0.012791
0.000000
0.000000
0.000000
0.012791
0.000000
0.000000
0.000000
0.012438
0.00000
0.00000
0.00000
Sanishvili, R.
Joachimiak, A.
Edwards, A.
Savchenko, A.
Skarina, T.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
78.180
78.180
80.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
374
1091
1103
10.1016/j.jmb.2007.10.012
17976651
Molecular basis of the antimutagenic activity of the house-cleaning inosine triphosphate pyrophosphatase RdgB from Escherichia coli.
2007
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
100
1
Double-crystal monochromator, mirror
CCD
2001-08-21
CUSTOM-MADE
Double-crystal monochromator, mirror
CCD
2001-09-10
CUSTOM-MADE
SAGITALLY FOCUSED Si(111)
MAD
M
x-ray
1
SAGITALLY FOCUSED Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97937
1.0
0.97918
1.0
1.03321
1.0
19-ID
APS
0.97937, 0.97918
SYNCHROTRON
APS BEAMLINE 19-ID
19-ID
APS
1.03321
SYNCHROTRON
APS BEAMLINE 19-ID
23871.471
Hypothetical protein yggV
1
man
polymer
18.015
water
252
nat
water
no
yes
MGSSHHHHHHSSGRENLYFQGH(MSE)QKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKA
RHAAKVTALPAIADDSGLAVDVLGGAPGIYSARYSGEDATDQKNLQKLLET(MSE)KDVPDDQRQARFHCVLVYLRHAED
PTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNGGS
MGSSHHHHHHSSGRENLYFQGHMQKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKARHAA
KVTALPAIADDSGLAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHG
SWPGVITREPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNGGS
A
APC074
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
2
2.57
52.18
VAPOR DIFFUSION
5.8
PEG4k, Am. Acetate, Na-Citrate, pH 5.8, VAPOR DIFFUSION
ambient
Midwest Center for Structural Genomics
MCSG
PSI, Protein Structure Initiative
repository
Initial release
Version format compliance
Version format compliance
1
0
2002-08-14
1
1
2008-04-27
1
2
2011-07-13
Y
RCSB
Y
RCSB
2001-10-19
REL
HOH
water
HOH
1
2
HOH
HOH
200
A
HOH
2
2
HOH
HOH
201
A
HOH
3
2
HOH
HOH
202
A
HOH
4
2
HOH
HOH
203
A
HOH
5
2
HOH
HOH
204
A
HOH
6
2
HOH
HOH
205
A
HOH
7
2
HOH
HOH
206
A
HOH
8
2
HOH
HOH
207
A
HOH
9
2
HOH
HOH
208
A
HOH
10
2
HOH
HOH
209
A
HOH
11
2
HOH
HOH
210
A
HOH
12
2
HOH
HOH
211
A
HOH
13
2
HOH
HOH
212
A
HOH
14
2
HOH
HOH
213
A
HOH
15
2
HOH
HOH
214
A
HOH
16
2
HOH
HOH
215
A
HOH
17
2
HOH
HOH
216
A
HOH
18
2
HOH
HOH
217
A
HOH
19
2
HOH
HOH
218
A
HOH
20
2
HOH
HOH
219
A
HOH
21
2
HOH
HOH
220
A
HOH
22
2
HOH
HOH
221
A
HOH
23
2
HOH
HOH
222
A
HOH
24
2
HOH
HOH
223
A
HOH
25
2
HOH
HOH
224
A
HOH
26
2
HOH
HOH
225
A
HOH
27
2
HOH
HOH
226
A
HOH
28
2
HOH
HOH
227
A
HOH
29
2
HOH
HOH
228
A
HOH
30
2
HOH
HOH
229
A
HOH
31
2
HOH
HOH
230
A
HOH
32
2
HOH
HOH
231
A
HOH
33
2
HOH
HOH
232
A
HOH
34
2
HOH
HOH
233
A
HOH
35
2
HOH
HOH
234
A
HOH
36
2
HOH
HOH
235
A
HOH
37
2
HOH
HOH
236
A
HOH
38
2
HOH
HOH
237
A
HOH
39
2
HOH
HOH
238
A
HOH
40
2
HOH
HOH
239
A
HOH
41
2
HOH
HOH
240
A
HOH
42
2
HOH
HOH
241
A
HOH
43
2
HOH
HOH
242
A
HOH
44
2
HOH
HOH
243
A
HOH
45
2
HOH
HOH
244
A
HOH
46
2
HOH
HOH
245
A
HOH
47
2
HOH
HOH
246
A
HOH
48
2
HOH
HOH
247
A
HOH
49
2
HOH
HOH
248
A
HOH
50
2
HOH
HOH
249
A
HOH
51
2
HOH
HOH
250
A
HOH
52
2
HOH
HOH
251
A
HOH
53
2
HOH
HOH
252
A
HOH
54
2
HOH
HOH
253
A
HOH
55
2
HOH
HOH
254
A
HOH
56
2
HOH
HOH
255
A
HOH
57
2
HOH
HOH
256
A
HOH
58
2
HOH
HOH
257
A
HOH
59
2
HOH
HOH
258
A
HOH
60
2
HOH
HOH
259
A
HOH
61
2
HOH
HOH
260
A
HOH
62
2
HOH
HOH
261
A
HOH
63
2
HOH
HOH
262
A
HOH
64
2
HOH
HOH
263
A
HOH
65
2
HOH
HOH
264
A
HOH
66
2
HOH
HOH
265
A
HOH
67
2
HOH
HOH
266
A
HOH
68
2
HOH
HOH
267
A
HOH
69
2
HOH
HOH
268
A
HOH
70
2
HOH
HOH
269
A
HOH
71
2
HOH
HOH
270
A
HOH
72
2
HOH
HOH
271
A
HOH
73
2
HOH
HOH
272
A
HOH
74
2
HOH
HOH
273
A
HOH
75
2
HOH
HOH
274
A
HOH
76
2
HOH
HOH
275
A
HOH
77
2
HOH
HOH
276
A
HOH
78
2
HOH
HOH
277
A
HOH
79
2
HOH
HOH
278
A
HOH
80
2
HOH
HOH
279
A
HOH
81
2
HOH
HOH
280
A
HOH
82
2
HOH
HOH
281
A
HOH
83
2
HOH
HOH
282
A
HOH
84
2
HOH
HOH
283
A
HOH
85
2
HOH
HOH
284
A
HOH
86
2
HOH
HOH
285
A
HOH
87
2
HOH
HOH
286
A
HOH
88
2
HOH
HOH
287
A
HOH
89
2
HOH
HOH
288
A
HOH
90
2
HOH
HOH
289
A
HOH
91
2
HOH
HOH
290
A
HOH
92
2
HOH
HOH
291
A
HOH
93
2
HOH
HOH
292
A
HOH
94
2
HOH
HOH
293
A
HOH
95
2
HOH
HOH
294
A
HOH
96
2
HOH
HOH
295
A
HOH
97
2
HOH
HOH
296
A
HOH
98
2
HOH
HOH
297
A
HOH
99
2
HOH
HOH
298
A
HOH
100
2
HOH
HOH
299
A
HOH
101
2
HOH
HOH
300
A
HOH
102
2
HOH
HOH
301
A
HOH
103
2
HOH
HOH
302
A
HOH
104
2
HOH
HOH
303
A
HOH
105
2
HOH
HOH
304
A
HOH
106
2
HOH
HOH
305
A
HOH
107
2
HOH
HOH
306
A
HOH
108
2
HOH
HOH
307
A
HOH
109
2
HOH
HOH
308
A
HOH
110
2
HOH
HOH
309
A
HOH
111
2
HOH
HOH
310
A
HOH
112
2
HOH
HOH
311
A
HOH
113
2
HOH
HOH
312
A
HOH
114
2
HOH
HOH
313
A
HOH
115
2
HOH
HOH
314
A
HOH
116
2
HOH
HOH
315
A
HOH
117
2
HOH
HOH
316
A
HOH
118
2
HOH
HOH
317
A
HOH
119
2
HOH
HOH
318
A
HOH
120
2
HOH
HOH
319
A
HOH
121
2
HOH
HOH
320
A
HOH
122
2
HOH
HOH
321
A
HOH
123
2
HOH
HOH
322
A
HOH
124
2
HOH
HOH
323
A
HOH
125
2
HOH
HOH
324
A
HOH
126
2
HOH
HOH
325
A
HOH
127
2
HOH
HOH
326
A
HOH
128
2
HOH
HOH
327
A
HOH
129
2
HOH
HOH
328
A
HOH
130
2
HOH
HOH
329
A
HOH
131
2
HOH
HOH
330
A
HOH
132
2
HOH
HOH
331
A
HOH
133
2
HOH
HOH
332
A
HOH
134
2
HOH
HOH
333
A
HOH
135
2
HOH
HOH
334
A
HOH
136
2
HOH
HOH
335
A
HOH
137
2
HOH
HOH
336
A
HOH
138
2
HOH
HOH
337
A
HOH
139
2
HOH
HOH
338
A
HOH
140
2
HOH
HOH
339
A
HOH
141
2
HOH
HOH
340
A
HOH
142
2
HOH
HOH
341
A
HOH
143
2
HOH
HOH
342
A
HOH
144
2
HOH
HOH
343
A
HOH
145
2
HOH
HOH
344
A
HOH
146
2
HOH
HOH
345
A
HOH
147
2
HOH
HOH
346
A
HOH
148
2
HOH
HOH
347
A
HOH
149
2
HOH
HOH
348
A
HOH
150
2
HOH
HOH
349
A
HOH
151
2
HOH
HOH
350
A
HOH
152
2
HOH
HOH
351
A
HOH
153
2
HOH
HOH
352
A
HOH
154
2
HOH
HOH
353
A
HOH
155
2
HOH
HOH
354
A
HOH
156
2
HOH
HOH
355
A
HOH
157
2
HOH
HOH
356
A
HOH
158
2
HOH
HOH
357
A
HOH
159
2
HOH
HOH
358
A
HOH
160
2
HOH
HOH
359
A
HOH
161
2
HOH
HOH
360
A
HOH
162
2
HOH
HOH
361
A
HOH
163
2
HOH
HOH
362
A
HOH
164
2
HOH
HOH
363
A
HOH
165
2
HOH
HOH
364
A
HOH
166
2
HOH
HOH
365
A
HOH
167
2
HOH
HOH
366
A
HOH
168
2
HOH
HOH
367
A
HOH
169
2
HOH
HOH
368
A
HOH
170
2
HOH
HOH
369
A
HOH
171
2
HOH
HOH
370
A
HOH
172
2
HOH
HOH
371
A
HOH
173
2
HOH
HOH
372
A
HOH
174
2
HOH
HOH
373
A
HOH
175
2
HOH
HOH
374
A
HOH
176
2
HOH
HOH
375
A
HOH
177
2
HOH
HOH
376
A
HOH
178
2
HOH
HOH
377
A
HOH
179
2
HOH
HOH
378
A
HOH
180
2
HOH
HOH
379
A
HOH
181
2
HOH
HOH
380
A
HOH
182
2
HOH
HOH
381
A
HOH
183
2
HOH
HOH
382
A
HOH
184
2
HOH
HOH
383
A
HOH
185
2
HOH
HOH
384
A
HOH
186
2
HOH
HOH
385
A
HOH
187
2
HOH
HOH
386
A
HOH
188
2
HOH
HOH
387
A
HOH
189
2
HOH
HOH
388
A
HOH
190
2
HOH
HOH
389
A
HOH
191
2
HOH
HOH
390
A
HOH
192
2
HOH
HOH
391
A
HOH
193
2
HOH
HOH
392
A
HOH
194
2
HOH
HOH
393
A
HOH
195
2
HOH
HOH
394
A
HOH
196
2
HOH
HOH
395
A
HOH
197
2
HOH
HOH
396
A
HOH
198
2
HOH
HOH
397
A
HOH
199
2
HOH
HOH
398
A
HOH
200
2
HOH
HOH
399
A
HOH
201
2
HOH
HOH
400
A
HOH
202
2
HOH
HOH
401
A
HOH
203
2
HOH
HOH
402
A
HOH
204
2
HOH
HOH
403
A
HOH
205
2
HOH
HOH
404
A
HOH
206
2
HOH
HOH
405
A
HOH
207
2
HOH
HOH
406
A
HOH
208
2
HOH
HOH
407
A
HOH
209
2
HOH
HOH
408
A
HOH
210
2
HOH
HOH
409
A
HOH
211
2
HOH
HOH
410
A
HOH
212
2
HOH
HOH
411
A
HOH
213
2
HOH
HOH
412
A
HOH
214
2
HOH
HOH
413
A
HOH
215
2
HOH
HOH
414
A
HOH
216
2
HOH
HOH
415
A
HOH
217
2
HOH
HOH
416
A
HOH
218
2
HOH
HOH
417
A
HOH
219
2
HOH
HOH
418
A
HOH
220
2
HOH
HOH
419
A
HOH
221
2
HOH
HOH
420
A
HOH
222
2
HOH
HOH
421
A
HOH
223
2
HOH
HOH
422
A
HOH
224
2
HOH
HOH
423
A
HOH
225
2
HOH
HOH
424
A
HOH
226
2
HOH
HOH
425
A
HOH
227
2
HOH
HOH
426
A
HOH
228
2
HOH
HOH
427
A
HOH
229
2
HOH
HOH
428
A
HOH
230
2
HOH
HOH
429
A
HOH
231
2
HOH
HOH
430
A
HOH
232
2
HOH
HOH
431
A
HOH
233
2
HOH
HOH
432
A
HOH
234
2
HOH
HOH
433
A
HOH
235
2
HOH
HOH
434
A
HOH
236
2
HOH
HOH
435
A
HOH
237
2
HOH
HOH
436
A
HOH
238
2
HOH
HOH
437
A
HOH
239
2
HOH
HOH
438
A
HOH
240
2
HOH
HOH
439
A
HOH
241
2
HOH
HOH
440
A
HOH
242
2
HOH
HOH
441
A
HOH
243
2
HOH
HOH
442
A
HOH
244
2
HOH
HOH
443
A
HOH
245
2
HOH
HOH
444
A
HOH
246
2
HOH
HOH
445
A
HOH
247
2
HOH
HOH
446
A
HOH
248
2
HOH
HOH
447
A
HOH
249
2
HOH
HOH
448
A
HOH
250
2
HOH
HOH
449
A
HOH
251
2
HOH
HOH
450
A
HOH
252
2
HOH
HOH
451
A
n
1
-21
A
n
2
-20
A
n
3
-19
A
n
4
-18
A
n
5
-17
A
n
6
-16
A
n
7
-15
A
n
8
-14
A
n
9
-13
A
n
10
-12
A
SER
-11
n
11
SER
-11
A
SER
-10
n
12
SER
-10
A
GLY
-9
n
13
GLY
-9
A
ARG
-8
n
14
ARG
-8
A
GLU
-7
n
15
GLU
-7
A
ASN
-6
n
16
ASN
-6
A
LEU
-5
n
17
LEU
-5
A
TYR
-4
n
18
TYR
-4
A
PHE
-3
n
19
PHE
-3
A
n
20
-2
A
n
21
-1
A
HIS
0
n
22
HIS
0
A
MSE
1
n
23
MSE
1
A
GLN
2
n
24
GLN
2
A
LYS
3
n
25
LYS
3
A
VAL
4
n
26
VAL
4
A
VAL
5
n
27
VAL
5
A
LEU
6
n
28
LEU
6
A
ALA
7
n
29
ALA
7
A
THR
8
n
30
THR
8
A
GLY
9
n
31
GLY
9
A
ASN
10
n
32
ASN
10
A
VAL
11
n
33
VAL
11
A
GLY
12
n
34
GLY
12
A
LYS
13
n
35
LYS
13
A
VAL
14
n
36
VAL
14
A
ARG
15
n
37
ARG
15
A
GLU
16
n
38
GLU
16
A
LEU
17
n
39
LEU
17
A
ALA
18
n
40
ALA
18
A
SER
19
n
41
SER
19
A
LEU
20
n
42
LEU
20
A
LEU
21
n
43
LEU
21
A
SER
22
n
44
SER
22
A
ASP
23
n
45
ASP
23
A
PHE
24
n
46
PHE
24
A
GLY
25
n
47
GLY
25
A
LEU
26
n
48
LEU
26
A
ASP
27
n
49
ASP
27
A
ILE
28
n
50
ILE
28
A
VAL
29
n
51
VAL
29
A
ALA
30
n
52
ALA
30
A
GLN
31
n
53
GLN
31
A
THR
32
n
54
THR
32
A
ASP
33
n
55
ASP
33
A
LEU
34
n
56
LEU
34
A
GLY
35
n
57
GLY
35
A
VAL
36
n
58
VAL
36
A
ASP
37
n
59
ASP
37
A
SER
38
n
60
SER
38
A
ALA
39
n
61
ALA
39
A
GLU
40
n
62
GLU
40
A
GLU
41
n
63
GLU
41
A
THR
42
n
64
THR
42
A
GLY
43
n
65
GLY
43
A
LEU
44
n
66
LEU
44
A
THR
45
n
67
THR
45
A
PHE
46
n
68
PHE
46
A
ILE
47
n
69
ILE
47
A
GLU
48
n
70
GLU
48
A
ASN
49
n
71
ASN
49
A
ALA
50
n
72
ALA
50
A
ILE
51
n
73
ILE
51
A
LEU
52
n
74
LEU
52
A
LYS
53
n
75
LYS
53
A
ALA
54
n
76
ALA
54
A
ARG
55
n
77
ARG
55
A
HIS
56
n
78
HIS
56
A
ALA
57
n
79
ALA
57
A
ALA
58
n
80
ALA
58
A
LYS
59
n
81
LYS
59
A
VAL
60
n
82
VAL
60
A
THR
61
n
83
THR
61
A
ALA
62
n
84
ALA
62
A
LEU
63
n
85
LEU
63
A
PRO
64
n
86
PRO
64
A
ALA
65
n
87
ALA
65
A
ILE
66
n
88
ILE
66
A
ALA
67
n
89
ALA
67
A
ASP
68
n
90
ASP
68
A
ASP
69
n
91
ASP
69
A
SER
70
n
92
SER
70
A
GLY
71
n
93
GLY
71
A
LEU
72
n
94
LEU
72
A
ALA
73
n
95
ALA
73
A
VAL
74
n
96
VAL
74
A
ASP
75
n
97
ASP
75
A
VAL
76
n
98
VAL
76
A
LEU
77
n
99
LEU
77
A
GLY
78
n
100
GLY
78
A
GLY
79
n
101
GLY
79
A
ALA
80
n
102
ALA
80
A
PRO
81
n
103
PRO
81
A
GLY
82
n
104
GLY
82
A
ILE
83
n
105
ILE
83
A
TYR
84
n
106
TYR
84
A
SER
85
n
107
SER
85
A
ALA
86
n
108
ALA
86
A
ARG
87
n
109
ARG
87
A
TYR
88
n
110
TYR
88
A
SER
89
n
111
SER
89
A
GLY
90
n
112
GLY
90
A
GLU
91
n
113
GLU
91
A
ASP
92
n
114
ASP
92
A
ALA
93
n
115
ALA
93
A
THR
94
n
116
THR
94
A
ASP
95
n
117
ASP
95
A
GLN
96
n
118
GLN
96
A
LYS
97
n
119
LYS
97
A
ASN
98
n
120
ASN
98
A
LEU
99
n
121
LEU
99
A
GLN
100
n
122
GLN
100
A
LYS
101
n
123
LYS
101
A
LEU
102
n
124
LEU
102
A
LEU
103
n
125
LEU
103
A
GLU
104
n
126
GLU
104
A
THR
105
n
127
THR
105
A
MSE
106
n
128
MSE
106
A
LYS
107
n
129
LYS
107
A
ASP
108
n
130
ASP
108
A
VAL
109
n
131
VAL
109
A
PRO
110
n
132
PRO
110
A
ASP
111
n
133
ASP
111
A
ASP
112
n
134
ASP
112
A
GLN
113
n
135
GLN
113
A
ARG
114
n
136
ARG
114
A
GLN
115
n
137
GLN
115
A
ALA
116
n
138
ALA
116
A
ARG
117
n
139
ARG
117
A
PHE
118
n
140
PHE
118
A
HIS
119
n
141
HIS
119
A
CYS
120
n
142
CYS
120
A
VAL
121
n
143
VAL
121
A
LEU
122
n
144
LEU
122
A
VAL
123
n
145
VAL
123
A
TYR
124
n
146
TYR
124
A
LEU
125
n
147
LEU
125
A
ARG
126
n
148
ARG
126
A
HIS
127
n
149
HIS
127
A
ALA
128
n
150
ALA
128
A
GLU
129
n
151
GLU
129
A
ASP
130
n
152
ASP
130
A
PRO
131
n
153
PRO
131
A
THR
132
n
154
THR
132
A
PRO
133
n
155
PRO
133
A
LEU
134
n
156
LEU
134
A
VAL
135
n
157
VAL
135
A
CYS
136
n
158
CYS
136
A
HIS
137
n
159
HIS
137
A
GLY
138
n
160
GLY
138
A
SER
139
n
161
SER
139
A
TRP
140
n
162
TRP
140
A
PRO
141
n
163
PRO
141
A
GLY
142
n
164
GLY
142
A
VAL
143
n
165
VAL
143
A
ILE
144
n
166
ILE
144
A
THR
145
n
167
THR
145
A
ARG
146
n
168
ARG
146
A
GLU
147
n
169
GLU
147
A
PRO
148
n
170
PRO
148
A
ALA
149
n
171
ALA
149
A
GLY
150
n
172
GLY
150
A
THR
151
n
173
THR
151
A
GLY
152
n
174
GLY
152
A
GLY
153
n
175
GLY
153
A
PHE
154
n
176
PHE
154
A
GLY
155
n
177
GLY
155
A
TYR
156
n
178
TYR
156
A
ASP
157
n
179
ASP
157
A
PRO
158
n
180
PRO
158
A
ILE
159
n
181
ILE
159
A
PHE
160
n
182
PHE
160
A
PHE
161
n
183
PHE
161
A
VAL
162
n
184
VAL
162
A
PRO
163
n
185
PRO
163
A
SER
164
n
186
SER
164
A
GLU
165
n
187
GLU
165
A
GLY
166
n
188
GLY
166
A
LYS
167
n
189
LYS
167
A
THR
168
n
190
THR
168
A
ALA
169
n
191
ALA
169
A
ALA
170
n
192
ALA
170
A
GLU
171
n
193
GLU
171
A
LEU
172
n
194
LEU
172
A
THR
173
n
195
THR
173
A
ARG
174
n
196
ARG
174
A
GLU
175
n
197
GLU
175
A
GLU
176
n
198
GLU
176
A
LYS
177
n
199
LYS
177
A
SER
178
n
200
SER
178
A
ALA
179
n
201
ALA
179
A
ILE
180
n
202
ILE
180
A
SER
181
n
203
SER
181
A
HIS
182
n
204
HIS
182
A
ARG
183
n
205
ARG
183
A
GLY
184
n
206
GLY
184
A
GLN
185
n
207
GLN
185
A
ALA
186
n
208
ALA
186
A
LEU
187
n
209
LEU
187
A
LYS
188
n
210
LYS
188
A
LEU
189
n
211
LEU
189
A
LEU
190
n
212
LEU
190
A
LEU
191
n
213
LEU
191
A
ASP
192
n
214
ASP
192
A
ALA
193
n
215
ALA
193
A
LEU
194
n
216
LEU
194
A
ARG
195
n
217
ARG
195
A
ASN
196
n
218
ASN
196
A
GLY
197
n
219
GLY
197
A
n
220
198
A
n
221
199
A
author_defined_assembly
1
monomeric
A
MSE
1
SELENOMETHIONINE
A
MSE
23
MET
A
MSE
106
SELENOMETHIONINE
A
MSE
128
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
29
A
O
VAL
51
A
N
LEU
6
A
N
LEU
28
A
N
VAL
5
A
N
VAL
27
A
O
ILE
66
A
O
ILE
88
A
N
ALA
67
A
N
ALA
89
A
O
VAL
123
A
O
VAL
145
A
N
LEU
122
A
N
LEU
144
A
O
CYS
136
A
O
CYS
158
A
N
VAL
143
A
N
VAL
165
A
O
PHE
161
A
O
PHE
183
1
A
OG
SER
-11
A
OG
SER
11
1
Y
1
A
CG
ARG
-8
A
CG
ARG
14
1
Y
1
A
CD
ARG
-8
A
CD
ARG
14
1
Y
1
A
NE
ARG
-8
A
NE
ARG
14
1
Y
1
A
CZ
ARG
-8
A
CZ
ARG
14
1
Y
1
A
NH1
ARG
-8
A
NH1
ARG
14
1
Y
1
A
NH2
ARG
-8
A
NH2
ARG
14
1
Y
1
A
CB
GLU
-7
A
CB
GLU
15
1
Y
1
A
CG
GLU
-7
A
CG
GLU
15
1
Y
1
A
CD
GLU
-7
A
CD
GLU
15
1
Y
1
A
OE1
GLU
-7
A
OE1
GLU
15
1
Y
1
A
OE2
GLU
-7
A
OE2
GLU
15
1
Y
1
A
CG
LEU
-5
A
CG
LEU
17
1
Y
1
A
CD1
LEU
-5
A
CD1
LEU
17
1
Y
1
A
CD2
LEU
-5
A
CD2
LEU
17
1
Y
1
A
CG
TYR
-4
A
CG
TYR
18
1
Y
1
A
CD1
TYR
-4
A
CD1
TYR
18
1
Y
1
A
CD2
TYR
-4
A
CD2
TYR
18
1
Y
1
A
CE1
TYR
-4
A
CE1
TYR
18
1
Y
1
A
CE2
TYR
-4
A
CE2
TYR
18
1
Y
1
A
CZ
TYR
-4
A
CZ
TYR
18
1
Y
1
A
OH
TYR
-4
A
OH
TYR
18
1
Y
1
A
CB
PHE
-3
A
CB
PHE
19
1
Y
1
A
CG
PHE
-3
A
CG
PHE
19
1
Y
1
A
CD1
PHE
-3
A
CD1
PHE
19
1
Y
1
A
CD2
PHE
-3
A
CD2
PHE
19
1
Y
1
A
CE1
PHE
-3
A
CE1
PHE
19
1
Y
1
A
CE2
PHE
-3
A
CE2
PHE
19
1
Y
1
A
CZ
PHE
-3
A
CZ
PHE
19
1
Y
1
A
CB
HIS
0
A
CB
HIS
22
1
Y
1
A
CG
HIS
0
A
CG
HIS
22
1
Y
1
A
ND1
HIS
0
A
ND1
HIS
22
1
Y
1
A
CD2
HIS
0
A
CD2
HIS
22
1
Y
1
A
CE1
HIS
0
A
CE1
HIS
22
1
Y
1
A
NE2
HIS
0
A
NE2
HIS
22
1
Y
1
A
OG
SER
22
A
OG
SER
44
1
Y
1
A
CG
ARG
174
A
CG
ARG
196
1
Y
1
A
CD
ARG
174
A
CD
ARG
196
1
Y
1
A
NE
ARG
174
A
NE
ARG
196
1
Y
1
A
CZ
ARG
174
A
CZ
ARG
196
1
Y
1
A
NH1
ARG
174
A
NH1
ARG
196
1
Y
1
A
NH2
ARG
174
A
NH2
ARG
196
1
Y
1
A
CG
LYS
188
A
CG
LYS
210
1
Y
1
A
CD
LYS
188
A
CD
LYS
210
1
Y
1
A
CE
LYS
188
A
CE
LYS
210
1
Y
1
A
NZ
LYS
188
A
NZ
LYS
210
1
Y
1
A
MET
-21
A
MET
1
1
Y
1
A
GLY
-20
A
GLY
2
1
Y
1
A
SER
-19
A
SER
3
1
Y
1
A
SER
-18
A
SER
4
1
Y
1
A
HIS
-17
A
HIS
5
1
Y
1
A
HIS
-16
A
HIS
6
1
Y
1
A
HIS
-15
A
HIS
7
1
Y
1
A
HIS
-14
A
HIS
8
1
Y
1
A
HIS
-13
A
HIS
9
1
Y
1
A
HIS
-12
A
HIS
10
1
Y
1
A
GLN
-2
A
GLN
20
1
Y
1
A
GLY
-1
A
GLY
21
1
Y
1
A
GLY
198
A
GLY
220
1
Y
1
A
SER
199
A
SER
221
1
Y
1
A
A
OE1
O
GLN
HOH
100
405
2.08
B
1
A
A
NZ
O
LYS
HOH
107
286
2.12
1
A
A
HIS
MSE
0
1
B
B
147.19
1
29.60
2.70
111.00
140.60
A
A
A
N
CA
C
HIS
HIS
HIS
0
0
0
B
B
B
N
1
5.44
0.90
118.30
123.74
A
A
A
CB
CG
OD2
ASP
ASP
ASP
23
23
23
A
A
A
N
1
-9.94
1.60
110.90
100.96
A
A
A
CG1
CB
CG2
VAL
VAL
VAL
29
29
29
A
A
N
1
6.34
0.90
118.30
124.64
A
A
A
CB
CG
OD2
ASP
ASP
ASP
37
37
37
N
1
6.22
0.90
118.30
124.52
A
A
A
CB
CG
OD2
ASP
ASP
ASP
69
69
69
N
1
5.80
0.90
118.30
124.10
A
A
A
CB
CG
OD2
ASP
ASP
ASP
192
192
192
B
B
B
N
1
A
SER
-10
-29.71
148.42
1
A
GLU
-7
111.18
-14.75
1
A
LEU
194
B
-69.32
39.54
1
A
ARG
195
B
-159.07
-23.61
16.815
-0.74
0.00
0.00
-0.74
0.00
1.47
used maximum likelihood method
0.2375100
0.2113500
0.2126100
1.500
55.09
1875
35524
5.1
92.68
2.585
0.098
0.087
RANDOM
1
THROUGHOUT
0
MAD
0.088
0.087
REFMAC defaults
1.500
55.09
255
1956
0
0
1701
0.767
1.176
2.125
2.895
0.2900000
0.2500000
1.539
127
2958
20
0.2570000
0.2290000
1.581
115
2859
20
0.2310000
0.2240000
1.627
123
2814
20
0.2480000
0.2150000
1.677
103
2698
20
0.2690000
0.2180000
1.732
121
2638
20
0.2620000
0.2230000
1.793
128
2540
20
0.2690000
0.2230000
1.860
99
2463
20
0.2640000
0.2200000
1.936
124
2376
20
0.3030000
0.2150000
2.022
113
2285
20
0.3030000
0.2190000
2.121
130
2210
20
0.2400000
0.2240000
2.235
102
2086
20
0.2220000
0.2130000
2.370
106
1978
20
0.2020000
0.2250000
2.534
90
1870
20
0.2440000
0.2190000
2.736
87
1751
20
0.2780000
0.2200000
2.997
76
1613
20
0.2300000
0.2290000
3.349
80
1482
20
0.2020000
0.2040000
3.865
66
1310
20
0.1690000
0.1790000
4.728
52
1131
20
0.2300000
0.2380000
6.663
36
897
20
0.3300000
0.2500000
55.902
18
550
20
1.45
60
1K7K
40104
40104
0
0.0600000
1,2
8.8
99.3
1.45
1.50
93.8
refinement
CNS
refinement
REFMAC
5.0
data reduction
d*TREK
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
Hypothetical protein yggV
crystal structure of RdgB- inosine triphosphate pyrophosphatase from E. coli
1
N
N
2
N
N
Molecule is alongated, with dominant beta sheet extending throughout.
There are additional beta strands at both ends of the beta sheet.
Several alpha helices surround the ends of beta-sheet, leaving
large groove on one side of the plane of the sheet.
A
ASN
10
A
ASN
32
HELX_P
A
SER
22
A
SER
44
1
1
13
A
THR
45
A
THR
67
HELX_P
A
ALA
62
A
ALA
84
1
2
18
A
VAL
76
A
VAL
98
HELX_P
A
GLY
78
A
GLY
100
5
3
3
A
PRO
81
A
PRO
103
HELX_P
A
SER
85
A
SER
107
5
4
5
A
THR
94
A
THR
116
HELX_P
A
MSE
106
A
MSE
128
1
5
13
A
PRO
110
A
PRO
132
HELX_P
A
GLN
113
A
GLN
135
5
6
4
A
TYR
156
A
TYR
178
HELX_P
A
PRO
158
A
PRO
180
5
7
3
A
VAL
162
A
VAL
184
HELX_P
A
GLY
166
A
GLY
188
5
8
5
A
THR
168
A
THR
190
HELX_P
A
LEU
172
A
LEU
194
5
9
5
A
THR
173
A
THR
195
HELX_P
A
SER
181
A
SER
203
1
10
9
A
SER
181
A
SER
203
HELX_P
A
ASN
196
A
ASN
218
1
11
16
covale
1.327
A
A
A
HIS
0
A
C
HIS
22
1_555
A
MSE
1
A
N
MSE
23
1_555
covale
1.318
B
B
A
HIS
0
A
C
HIS
22
1_555
A
MSE
1
A
N
MSE
23
1_555
covale
1.333
A
A
A
MSE
1
A
C
MSE
23
1_555
A
GLN
2
A
N
GLN
24
1_555
covale
1.331
B
B
A
MSE
1
A
C
MSE
23
1_555
A
GLN
2
A
N
GLN
24
1_555
covale
1.327
A
THR
105
A
C
THR
127
1_555
A
MSE
106
A
N
MSE
128
1_555
covale
1.328
A
MSE
106
A
C
MSE
128
1_555
A
LYS
107
A
N
LYS
129
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
MAD, His-tag, large groove, disordered Se-Met, structural genomics, Putative ribosomal protein, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION
A
ALA
80
A
ALA
102
1
A
PRO
81
A
PRO
103
-3.81
HAM1_ECOLI
UNP
1
1
P52061
MQKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKVTALPAIADDSGLAVDVLGGA
PGIYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIF
FVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG
1
197
1K7K
1
197
P52061
A
1
23
219
1
EXPRESSION TAG
MET
-21
1K7K
A
P52061
UNP
1
1
EXPRESSION TAG
GLY
-20
1K7K
A
P52061
UNP
2
1
EXPRESSION TAG
SER
-19
1K7K
A
P52061
UNP
3
1
EXPRESSION TAG
SER
-18
1K7K
A
P52061
UNP
4
1
EXPRESSION TAG
HIS
-17
1K7K
A
P52061
UNP
5
1
EXPRESSION TAG
HIS
-16
1K7K
A
P52061
UNP
6
1
EXPRESSION TAG
HIS
-15
1K7K
A
P52061
UNP
7
1
EXPRESSION TAG
HIS
-14
1K7K
A
P52061
UNP
8
1
EXPRESSION TAG
HIS
-13
1K7K
A
P52061
UNP
9
1
EXPRESSION TAG
HIS
-12
1K7K
A
P52061
UNP
10
1
EXPRESSION TAG
SER
-11
1K7K
A
P52061
UNP
11
1
EXPRESSION TAG
SER
-10
1K7K
A
P52061
UNP
12
1
EXPRESSION TAG
GLY
-9
1K7K
A
P52061
UNP
13
1
EXPRESSION TAG
ARG
-8
1K7K
A
P52061
UNP
14
1
EXPRESSION TAG
GLU
-7
1K7K
A
P52061
UNP
15
1
EXPRESSION TAG
ASN
-6
1K7K
A
P52061
UNP
16
1
EXPRESSION TAG
LEU
-5
1K7K
A
P52061
UNP
17
1
EXPRESSION TAG
TYR
-4
1K7K
A
P52061
UNP
18
1
EXPRESSION TAG
PHE
-3
1K7K
A
P52061
UNP
19
1
EXPRESSION TAG
GLN
-2
1K7K
A
P52061
UNP
20
1
EXPRESSION TAG
GLY
-1
1K7K
A
P52061
UNP
21
1
EXPRESSION TAG
HIS
0
1K7K
A
P52061
UNP
22
1
MET
MODIFIED RESIDUE
MSE
1
1K7K
A
P52061
UNP
1
23
1
MET
MODIFIED RESIDUE
MSE
106
1K7K
A
P52061
UNP
106
128
1
CLONING ARTIFACT
GLY
198
1K7K
A
P52061
UNP
220
1
CLONING ARTIFACT
SER
199
1K7K
A
P52061
UNP
221
6
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
26
A
LEU
48
A
ALA
30
A
ALA
52
A
GLN
2
A
GLN
24
A
LEU
6
A
LEU
28
A
ALA
65
A
ALA
87
A
VAL
74
A
VAL
96
A
GLN
115
A
GLN
137
A
LEU
125
A
LEU
147
A
LEU
134
A
LEU
156
A
ILE
144
A
ILE
166
A
PHE
160
A
PHE
182
A
PHE
161
A
PHE
183
96
P 43 21 2