0.025681 0.000000 0.007083 0.000000 0.014237 0.000000 0.000000 0.000000 0.015190 0.00000 0.00000 0.00000 Aishima, J. Gitti, R.K. Noah, J.E. Gan, H.H. Schlick, T. Wolberger, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 105.42 90.00 38.940 70.240 68.290 C9 H12 I N2 O8 P 434.078 n 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N N N 4 N C N 5 N C N 6 N C N 7 N O N 8 N O N 9 N I N 10 R C N 11 N C N 12 S C N 13 R C N 14 N O N 15 N O N 16 N C N 17 N O N 18 N P N 19 N O N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N N N 35 S C N 36 N C N 37 N O N 38 N C N 39 N O N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N N N 48 S C N 49 N C N 50 N O N 51 N C N 52 N C N 53 N C N 54 N N N 55 N C N 56 N N N 57 N N N 58 N O N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N O N 81 N N N 82 N O N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N N N 92 S C N 93 N C N 94 N O N 95 N C N 96 N C N 97 N O N 98 N O N 99 N O N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N O N 108 N P N 109 N O N 110 N O N 111 N O N 112 N C N 113 R C N 114 N O N 115 S C N 116 N O N 117 N C N 118 R C Y 119 N N Y 120 N C Y 121 N N Y 122 N C Y 123 N C N 124 N N Y 125 N N Y 126 N C Y 127 N N Y 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N O N 144 N P N 145 N O N 146 N O N 147 N O N 148 N C N 149 R C N 150 N O N 151 S C N 152 N O N 153 N C N 154 R C N 155 N N N 156 N C N 157 N O N 158 N N N 159 N C N 160 N N N 161 N C N 162 N C N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N O N 178 N P N 179 N O N 180 N O N 181 N O N 182 N C N 183 R C N 184 N O N 185 S C N 186 N O N 187 N C N 188 R C Y 189 N N Y 190 N C Y 191 N N Y 192 N C N 193 N C N 194 N O N 195 N N N 196 N C N 197 N N N 198 N N Y 199 N C N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N O N 215 N P N 216 N O N 217 N O N 218 N O N 219 N C N 220 R C N 221 N O N 222 S C N 223 N O N 224 N C N 225 R C N 226 N N N 227 N C N 228 N O N 229 N N N 230 N C N 231 N O N 232 N C N 233 N C N 234 N C N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C N 255 N C N 256 N C N 257 N O N 258 N N N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N O N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N N N 290 N C N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N N N 300 S C N 301 N C N 302 N O N 303 N C Y 304 N C Y 305 N N Y 306 N C Y 307 N C Y 308 N N N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N O N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 S C N 328 N C N 329 N C N 330 N C N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N C N 351 N C N 352 N C N 353 N O N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N N N 368 S C N 369 N C N 370 N O N 371 N C N 372 N C N 373 N C N 374 N C N 375 N N N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N N 393 S C N 394 N C N 395 N O N 396 N C N 397 N C N 398 N S N 399 N C N 400 N O N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N N N 413 S C N 414 N C N 415 N O N 416 N C Y 417 N C Y 418 N C Y 419 N C Y 420 N C Y 421 N C Y 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N N N 436 S C N 437 N C N 438 N O N 439 N C N 440 N C N 441 N C N 442 N O N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N N N 453 S C N 454 N C N 455 N O N 456 N C N 457 N O N 458 N O N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N N N 467 S C N 468 N C N 469 N O N 470 R C N 471 N O N 472 N C N 473 N O N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N N N 484 S C N 485 N C N 486 N O N 487 N C Y 488 N C Y 489 N C Y 490 N C Y 491 N N Y 492 N C Y 493 N C Y 494 N C Y 495 N C Y 496 N C N 497 N O N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N N N 511 S C N 512 N C N 513 N O N 514 N C Y 515 N C Y 516 N C Y 517 N C Y 518 N C Y 519 N C Y 520 N C N 521 N O N 522 N O N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N N N 535 S C N 536 N C N 537 N O N 538 N C N 539 N C N 540 N C N 541 N O N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N sing N 7 N sing N 8 N sing N 9 N doub N 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N doub N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N sing Y 129 N doub N 130 N sing Y 131 N sing Y 132 N sing Y 133 N doub N 134 N sing Y 135 N doub N 136 N sing N 137 N sing Y 138 N sing Y 139 N doub N 140 N sing Y 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing Y 200 N sing Y 201 N sing Y 202 N doub N 203 N sing Y 204 N sing N 205 N sing Y 206 N doub N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N doub N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing Y 310 N sing Y 311 N doub Y 312 N doub N 313 N sing Y 314 N sing N 315 N sing Y 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N doub N 414 N sing N 415 N sing N 416 N sing N 417 N sing Y 418 N doub Y 419 N sing Y 420 N sing N 421 N sing Y 422 N doub N 423 N sing Y 424 N doub N 425 N sing Y 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N doub N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N doub N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N doub N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N doub N 483 N sing N 484 N sing N 485 N sing N 486 N sing Y 487 N doub Y 488 N sing Y 489 N sing N 490 N sing Y 491 N doub Y 492 N sing Y 493 N sing N 494 N sing Y 495 N sing Y 496 N doub N 497 N sing Y 498 N doub N 499 N sing Y 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N doub N 511 N sing N 512 N sing N 513 N sing N 514 N sing Y 515 N doub Y 516 N sing Y 517 N sing N 518 N sing Y 519 N doub N 520 N sing Y 521 N doub N 522 N sing Y 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N doub N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing UK NUCLEIC ACIDS RES. NARHAD 0389 0305-1048 30 5244 5252 10.1093/nar/gkf661 12466549 A Hoogsteen base pair embedded in undistorted B-DNA 2002 10.2210/pdb1k61/pdb pdb_00001k61 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 Yale mirrors IMAGE PLATE 1998-06-24 RIGAKU RAXIS IV YALE MIRRORS SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 6381.160 5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*TP*TP*CP*AP*TP*TP*TP*AP*CP*AP*CP*GP*C)-3' 1 syn polymer 6613.103 5'-D(*(5IU)P*GP*CP*GP*TP*GP*TP*AP*AP*AP*TP*GP*AP*AP*TP*TP*AP*CP*AP*TP*G)-3' 1 syn polymer 7275.384 Mating-type protein alpha-2 RESIDUES 132-191, HOMEODOMAIN 4 syn polymer 18.015 water 195 nat water Alpha-2 repressor no no (DA)(DC)(DA)(DT)(DG)(DT)(DA)(DA)(DT)(DT)(DC)(DA)(DT)(DT)(DT)(DA)(DC)(DA)(DC)(DG) (DC) ACATGTAATTCATTTACACGC E polydeoxyribonucleotide no yes (5IU)(DG)(DC)(DG)(DT)(DG)(DT)(DA)(DA)(DA)(DT)(DG)(DA)(DA)(DT)(DT)(DA)(DC)(DA) (DT)(DG) UGCGTGTAAATGAATTACATG F polydeoxyribonucleotide no no RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTIT RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTIT A,B,C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.09 41.2 VAPOR DIFFUSION, HANGING DROP 9.0 PEG 6000, Bicine, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 PEG 6000 1 Bicine 1 -6.781 1 19 E 2 F 42 1.155 E_DC2:DG42_F 1 -0.665 0.213 -0.218 -0.013 9.928 1 20 E 3 F 41 0.952 E_DA3:DT41_F 2 -6.085 -0.059 -0.123 -0.136 21.386 1 20 E 4 F 40 2.905 E_DT4:DA40_F 3 -4.120 0.161 -0.006 -0.117 -2.495 1 19 E 5 F 39 2.249 E_DG5:DC39_F 4 -8.552 -0.441 -0.383 -0.003 1.332 1 20 E 6 F 38 9.081 E_DT6:DA38_F 5 -11.357 0.226 -0.179 -0.054 2.518 3 23 E 7 F 37 67.293 E_DA7:DT37_F 6 10.527 0.384 -0.141 -3.613 -1.666 1 20 E 8 F 36 15.903 E_DA8:DT36_F 7 -16.694 -0.061 -0.050 -0.118 -4.621 1 20 E 9 F 35 -0.512 E_DT9:DA35_F 8 -12.185 -0.079 0.019 -0.070 -0.715 1 20 E 10 F 34 2.640 E_DT10:DA34_F 9 -11.768 0.262 -0.232 -0.093 -7.930 1 19 E 11 F 33 1.753 E_DC11:DG33_F 10 -15.919 0.443 0.146 0.010 -6.690 1 20 E 12 F 32 2.130 E_DA12:DT32_F 11 -0.829 0.006 -0.080 -0.008 9.848 1 20 E 13 F 31 1.224 E_DT13:DA31_F 12 -9.484 0.024 0.030 -0.025 0.393 1 20 E 14 F 30 5.242 E_DT14:DA30_F 13 -21.396 -0.127 0.033 -0.064 3.312 1 20 E 15 F 29 2.567 E_DT15:DA29_F 14 -13.890 -0.155 -0.233 -0.077 -11.635 1 20 E 16 F 28 9.631 E_DA16:DT28_F 15 -5.599 -0.417 -0.103 -0.090 -4.481 1 19 E 17 F 27 1.684 E_DC17:DG27_F 16 -8.847 0.185 -0.003 -0.081 -8.391 1 20 E 18 F 26 4.391 E_DA18:DT26_F 17 -9.729 0.237 0.265 -0.077 1.723 1 19 E 19 F 25 0.412 E_DC19:DG25_F 18 -7.736 0.113 -0.139 -0.004 4.537 1 19 E 20 F 24 -3.919 E_DG20:DC24_F 19 -5.449 -0.276 0.024 -0.182 10.556 1 19 E 21 F 23 0.835 E_DC21:DG23_F 20 -6.843 0.592 -0.634 -0.361 3.246 35.030 E E 2 3 15.659 F F 42 41 3.133 9.319 -0.181 0.853 EE_DC2DA3:DT41DG42_FF 1 0.119 -0.199 33.805 0.024 0.318 2.968 26.595 E E 3 4 9.461 F F 41 40 3.128 4.327 0.747 -0.242 EE_DA3DT4:DA40DT41_FF 2 -2.482 5.426 26.131 -1.595 -2.237 3.627 42.735 E E 4 5 9.442 F F 40 39 3.714 6.840 -0.092 -0.068 EE_DT4DG5:DC39DA40_FF 3 4.875 -6.730 41.939 -0.870 0.680 3.067 29.992 E E 5 6 6.821 F F 39 38 3.177 3.522 0.821 -0.670 EE_DG5DT6:DA38DC39_FF 4 -0.434 0.841 29.786 -1.990 -1.673 -0.207 -176.601 E E 6 7 2.046 F F 38 37 -1.387 -4.039 -0.276 3.560 EE_DT6DA7:DT37DA38_FF 5 176.268 89.264 -45.463 -1.793 -0.668 -1.043 179.322 E E 7 8 -50.718 F F 37 36 -1.149 -101.422 -0.715 -3.340 EE_DA7DA8:DT36DT37_FF 6 137.307 -68.664 171.628 -1.694 0.325 3.282 32.293 E E 8 9 6.185 F F 36 35 3.289 3.429 -1.088 -0.712 EE_DA8DT9:DA35DT36_FF 7 -2.988 5.390 31.979 -1.894 1.422 3.044 33.493 E E 9 10 8.521 F F 35 34 3.141 4.885 -0.080 -0.277 EE_DT9DT10:DA34DA35_FF 8 3.657 -6.380 32.948 -1.248 0.713 3.398 41.283 E E 10 11 -7.093 F F 34 33 3.467 -4.984 -0.330 0.530 EE_DT10DC11:DG33DA34_FF 9 -3.302 4.699 40.867 1.317 0.094 3.271 42.282 E E 11 12 -0.959 F F 33 32 3.279 -0.692 0.437 1.357 EE_DC11DA12:DT32DG33_FF 10 1.664 -2.308 42.245 1.952 -0.435 2.978 28.067 E E 12 13 3.033 F F 32 31 2.997 1.470 -0.054 -0.307 EE_DA12DT13:DA31DT32_FF 11 -0.873 1.802 28.016 -0.950 -0.076 3.365 34.542 E E 13 14 3.413 F F 31 30 3.399 2.025 -0.061 -0.508 EE_DT13DT14:DA30DA31_FF 12 0.056 -0.094 34.484 -1.179 0.112 3.058 35.151 E E 14 15 4.024 F F 30 29 3.081 2.421 0.175 -0.180 EE_DT14DT15:DA29DA30_FF 13 4.880 -8.112 34.739 -0.639 0.398 3.667 39.025 E E 15 16 7.032 F F 29 28 3.671 4.685 0.700 -0.080 EE_DT15DA16:DT28DA29_FF 14 2.017 -3.027 38.703 -0.756 -0.774 3.146 30.482 E E 16 17 2.669 F F 28 27 3.146 1.402 -0.627 -0.615 EE_DA16DC17:DG27DT28_FF 15 -1.794 3.416 30.399 -1.439 0.847 3.216 37.553 E E 17 18 11.059 F F 27 26 3.322 7.080 0.006 -0.280 EE_DC17DA18:DT26DG27_FF 16 -0.379 0.591 36.902 -1.367 -0.060 2.986 29.707 E E 18 19 3.480 F F 26 25 3.062 1.779 -0.412 0.009 EE_DA18DC19:DG25DT26_FF 17 3.646 -7.132 29.435 -0.329 1.515 3.355 35.742 E E 19 20 10.891 F F 25 24 3.370 6.647 0.318 0.289 EE_DC19DG20:DC24DG25_FF 18 -1.152 1.888 35.120 -0.524 -0.690 2.944 31.880 E E 20 21 14.694 F F 24 23 3.158 7.956 0.473 -0.627 EE_DG20DC21:DG23DC24_FF 19 5.090 -9.401 30.483 -2.524 0.024 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model software struct_conn repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2002-12-11 1 1 2008-04-27 1 2 2011-07-13 1 3 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag CRYSTAL STRUCTURE OF A MATALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONS MAT A1/ALPHA2/DNA TERNARY COMPLEX (HOMEODOMAIN) YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE RCSB Y RCSB 2001-10-14 REL REL HOH water This sequence is derived from the STE6 promoter region, with the MCM1 binding sites removed. sample This sequence is derived from the STE6 promoter region, with the MCM1 binding sites removed. sample The sequence naturally occurs in yeast. The protein was synthesized by the FMOC method. sample 1APL PDB ENTRY 1APL PDB experimental model TIP 2 4 HOH HOH 22 E TIP 14 4 HOH HOH 23 E TIP 20 4 HOH HOH 24 E TIP 21 4 HOH HOH 25 E TIP 23 4 HOH HOH 26 E TIP 26 4 HOH HOH 27 E TIP 27 4 HOH HOH 28 E TIP 31 4 HOH HOH 29 E TIP 35 4 HOH HOH 30 E TIP 36 4 HOH HOH 31 E TIP 40 4 HOH HOH 32 E TIP 43 4 HOH HOH 33 E TIP 44 4 HOH HOH 34 E TIP 50 4 HOH HOH 35 E TIP 51 4 HOH HOH 36 E TIP 57 4 HOH HOH 37 E TIP 59 4 HOH HOH 38 E TIP 62 4 HOH HOH 39 E TIP 65 4 HOH HOH 40 E TIP 67 4 HOH HOH 41 E TIP 73 4 HOH HOH 42 E TIP 77 4 HOH HOH 43 E TIP 78 4 HOH HOH 44 E TIP 82 4 HOH HOH 45 E TIP 86 4 HOH HOH 46 E TIP 90 4 HOH HOH 47 E TIP 91 4 HOH HOH 48 E TIP 95 4 HOH HOH 49 E TIP 108 4 HOH HOH 50 E TIP 111 4 HOH HOH 51 E TIP 115 4 HOH HOH 52 E TIP 121 4 HOH HOH 53 E TIP 123 4 HOH HOH 54 E TIP 126 4 HOH HOH 55 E TIP 136 4 HOH HOH 56 E TIP 148 4 HOH HOH 57 E TIP 154 4 HOH HOH 58 E TIP 157 4 HOH HOH 59 E TIP 163 4 HOH HOH 60 E TIP 165 4 HOH HOH 61 E TIP 167 4 HOH HOH 62 E TIP 171 4 HOH HOH 63 E TIP 3 4 HOH HOH 43 F TIP 12 4 HOH HOH 44 F TIP 18 4 HOH HOH 45 F TIP 29 4 HOH HOH 46 F TIP 30 4 HOH HOH 47 F TIP 32 4 HOH HOH 48 F TIP 37 4 HOH HOH 49 F TIP 38 4 HOH HOH 50 F TIP 47 4 HOH HOH 51 F TIP 58 4 HOH HOH 52 F TIP 63 4 HOH HOH 53 F TIP 66 4 HOH HOH 54 F TIP 70 4 HOH HOH 55 F TIP 75 4 HOH HOH 56 F TIP 79 4 HOH HOH 57 F TIP 83 4 HOH HOH 58 F TIP 87 4 HOH HOH 59 F TIP 93 4 HOH HOH 60 F TIP 98 4 HOH HOH 61 F TIP 100 4 HOH HOH 62 F TIP 103 4 HOH HOH 63 F TIP 105 4 HOH HOH 64 F TIP 106 4 HOH HOH 65 F TIP 114 4 HOH HOH 66 F TIP 116 4 HOH HOH 67 F TIP 129 4 HOH HOH 68 F TIP 137 4 HOH HOH 69 F TIP 139 4 HOH HOH 70 F TIP 147 4 HOH HOH 71 F TIP 151 4 HOH HOH 72 F TIP 164 4 HOH HOH 73 F TIP 169 4 HOH HOH 74 F TIP 172 4 HOH HOH 75 F TIP 173 4 HOH HOH 76 F TIP 186 4 HOH HOH 77 F TIP 188 4 HOH HOH 78 F TIP 5 4 HOH HOH 192 A TIP 6 4 HOH HOH 193 A TIP 7 4 HOH HOH 194 A TIP 19 4 HOH HOH 195 A TIP 25 4 HOH HOH 196 A TIP 49 4 HOH HOH 197 A TIP 52 4 HOH HOH 198 A TIP 54 4 HOH HOH 199 A TIP 55 4 HOH HOH 200 A TIP 56 4 HOH HOH 201 A TIP 72 4 HOH HOH 202 A TIP 92 4 HOH HOH 203 A TIP 102 4 HOH HOH 204 A TIP 140 4 HOH HOH 205 A TIP 143 4 HOH HOH 206 A TIP 145 4 HOH HOH 207 A TIP 153 4 HOH HOH 208 A TIP 162 4 HOH HOH 209 A TIP 168 4 HOH HOH 210 A TIP 175 4 HOH HOH 211 A TIP 176 4 HOH HOH 212 A TIP 177 4 HOH HOH 213 A TIP 183 4 HOH HOH 214 A TIP 185 4 HOH HOH 215 A TIP 1 4 HOH HOH 192 B TIP 4 4 HOH HOH 193 B TIP 8 4 HOH HOH 194 B TIP 11 4 HOH HOH 195 B TIP 13 4 HOH HOH 196 B TIP 17 4 HOH HOH 197 B TIP 22 4 HOH HOH 198 B TIP 33 4 HOH HOH 199 B TIP 34 4 HOH HOH 200 B TIP 41 4 HOH HOH 201 B TIP 42 4 HOH HOH 202 B TIP 53 4 HOH HOH 203 B TIP 61 4 HOH HOH 204 B TIP 69 4 HOH HOH 205 B TIP 80 4 HOH HOH 206 B TIP 81 4 HOH HOH 207 B TIP 88 4 HOH HOH 208 B TIP 94 4 HOH HOH 209 B TIP 101 4 HOH HOH 210 B TIP 107 4 HOH HOH 211 B TIP 117 4 HOH HOH 212 B TIP 127 4 HOH HOH 213 B TIP 128 4 HOH HOH 214 B TIP 132 4 HOH HOH 215 B TIP 133 4 HOH HOH 216 B TIP 142 4 HOH HOH 217 B TIP 146 4 HOH HOH 218 B TIP 152 4 HOH HOH 219 B TIP 158 4 HOH HOH 220 B TIP 160 4 HOH HOH 221 B TIP 166 4 HOH HOH 222 B TIP 170 4 HOH HOH 223 B TIP 174 4 HOH HOH 224 B TIP 179 4 HOH HOH 225 B TIP 181 4 HOH HOH 226 B TIP 182 4 HOH HOH 227 B TIP 187 4 HOH HOH 228 B TIP 194 4 HOH HOH 229 B TIP 9 4 HOH HOH 192 C TIP 15 4 HOH HOH 193 C TIP 45 4 HOH HOH 194 C TIP 48 4 HOH HOH 195 C TIP 64 4 HOH HOH 196 C TIP 68 4 HOH HOH 197 C TIP 74 4 HOH HOH 198 C TIP 76 4 HOH HOH 199 C TIP 113 4 HOH HOH 200 C TIP 119 4 HOH HOH 201 C TIP 120 4 HOH HOH 202 C TIP 124 4 HOH HOH 203 C TIP 130 4 HOH HOH 204 C TIP 138 4 HOH HOH 205 C TIP 141 4 HOH HOH 206 C TIP 144 4 HOH HOH 207 C TIP 149 4 HOH HOH 208 C TIP 150 4 HOH HOH 209 C TIP 159 4 HOH HOH 210 C TIP 178 4 HOH HOH 211 C TIP 180 4 HOH HOH 212 C TIP 184 4 HOH HOH 213 C TIP 192 4 HOH HOH 214 C TIP 193 4 HOH HOH 215 C TIP 195 4 HOH HOH 216 C TIP 10 4 HOH HOH 192 D TIP 16 4 HOH HOH 193 D TIP 24 4 HOH HOH 194 D TIP 28 4 HOH HOH 195 D TIP 39 4 HOH HOH 196 D TIP 46 4 HOH HOH 197 D TIP 60 4 HOH HOH 198 D TIP 71 4 HOH HOH 199 D TIP 84 4 HOH HOH 200 D TIP 85 4 HOH HOH 201 D TIP 89 4 HOH HOH 202 D TIP 96 4 HOH HOH 203 D TIP 97 4 HOH HOH 204 D TIP 99 4 HOH HOH 205 D TIP 104 4 HOH HOH 206 D TIP 109 4 HOH HOH 207 D TIP 110 4 HOH HOH 208 D TIP 112 4 HOH HOH 209 D TIP 118 4 HOH HOH 210 D TIP 122 4 HOH HOH 211 D TIP 125 4 HOH HOH 212 D TIP 131 4 HOH HOH 213 D TIP 134 4 HOH HOH 214 D TIP 135 4 HOH HOH 215 D TIP 155 4 HOH HOH 216 D TIP 156 4 HOH HOH 217 D TIP 161 4 HOH HOH 218 D TIP 189 4 HOH HOH 219 D TIP 190 4 HOH HOH 220 D TIP 191 4 HOH HOH 221 D A 1 n 1 DA 1 E C 2 n 2 DC 2 E A 3 n 3 DA 3 E T 4 n 4 DT 4 E G 5 n 5 DG 5 E T 6 n 6 DT 6 E A 7 n 7 DA 7 E A 8 n 8 DA 8 E T 9 n 9 DT 9 E T 10 n 10 DT 10 E C 11 n 11 DC 11 E A 12 n 12 DA 12 E T 13 n 13 DT 13 E T 14 n 14 DT 14 E T 15 n 15 DT 15 E A 16 n 16 DA 16 E C 17 n 17 DC 17 E A 18 n 18 DA 18 E C 19 n 19 DC 19 E G 20 n 20 DG 20 E C 21 n 21 DC 21 E +U 22 n 1 5IU 22 F G 23 n 2 DG 23 F C 24 n 3 DC 24 F G 25 n 4 DG 25 F T 26 n 5 DT 26 F G 27 n 6 DG 27 F T 28 n 7 DT 28 F A 29 n 8 DA 29 F A 30 n 9 DA 30 F A 31 n 10 DA 31 F T 32 n 11 DT 32 F G 33 n 12 DG 33 F A 34 n 13 DA 34 F A 35 n 14 DA 35 F T 36 n 15 DT 36 F T 37 n 16 DT 37 F A 38 n 17 DA 38 F C 39 n 18 DC 39 F A 40 n 19 DA 40 F T 41 n 20 DT 41 F G 42 n 21 DG 42 F ARG 132 n 1 ARG 132 A GLY 133 n 2 GLY 133 A HIS 134 n 3 HIS 134 A ARG 135 n 4 ARG 135 A PHE 136 n 5 PHE 136 A THR 137 n 6 THR 137 A LYS 138 n 7 LYS 138 A GLU 139 n 8 GLU 139 A ASN 140 n 9 ASN 140 A VAL 141 n 10 VAL 141 A ARG 142 n 11 ARG 142 A ILE 143 n 12 ILE 143 A LEU 144 n 13 LEU 144 A GLU 145 n 14 GLU 145 A SER 146 n 15 SER 146 A TRP 147 n 16 TRP 147 A PHE 148 n 17 PHE 148 A ALA 149 n 18 ALA 149 A LYS 150 n 19 LYS 150 A ASN 151 n 20 ASN 151 A ILE 152 n 21 ILE 152 A GLU 153 n 22 GLU 153 A ASN 154 n 23 ASN 154 A PRO 155 n 24 PRO 155 A TYR 156 n 25 TYR 156 A LEU 157 n 26 LEU 157 A ASP 158 n 27 ASP 158 A THR 159 n 28 THR 159 A LYS 160 n 29 LYS 160 A GLY 161 n 30 GLY 161 A LEU 162 n 31 LEU 162 A GLU 163 n 32 GLU 163 A ASN 164 n 33 ASN 164 A LEU 165 n 34 LEU 165 A MET 166 n 35 MET 166 A LYS 167 n 36 LYS 167 A ASN 168 n 37 ASN 168 A THR 169 n 38 THR 169 A SER 170 n 39 SER 170 A LEU 171 n 40 LEU 171 A SER 172 n 41 SER 172 A ARG 173 n 42 ARG 173 A ILE 174 n 43 ILE 174 A GLN 175 n 44 GLN 175 A ILE 176 n 45 ILE 176 A LYS 177 n 46 LYS 177 A ASN 178 n 47 ASN 178 A TRP 179 n 48 TRP 179 A VAL 180 n 49 VAL 180 A SER 181 n 50 SER 181 A ASN 182 n 51 ASN 182 A ARG 183 n 52 ARG 183 A ARG 184 n 53 ARG 184 A ARG 185 n 54 ARG 185 A LYS 186 n 55 LYS 186 A GLU 187 n 56 GLU 187 A LYS 188 n 57 LYS 188 A THR 189 n 58 THR 189 A ILE 190 n 59 ILE 190 A THR 191 n 60 THR 191 A ARG 132 n 1 ARG 132 B GLY 133 n 2 GLY 133 B HIS 134 n 3 HIS 134 B ARG 135 n 4 ARG 135 B PHE 136 n 5 PHE 136 B THR 137 n 6 THR 137 B LYS 138 n 7 LYS 138 B GLU 139 n 8 GLU 139 B ASN 140 n 9 ASN 140 B VAL 141 n 10 VAL 141 B ARG 142 n 11 ARG 142 B ILE 143 n 12 ILE 143 B LEU 144 n 13 LEU 144 B GLU 145 n 14 GLU 145 B SER 146 n 15 SER 146 B TRP 147 n 16 TRP 147 B PHE 148 n 17 PHE 148 B ALA 149 n 18 ALA 149 B LYS 150 n 19 LYS 150 B ASN 151 n 20 ASN 151 B ILE 152 n 21 ILE 152 B GLU 153 n 22 GLU 153 B ASN 154 n 23 ASN 154 B PRO 155 n 24 PRO 155 B TYR 156 n 25 TYR 156 B LEU 157 n 26 LEU 157 B ASP 158 n 27 ASP 158 B THR 159 n 28 THR 159 B LYS 160 n 29 LYS 160 B GLY 161 n 30 GLY 161 B LEU 162 n 31 LEU 162 B GLU 163 n 32 GLU 163 B ASN 164 n 33 ASN 164 B LEU 165 n 34 LEU 165 B MET 166 n 35 MET 166 B LYS 167 n 36 LYS 167 B ASN 168 n 37 ASN 168 B THR 169 n 38 THR 169 B SER 170 n 39 SER 170 B LEU 171 n 40 LEU 171 B SER 172 n 41 SER 172 B ARG 173 n 42 ARG 173 B ILE 174 n 43 ILE 174 B GLN 175 n 44 GLN 175 B ILE 176 n 45 ILE 176 B LYS 177 n 46 LYS 177 B ASN 178 n 47 ASN 178 B TRP 179 n 48 TRP 179 B VAL 180 n 49 VAL 180 B SER 181 n 50 SER 181 B ASN 182 n 51 ASN 182 B ARG 183 n 52 ARG 183 B ARG 184 n 53 ARG 184 B ARG 185 n 54 ARG 185 B LYS 186 n 55 LYS 186 B GLU 187 n 56 GLU 187 B LYS 188 n 57 LYS 188 B THR 189 n 58 THR 189 B ILE 190 n 59 ILE 190 B n 60 191 B n 1 132 C n 2 133 C HIS 134 n 3 HIS 134 C ARG 135 n 4 ARG 135 C PHE 136 n 5 PHE 136 C THR 137 n 6 THR 137 C LYS 138 n 7 LYS 138 C GLU 139 n 8 GLU 139 C ASN 140 n 9 ASN 140 C VAL 141 n 10 VAL 141 C ARG 142 n 11 ARG 142 C ILE 143 n 12 ILE 143 C LEU 144 n 13 LEU 144 C GLU 145 n 14 GLU 145 C SER 146 n 15 SER 146 C TRP 147 n 16 TRP 147 C PHE 148 n 17 PHE 148 C ALA 149 n 18 ALA 149 C LYS 150 n 19 LYS 150 C ASN 151 n 20 ASN 151 C ILE 152 n 21 ILE 152 C GLU 153 n 22 GLU 153 C ASN 154 n 23 ASN 154 C PRO 155 n 24 PRO 155 C TYR 156 n 25 TYR 156 C LEU 157 n 26 LEU 157 C ASP 158 n 27 ASP 158 C THR 159 n 28 THR 159 C LYS 160 n 29 LYS 160 C GLY 161 n 30 GLY 161 C LEU 162 n 31 LEU 162 C GLU 163 n 32 GLU 163 C ASN 164 n 33 ASN 164 C LEU 165 n 34 LEU 165 C MET 166 n 35 MET 166 C LYS 167 n 36 LYS 167 C ASN 168 n 37 ASN 168 C THR 169 n 38 THR 169 C SER 170 n 39 SER 170 C LEU 171 n 40 LEU 171 C SER 172 n 41 SER 172 C ARG 173 n 42 ARG 173 C ILE 174 n 43 ILE 174 C GLN 175 n 44 GLN 175 C ILE 176 n 45 ILE 176 C LYS 177 n 46 LYS 177 C ASN 178 n 47 ASN 178 C TRP 179 n 48 TRP 179 C VAL 180 n 49 VAL 180 C SER 181 n 50 SER 181 C ASN 182 n 51 ASN 182 C ARG 183 n 52 ARG 183 C ARG 184 n 53 ARG 184 C ARG 185 n 54 ARG 185 C LYS 186 n 55 LYS 186 C GLU 187 n 56 GLU 187 C LYS 188 n 57 LYS 188 C THR 189 n 58 THR 189 C n 59 190 C n 60 191 C ARG 132 n 1 ARG 132 D GLY 133 n 2 GLY 133 D HIS 134 n 3 HIS 134 D ARG 135 n 4 ARG 135 D PHE 136 n 5 PHE 136 D THR 137 n 6 THR 137 D LYS 138 n 7 LYS 138 D GLU 139 n 8 GLU 139 D ASN 140 n 9 ASN 140 D VAL 141 n 10 VAL 141 D ARG 142 n 11 ARG 142 D ILE 143 n 12 ILE 143 D LEU 144 n 13 LEU 144 D GLU 145 n 14 GLU 145 D SER 146 n 15 SER 146 D TRP 147 n 16 TRP 147 D PHE 148 n 17 PHE 148 D ALA 149 n 18 ALA 149 D LYS 150 n 19 LYS 150 D ASN 151 n 20 ASN 151 D ILE 152 n 21 ILE 152 D GLU 153 n 22 GLU 153 D ASN 154 n 23 ASN 154 D PRO 155 n 24 PRO 155 D TYR 156 n 25 TYR 156 D LEU 157 n 26 LEU 157 D ASP 158 n 27 ASP 158 D THR 159 n 28 THR 159 D LYS 160 n 29 LYS 160 D GLY 161 n 30 GLY 161 D LEU 162 n 31 LEU 162 D GLU 163 n 32 GLU 163 D ASN 164 n 33 ASN 164 D LEU 165 n 34 LEU 165 D MET 166 n 35 MET 166 D LYS 167 n 36 LYS 167 D ASN 168 n 37 ASN 168 D THR 169 n 38 THR 169 D SER 170 n 39 SER 170 D LEU 171 n 40 LEU 171 D SER 172 n 41 SER 172 D ARG 173 n 42 ARG 173 D ILE 174 n 43 ILE 174 D GLN 175 n 44 GLN 175 D ILE 176 n 45 ILE 176 D LYS 177 n 46 LYS 177 D ASN 178 n 47 ASN 178 D TRP 179 n 48 TRP 179 D VAL 180 n 49 VAL 180 D SER 181 n 50 SER 181 D ASN 182 n 51 ASN 182 D ARG 183 n 52 ARG 183 D ARG 184 n 53 ARG 184 D ARG 185 n 54 ARG 185 D LYS 186 n 55 LYS 186 D GLU 187 n 56 GLU 187 D LYS 188 n 57 LYS 188 D THR 189 n 58 THR 189 D n 59 190 D n 60 191 D author_defined_assembly 6 hexameric F 5IU 22 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE B 5IU 1 DU 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG ARG 132 C CG ARG 1 1 Y 1 A CD ARG 132 C CD ARG 1 1 Y 1 A NE ARG 132 C NE ARG 1 1 Y 1 A CZ ARG 132 C CZ ARG 1 1 Y 1 A NH1 ARG 132 C NH1 ARG 1 1 Y 1 A NH2 ARG 132 C NH2 ARG 1 1 Y 1 A CG LYS 138 C CG LYS 7 1 Y 1 A CD LYS 138 C CD LYS 7 1 Y 1 A CE LYS 138 C CE LYS 7 1 Y 1 A NZ LYS 138 C NZ LYS 7 1 Y 1 A CG ARG 142 C CG ARG 11 1 Y 1 A CD ARG 142 C CD ARG 11 1 Y 1 A NE ARG 142 C NE ARG 11 1 Y 1 A CZ ARG 142 C CZ ARG 11 1 Y 1 A NH1 ARG 142 C NH1 ARG 11 1 Y 1 A NH2 ARG 142 C NH2 ARG 11 1 Y 1 A CG LYS 167 C CG LYS 36 1 Y 1 A CD LYS 167 C CD LYS 36 1 Y 1 A CE LYS 167 C CE LYS 36 1 Y 1 A NZ LYS 167 C NZ LYS 36 1 Y 1 A CG LYS 188 C CG LYS 57 1 Y 1 A CD LYS 188 C CD LYS 57 1 Y 1 A CE LYS 188 C CE LYS 57 1 Y 1 A NZ LYS 188 C NZ LYS 57 1 Y 1 A OG1 THR 191 C OG1 THR 60 1 Y 1 A CG2 THR 191 C CG2 THR 60 1 Y 1 B CG ARG 132 D CG ARG 1 1 Y 1 B CD ARG 132 D CD ARG 1 1 Y 1 B NE ARG 132 D NE ARG 1 1 Y 1 B CZ ARG 132 D CZ ARG 1 1 Y 1 B NH1 ARG 132 D NH1 ARG 1 1 Y 1 B NH2 ARG 132 D NH2 ARG 1 1 Y 1 B CG LYS 138 D CG LYS 7 1 Y 1 B CD LYS 138 D CD LYS 7 1 Y 1 B CE LYS 138 D CE LYS 7 1 Y 1 B NZ LYS 138 D NZ LYS 7 1 Y 1 B CG LYS 160 D CG LYS 29 1 Y 1 B CD LYS 160 D CD LYS 29 1 Y 1 B CE LYS 160 D CE LYS 29 1 Y 1 B NZ LYS 160 D NZ LYS 29 1 Y 1 B CG1 ILE 190 D CG1 ILE 59 1 Y 1 B CG2 ILE 190 D CG2 ILE 59 1 Y 1 B CD1 ILE 190 D CD1 ILE 59 1 Y 1 C CG HIS 134 E CG HIS 3 1 Y 1 C ND1 HIS 134 E ND1 HIS 3 1 Y 1 C CD2 HIS 134 E CD2 HIS 3 1 Y 1 C CE1 HIS 134 E CE1 HIS 3 1 Y 1 C NE2 HIS 134 E NE2 HIS 3 1 Y 1 C CG ARG 135 E CG ARG 4 1 Y 1 C CD ARG 135 E CD ARG 4 1 Y 1 C NE ARG 135 E NE ARG 4 1 Y 1 C CZ ARG 135 E CZ ARG 4 1 Y 1 C NH1 ARG 135 E NH1 ARG 4 1 Y 1 C NH2 ARG 135 E NH2 ARG 4 1 Y 1 C CG LYS 138 E CG LYS 7 1 Y 1 C CD LYS 138 E CD LYS 7 1 Y 1 C CE LYS 138 E CE LYS 7 1 Y 1 C NZ LYS 138 E NZ LYS 7 1 Y 1 C CG GLU 139 E CG GLU 8 1 Y 1 C CD GLU 139 E CD GLU 8 1 Y 1 C OE1 GLU 139 E OE1 GLU 8 1 Y 1 C OE2 GLU 139 E OE2 GLU 8 1 Y 1 C OG1 THR 189 E OG1 THR 58 1 Y 1 C CG2 THR 189 E CG2 THR 58 1 Y 1 D CG LYS 138 F CG LYS 7 1 Y 1 D CD LYS 138 F CD LYS 7 1 Y 1 D CE LYS 138 F CE LYS 7 1 Y 1 D NZ LYS 138 F NZ LYS 7 1 Y 1 D CG LYS 150 F CG LYS 19 1 Y 1 D CD LYS 150 F CD LYS 19 1 Y 1 D CE LYS 150 F CE LYS 19 1 Y 1 D NZ LYS 150 F NZ LYS 19 1 Y 1 D CG GLU 153 F CG GLU 22 1 Y 1 D CD GLU 153 F CD GLU 22 1 Y 1 D OE1 GLU 153 F OE1 GLU 22 1 Y 1 D OE2 GLU 153 F OE2 GLU 22 1 Y 1 D CG LYS 188 F CG LYS 57 1 Y 1 D CD LYS 188 F CD LYS 57 1 Y 1 D CE LYS 188 F CE LYS 57 1 Y 1 D NZ LYS 188 F NZ LYS 57 1 Y 1 D OG1 THR 189 F OG1 THR 58 1 Y 1 D CG2 THR 189 F CG2 THR 58 1 Y 1 B THR 191 D THR 60 1 Y 1 C ARG 132 E ARG 1 1 Y 1 C GLY 133 E GLY 2 1 Y 1 C ILE 190 E ILE 59 1 Y 1 C THR 191 E THR 60 1 Y 1 D ILE 190 F ILE 59 1 Y 1 D THR 191 F THR 60 1 Y 1 A HIS 134 24.12 -86.77 1 A ASN 154 -153.18 69.33 1 C ARG 135 57.06 129.19 1 C PRO 155 -72.40 43.64 1 C SER 170 80.44 18.06 1 D PRO 155 -68.01 64.90 PROTEIN_REP.PARAM PROTEIN.TOP I_DNA-RNA.PARAM I_DNA-RNA.TOP WATER_REP.PARAM 35.7 7.33 0.00 4.57 -1.09 0.00 -6.23 Refinement Target values for the DNA as described in: G.Parkinson, J.Vojtechovsky, L.Clowney, A.T.Brunger, H.M.Berman, New Parameters for the Refinement of Nucleic Acid Containing Structures, Acta Cryst. D, 52, 57-64 (1996). Modified for 5-iodouracil residue. 0.277 0.006 0.221 0.221 2.10 16.01 1976 20799 20065 9.8 96.6 RANDOM 23852424.02 0.000000 1 RESTRAINED THROUGHOUT 0.0 MIR and molecular replacement PDB ENTRY 1APL FLAT MODEL 44.8193 0.327842 0.38 0.28 20.00 0.33 0.21 2.10 16.01 195 2961 1 854 1911 0.006 1.1 17.3 1.11 1.40 1.50 2.19 2.00 1.93 2.00 2.71 2.50 0.348 0.020 0.26 2.23 312 2921 6 9.7 93.3 33.8 2.0 16 1K61 23364 23014 0 0 0.048 1 14 2.07 98.5 0.287 2.00 2.07 2.5 2897 2.3 81 data scaling SCALEPACK phasing AMoRE refinement CNS 1.0 MATALPHA2 HOMEODOMAIN BOUND TO DNA 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N A THR 137 C THR 6 HELX_P A ASN 151 C ASN 20 1 1 15 A ASP 158 C ASP 27 HELX_P A SER 170 C SER 39 1 2 13 A SER 172 C SER 41 HELX_P A THR 189 C THR 58 1 3 18 B THR 137 D THR 6 HELX_P B ASN 151 D ASN 20 1 4 15 B ASP 158 D ASP 27 HELX_P B SER 170 D SER 39 1 5 13 B SER 172 D SER 41 HELX_P B LYS 188 D LYS 57 1 6 17 C THR 137 E THR 6 HELX_P C ASN 151 E ASN 20 1 7 15 C ASP 158 E ASP 27 HELX_P C SER 170 E SER 39 1 8 13 C SER 172 E SER 41 HELX_P C THR 189 E THR 58 1 9 18 D THR 137 F THR 6 HELX_P D ASN 151 F ASN 20 1 10 15 D ASP 158 F ASP 27 HELX_P D SER 170 F SER 39 1 11 13 D SER 172 F SER 41 HELX_P D GLU 187 F GLU 56 1 12 16 covale 1.603 both F 5IU 22 B O3' 5IU 1 1_555 F DG 23 B P DG 2 1_555 hydrog WATSON-CRICK E DC 2 A N3 DC 2 1_555 F DG 42 B N1 DG 21 1_555 hydrog WATSON-CRICK E DC 2 A N4 DC 2 1_555 F DG 42 B O6 DG 21 1_555 hydrog WATSON-CRICK E DC 2 A O2 DC 2 1_555 F DG 42 B N2 DG 21 1_555 hydrog WATSON-CRICK E DA 3 A N1 DA 3 1_555 F DT 41 B N3 DT 20 1_555 hydrog WATSON-CRICK E DA 3 A N6 DA 3 1_555 F DT 41 B O4 DT 20 1_555 hydrog WATSON-CRICK E DT 4 A N3 DT 4 1_555 F DA 40 B N1 DA 19 1_555 hydrog WATSON-CRICK E DT 4 A O4 DT 4 1_555 F DA 40 B N6 DA 19 1_555 hydrog WATSON-CRICK E DG 5 A N1 DG 5 1_555 F DC 39 B N3 DC 18 1_555 hydrog WATSON-CRICK E DG 5 A N2 DG 5 1_555 F DC 39 B O2 DC 18 1_555 hydrog WATSON-CRICK E DG 5 A O6 DG 5 1_555 F DC 39 B N4 DC 18 1_555 hydrog WATSON-CRICK E DT 6 A N3 DT 6 1_555 F DA 38 B N1 DA 17 1_555 hydrog WATSON-CRICK E DT 6 A O4 DT 6 1_555 F DA 38 B N6 DA 17 1_555 hydrog HOOGSTEEN E DA 7 A N6 DA 7 1_555 F DT 37 B O4 DT 16 1_555 hydrog HOOGSTEEN E DA 7 A N7 DA 7 1_555 F DT 37 B N3 DT 16 1_555 hydrog WATSON-CRICK E DA 8 A N1 DA 8 1_555 F DT 36 B N3 DT 15 1_555 hydrog WATSON-CRICK E DA 8 A N6 DA 8 1_555 F DT 36 B O4 DT 15 1_555 hydrog WATSON-CRICK E DT 9 A N3 DT 9 1_555 F DA 35 B N1 DA 14 1_555 hydrog WATSON-CRICK E DT 9 A O4 DT 9 1_555 F DA 35 B N6 DA 14 1_555 hydrog WATSON-CRICK E DT 10 A N3 DT 10 1_555 F DA 34 B N1 DA 13 1_555 hydrog WATSON-CRICK E DT 10 A O4 DT 10 1_555 F DA 34 B N6 DA 13 1_555 hydrog WATSON-CRICK E DC 11 A N3 DC 11 1_555 F DG 33 B N1 DG 12 1_555 hydrog WATSON-CRICK E DC 11 A N4 DC 11 1_555 F DG 33 B O6 DG 12 1_555 hydrog WATSON-CRICK E DC 11 A O2 DC 11 1_555 F DG 33 B N2 DG 12 1_555 hydrog WATSON-CRICK E DA 12 A N1 DA 12 1_555 F DT 32 B N3 DT 11 1_555 hydrog WATSON-CRICK E DA 12 A N6 DA 12 1_555 F DT 32 B O4 DT 11 1_555 hydrog WATSON-CRICK E DT 13 A N3 DT 13 1_555 F DA 31 B N1 DA 10 1_555 hydrog WATSON-CRICK E DT 13 A O4 DT 13 1_555 F DA 31 B N6 DA 10 1_555 hydrog WATSON-CRICK E DT 14 A N3 DT 14 1_555 F DA 30 B N1 DA 9 1_555 hydrog WATSON-CRICK E DT 14 A O4 DT 14 1_555 F DA 30 B N6 DA 9 1_555 hydrog WATSON-CRICK E DT 15 A N3 DT 15 1_555 F DA 29 B N1 DA 8 1_555 hydrog WATSON-CRICK E DT 15 A O4 DT 15 1_555 F DA 29 B N6 DA 8 1_555 hydrog WATSON-CRICK E DA 16 A N1 DA 16 1_555 F DT 28 B N3 DT 7 1_555 hydrog WATSON-CRICK E DA 16 A N6 DA 16 1_555 F DT 28 B O4 DT 7 1_555 hydrog WATSON-CRICK E DC 17 A N3 DC 17 1_555 F DG 27 B N1 DG 6 1_555 hydrog WATSON-CRICK E DC 17 A N4 DC 17 1_555 F DG 27 B O6 DG 6 1_555 hydrog WATSON-CRICK E DC 17 A O2 DC 17 1_555 F DG 27 B N2 DG 6 1_555 hydrog WATSON-CRICK E DA 18 A N1 DA 18 1_555 F DT 26 B N3 DT 5 1_555 hydrog WATSON-CRICK E DA 18 A N6 DA 18 1_555 F DT 26 B O4 DT 5 1_555 hydrog WATSON-CRICK E DC 19 A N3 DC 19 1_555 F DG 25 B N1 DG 4 1_555 hydrog WATSON-CRICK E DC 19 A N4 DC 19 1_555 F DG 25 B O6 DG 4 1_555 hydrog WATSON-CRICK E DC 19 A O2 DC 19 1_555 F DG 25 B N2 DG 4 1_555 hydrog WATSON-CRICK E DG 20 A N1 DG 20 1_555 F DC 24 B N3 DC 3 1_555 hydrog WATSON-CRICK E DG 20 A N2 DG 20 1_555 F DC 24 B O2 DC 3 1_555 hydrog WATSON-CRICK E DG 20 A O6 DG 20 1_555 F DC 24 B N4 DC 3 1_555 hydrog WATSON-CRICK E DC 21 A N3 DC 21 1_555 F DG 23 B N1 DG 2 1_555 hydrog WATSON-CRICK E DC 21 A N4 DC 21 1_555 F DG 23 B O6 DG 2 1_555 hydrog WATSON-CRICK E DC 21 A O2 DC 21 1_555 F DG 23 B N2 DG 2 1_555 TRANSCRIPTION/DNA PROTEIN-DNA COMPLEX, HOMEODOMAIN, HOOGSTEEN BASE PAIR, TRANSCRIPTION-DNA COMPLEX MAT2_YEAST UNP 3 1 P01367 MNKIPIKDLLNPQITDEFKSSILDINKKLFSICCNLPKLPESVTTEEEVELRDILGFLSRANKNRKISDEEKKLLQTTSQ LTTTITVLLKEMRSIENDRSNYQLTQKNKSADGLVFNVVTQDMINKSTKPYRGHRFTKENVRILESWFAKNIENPYLDTK GLENLMKNTSLSRIQIKNWVSNRRRKEKTITIAPELADLLSGEPLAKKKE 1K61 PDB 1 1K61 1K61 PDB 2 1K61 132 191 1K61 132 191 P01367 A 1 1 60 132 191 1K61 132 191 P01367 B 1 1 60 132 191 1K61 132 191 P01367 C 1 1 60 132 191 1K61 132 191 P01367 D 1 1 60 1 21 1K61 1 21 1K61 E 2 1 21 22 42 1K61 22 42 1K61 F 3 1 21 4 P 1 21 1