1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Ferreon, J.
Volk, D.
Luxon, B.
Gorenstein, D.
Hilser, V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
R
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
C
N
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
42
5582
5591
10.1021/bi030005j
12741814
Solution Structure, Dynamics and Thermodynamics of the Native State Ensemble
of Sem-5 C-Terminal SH3 Domain
2003
10.2210/pdb1k76/pdb
pdb_00001k76
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
7237.967
SEX MUSCLE ABNORMAL PROTEIN 5
SH3 domain (Residues 155-214)
C57A
1
man
polymer
no
no
HMETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVAPYNSN
HMETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVAPYNSN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Caenorhabditis
Escherichia
sample
Sem-5
6239
Caenorhabditis elegans
562
Escherichia coli
BL21 pLysS
plasmid
pET19B
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Data collection
1
0
2003-05-20
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-10-27
1
4
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2001-10-18
REL
The structure was determined
using triple-resonance NMR spectroscopy
structures with the least restraint violations,structures with the lowest energy
50
1
3D 15N-NOESY-HSQC
3D 13C-NOESY-HSQC
100 mM NaCl
4.8
ambient
298
K
distance geometry
simulated annealing
molecular dynamics
minimized average structure
13C,15N 1mM Sem-5 SH3 domain
50 mM sodium acetate buffer,
10 mM CaCl2, 100 mM NaCl,pH 4.8, 90%h20, 10%d20
90%h20, 10%d20
Brunger
structure solution
CNS
1.0
MSI
processing
Felix
Varian
collection
VNMR
Brunger, et al.
refinement
CNS
400
Varian
UNITYPLUS
n
1
1
A
n
2
2
A
GLU
3
n
3
GLU
3
A
THR
4
n
4
THR
4
A
LYS
5
n
5
LYS
5
A
PHE
6
n
6
PHE
6
A
VAL
7
n
7
VAL
7
A
GLN
8
n
8
GLN
8
A
ALA
9
n
9
ALA
9
A
LEU
10
n
10
LEU
10
A
PHE
11
n
11
PHE
11
A
ASP
12
n
12
ASP
12
A
PHE
13
n
13
PHE
13
A
ASN
14
n
14
ASN
14
A
PRO
15
n
15
PRO
15
A
GLN
16
n
16
GLN
16
A
GLU
17
n
17
GLU
17
A
SER
18
n
18
SER
18
A
GLY
19
n
19
GLY
19
A
GLU
20
n
20
GLU
20
A
LEU
21
n
21
LEU
21
A
ALA
22
n
22
ALA
22
A
PHE
23
n
23
PHE
23
A
LYS
24
n
24
LYS
24
A
ARG
25
n
25
ARG
25
A
GLY
26
n
26
GLY
26
A
ASP
27
n
27
ASP
27
A
VAL
28
n
28
VAL
28
A
ILE
29
n
29
ILE
29
A
THR
30
n
30
THR
30
A
LEU
31
n
31
LEU
31
A
ILE
32
n
32
ILE
32
A
ASN
33
n
33
ASN
33
A
LYS
34
n
34
LYS
34
A
ASP
35
n
35
ASP
35
A
ASP
36
n
36
ASP
36
A
PRO
37
n
37
PRO
37
A
ASN
38
n
38
ASN
38
A
TRP
39
n
39
TRP
39
A
TRP
40
n
40
TRP
40
A
GLU
41
n
41
GLU
41
A
GLY
42
n
42
GLY
42
A
GLN
43
n
43
GLN
43
A
LEU
44
n
44
LEU
44
A
ASN
45
n
45
ASN
45
A
ASN
46
n
46
ASN
46
A
ARG
47
n
47
ARG
47
A
ARG
48
n
48
ARG
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
PHE
51
n
51
PHE
51
A
PRO
52
n
52
PRO
52
A
SER
53
n
53
SER
53
A
ASN
54
n
54
ASN
54
A
TYR
55
n
55
TYR
55
A
VAL
56
n
56
VAL
56
A
ALA
57
n
57
ALA
57
A
PRO
58
n
58
PRO
58
A
TYR
59
n
59
TYR
59
A
ASN
60
n
60
ASN
60
A
SER
61
n
61
SER
61
A
ASN
62
n
62
ASN
62
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLY
49
A
O
GLY
49
A
N
GLY
42
A
N
GLY
42
A
O
GLN
43
A
O
GLN
43
A
N
THR
30
A
N
THR
30
A
O
ILE
29
A
O
ILE
29
A
N
VAL
7
A
N
VAL
7
A
N
GLN
8
A
N
GLN
8
A
O
ALA
57
A
O
ALA
57
1
A
HIS
1
A
HIS
1
1
Y
1
A
MET
2
A
MET
2
1
Y
1
A
A
HE2
HG13
PHE
VAL
51
56
1.10
1
A
A
OD2
HD12
ASP
LEU
27
44
1.42
1
A
A
O
HA
SER
ASN
61
62
1.45
1
A
A
OD1
HD23
ASP
LEU
27
44
1.52
1
A
A
O
N
ASN
ASN
60
62
1.63
1
A
A
C
CA
SER
ASN
61
62
1.75
1
A
ARG
47
0.156
SIDE CHAIN
1
A
A
C
N
GLU
THR
3
4
1.15
1
A
A
C
N
ASN
SER
60
61
1.17
1
A
A
C
N
SER
ASN
61
62
1.15
1
-13.56
2.20
117.20
103.64
A
A
A
CA
C
N
GLU
GLU
THR
3
3
4
Y
1
-18.01
3.00
111.90
93.89
A
A
A
CG
CD
CE
LYS
LYS
LYS
5
5
5
N
1
-4.40
0.70
120.80
116.40
A
A
A
CB
CG
CD2
PHE
PHE
PHE
11
11
11
N
1
-29.99
2.60
111.60
81.61
A
A
A
CB
CG
CD
LYS
LYS
LYS
24
24
24
N
1
-7.62
0.50
120.30
112.68
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
25
25
25
N
1
3.34
0.50
120.30
123.64
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
25
25
25
N
1
-4.94
0.50
120.30
115.36
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
47
47
47
N
1
-7.14
0.50
120.30
113.16
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
48
48
48
N
1
-12.62
2.00
110.40
97.78
A
A
A
CB
CA
C
ASN
ASN
ASN
60
60
60
N
1
15.59
1.80
110.60
126.19
A
A
A
N
CA
CB
ASN
ASN
ASN
60
60
60
N
1
-15.38
2.20
117.20
101.82
A
A
A
CA
C
N
ASN
ASN
SER
60
60
61
Y
1
-23.46
2.50
121.70
98.24
A
A
A
C
N
CA
SER
ASN
ASN
61
62
62
Y
1
-23.94
2.20
113.40
89.46
A
A
A
CA
CB
CG
ASN
ASN
ASN
62
62
62
N
1
-22.90
2.70
111.00
88.10
A
A
A
N
CA
C
ASN
ASN
ASN
62
62
62
N
1
A
A
N
CA
GLU
GLU
3
3
-0.282
0.020
1.459
1.177
N
1
A
A
CA
CB
GLU
GLU
3
3
-0.138
0.022
1.535
1.397
N
1
A
A
CA
C
GLU
GLU
3
3
-0.273
0.026
1.525
1.252
N
1
A
A
C
N
GLU
THR
3
4
-0.184
0.023
1.336
1.152
Y
1
A
A
N
CA
THR
THR
4
4
-0.218
0.020
1.459
1.241
N
1
A
A
CB
CG
LYS
LYS
5
5
-0.192
0.027
1.521
1.329
N
1
A
A
CA
CB
LYS
LYS
24
24
-0.141
0.022
1.535
1.394
N
1
A
A
CD
NE
ARG
ARG
25
25
-0.136
0.017
1.460
1.324
N
1
A
A
NE
CZ
ARG
ARG
25
25
-0.105
0.013
1.326
1.221
N
1
A
A
CZ
NH1
ARG
ARG
47
47
0.115
0.013
1.326
1.441
N
1
A
A
CD
NE
ARG
ARG
48
48
-0.115
0.017
1.460
1.345
N
1
A
A
CA
C
ASN
ASN
60
60
-0.226
0.026
1.525
1.299
N
1
A
A
C
N
ASN
SER
60
61
-0.166
0.023
1.336
1.170
Y
1
A
A
N
CA
SER
SER
61
61
-0.254
0.020
1.459
1.205
N
1
A
A
CA
CB
SER
SER
61
61
-0.100
0.015
1.525
1.425
N
1
A
A
C
N
SER
ASN
61
62
-0.186
0.023
1.336
1.150
Y
1
A
A
N
CA
ASN
ASN
62
62
-0.290
0.020
1.459
1.169
N
1
A
LYS
24
-123.28
-166.19
1
A
ASN
45
79.65
-37.75
1
A
ASN
46
-171.78
-23.05
1
A
ALA
57
-161.34
114.65
1
A
ASN
60
38.54
62.24
1
A
SER
61
-25.22
94.93
refinement
CNS
minimized average
Solution Structure of the C-terminal Sem-5 SH3 Domain (Minimized Average Structure)
1
N
N
SIGNALING PROTEIN
all beta protein, SIGNALING PROTEIN
SEM5_CAEEL
UNP
1
155
P29355
ETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPYNSN
155
214
1K76
3
62
P29355
A
1
3
62
1
CYS
engineered mutation
ALA
57
1K76
A
P29355
UNP
209
57
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
47
A
ARG
47
A
PRO
52
A
PRO
52
A
TRP
39
A
TRP
39
A
LEU
44
A
LEU
44
A
VAL
28
A
VAL
28
A
ASN
33
A
ASN
33
A
PHE
6
A
PHE
6
A
ALA
9
A
ALA
9
A
VAL
56
A
VAL
56
A
PRO
58
A
PRO
58