9.453 1 20 C 17 D 106 1.097 C_DA17:DT106_D 16 -1.325 1.114 0.241 -0.283 8.813 1 20 C 18 D 105 9.576 C_5IU18:DA105_D 17 -4.619 0.043 -0.281 0.190 -3.049 1 20 C 19 D 104 2.642 C_5IU19:DA104_D 18 -6.899 -0.057 0.213 -0.390 -5.261 1 20 C 20 D 103 14.483 C_5IU20:DA103_D 19 -1.734 -0.059 0.349 -0.371 2.459 1 20 C 21 D 102 4.248 C_5IU21:DA102_D 20 -10.705 0.226 -0.543 -0.557 3.355 29.473 B B 2 3 2.774 D D 121 120 3.370 1.411 -0.721 -0.299 BB_DA2DA3:5IU1205IU121_DD 1 -0.115 0.227 29.440 -0.897 1.392 3.272 41.859 B B 3 4 -12.812 D D 120 119 3.230 -9.062 0.047 -0.694 BB_DA3DA4:5IU1195IU120_DD 2 -5.526 7.812 40.550 -0.014 -0.650 3.879 35.845 B B 4 5 -5.272 D D 119 118 3.855 -3.230 0.226 -0.507 BB_DA4DA5:5IU1185IU119_DD 3 5.051 -8.243 35.356 -0.272 0.496 3.543 31.650 B B 5 6 -8.936 D D 118 117 3.409 -4.854 0.076 -1.186 BB_DA5DG6:DC1175IU118_DD 4 -1.218 2.243 31.262 -1.216 -0.379 2.796 34.217 B B 6 7 4.948 D D 117 116 2.853 2.894 -0.221 -0.529 BB_DG6DA7:5IU116DC117_DD 5 -5.867 10.030 33.604 -1.298 -0.430 3.197 28.414 B B 7 8 -7.855 D D 116 115 3.257 -3.794 0.108 -0.507 BB_DA7DC8:DG1155IU116_DD 6 8.033 -16.633 27.017 -0.150 1.649 3.115 48.538 B B 8 9 -13.447 D D 115 114 3.088 -10.969 0.331 -0.452 BB_DC85IU9:DA114DG115_DD 7 0.179 -0.220 47.355 0.263 -0.390 3.523 34.826 B B 9 10 4.168 D D 114 113 3.562 2.487 0.317 -0.626 BB_5IU95IU10:DA113DA114_DD 8 4.244 -7.114 34.488 -1.458 0.174 3.319 31.596 B C 10 11 -5.908 D D 113 112 3.504 -3.140 0.079 -0.385 BC_5IU10SPT11:DA112DA113_DD 9 11.594 -21.815 29.278 -0.075 2.187 3.171 39.976 C C 11 12 0.149 D D 112 111 3.170 0.102 -0.024 0.204 CC_SPT11DG12:DC111DA112_DD 10 -0.559 0.818 39.972 0.287 -0.028 3.364 32.906 C C 12 13 17.369 D D 111 110 3.499 9.701 -0.143 0.044 CC_DG12DA13:5IU110DC111_DD 11 0.038 -0.068 31.482 -1.700 0.259 2.530 31.549 C C 13 14 0.035 D D 110 109 2.599 0.019 0.129 -0.888 CC_DA13DA14:5IU1095IU110_DD 12 -5.951 11.008 30.997 -1.636 -1.114 3.404 34.797 C C 14 15 -11.492 D D 109 108 3.271 -6.827 -0.298 -0.953 CC_DA14DA15:5IU1085IU109_DD 13 -2.085 3.511 34.079 -0.520 0.171 3.613 40.696 C C 15 16 -8.180 D D 108 107 3.538 -5.671 0.300 -0.733 CC_DA15DA16:5IU1075IU108_DD 14 1.570 -2.265 40.286 -0.363 -0.240 3.221 41.298 C C 16 17 -10.195 D D 107 106 3.251 -7.157 -0.107 -0.086 CC_DA16DA17:DT1065IU107_DD 15 -0.258 0.368 40.699 0.645 0.123 3.209 30.163 C C 17 18 1.129 D D 106 105 3.239 0.586 0.193 -1.368 CC_DA175IU18:DA105DT106_DD 16 4.085 -7.874 29.886 -2.746 0.453 3.849 36.940 C C 18 19 -11.930 D D 105 104 3.899 -7.506 0.096 -0.192 CC_5IU185IU19:DA104DA105_DD 17 -2.197 3.492 36.131 0.910 -0.507 3.257 34.691 C C 19 20 -6.555 D D 104 103 3.173 -3.899 0.491 -0.783 CC_5IU195IU20:DA103DA104_DD 18 1.511 -2.540 34.445 -0.723 -0.595 2.601 37.555 C C 20 21 -1.586 D D 103 102 2.706 -1.014 -0.240 -0.104 CC_5IU205IU21:DA102DA103_DD 19 7.989 -12.499 36.712 -0.052 1.229 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description Data collection 1 0 2002-12-04 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-08-16 1 4 2023-11-15 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 Human Reconstituted DNA Topoisomerase I In Non-Covalent Complex With A 22 Base Pair DNA Duplex Human Reconstituted DNA Topoisomerase I In Covalent Complex With A 22 Base Pair DNA Duplex Human DNA Topoisomerase I (70 Kda) In Non-Covalent Complex With A 22 Base Pair DNA Duplex RCSB Y RCSB 2001-10-08 REL 1A36 PDB ENTRY 1A36 PDB experimental model ADE 1 n 1 DA 1 B ADE 2 n 2 DA 2 B ADE 3 n 3 DA 3 B ADE 4 n 4 DA 4 B ADE 5 n 5 DA 5 B GUA 6 n 6 DG 6 B ADE 7 n 7 DA 7 B CYT 8 n 8 DC 8 B URI 9 n 9 5IU 9 B URI 10 n 10 5IU 10 B THY 11 n 1 SPT 11 C GUA 12 n 2 DG 12 C ADE 13 n 3 DA 13 C ADE 14 n 4 DA 14 C ADE 15 n 5 DA 15 C ADE 16 n 6 DA 16 C ADE 17 n 7 DA 17 C URI 18 n 8 5IU 18 C URI 19 n 9 5IU 19 C URI 20 n 10 5IU 20 C URI 21 n 11 5IU 21 C THY 22 n 12 DT 22 C ADE 101 n 1 DA 101 D ADE 102 n 2 DA 102 D ADE 103 n 3 DA 103 D ADE 104 n 4 DA 104 D ADE 105 n 5 DA 105 D THY 106 n 6 DT 106 D URI 107 n 7 5IU 107 D URI 108 n 8 5IU 108 D URI 109 n 9 5IU 109 D URI 110 n 10 5IU 110 D CYT 111 n 11 DC 111 D ADE 112 n 12 DA 112 D ADE 113 n 13 DA 113 D ADE 114 n 14 DA 114 D GUA 115 n 15 DG 115 D URI 116 n 16 5IU 116 D CYT 117 n 17 DC 117 D URI 118 n 18 5IU 118 D URI 119 n 19 5IU 119 D URI 120 n 20 5IU 120 D URI 121 n 21 5IU 121 D THY 122 n 22 DT 122 D n 1 174 A n 2 175 A n 3 176 A n 4 177 A n 5 178 A n 6 179 A n 7 180 A n 8 181 A n 9 182 A n 10 183 A n 11 184 A n 12 185 A n 13 186 A n 14 187 A n 15 188 A n 16 189 A n 17 190 A n 18 191 A n 19 192 A n 20 193 A n 21 194 A n 22 195 A n 23 196 A n 24 197 A n 25 198 A n 26 199 A n 27 200 A ALA 201 n 28 GLN 201 A ALA 202 n 29 LYS 202 A TRP 203 n 30 TRP 203 A LYS 204 n 31 LYS 204 A TRP 205 n 32 TRP 205 A TRP 206 n 33 TRP 206 A GLU 207 n 34 GLU 207 A GLU 208 n 35 GLU 208 A GLU 209 n 36 GLU 209 A ARG 210 n 37 ARG 210 A TYR 211 n 38 TYR 211 A PRO 212 n 39 PRO 212 A GLU 213 n 40 GLU 213 A GLY 214 n 41 GLY 214 A ILE 215 n 42 ILE 215 A LYS 216 n 43 LYS 216 A TRP 217 n 44 TRP 217 A LYS 218 n 45 LYS 218 A PHE 219 n 46 PHE 219 A LEU 220 n 47 LEU 220 A GLU 221 n 48 GLU 221 A HIS 222 n 49 HIS 222 A LYS 223 n 50 LYS 223 A GLY 224 n 51 GLY 224 A PRO 225 n 52 PRO 225 A VAL 226 n 53 VAL 226 A PHE 227 n 54 PHE 227 A ALA 228 n 55 ALA 228 A PRO 229 n 56 PRO 229 A PRO 230 n 57 PRO 230 A TYR 231 n 58 TYR 231 A GLU 232 n 59 GLU 232 A PRO 233 n 60 PRO 233 A LEU 234 n 61 LEU 234 A PRO 235 n 62 PRO 235 A GLU 236 n 63 GLU 236 A ASN 237 n 64 ASN 237 A VAL 238 n 65 VAL 238 A LYS 239 n 66 LYS 239 A PHE 240 n 67 PHE 240 A TYR 241 n 68 TYR 241 A TYR 242 n 69 TYR 242 A ASP 243 n 70 ASP 243 A GLY 244 n 71 GLY 244 A LYS 245 n 72 LYS 245 A VAL 246 n 73 VAL 246 A MET 247 n 74 MET 247 A ALA 248 n 75 LYS 248 A LEU 249 n 76 LEU 249 A SER 250 n 77 SER 250 A PRO 251 n 78 PRO 251 A LYS 252 n 79 LYS 252 A ALA 253 n 80 ALA 253 A GLU 254 n 81 GLU 254 A GLU 255 n 82 GLU 255 A VAL 256 n 83 VAL 256 A ALA 257 n 84 ALA 257 A THR 258 n 85 THR 258 A PHE 259 n 86 PHE 259 A PHE 260 n 87 PHE 260 A ALA 261 n 88 ALA 261 A LYS 262 n 89 LYS 262 A MET 263 n 90 MET 263 A LEU 264 n 91 LEU 264 A ASP 265 n 92 ASP 265 A HIS 266 n 93 HIS 266 A GLU 267 n 94 GLU 267 A TYR 268 n 95 TYR 268 A THR 269 n 96 THR 269 A THR 270 n 97 THR 270 A LYS 271 n 98 LYS 271 A GLU 272 n 99 GLU 272 A ILE 273 n 100 ILE 273 A PHE 274 n 101 PHE 274 A ARG 275 n 102 ARG 275 A ALA 276 n 103 LYS 276 A ASN 277 n 104 ASN 277 A PHE 278 n 105 PHE 278 A PHE 279 n 106 PHE 279 A LYS 280 n 107 LYS 280 A ASP 281 n 108 ASP 281 A TRP 282 n 109 TRP 282 A ARG 283 n 110 ARG 283 A LYS 284 n 111 LYS 284 A GLU 285 n 112 GLU 285 A MET 286 n 113 MET 286 A THR 287 n 114 THR 287 A ASN 288 n 115 ASN 288 A ALA 289 n 116 GLU 289 A GLU 290 n 117 GLU 290 A LYS 291 n 118 LYS 291 A ASN 292 n 119 ASN 292 A ILE 293 n 120 ILE 293 A ILE 294 n 121 ILE 294 A THR 295 n 122 THR 295 A ASN 296 n 123 ASN 296 A LEU 297 n 124 LEU 297 A SER 298 n 125 SER 298 A LYS 299 n 126 LYS 299 A CYS 300 n 127 CYS 300 A ASP 301 n 128 ASP 301 A PHE 302 n 129 PHE 302 A THR 303 n 130 THR 303 A GLN 304 n 131 GLN 304 A MET 305 n 132 MET 305 A SER 306 n 133 SER 306 A GLN 307 n 134 GLN 307 A TYR 308 n 135 TYR 308 A PHE 309 n 136 PHE 309 A LYS 310 n 137 LYS 310 A ALA 311 n 138 ALA 311 A GLN 312 n 139 GLN 312 A THR 313 n 140 THR 313 A ALA 314 n 141 GLU 314 A ALA 315 n 142 ALA 315 A ALA 316 n 143 ARG 316 A ALA 317 n 144 LYS 317 A ALA 318 n 145 GLN 318 A ALA 319 n 146 MET 319 A SER 320 n 147 SER 320 A ALA 321 n 148 LYS 321 A ALA 322 n 149 GLU 322 A ALA 323 n 150 GLU 323 A LYS 324 n 151 LYS 324 A LEU 325 n 152 LEU 325 A ALA 326 n 153 LYS 326 A ILE 327 n 154 ILE 327 A LYS 328 n 155 LYS 328 A GLU 329 n 156 GLU 329 A GLU 330 n 157 GLU 330 A ASN 331 n 158 ASN 331 A ALA 332 n 159 GLU 332 A ALA 333 n 160 LYS 333 A LEU 334 n 161 LEU 334 A LEU 335 n 162 LEU 335 A LYS 336 n 163 LYS 336 A GLU 337 n 164 GLU 337 A TYR 338 n 165 TYR 338 A GLY 339 n 166 GLY 339 A PHE 340 n 167 PHE 340 A CYS 341 n 168 CYS 341 A ILE 342 n 169 ILE 342 A MET 343 n 170 MET 343 A ASP 344 n 171 ASP 344 A ASN 345 n 172 ASN 345 A HIS 346 n 173 HIS 346 A LYS 347 n 174 LYS 347 A GLU 348 n 175 GLU 348 A ARG 349 n 176 ARG 349 A ILE 350 n 177 ILE 350 A ALA 351 n 178 ALA 351 A ASN 352 n 179 ASN 352 A PHE 353 n 180 PHE 353 A LYS 354 n 181 LYS 354 A ILE 355 n 182 ILE 355 A GLU 356 n 183 GLU 356 A PRO 357 n 184 PRO 357 A PRO 358 n 185 PRO 358 A GLY 359 n 186 GLY 359 A LEU 360 n 187 LEU 360 A PHE 361 n 188 PHE 361 A ARG 362 n 189 ARG 362 A GLY 363 n 190 GLY 363 A ARG 364 n 191 ARG 364 A GLY 365 n 192 GLY 365 A ASN 366 n 193 ASN 366 A HIS 367 n 194 HIS 367 A PRO 368 n 195 PRO 368 A LYS 369 n 196 LYS 369 A MET 370 n 197 MET 370 A GLY 371 n 198 GLY 371 A MET 372 n 199 MET 372 A LEU 373 n 200 LEU 373 A LYS 374 n 201 LYS 374 A ARG 375 n 202 ARG 375 A ARG 376 n 203 ARG 376 A ILE 377 n 204 ILE 377 A MET 378 n 205 MET 378 A PRO 379 n 206 PRO 379 A GLU 380 n 207 GLU 380 A ASP 381 n 208 ASP 381 A ILE 382 n 209 ILE 382 A ILE 383 n 210 ILE 383 A ILE 384 n 211 ILE 384 A ASN 385 n 212 ASN 385 A CYS 386 n 213 CYS 386 A SER 387 n 214 SER 387 A LYS 388 n 215 LYS 388 A ASP 389 n 216 ASP 389 A ALA 390 n 217 ALA 390 A LYS 391 n 218 LYS 391 A VAL 392 n 219 VAL 392 A PRO 393 n 220 PRO 393 A SER 394 n 221 SER 394 A PRO 395 n 222 PRO 395 A PRO 396 n 223 PRO 396 A PRO 397 n 224 PRO 397 A GLY 398 n 225 GLY 398 A HIS 399 n 226 HIS 399 A LYS 400 n 227 LYS 400 A TRP 401 n 228 TRP 401 A LYS 402 n 229 LYS 402 A GLU 403 n 230 GLU 403 A VAL 404 n 231 VAL 404 A ARG 405 n 232 ARG 405 A HIS 406 n 233 HIS 406 A ASP 407 n 234 ASP 407 A ASN 408 n 235 ASN 408 A LYS 409 n 236 LYS 409 A VAL 410 n 237 VAL 410 A THR 411 n 238 THR 411 A TRP 412 n 239 TRP 412 A LEU 413 n 240 LEU 413 A VAL 414 n 241 VAL 414 A SER 415 n 242 SER 415 A TRP 416 n 243 TRP 416 A THR 417 n 244 THR 417 A GLU 418 n 245 GLU 418 A ASN 419 n 246 ASN 419 A ILE 420 n 247 ILE 420 A GLN 421 n 248 GLN 421 A GLY 422 n 249 GLY 422 A SER 423 n 250 SER 423 A ILE 424 n 251 ILE 424 A LYS 425 n 252 LYS 425 A TYR 426 n 253 TYR 426 A ILE 427 n 254 ILE 427 A MET 428 n 255 MET 428 A LEU 429 n 256 LEU 429 A ASN 430 n 257 ASN 430 A PRO 431 n 258 PRO 431 A SER 432 n 259 SER 432 A SER 433 n 260 SER 433 A ARG 434 n 261 ARG 434 A ILE 435 n 262 ILE 435 A LYS 436 n 263 LYS 436 A GLY 437 n 264 GLY 437 A GLU 438 n 265 GLU 438 A LYS 439 n 266 LYS 439 A ASP 440 n 267 ASP 440 A TRP 441 n 268 TRP 441 A GLN 442 n 269 GLN 442 A LYS 443 n 270 LYS 443 A TYR 444 n 271 TYR 444 A GLU 445 n 272 GLU 445 A THR 446 n 273 THR 446 A ALA 447 n 274 ALA 447 A ARG 448 n 275 ARG 448 A ARG 449 n 276 ARG 449 A LEU 450 n 277 LEU 450 A LYS 451 n 278 LYS 451 A LYS 452 n 279 LYS 452 A CYS 453 n 280 CYS 453 A VAL 454 n 281 VAL 454 A ASP 455 n 282 ASP 455 A LYS 456 n 283 LYS 456 A ILE 457 n 284 ILE 457 A ARG 458 n 285 ARG 458 A ASN 459 n 286 ASN 459 A GLN 460 n 287 GLN 460 A TYR 461 n 288 TYR 461 A ALA 462 n 289 ARG 462 A ALA 463 n 290 GLU 463 A ASP 464 n 291 ASP 464 A TRP 465 n 292 TRP 465 A ALA 466 n 293 LYS 466 A SER 467 n 294 SER 467 A ALA 468 n 295 LYS 468 A GLU 469 n 296 GLU 469 A MET 470 n 297 MET 470 A ALA 471 n 298 LYS 471 A VAL 472 n 299 VAL 472 A ARG 473 n 300 ARG 473 A GLN 474 n 301 GLN 474 A ARG 475 n 302 ARG 475 A ALA 476 n 303 ALA 476 A VAL 477 n 304 VAL 477 A ALA 478 n 305 ALA 478 A LEU 479 n 306 LEU 479 A TYR 480 n 307 TYR 480 A PHE 481 n 308 PHE 481 A ILE 482 n 309 ILE 482 A ASP 483 n 310 ASP 483 A ALA 484 n 311 LYS 484 A LEU 485 n 312 LEU 485 A ALA 486 n 313 ALA 486 A LEU 487 n 314 LEU 487 A ARG 488 n 315 ARG 488 A ALA 489 n 316 ALA 489 A GLY 490 n 317 GLY 490 A ASN 491 n 318 ASN 491 A GLU 492 n 319 GLU 492 A LYS 493 n 320 LYS 493 A GLU 494 n 321 GLU 494 A ALA 495 n 322 GLU 495 A GLY 496 n 323 GLY 496 A GLU 497 n 324 GLU 497 A THR 498 n 325 THR 498 A ALA 499 n 326 ALA 499 A ASP 500 n 327 ASP 500 A THR 501 n 328 THR 501 A VAL 502 n 329 VAL 502 A GLY 503 n 330 GLY 503 A CYS 504 n 331 CYS 504 A CYS 505 n 332 CYS 505 A SER 506 n 333 SER 506 A LEU 507 n 334 LEU 507 A ARG 508 n 335 ARG 508 A VAL 509 n 336 VAL 509 A GLU 510 n 337 GLU 510 A HIS 511 n 338 HIS 511 A ILE 512 n 339 ILE 512 A ASN 513 n 340 ASN 513 A LEU 514 n 341 LEU 514 A HIS 515 n 342 HIS 515 A PRO 516 n 343 PRO 516 A GLU 517 n 344 GLU 517 A LEU 518 n 345 LEU 518 A ASP 519 n 346 ASP 519 A GLY 520 n 347 GLY 520 A GLN 521 n 348 GLN 521 A GLU 522 n 349 GLU 522 A TYR 523 n 350 TYR 523 A VAL 524 n 351 VAL 524 A VAL 525 n 352 VAL 525 A GLU 526 n 353 GLU 526 A PHE 527 n 354 PHE 527 A ASP 528 n 355 ASP 528 A PHE 529 n 356 PHE 529 A LEU 530 n 357 LEU 530 A GLY 531 n 358 GLY 531 A LYS 532 n 359 LYS 532 A ASP 533 n 360 ASP 533 A SER 534 n 361 SER 534 A ILE 535 n 362 ILE 535 A ARG 536 n 363 ARG 536 A TYR 537 n 364 TYR 537 A TYR 538 n 365 TYR 538 A ASN 539 n 366 ASN 539 A LYS 540 n 367 LYS 540 A VAL 541 n 368 VAL 541 A PRO 542 n 369 PRO 542 A VAL 543 n 370 VAL 543 A GLU 544 n 371 GLU 544 A LYS 545 n 372 LYS 545 A ALA 546 n 373 ARG 546 A VAL 547 n 374 VAL 547 A PHE 548 n 375 PHE 548 A LYS 549 n 376 LYS 549 A ASN 550 n 377 ASN 550 A LEU 551 n 378 LEU 551 A GLN 552 n 379 GLN 552 A LEU 553 n 380 LEU 553 A PHE 554 n 381 PHE 554 A MET 555 n 382 MET 555 A GLU 556 n 383 GLU 556 A ASN 557 n 384 ASN 557 A LYS 558 n 385 LYS 558 A GLN 559 n 386 GLN 559 A PRO 560 n 387 PRO 560 A GLU 561 n 388 GLU 561 A ASP 562 n 389 ASP 562 A ASP 563 n 390 ASP 563 A LEU 564 n 391 LEU 564 A PHE 565 n 392 PHE 565 A ASP 566 n 393 ASP 566 A ARG 567 n 394 ARG 567 A LEU 568 n 395 LEU 568 A ASN 569 n 396 ASN 569 A THR 570 n 397 THR 570 A GLY 571 n 398 GLY 571 A ILE 572 n 399 ILE 572 A LEU 573 n 400 LEU 573 A ASN 574 n 401 ASN 574 A LYS 575 n 402 LYS 575 A HIS 576 n 403 HIS 576 A LEU 577 n 404 LEU 577 A GLN 578 n 405 GLN 578 A ASP 579 n 406 ASP 579 A LEU 580 n 407 LEU 580 A MET 581 n 408 MET 581 A ALA 582 n 409 GLU 582 A GLY 583 n 410 GLY 583 A LEU 584 n 411 LEU 584 A THR 585 n 412 THR 585 A ALA 586 n 413 ALA 586 A LYS 587 n 414 LYS 587 A VAL 588 n 415 VAL 588 A PHE 589 n 416 PHE 589 A ARG 590 n 417 ARG 590 A THR 591 n 418 THR 591 A TYR 592 n 419 TYR 592 A ASN 593 n 420 ASN 593 A ALA 594 n 421 ALA 594 A SER 595 n 422 SER 595 A ILE 596 n 423 ILE 596 A THR 597 n 424 THR 597 A LEU 598 n 425 LEU 598 A GLN 599 n 426 GLN 599 A GLN 600 n 427 GLN 600 A GLN 601 n 428 GLN 601 A LEU 602 n 429 LEU 602 A LYS 603 n 430 LYS 603 A GLU 604 n 431 GLU 604 A LEU 605 n 432 LEU 605 A THR 606 n 433 THR 606 A ALA 607 n 434 ALA 607 A PRO 608 n 435 PRO 608 A ALA 609 n 436 ASP 609 A ALA 610 n 437 GLU 610 A ALA 611 n 438 ASN 611 A ILE 612 n 439 ILE 612 A PRO 613 n 440 PRO 613 A ALA 614 n 441 ALA 614 A LYS 615 n 442 LYS 615 A ILE 616 n 443 ILE 616 A LEU 617 n 444 LEU 617 A SER 618 n 445 SER 618 A TYR 619 n 446 TYR 619 A ASN 620 n 447 ASN 620 A ARG 621 n 448 ARG 621 A ALA 622 n 449 ALA 622 A ASN 623 n 450 ASN 623 A ARG 624 n 451 ARG 624 A ALA 625 n 452 ALA 625 A VAL 626 n 453 VAL 626 A ALA 627 n 454 ALA 627 A ILE 628 n 455 ILE 628 A LEU 629 n 456 LEU 629 A CYS 630 n 457 CYS 630 A ASN 631 n 458 ASN 631 A HIS 632 n 459 HIS 632 A n 460 633 A n 461 634 A n 462 635 A n 463 636 A n 464 637 A n 465 638 A n 466 639 A n 467 640 A n 468 641 A n 469 642 A n 470 643 A n 471 644 A n 472 645 A n 473 646 A n 474 647 A n 475 648 A n 476 649 A n 477 650 A n 478 651 A n 479 652 A n 480 653 A n 481 654 A n 482 655 A n 483 656 A n 484 657 A n 485 658 A n 486 659 A n 487 660 A n 488 661 A n 489 662 A n 490 663 A n 491 664 A n 492 665 A n 493 666 A n 494 667 A n 495 668 A n 496 669 A n 497 670 A n 498 671 A n 499 672 A n 500 673 A n 501 674 A n 502 675 A n 503 676 A n 504 677 A n 505 678 A n 506 679 A n 507 680 A n 508 681 A n 509 682 A n 510 683 A n 511 684 A n 512 685 A n 513 686 A n 514 687 A n 515 688 A n 516 689 A n 517 690 A n 518 691 A n 519 692 A n 520 693 A n 521 694 A n 522 695 A n 523 696 A n 524 697 A n 525 698 A n 526 699 A n 527 700 A n 528 701 A n 529 702 A n 530 703 A n 531 704 A n 532 705 A n 533 706 A n 534 707 A ARG 708 n 535 ARG 708 A GLU 709 n 536 GLU 709 A GLU 710 n 537 GLU 710 A ASN 711 n 538 ASN 711 A ALA 712 n 539 LYS 712 A GLN 713 n 540 GLN 713 A ILE 714 n 541 ILE 714 A ALA 715 n 542 ALA 715 A LEU 716 n 543 LEU 716 A GLY 717 n 544 GLY 717 A THR 718 n 545 THR 718 A SER 719 n 546 SER 719 A LYS 720 n 547 LYS 720 A LEU 721 n 548 LEU 721 A ASN 722 n 549 ASN 722 A PTR 723 n 550 PTR 723 A LEU 724 n 551 LEU 724 A ASP 725 n 552 ASP 725 A PRO 726 n 553 PRO 726 A ARG 727 n 554 ARG 727 A ILE 728 n 555 ILE 728 A THR 729 n 556 THR 729 A VAL 730 n 557 VAL 730 A ALA 731 n 558 ALA 731 A TRP 732 n 559 TRP 732 A CYS 733 n 560 CYS 733 A LYS 734 n 561 LYS 734 A ALA 735 n 562 LYS 735 A TRP 736 n 563 TRP 736 A GLY 737 n 564 GLY 737 A VAL 738 n 565 VAL 738 A PRO 739 n 566 PRO 739 A ILE 740 n 567 ILE 740 A ALA 741 n 568 GLU 741 A ALA 742 n 569 LYS 742 A ILE 743 n 570 ILE 743 A TYR 744 n 571 TYR 744 A ASN 745 n 572 ASN 745 A LYS 746 n 573 LYS 746 A THR 747 n 574 THR 747 A GLN 748 n 575 GLN 748 A ARG 749 n 576 ARG 749 A GLU 750 n 577 GLU 750 A LYS 751 n 578 LYS 751 A PHE 752 n 579 PHE 752 A ALA 753 n 580 ALA 753 A TRP 754 n 581 TRP 754 A ALA 755 n 582 ALA 755 A ILE 756 n 583 ILE 756 A ASP 757 n 584 ASP 757 A MET 758 n 585 MET 758 A ALA 759 n 586 ALA 759 A ALA 760 n 587 ASP 760 A GLU 761 n 588 GLU 761 A ALA 762 n 589 ASP 762 A TYR 763 n 590 TYR 763 A ALA 764 n 591 GLU 764 A PHE 765 n 592 PHE 765 A author_defined_assembly 4 tetrameric B 5IU 9 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE A 5IU 9 DU B 5IU 10 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE A 5IU 10 DU C SPT 11 5'-THIO-THYMIDINE PHOSPHONIC ACID B SPT 1 DT C 5IU 18 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE B 5IU 8 DU C 5IU 19 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE B 5IU 9 DU C 5IU 20 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE B 5IU 10 DU C 5IU 21 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE B 5IU 11 DU D 5IU 107 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE C 5IU 7 DU D 5IU 108 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE C 5IU 8 DU D 5IU 109 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE C 5IU 9 DU D 5IU 110 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE C 5IU 10 DU D 5IU 116 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE C 5IU 16 DU D 5IU 118 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE C 5IU 18 DU D 5IU 119 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE C 5IU 19 DU D 5IU 120 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE C 5IU 20 DU D 5IU 121 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE C 5IU 21 DU A PTR 723 O-PHOSPHOTYROSINE D PTR 550 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 221 D N GLU 48 A O ILE 342 D O ILE 169 A O ARG 405 D O ARG 232 A N ILE 384 D N ILE 211 A N ILE 383 D N ILE 210 A O SER 415 D O SER 242 A N TRP 416 D N TRP 243 A O LYS 425 D O LYS 252 A N HIS 515 D N HIS 342 A O VAL 524 D O VAL 351 A N PHE 527 D N PHE 354 A O ASN 539 D O ASN 366 1 A CG GLN 201 D CG GLN 28 1 Y 1 A CD GLN 201 D CD GLN 28 1 Y 1 A OE1 GLN 201 D OE1 GLN 28 1 Y 1 A NE2 GLN 201 D NE2 GLN 28 1 Y 1 A CG LYS 202 D CG LYS 29 1 Y 1 A CD LYS 202 D CD LYS 29 1 Y 1 A CE LYS 202 D CE LYS 29 1 Y 1 A NZ LYS 202 D NZ LYS 29 1 Y 1 A CG LYS 248 D CG LYS 75 1 Y 1 A CD LYS 248 D CD LYS 75 1 Y 1 A CE LYS 248 D CE LYS 75 1 Y 1 A NZ LYS 248 D NZ LYS 75 1 Y 1 A CG LYS 276 D CG LYS 103 1 Y 1 A CD LYS 276 D CD LYS 103 1 Y 1 A CE LYS 276 D CE LYS 103 1 Y 1 A NZ LYS 276 D NZ LYS 103 1 Y 1 A CG GLU 289 D CG GLU 116 1 Y 1 A CD GLU 289 D CD GLU 116 1 Y 1 A OE1 GLU 289 D OE1 GLU 116 1 Y 1 A OE2 GLU 289 D OE2 GLU 116 1 Y 1 A CG GLU 314 D CG GLU 141 1 Y 1 A CD GLU 314 D CD GLU 141 1 Y 1 A OE1 GLU 314 D OE1 GLU 141 1 Y 1 A OE2 GLU 314 D OE2 GLU 141 1 Y 1 A CG ARG 316 D CG ARG 143 1 Y 1 A CD ARG 316 D CD ARG 143 1 Y 1 A NE ARG 316 D NE ARG 143 1 Y 1 A CZ ARG 316 D CZ ARG 143 1 Y 1 A NH1 ARG 316 D NH1 ARG 143 1 Y 1 A NH2 ARG 316 D NH2 ARG 143 1 Y 1 A CG LYS 317 D CG LYS 144 1 Y 1 A CD LYS 317 D CD LYS 144 1 Y 1 A CE LYS 317 D CE LYS 144 1 Y 1 A NZ LYS 317 D NZ LYS 144 1 Y 1 A CG GLN 318 D CG GLN 145 1 Y 1 A CD GLN 318 D CD GLN 145 1 Y 1 A OE1 GLN 318 D OE1 GLN 145 1 Y 1 A NE2 GLN 318 D NE2 GLN 145 1 Y 1 A CG MET 319 D CG MET 146 1 Y 1 A SD MET 319 D SD MET 146 1 Y 1 A CE MET 319 D CE MET 146 1 Y 1 A CG LYS 321 D CG LYS 148 1 Y 1 A CD LYS 321 D CD LYS 148 1 Y 1 A CE LYS 321 D CE LYS 148 1 Y 1 A NZ LYS 321 D NZ LYS 148 1 Y 1 A CG GLU 322 D CG GLU 149 1 Y 1 A CD GLU 322 D CD GLU 149 1 Y 1 A OE1 GLU 322 D OE1 GLU 149 1 Y 1 A OE2 GLU 322 D OE2 GLU 149 1 Y 1 A CG GLU 323 D CG GLU 150 1 Y 1 A CD GLU 323 D CD GLU 150 1 Y 1 A OE1 GLU 323 D OE1 GLU 150 1 Y 1 A OE2 GLU 323 D OE2 GLU 150 1 Y 1 A CG LYS 326 D CG LYS 153 1 Y 1 A CD LYS 326 D CD LYS 153 1 Y 1 A CE LYS 326 D CE LYS 153 1 Y 1 A NZ LYS 326 D NZ LYS 153 1 Y 1 A CG GLU 332 D CG GLU 159 1 Y 1 A CD GLU 332 D CD GLU 159 1 Y 1 A OE1 GLU 332 D OE1 GLU 159 1 Y 1 A OE2 GLU 332 D OE2 GLU 159 1 Y 1 A CG LYS 333 D CG LYS 160 1 Y 1 A CD LYS 333 D CD LYS 160 1 Y 1 A CE LYS 333 D CE LYS 160 1 Y 1 A NZ LYS 333 D NZ LYS 160 1 Y 1 A CG ARG 462 D CG ARG 289 1 Y 1 A CD ARG 462 D CD ARG 289 1 Y 1 A NE ARG 462 D NE ARG 289 1 Y 1 A CZ ARG 462 D CZ ARG 289 1 Y 1 A NH1 ARG 462 D NH1 ARG 289 1 Y 1 A NH2 ARG 462 D NH2 ARG 289 1 Y 1 A CG GLU 463 D CG GLU 290 1 Y 1 A CD GLU 463 D CD GLU 290 1 Y 1 A OE1 GLU 463 D OE1 GLU 290 1 Y 1 A OE2 GLU 463 D OE2 GLU 290 1 Y 1 A CG LYS 466 D CG LYS 293 1 Y 1 A CD LYS 466 D CD LYS 293 1 Y 1 A CE LYS 466 D CE LYS 293 1 Y 1 A NZ LYS 466 D NZ LYS 293 1 Y 1 A CG LYS 468 D CG LYS 295 1 Y 1 A CD LYS 468 D CD LYS 295 1 Y 1 A CE LYS 468 D CE LYS 295 1 Y 1 A NZ LYS 468 D NZ LYS 295 1 Y 1 A CG LYS 471 D CG LYS 298 1 Y 1 A CD LYS 471 D CD LYS 298 1 Y 1 A CE LYS 471 D CE LYS 298 1 Y 1 A NZ LYS 471 D NZ LYS 298 1 Y 1 A CG LYS 484 D CG LYS 311 1 Y 1 A CD LYS 484 D CD LYS 311 1 Y 1 A CE LYS 484 D CE LYS 311 1 Y 1 A NZ LYS 484 D NZ LYS 311 1 Y 1 A CG GLU 495 D CG GLU 322 1 Y 1 A CD GLU 495 D CD GLU 322 1 Y 1 A OE1 GLU 495 D OE1 GLU 322 1 Y 1 A OE2 GLU 495 D OE2 GLU 322 1 Y 1 A CG ARG 546 D CG ARG 373 1 Y 1 A CD ARG 546 D CD ARG 373 1 Y 1 A NE ARG 546 D NE ARG 373 1 Y 1 A CZ ARG 546 D CZ ARG 373 1 Y 1 A NH1 ARG 546 D NH1 ARG 373 1 Y 1 A NH2 ARG 546 D NH2 ARG 373 1 Y 1 A CG GLU 582 D CG GLU 409 1 Y 1 A CD GLU 582 D CD GLU 409 1 Y 1 A OE1 GLU 582 D OE1 GLU 409 1 Y 1 A OE2 GLU 582 D OE2 GLU 409 1 Y 1 A CG ASP 609 D CG ASP 436 1 Y 1 A OD1 ASP 609 D OD1 ASP 436 1 Y 1 A OD2 ASP 609 D OD2 ASP 436 1 Y 1 A CG GLU 610 D CG GLU 437 1 Y 1 A CD GLU 610 D CD GLU 437 1 Y 1 A OE1 GLU 610 D OE1 GLU 437 1 Y 1 A OE2 GLU 610 D OE2 GLU 437 1 Y 1 A CG ASN 611 D CG ASN 438 1 Y 1 A OD1 ASN 611 D OD1 ASN 438 1 Y 1 A ND2 ASN 611 D ND2 ASN 438 1 Y 1 A CG LYS 712 D CG LYS 539 1 Y 1 A CD LYS 712 D CD LYS 539 1 Y 1 A CE LYS 712 D CE LYS 539 1 Y 1 A NZ LYS 712 D NZ LYS 539 1 Y 1 A CG LYS 735 D CG LYS 562 1 Y 1 A CD LYS 735 D CD LYS 562 1 Y 1 A CE LYS 735 D CE LYS 562 1 Y 1 A NZ LYS 735 D NZ LYS 562 1 Y 1 A CG GLU 741 D CG GLU 568 1 Y 1 A CD GLU 741 D CD GLU 568 1 Y 1 A OE1 GLU 741 D OE1 GLU 568 1 Y 1 A OE2 GLU 741 D OE2 GLU 568 1 Y 1 A CG LYS 742 D CG LYS 569 1 Y 1 A CD LYS 742 D CD LYS 569 1 Y 1 A CE LYS 742 D CE LYS 569 1 Y 1 A NZ LYS 742 D NZ LYS 569 1 Y 1 A CG ASP 760 D CG ASP 587 1 Y 1 A OD1 ASP 760 D OD1 ASP 587 1 Y 1 A OD2 ASP 760 D OD2 ASP 587 1 Y 1 A CG ASP 762 D CG ASP 589 1 Y 1 A OD1 ASP 762 D OD1 ASP 589 1 Y 1 A OD2 ASP 762 D OD2 ASP 589 1 Y 1 A CG GLU 764 D CG GLU 591 1 Y 1 A CD GLU 764 D CD GLU 591 1 Y 1 A OE1 GLU 764 D OE1 GLU 591 1 Y 1 A OE2 GLU 764 D OE2 GLU 591 1 Y 1 A LYS 174 D LYS 1 1 Y 1 A LYS 175 D LYS 2 1 Y 1 A PRO 176 D PRO 3 1 Y 1 A LYS 177 D LYS 4 1 Y 1 A ASN 178 D ASN 5 1 Y 1 A LYS 179 D LYS 6 1 Y 1 A ASP 180 D ASP 7 1 Y 1 A LYS 181 D LYS 8 1 Y 1 A ASP 182 D ASP 9 1 Y 1 A LYS 183 D LYS 10 1 Y 1 A LYS 184 D LYS 11 1 Y 1 A VAL 185 D VAL 12 1 Y 1 A PRO 186 D PRO 13 1 Y 1 A GLU 187 D GLU 14 1 Y 1 A PRO 188 D PRO 15 1 Y 1 A ASP 189 D ASP 16 1 Y 1 A ASN 190 D ASN 17 1 Y 1 A LYS 191 D LYS 18 1 Y 1 A LYS 192 D LYS 19 1 Y 1 A LYS 193 D LYS 20 1 Y 1 A LYS 194 D LYS 21 1 Y 1 A PRO 195 D PRO 22 1 Y 1 A LYS 196 D LYS 23 1 Y 1 A LYS 197 D LYS 24 1 Y 1 A GLU 198 D GLU 25 1 Y 1 A GLU 199 D GLU 26 1 Y 1 A GLU 200 D GLU 27 1 Y 1 A GLN 633 D GLN 460 1 Y 1 A ARG 634 D ARG 461 1 Y 1 A ALA 635 D ALA 462 1 Y 1 A PRO 636 D PRO 463 1 Y 1 A PRO 637 D PRO 464 1 Y 1 A LYS 638 D LYS 465 1 Y 1 A THR 639 D THR 466 1 Y 1 A PHE 640 D PHE 467 1 Y 1 A GLU 641 D GLU 468 1 Y 1 A LYS 642 D LYS 469 1 Y 1 A SER 643 D SER 470 1 Y 1 A MET 644 D MET 471 1 Y 1 A MET 645 D MET 472 1 Y 1 A ASN 646 D ASN 473 1 Y 1 A LEU 647 D LEU 474 1 Y 1 A GLN 648 D GLN 475 1 Y 1 A THR 649 D THR 476 1 Y 1 A LYS 650 D LYS 477 1 Y 1 A ILE 651 D ILE 478 1 Y 1 A ASP 652 D ASP 479 1 Y 1 A ALA 653 D ALA 480 1 Y 1 A LYS 654 D LYS 481 1 Y 1 A LYS 655 D LYS 482 1 Y 1 A GLU 656 D GLU 483 1 Y 1 A GLN 657 D GLN 484 1 Y 1 A LEU 658 D LEU 485 1 Y 1 A ALA 659 D ALA 486 1 Y 1 A ASP 660 D ASP 487 1 Y 1 A ALA 661 D ALA 488 1 Y 1 A ARG 662 D ARG 489 1 Y 1 A ARG 663 D ARG 490 1 Y 1 A ASP 664 D ASP 491 1 Y 1 A LEU 665 D LEU 492 1 Y 1 A LYS 666 D LYS 493 1 Y 1 A SER 667 D SER 494 1 Y 1 A ALA 668 D ALA 495 1 Y 1 A LYS 669 D LYS 496 1 Y 1 A ALA 670 D ALA 497 1 Y 1 A ASP 671 D ASP 498 1 Y 1 A ALA 672 D ALA 499 1 Y 1 A LYS 673 D LYS 500 1 Y 1 A VAL 674 D VAL 501 1 Y 1 A MET 675 D MET 502 1 Y 1 A LYS 676 D LYS 503 1 Y 1 A ASP 677 D ASP 504 1 Y 1 A ALA 678 D ALA 505 1 Y 1 A LYS 679 D LYS 506 1 Y 1 A THR 680 D THR 507 1 Y 1 A LYS 681 D LYS 508 1 Y 1 A LYS 682 D LYS 509 1 Y 1 A VAL 683 D VAL 510 1 Y 1 A VAL 684 D VAL 511 1 Y 1 A GLU 685 D GLU 512 1 Y 1 A SER 686 D SER 513 1 Y 1 A LYS 687 D LYS 514 1 Y 1 A LYS 688 D LYS 515 1 Y 1 A LYS 689 D LYS 516 1 Y 1 A ALA 690 D ALA 517 1 Y 1 A VAL 691 D VAL 518 1 Y 1 A GLN 692 D GLN 519 1 Y 1 A ARG 693 D ARG 520 1 Y 1 A LEU 694 D LEU 521 1 Y 1 A GLU 695 D GLU 522 1 Y 1 A GLU 696 D GLU 523 1 Y 1 A GLN 697 D GLN 524 1 Y 1 A LEU 698 D LEU 525 1 Y 1 A MET 699 D MET 526 1 Y 1 A LYS 700 D LYS 527 1 Y 1 A LEU 701 D LEU 528 1 Y 1 A GLU 702 D GLU 529 1 Y 1 A VAL 703 D VAL 530 1 Y 1 A GLN 704 D GLN 531 1 Y 1 A ALA 705 D ALA 532 1 Y 1 A THR 706 D THR 533 1 Y 1 A ASP 707 D ASP 534 1 Y 1 D DC 111 0.080 SIDE CHAIN 1 D DA 114 0.068 SIDE CHAIN 1 D DC 117 0.087 SIDE CHAIN 1 -5.89 0.80 102.40 96.51 B B B C3' C2' C1' DC DC DC 8 8 8 N 1 2.00 0.30 108.30 110.30 B B B O4' C1' N1 DC DC DC 8 8 8 N 1 11.68 1.50 119.30 130.98 A A A C N CA PRO PRO PRO 396 397 397 Y 1 A LYS 204 -119.58 54.13 1 A TRP 205 -38.91 -34.70 1 A GLU 209 -40.54 155.66 1 A PRO 212 -68.73 37.01 1 A GLU 213 56.81 159.43 1 A PHE 240 -103.23 -154.70 1 A TYR 241 -158.04 -105.74 1 A TYR 242 80.20 104.00 1 A LYS 245 -59.29 73.62 1 A VAL 246 -48.56 107.16 1 A MET 263 -151.51 13.73 1 A PHE 278 -61.88 -77.52 1 A PHE 279 -22.77 -71.94 1 A ILE 294 -89.95 49.68 1 A THR 295 -59.58 -4.02 1 A SER 298 -72.57 43.65 1 A LYS 299 -169.65 -2.20 1 A GLN 318 -174.98 -9.65 1 A ASP 344 37.95 -50.27 1 A ASN 345 -171.92 3.75 1 A ASN 352 -161.72 117.30 1 A LYS 374 -75.08 -109.54 1 A ARG 375 160.26 151.85 1 A CYS 386 -101.96 -101.28 1 A SER 387 154.38 92.34 1 A LYS 388 -44.42 90.87 1 A ASP 389 157.82 -31.45 1 A PRO 397 -16.77 124.34 1 A ASN 408 -69.76 10.08 1 A THR 411 -83.46 -81.43 1 A TRP 412 -27.91 136.04 1 A LEU 429 -65.58 -170.34 1 A CYS 453 -69.80 69.95 1 A VAL 454 -141.91 -48.64 1 A GLU 494 -69.54 99.37 1 A GLU 495 -48.61 70.74 1 A ASP 500 -37.66 98.10 1 A LEU 518 172.66 137.32 1 A PHE 529 172.95 158.82 1 A ARG 536 -39.25 121.62 1 A GLU 556 -31.02 121.40 1 A ASN 557 70.59 -2.67 1 A LEU 568 -177.97 126.82 1 A TYR 592 -60.50 -80.84 1 A ALA 594 -52.06 -75.60 1 A LEU 602 -66.01 4.27 1 A GLU 604 -90.55 -73.56 1 A LEU 605 -62.82 13.72 1 A GLU 610 -25.46 136.03 1 A ASN 631 69.26 -5.87 1 A LYS 712 -164.70 20.19 1 A GLN 713 -142.52 -32.08 1 A LEU 716 -69.31 -131.65 1 A THR 718 36.19 -74.85 1 A LEU 721 -36.17 -37.48 1 A ASN 722 -174.30 49.24 1 A PRO 739 -54.11 101.17 1 A TRP 754 171.22 -63.81 1 A ILE 756 -59.45 -81.56 1 A ALA 759 -179.53 149.64 41.78 0.2223 0.2166 3.20 50 1561 17874 17874 96.8 Rfree reflections selected to maintain twin pairs in same set. 1 THROUGHOUT 0 MOLECULAR REPLACEMENT PDB ENTRY 1A36 Engh & Huber 0.48 0.36 5.0 0.37 0.46 3.20 50 0 4858 15 877 3966 0.0088 1.361 22.158 3.352 3.2 50 1K4S 18471 18471 0.13 1 85.9 3.20 3.31 2.95 0.13 69.5 data reduction DENZO data scaling SCALEPACK refinement CNX phasing CNX HUMAN DNA TOPOISOMERASE I IN COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX 1 N N 2 N N 3 N N 4 N N A LYS 204 D LYS 31 HELX_P A GLU 208 D GLU 35 5 1 5 A SER 250 D SER 77 HELX_P A LYS 262 D LYS 89 1 2 13 A HIS 266 D HIS 93 HELX_P A LYS 271 D LYS 98 1 3 6 A LYS 271 D LYS 98 HELX_P A GLU 285 D GLU 112 1 4 15 A THR 287 D THR 114 HELX_P A ILE 294 D ILE 121 1 5 8 A PHE 302 D PHE 129 HELX_P A LYS 317 D LYS 144 1 6 16 A SER 320 D SER 147 HELX_P A GLY 339 D GLY 166 1 7 20 A MET 378 D MET 205 HELX_P A ASP 381 D ASP 208 5 8 4 A SER 433 D SER 260 HELX_P A LYS 451 D LYS 278 1 9 19 A VAL 454 D VAL 281 HELX_P A TRP 465 D TRP 292 1 10 12 A GLU 469 D GLU 296 HELX_P A ALA 486 D ALA 313 1 11 18 A ARG 508 D ARG 335 HELX_P A GLU 510 D GLU 337 5 12 3 A GLY 531 D GLY 358 HELX_P A ILE 535 D ILE 362 5 13 5 A GLU 544 D GLU 371 HELX_P A GLU 556 D GLU 383 1 14 13 A ASN 569 D ASN 396 HELX_P A MET 581 D MET 408 1 15 13 A THR 585 D THR 412 HELX_P A LEU 605 D LEU 432 1 16 21 A ASN 611 D ASN 438 HELX_P A ASN 631 D ASN 458 1 17 21 A THR 718 D THR 545 HELX_P A PTR 723 D PTR 550 1 18 6 A ASP 725 D ASP 552 HELX_P A GLY 737 D GLY 564 1 19 13 A PRO 739 D PRO 566 HELX_P A ILE 743 D ILE 570 5 20 5 A ASN 745 D ASN 572 HELX_P A PHE 752 D PHE 579 1 21 8 covale 1.619 both B DC 8 A O3' DC 8 1_555 B 5IU 9 A P 5IU 9 1_555 covale 1.607 both B 5IU 9 A O3' 5IU 9 1_555 B 5IU 10 A P 5IU 10 1_555 covale 1.435 none B 5IU 10 A C3' 5IU 10 1_555 A PTR 723 D O3P PTR 550 1_555 covale 1.602 both C SPT 11 B O3' SPT 1 1_555 C DG 12 B P DG 2 1_555 covale 1.598 both C DA 17 B O3' DA 7 1_555 C 5IU 18 B P 5IU 8 1_555 covale 1.605 both C 5IU 18 B O3' 5IU 8 1_555 C 5IU 19 B P 5IU 9 1_555 covale 1.605 both C 5IU 19 B O3' 5IU 9 1_555 C 5IU 20 B P 5IU 10 1_555 covale 1.596 both C 5IU 20 B O3' 5IU 10 1_555 C 5IU 21 B P 5IU 11 1_555 covale 1.604 both C 5IU 21 B O3' 5IU 11 1_555 C DT 22 B P DT 12 1_555 covale 1.611 both D DT 106 C O3' DT 6 1_555 D 5IU 107 C P 5IU 7 1_555 covale 1.608 both D 5IU 107 C O3' 5IU 7 1_555 D 5IU 108 C P 5IU 8 1_555 covale 1.610 both D 5IU 108 C O3' 5IU 8 1_555 D 5IU 109 C P 5IU 9 1_555 covale 1.610 both D 5IU 109 C O3' 5IU 9 1_555 D 5IU 110 C P 5IU 10 1_555 covale 1.617 both D 5IU 110 C O3' 5IU 10 1_555 D DC 111 C P DC 11 1_555 covale 1.602 both D DG 115 C O3' DG 15 1_555 D 5IU 116 C P 5IU 16 1_555 covale 1.612 both D 5IU 116 C O3' 5IU 16 1_555 D DC 117 C P DC 17 1_555 covale 1.597 both D DC 117 C O3' DC 17 1_555 D 5IU 118 C P 5IU 18 1_555 covale 1.599 both D 5IU 118 C O3' 5IU 18 1_555 D 5IU 119 C P 5IU 19 1_555 covale 1.611 both D 5IU 119 C O3' 5IU 19 1_555 D 5IU 120 C P 5IU 20 1_555 covale 1.611 both D 5IU 120 C O3' 5IU 20 1_555 D 5IU 121 C P 5IU 21 1_555 covale 1.595 both D 5IU 121 C O3' 5IU 21 1_555 D DT 122 C P DT 22 1_555 covale 1.336 both A ASN 722 D C ASN 549 1_555 A PTR 723 D N PTR 550 1_555 covale 1.318 both A PTR 723 D C PTR 550 1_555 A LEU 724 D N LEU 551 1_555 hydrog WATSON-CRICK B DA 2 A N1 DA 2 1_555 D 5IU 121 C N3 5IU 21 1_555 hydrog WATSON-CRICK B DA 2 A N6 DA 2 1_555 D 5IU 121 C O4 5IU 21 1_555 hydrog WATSON-CRICK B DA 3 A N1 DA 3 1_555 D 5IU 120 C N3 5IU 20 1_555 hydrog WATSON-CRICK B DA 3 A N6 DA 3 1_555 D 5IU 120 C O4 5IU 20 1_555 hydrog WATSON-CRICK B DA 4 A N1 DA 4 1_555 D 5IU 119 C N3 5IU 19 1_555 hydrog WATSON-CRICK B DA 4 A N6 DA 4 1_555 D 5IU 119 C O4 5IU 19 1_555 hydrog WATSON-CRICK B DA 5 A N1 DA 5 1_555 D 5IU 118 C N3 5IU 18 1_555 hydrog WATSON-CRICK B DA 5 A N6 DA 5 1_555 D 5IU 118 C O4 5IU 18 1_555 hydrog WATSON-CRICK B DG 6 A N1 DG 6 1_555 D DC 117 C N3 DC 17 1_555 hydrog WATSON-CRICK B DG 6 A N2 DG 6 1_555 D DC 117 C O2 DC 17 1_555 hydrog WATSON-CRICK B DG 6 A O6 DG 6 1_555 D DC 117 C N4 DC 17 1_555 hydrog WATSON-CRICK B DA 7 A N1 DA 7 1_555 D 5IU 116 C N3 5IU 16 1_555 hydrog WATSON-CRICK B DA 7 A N6 DA 7 1_555 D 5IU 116 C O4 5IU 16 1_555 hydrog WATSON-CRICK B DC 8 A N3 DC 8 1_555 D DG 115 C N1 DG 15 1_555 hydrog WATSON-CRICK B DC 8 A N4 DC 8 1_555 D DG 115 C O6 DG 15 1_555 hydrog WATSON-CRICK B DC 8 A O2 DC 8 1_555 D DG 115 C N2 DG 15 1_555 hydrog WATSON-CRICK B 5IU 9 A N3 5IU 9 1_555 D DA 114 C N1 DA 14 1_555 hydrog WATSON-CRICK B 5IU 9 A O4 5IU 9 1_555 D DA 114 C N6 DA 14 1_555 hydrog WATSON-CRICK B 5IU 10 A N3 5IU 10 1_555 D DA 113 C N1 DA 13 1_555 hydrog WATSON-CRICK B 5IU 10 A O4 5IU 10 1_555 D DA 113 C N6 DA 13 1_555 hydrog WATSON-CRICK C SPT 11 B N3 SPT 1 1_555 D DA 112 C N1 DA 12 1_555 hydrog WATSON-CRICK C SPT 11 B O4 SPT 1 1_555 D DA 112 C N6 DA 12 1_555 hydrog WATSON-CRICK C DG 12 B N1 DG 2 1_555 D DC 111 C N3 DC 11 1_555 hydrog WATSON-CRICK C DG 12 B N2 DG 2 1_555 D DC 111 C O2 DC 11 1_555 hydrog WATSON-CRICK C DG 12 B O6 DG 2 1_555 D DC 111 C N4 DC 11 1_555 hydrog DA-5IU PAIR C DA 13 B N6 DA 3 1_555 D 5IU 109 C O4 5IU 9 1_555 hydrog WATSON-CRICK C DA 13 B N1 DA 3 1_555 D 5IU 110 C N3 5IU 10 1_555 hydrog WATSON-CRICK C DA 13 B N6 DA 3 1_555 D 5IU 110 C O4 5IU 10 1_555 hydrog WATSON-CRICK C DA 14 B N1 DA 4 1_555 D 5IU 109 C N3 5IU 9 1_555 hydrog WATSON-CRICK C DA 14 B N6 DA 4 1_555 D 5IU 109 C O4 5IU 9 1_555 hydrog WATSON-CRICK C DA 15 B N1 DA 5 1_555 D 5IU 108 C N3 5IU 8 1_555 hydrog WATSON-CRICK C DA 15 B N6 DA 5 1_555 D 5IU 108 C O4 5IU 8 1_555 hydrog WATSON-CRICK C DA 16 B N1 DA 6 1_555 D 5IU 107 C N3 5IU 7 1_555 hydrog WATSON-CRICK C DA 16 B N6 DA 6 1_555 D 5IU 107 C O4 5IU 7 1_555 hydrog WATSON-CRICK C DA 17 B N1 DA 7 1_555 D DT 106 C N3 DT 6 1_555 hydrog WATSON-CRICK C DA 17 B N6 DA 7 1_555 D DT 106 C O4 DT 6 1_555 hydrog WATSON-CRICK C 5IU 18 B N3 5IU 8 1_555 D DA 105 C N1 DA 5 1_555 hydrog WATSON-CRICK C 5IU 18 B O4 5IU 8 1_555 D DA 105 C N6 DA 5 1_555 hydrog WATSON-CRICK C 5IU 19 B N3 5IU 9 1_555 D DA 104 C N1 DA 4 1_555 hydrog WATSON-CRICK C 5IU 19 B O4 5IU 9 1_555 D DA 104 C N6 DA 4 1_555 hydrog WATSON-CRICK C 5IU 20 B N3 5IU 10 1_555 D DA 103 C N1 DA 3 1_555 hydrog WATSON-CRICK C 5IU 20 B O4 5IU 10 1_555 D DA 103 C N6 DA 3 1_555 hydrog WATSON-CRICK C 5IU 21 B N3 5IU 11 1_555 D DA 102 C N1 DA 2 1_555 hydrog WATSON-CRICK C 5IU 21 B O4 5IU 11 1_555 D DA 102 C N6 DA 2 1_555 ISOMERASE/DNA Complex (ISOMERASE-DNA), DNA, Topoisomerase I, ISOMERASE-DNA complex TOP1_HUMAN UNP 4 1 P11387 MSGDHLHNDSQIEADFRLNDSHKHKDKHKDREHRHKEHKKEKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDK HKDRDKEKRKEEKVRASGDAKIKKEKENGFSSPPQIKDEPEDDGYFVPPKEDIKPLKRPRDEDDADYKPKKIKTEDTKKE KKRKLEEEEDGKLKKPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKF YYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMS KEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHK WKEVRHDNKVTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALY FIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQP EDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTF EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSK LNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 1K4S PDB 1 1K4S 1K4S PDB 2 1K4S 1K4S PDB 3 1K4S 174 765 1K4S 174 765 P11387 A 1 1 592 1 10 1K4S 1 10 1K4S B 2 1 10 11 22 1K4S 11 22 1K4S C 3 1 12 101 122 1K4S 101 122 1K4S D 4 1 22 1 TYR modified residue PTR 723 1K4S A P11387 UNP 723 550 2 4 3 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 220 D LEU 47 A GLU 221 D GLU 48 A ILE 342 D ILE 169 A MET 343 D MET 170 A GLU 403 D GLU 230 A ARG 405 D ARG 232 A ILE 383 D ILE 210 A ASN 385 D ASN 212 A VAL 414 D VAL 241 A THR 417 D THR 244 A ILE 424 D ILE 251 A ILE 427 D ILE 254 A ILE 512 D ILE 339 A LEU 518 D LEU 345 A GLN 521 D GLN 348 A PHE 527 D PHE 354 A ASN 539 D ASN 366 A PRO 542 D PRO 369 145 P 32