0.022361
0.000000
0.008196
0.000000
0.010923
0.000000
0.000000
0.000000
0.023795
0.00000
0.00000
0.00000
Muraki, M.
Ishimura, M.
Harata, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
110.13
90.00
44.72
91.55
44.76
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C5 H7 N O3
129.114
n
PYROGLUTAMIC ACID
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
R
C
N
251
R
C
N
252
R
C
N
253
S
C
N
254
R
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
N
N
259
N
O
N
260
N
O
N
261
N
O
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
O
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
C
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
O
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
R
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
N
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
Y
294
N
doub
Y
295
N
sing
Y
296
N
sing
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
NE
Biochim.Biophys.Acta
BBACAQ
0113
0006-3002
1569
10
20
10.1016/S0304-4165(01)00231-8
11853952
Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence
2002
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
51
1013
1019
10.1107/S0907444995004070
X-ray structure of wheat germ agglutinin isolectin 3
1995
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
297
673
681
10.1006/jmbi.2000.3594
Crystal structures of Urtica dioica agglutinin and its complex with tri-N-acetylchitotriose
2000
UK
Protein Eng.
PRENE9
0859
0269-2139
13
385
389
10.1093/protein/13.6.385
Chemically prepared hevein domains: effect of C-terminal truncation and the mutagenesis of aromatic residues on the affinity for chitin
2000
10.2210/pdb1k7u/pdb
pdb_00001k7u
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
AREA DETECTOR
2000-12-30
ENRAF-NONIUS FAST
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
ENRAF-NONIUS FR571
18752.932
agglutinin isolectin 3
2
nat
polymer
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2
man
branched
18.015
water
89
nat
water
WGA3
no
yes
(PCA)RCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGA
GCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIG
PGYCGAGCQSGGCDGVFAEAIATNSTLLAE
QRCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQG
GPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYC
GAGCQSGGCDGVFAEAIATNSTLLAE
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
bread wheat
Triticum
sample
4565
Triticum aestivum
1
2.29
46.36
VAPOR DIFFUSION, SITTING DROP
4.9
sodium acetate, Calcium Chloride, Ethanol, pH 4.9, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
298.0
entity_poly
pdbx_struct_mod_residue
software
struct_conn
struct_ref_seq_dif
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Database references
Derived calculations
Polymer sequence
Refinement description
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2002-04-03
1
1
2008-04-27
1
2
2011-07-13
2
0
2019-12-25
3
0
2020-07-29
3
1
2024-04-03
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_struct_mod_residue.parent_comp_id
_struct_conn.pdbx_leaving_atom_flag
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
C
NAG
2
n
C
NAG
1
C
NAG
1
n
C
NAG
2
D
NAG
4
n
D
NAG
1
D
NAG
3
n
D
NAG
2
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
1WGT contains Wheat-Germ-Agglutinin Isolectin-3(WGA3)
1K7T contains crosslinked-WGA3/GlcNAcbeta1,6Gal complex
1K7V contains crosslinked-WGA3/GlcNAcbeta1,6Galbeta1,4Glc
RCSB
Y
PDBJ
2001-10-22
REL
REL
oligosaccharide
DGlcpNAcb1-4DGlcpNAcb1-ROH
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1
2
PDB2Glycan
1.1.0
WURCS
[][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}
2
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
n
n
HOH
water
Native WGA3
Other
experimental model
HOH
2
3
HOH
HOH
189
A
HOH
3
3
HOH
HOH
190
A
HOH
4
3
HOH
HOH
191
A
HOH
6
3
HOH
HOH
192
A
HOH
7
3
HOH
HOH
193
A
HOH
8
3
HOH
HOH
194
A
HOH
9
3
HOH
HOH
195
A
HOH
13
3
HOH
HOH
196
A
HOH
14
3
HOH
HOH
197
A
HOH
17
3
HOH
HOH
198
A
HOH
22
3
HOH
HOH
199
A
HOH
26
3
HOH
HOH
200
A
HOH
28
3
HOH
HOH
201
A
HOH
29
3
HOH
HOH
202
A
HOH
30
3
HOH
HOH
203
A
HOH
35
3
HOH
HOH
204
A
HOH
36
3
HOH
HOH
205
A
HOH
40
3
HOH
HOH
206
A
HOH
41
3
HOH
HOH
207
A
HOH
46
3
HOH
HOH
208
A
HOH
47
3
HOH
HOH
209
A
HOH
50
3
HOH
HOH
210
A
HOH
51
3
HOH
HOH
211
A
HOH
52
3
HOH
HOH
212
A
HOH
53
3
HOH
HOH
213
A
HOH
54
3
HOH
HOH
214
A
HOH
58
3
HOH
HOH
215
A
HOH
60
3
HOH
HOH
216
A
HOH
64
3
HOH
HOH
217
A
HOH
66
3
HOH
HOH
218
A
HOH
67
3
HOH
HOH
219
A
HOH
68
3
HOH
HOH
220
A
HOH
69
3
HOH
HOH
221
A
HOH
70
3
HOH
HOH
222
A
HOH
72
3
HOH
HOH
223
A
HOH
73
3
HOH
HOH
224
A
HOH
74
3
HOH
HOH
225
A
HOH
76
3
HOH
HOH
226
A
HOH
77
3
HOH
HOH
227
A
HOH
80
3
HOH
HOH
228
A
HOH
81
3
HOH
HOH
229
A
HOH
84
3
HOH
HOH
230
A
HOH
85
3
HOH
HOH
231
A
HOH
89
3
HOH
HOH
232
A
HOH
1
3
HOH
HOH
189
B
HOH
5
3
HOH
HOH
190
B
HOH
10
3
HOH
HOH
191
B
HOH
11
3
HOH
HOH
192
B
HOH
12
3
HOH
HOH
193
B
HOH
15
3
HOH
HOH
194
B
HOH
16
3
HOH
HOH
195
B
HOH
18
3
HOH
HOH
196
B
HOH
19
3
HOH
HOH
197
B
HOH
20
3
HOH
HOH
198
B
HOH
21
3
HOH
HOH
199
B
HOH
23
3
HOH
HOH
200
B
HOH
24
3
HOH
HOH
201
B
HOH
25
3
HOH
HOH
202
B
HOH
27
3
HOH
HOH
203
B
HOH
31
3
HOH
HOH
204
B
HOH
32
3
HOH
HOH
205
B
HOH
33
3
HOH
HOH
206
B
HOH
34
3
HOH
HOH
207
B
HOH
37
3
HOH
HOH
208
B
HOH
38
3
HOH
HOH
209
B
HOH
39
3
HOH
HOH
210
B
HOH
42
3
HOH
HOH
211
B
HOH
43
3
HOH
HOH
212
B
HOH
44
3
HOH
HOH
213
B
HOH
45
3
HOH
HOH
214
B
HOH
48
3
HOH
HOH
215
B
HOH
49
3
HOH
HOH
216
B
HOH
55
3
HOH
HOH
217
B
HOH
56
3
HOH
HOH
218
B
HOH
57
3
HOH
HOH
219
B
HOH
59
3
HOH
HOH
220
B
HOH
61
3
HOH
HOH
221
B
HOH
62
3
HOH
HOH
222
B
HOH
63
3
HOH
HOH
223
B
HOH
65
3
HOH
HOH
224
B
HOH
71
3
HOH
HOH
225
B
HOH
75
3
HOH
HOH
226
B
HOH
78
3
HOH
HOH
227
B
HOH
79
3
HOH
HOH
228
B
HOH
82
3
HOH
HOH
229
B
HOH
83
3
HOH
HOH
230
B
HOH
86
3
HOH
HOH
231
B
HOH
87
3
HOH
HOH
232
B
HOH
88
3
HOH
HOH
233
B
PCA
1
n
1
PCA
1
A
ARG
2
n
2
ARG
2
A
CYS
3
n
3
CYS
3
A
GLY
4
n
4
GLY
4
A
GLU
5
n
5
GLU
5
A
GLN
6
n
6
GLN
6
A
GLY
7
n
7
GLY
7
A
SER
8
n
8
SER
8
A
GLY
9
n
9
GLY
9
A
MET
10
n
10
MET
10
A
GLU
11
n
11
GLU
11
A
CYS
12
n
12
CYS
12
A
PRO
13
n
13
PRO
13
A
ASN
14
n
14
ASN
14
A
ASN
15
n
15
ASN
15
A
LEU
16
n
16
LEU
16
A
CYS
17
n
17
CYS
17
A
CYS
18
n
18
CYS
18
A
SER
19
n
19
SER
19
A
GLN
20
n
20
GLN
20
A
TYR
21
n
21
TYR
21
A
GLY
22
n
22
GLY
22
A
TYR
23
n
23
TYR
23
A
CYS
24
n
24
CYS
24
A
GLY
25
n
25
GLY
25
A
MET
26
n
26
MET
26
A
GLY
27
n
27
GLY
27
A
GLY
28
n
28
GLY
28
A
ASP
29
n
29
ASP
29
A
TYR
30
n
30
TYR
30
A
CYS
31
n
31
CYS
31
A
GLY
32
n
32
GLY
32
A
LYS
33
n
33
LYS
33
A
GLY
34
n
34
GLY
34
A
CYS
35
n
35
CYS
35
A
GLN
36
n
36
GLN
36
A
ASN
37
n
37
ASN
37
A
GLY
38
n
38
GLY
38
A
ALA
39
n
39
ALA
39
A
CYS
40
n
40
CYS
40
A
TRP
41
n
41
TRP
41
A
THR
42
n
42
THR
42
A
SER
43
n
43
SER
43
A
LYS
44
n
44
LYS
44
A
ARG
45
n
45
ARG
45
A
CYS
46
n
46
CYS
46
A
GLY
47
n
47
GLY
47
A
SER
48
n
48
SER
48
A
GLN
49
n
49
GLN
49
A
ALA
50
n
50
ALA
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
LYS
53
n
53
LYS
53
A
THR
54
n
54
THR
54
A
CYS
55
n
55
CYS
55
A
PRO
56
n
56
PRO
56
A
ASN
57
n
57
ASN
57
A
ASN
58
n
58
ASN
58
A
HIS
59
n
59
HIS
59
A
CYS
60
n
60
CYS
60
A
CYS
61
n
61
CYS
61
A
SER
62
n
62
SER
62
A
GLN
63
n
63
GLN
63
A
TYR
64
n
64
TYR
64
A
GLY
65
n
65
GLY
65
A
HIS
66
n
66
HIS
66
A
CYS
67
n
67
CYS
67
A
GLY
68
n
68
GLY
68
A
PHE
69
n
69
PHE
69
A
GLY
70
n
70
GLY
70
A
ALA
71
n
71
ALA
71
A
GLU
72
n
72
GLU
72
A
TYR
73
n
73
TYR
73
A
CYS
74
n
74
CYS
74
A
GLY
75
n
75
GLY
75
A
ALA
76
n
76
ALA
76
A
GLY
77
n
77
GLY
77
A
CYS
78
n
78
CYS
78
A
GLN
79
n
79
GLN
79
A
GLY
80
n
80
GLY
80
A
GLY
81
n
81
GLY
81
A
PRO
82
n
82
PRO
82
A
CYS
83
n
83
CYS
83
A
ARG
84
n
84
ARG
84
A
ALA
85
n
85
ALA
85
A
ASP
86
n
86
ASP
86
A
ILE
87
n
87
ILE
87
A
LYS
88
n
88
LYS
88
A
CYS
89
n
89
CYS
89
A
GLY
90
n
90
GLY
90
A
SER
91
n
91
SER
91
A
GLN
92
n
92
GLN
92
A
ALA
93
n
93
ALA
93
A
GLY
94
n
94
GLY
94
A
GLY
95
n
95
GLY
95
A
LYS
96
n
96
LYS
96
A
LEU
97
n
97
LEU
97
A
CYS
98
n
98
CYS
98
A
PRO
99
n
99
PRO
99
A
ASN
100
n
100
ASN
100
A
ASN
101
n
101
ASN
101
A
LEU
102
n
102
LEU
102
A
CYS
103
n
103
CYS
103
A
CYS
104
n
104
CYS
104
A
SER
105
n
105
SER
105
A
GLN
106
n
106
GLN
106
A
TRP
107
n
107
TRP
107
A
GLY
108
n
108
GLY
108
A
TYR
109
n
109
TYR
109
A
CYS
110
n
110
CYS
110
A
GLY
111
n
111
GLY
111
A
LEU
112
n
112
LEU
112
A
GLY
113
n
113
GLY
113
A
SER
114
n
114
SER
114
A
GLU
115
n
115
GLU
115
A
PHE
116
n
116
PHE
116
A
CYS
117
n
117
CYS
117
A
GLY
118
n
118
GLY
118
A
GLU
119
n
119
GLU
119
A
GLY
120
n
120
GLY
120
A
CYS
121
n
121
CYS
121
A
GLN
122
n
122
GLN
122
A
ASN
123
n
123
ASN
123
A
GLY
124
n
124
GLY
124
A
ALA
125
n
125
ALA
125
A
CYS
126
n
126
CYS
126
A
SER
127
n
127
SER
127
A
THR
128
n
128
THR
128
A
ASP
129
n
129
ASP
129
A
LYS
130
n
130
LYS
130
A
PRO
131
n
131
PRO
131
A
CYS
132
n
132
CYS
132
A
GLY
133
n
133
GLY
133
A
LYS
134
n
134
LYS
134
A
ASP
135
n
135
ASP
135
A
ALA
136
n
136
ALA
136
A
GLY
137
n
137
GLY
137
A
GLY
138
n
138
GLY
138
A
ARG
139
n
139
ARG
139
A
VAL
140
n
140
VAL
140
A
CYS
141
n
141
CYS
141
A
THR
142
n
142
THR
142
A
ASN
143
n
143
ASN
143
A
ASN
144
n
144
ASN
144
A
TYR
145
n
145
TYR
145
A
CYS
146
n
146
CYS
146
A
CYS
147
n
147
CYS
147
A
SER
148
n
148
SER
148
A
LYS
149
n
149
LYS
149
A
TRP
150
n
150
TRP
150
A
GLY
151
n
151
GLY
151
A
SER
152
n
152
SER
152
A
CYS
153
n
153
CYS
153
A
GLY
154
n
154
GLY
154
A
ILE
155
n
155
ILE
155
A
GLY
156
n
156
GLY
156
A
PRO
157
n
157
PRO
157
A
GLY
158
n
158
GLY
158
A
TYR
159
n
159
TYR
159
A
CYS
160
n
160
CYS
160
A
GLY
161
n
161
GLY
161
A
ALA
162
n
162
ALA
162
A
GLY
163
n
163
GLY
163
A
CYS
164
n
164
CYS
164
A
GLN
165
n
165
GLN
165
A
SER
166
n
166
SER
166
A
GLY
167
n
167
GLY
167
A
GLY
168
n
168
GLY
168
A
CYS
169
n
169
CYS
169
A
ASP
170
n
170
ASP
170
A
GLY
171
n
171
GLY
171
A
n
172
172
A
n
173
173
A
n
174
174
A
n
175
175
A
n
176
176
A
n
177
177
A
n
178
178
A
n
179
179
A
n
180
180
A
n
181
181
A
n
182
182
A
n
183
183
A
n
184
184
A
n
185
185
A
n
186
186
A
PCA
1
n
1
PCA
1
B
ARG
2
n
2
ARG
2
B
CYS
3
n
3
CYS
3
B
GLY
4
n
4
GLY
4
B
GLU
5
n
5
GLU
5
B
GLN
6
n
6
GLN
6
B
GLY
7
n
7
GLY
7
B
SER
8
n
8
SER
8
B
GLY
9
n
9
GLY
9
B
MET
10
n
10
MET
10
B
GLU
11
n
11
GLU
11
B
CYS
12
n
12
CYS
12
B
PRO
13
n
13
PRO
13
B
ASN
14
n
14
ASN
14
B
ASN
15
n
15
ASN
15
B
LEU
16
n
16
LEU
16
B
CYS
17
n
17
CYS
17
B
CYS
18
n
18
CYS
18
B
SER
19
n
19
SER
19
B
GLN
20
n
20
GLN
20
B
TYR
21
n
21
TYR
21
B
GLY
22
n
22
GLY
22
B
TYR
23
n
23
TYR
23
B
CYS
24
n
24
CYS
24
B
GLY
25
n
25
GLY
25
B
MET
26
n
26
MET
26
B
GLY
27
n
27
GLY
27
B
GLY
28
n
28
GLY
28
B
ASP
29
n
29
ASP
29
B
TYR
30
n
30
TYR
30
B
CYS
31
n
31
CYS
31
B
GLY
32
n
32
GLY
32
B
LYS
33
n
33
LYS
33
B
GLY
34
n
34
GLY
34
B
CYS
35
n
35
CYS
35
B
GLN
36
n
36
GLN
36
B
ASN
37
n
37
ASN
37
B
GLY
38
n
38
GLY
38
B
ALA
39
n
39
ALA
39
B
CYS
40
n
40
CYS
40
B
TRP
41
n
41
TRP
41
B
THR
42
n
42
THR
42
B
SER
43
n
43
SER
43
B
LYS
44
n
44
LYS
44
B
ARG
45
n
45
ARG
45
B
CYS
46
n
46
CYS
46
B
GLY
47
n
47
GLY
47
B
SER
48
n
48
SER
48
B
GLN
49
n
49
GLN
49
B
ALA
50
n
50
ALA
50
B
GLY
51
n
51
GLY
51
B
GLY
52
n
52
GLY
52
B
LYS
53
n
53
LYS
53
B
THR
54
n
54
THR
54
B
CYS
55
n
55
CYS
55
B
PRO
56
n
56
PRO
56
B
ASN
57
n
57
ASN
57
B
ASN
58
n
58
ASN
58
B
HIS
59
n
59
HIS
59
B
CYS
60
n
60
CYS
60
B
CYS
61
n
61
CYS
61
B
SER
62
n
62
SER
62
B
GLN
63
n
63
GLN
63
B
TYR
64
n
64
TYR
64
B
GLY
65
n
65
GLY
65
B
HIS
66
n
66
HIS
66
B
CYS
67
n
67
CYS
67
B
GLY
68
n
68
GLY
68
B
PHE
69
n
69
PHE
69
B
GLY
70
n
70
GLY
70
B
ALA
71
n
71
ALA
71
B
GLU
72
n
72
GLU
72
B
TYR
73
n
73
TYR
73
B
CYS
74
n
74
CYS
74
B
GLY
75
n
75
GLY
75
B
ALA
76
n
76
ALA
76
B
GLY
77
n
77
GLY
77
B
CYS
78
n
78
CYS
78
B
GLN
79
n
79
GLN
79
B
GLY
80
n
80
GLY
80
B
GLY
81
n
81
GLY
81
B
PRO
82
n
82
PRO
82
B
CYS
83
n
83
CYS
83
B
ARG
84
n
84
ARG
84
B
ALA
85
n
85
ALA
85
B
ASP
86
n
86
ASP
86
B
ILE
87
n
87
ILE
87
B
LYS
88
n
88
LYS
88
B
CYS
89
n
89
CYS
89
B
GLY
90
n
90
GLY
90
B
SER
91
n
91
SER
91
B
GLN
92
n
92
GLN
92
B
ALA
93
n
93
ALA
93
B
GLY
94
n
94
GLY
94
B
GLY
95
n
95
GLY
95
B
LYS
96
n
96
LYS
96
B
LEU
97
n
97
LEU
97
B
CYS
98
n
98
CYS
98
B
PRO
99
n
99
PRO
99
B
ASN
100
n
100
ASN
100
B
ASN
101
n
101
ASN
101
B
LEU
102
n
102
LEU
102
B
CYS
103
n
103
CYS
103
B
CYS
104
n
104
CYS
104
B
SER
105
n
105
SER
105
B
GLN
106
n
106
GLN
106
B
TRP
107
n
107
TRP
107
B
GLY
108
n
108
GLY
108
B
TYR
109
n
109
TYR
109
B
CYS
110
n
110
CYS
110
B
GLY
111
n
111
GLY
111
B
LEU
112
n
112
LEU
112
B
GLY
113
n
113
GLY
113
B
SER
114
n
114
SER
114
B
GLU
115
n
115
GLU
115
B
PHE
116
n
116
PHE
116
B
CYS
117
n
117
CYS
117
B
GLY
118
n
118
GLY
118
B
GLU
119
n
119
GLU
119
B
GLY
120
n
120
GLY
120
B
CYS
121
n
121
CYS
121
B
GLN
122
n
122
GLN
122
B
ASN
123
n
123
ASN
123
B
GLY
124
n
124
GLY
124
B
ALA
125
n
125
ALA
125
B
CYS
126
n
126
CYS
126
B
SER
127
n
127
SER
127
B
THR
128
n
128
THR
128
B
ASP
129
n
129
ASP
129
B
LYS
130
n
130
LYS
130
B
PRO
131
n
131
PRO
131
B
CYS
132
n
132
CYS
132
B
GLY
133
n
133
GLY
133
B
LYS
134
n
134
LYS
134
B
ASP
135
n
135
ASP
135
B
ALA
136
n
136
ALA
136
B
GLY
137
n
137
GLY
137
B
GLY
138
n
138
GLY
138
B
ARG
139
n
139
ARG
139
B
VAL
140
n
140
VAL
140
B
CYS
141
n
141
CYS
141
B
THR
142
n
142
THR
142
B
ASN
143
n
143
ASN
143
B
ASN
144
n
144
ASN
144
B
TYR
145
n
145
TYR
145
B
CYS
146
n
146
CYS
146
B
CYS
147
n
147
CYS
147
B
SER
148
n
148
SER
148
B
LYS
149
n
149
LYS
149
B
TRP
150
n
150
TRP
150
B
GLY
151
n
151
GLY
151
B
SER
152
n
152
SER
152
B
CYS
153
n
153
CYS
153
B
GLY
154
n
154
GLY
154
B
ILE
155
n
155
ILE
155
B
GLY
156
n
156
GLY
156
B
PRO
157
n
157
PRO
157
B
GLY
158
n
158
GLY
158
B
TYR
159
n
159
TYR
159
B
CYS
160
n
160
CYS
160
B
GLY
161
n
161
GLY
161
B
ALA
162
n
162
ALA
162
B
GLY
163
n
163
GLY
163
B
CYS
164
n
164
CYS
164
B
GLN
165
n
165
GLN
165
B
SER
166
n
166
SER
166
B
GLY
167
n
167
GLY
167
B
GLY
168
n
168
GLY
168
B
CYS
169
n
169
CYS
169
B
ASP
170
n
170
ASP
170
B
GLY
171
n
171
GLY
171
B
n
172
172
B
n
173
173
B
n
174
174
B
n
175
175
B
n
176
176
B
n
177
177
B
n
178
178
B
n
179
179
B
n
180
180
B
n
181
181
B
n
182
182
B
n
183
183
B
n
184
184
B
n
185
185
B
n
186
186
B
author_and_software_defined_assembly
PISA
2
dimeric
4880
-22
15810
A
PCA
1
PYROGLUTAMIC ACID
A
PCA
1
GLN
B
PCA
1
PYROGLUTAMIC ACID
B
PCA
1
GLN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
CYS
17
A
N
CYS
17
A
O
GLY
25
A
O
GLY
25
A
N
CYS
60
A
N
CYS
60
A
O
GLY
68
A
O
GLY
68
A
N
CYS
103
A
N
CYS
103
A
O
GLY
111
A
O
GLY
111
A
N
CYS
146
A
N
CYS
146
A
O
GLY
154
A
O
GLY
154
B
N
CYS
17
B
N
CYS
17
B
O
GLY
25
B
O
GLY
25
B
N
CYS
60
B
N
CYS
60
B
O
GLY
68
B
O
GLY
68
B
N
ILE
87
B
N
ILE
87
B
O
CYS
110
B
O
CYS
110
B
O
GLY
111
B
O
GLY
111
B
N
CYS
103
B
N
CYS
103
B
N
CYS
146
B
N
CYS
146
B
O
GLY
154
B
O
GLY
154
1
A
VAL
172
A
VAL
172
1
Y
1
A
PHE
173
A
PHE
173
1
Y
1
A
ALA
174
A
ALA
174
1
Y
1
A
GLU
175
A
GLU
175
1
Y
1
A
ALA
176
A
ALA
176
1
Y
1
A
ILE
177
A
ILE
177
1
Y
1
A
ALA
178
A
ALA
178
1
Y
1
A
THR
179
A
THR
179
1
Y
1
A
ASN
180
A
ASN
180
1
Y
1
A
SER
181
A
SER
181
1
Y
1
A
THR
182
A
THR
182
1
Y
1
A
LEU
183
A
LEU
183
1
Y
1
A
LEU
184
A
LEU
184
1
Y
1
A
ALA
185
A
ALA
185
1
Y
1
A
GLU
186
A
GLU
186
1
Y
1
B
VAL
172
B
VAL
172
1
Y
1
B
PHE
173
B
PHE
173
1
Y
1
B
ALA
174
B
ALA
174
1
Y
1
B
GLU
175
B
GLU
175
1
Y
1
B
ALA
176
B
ALA
176
1
Y
1
B
ILE
177
B
ILE
177
1
Y
1
B
ALA
178
B
ALA
178
1
Y
1
B
THR
179
B
THR
179
1
Y
1
B
ASN
180
B
ASN
180
1
Y
1
B
SER
181
B
SER
181
1
Y
1
B
THR
182
B
THR
182
1
Y
1
B
LEU
183
B
LEU
183
1
Y
1
B
LEU
184
B
LEU
184
1
Y
1
B
ALA
185
B
ALA
185
1
Y
1
B
GLU
186
B
GLU
186
1
Y
1
6.85
1.10
114.20
121.05
A
A
A
CA
CB
SG
CYS
CYS
CYS
121
121
121
N
1
A
SER
8
75.07
51.27
1
A
ASN
14
46.76
25.78
1
A
SER
19
-49.47
175.68
1
A
CYS
35
-13.32
118.12
1
A
THR
54
-26.85
142.92
1
A
TYR
73
-90.51
-62.93
1
A
CYS
89
175.35
177.71
1
A
ALA
93
163.95
-12.33
1
A
ASN
123
178.14
158.50
1
A
ALA
125
-77.36
48.83
1
A
ASP
135
-87.65
35.01
1
A
ALA
136
-162.88
45.68
1
A
ASN
143
52.40
13.47
1
A
SER
148
-56.88
170.57
1
A
ASP
170
-104.76
45.81
1
B
CYS
35
-35.09
123.16
1
B
CYS
46
179.86
-177.53
1
B
ASN
57
43.05
21.25
1
B
ASN
58
62.47
62.02
1
B
ALA
71
-22.36
-51.83
1
B
CYS
78
-33.26
94.23
1
B
PRO
82
-68.21
63.16
1
B
CYS
121
-29.36
126.64
1
B
ASP
135
-48.80
-16.56
1
B
ALA
136
-163.89
77.00
1
B
ASN
143
54.08
16.56
1
B
SER
148
-89.51
-154.21
1
B
SER
166
174.35
164.34
1
B
ASP
170
-75.81
-95.97
24.78
Average B-value are for protein atoms
0.306
0.242
2.2
8.0
1365
13652
10
random
1
2
MOLECULAR REPLACEMENT
Native WGA3
0.25
2.2
8.0
89
2493
58
0
2346
0.014
1.91
24.0
1.74
2.2
31.0
1K7U
34763
0
0.101
1
2.19
0.217
2.20
2.24
1
data collection
MADNESS
model building
X-PLOR
refinement
X-PLOR
3.1
data reduction
MADNESS
phasing
X-PLOR
Crystal Structure Analysis of crosslinked-WGA3/GlcNAcbeta1,4GlcNAc complex
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
CYS
12
A
CYS
12
HELX_P
A
LEU
16
A
LEU
16
5
1
5
A
GLY
27
A
GLY
27
HELX_P
A
GLY
32
A
GLY
32
1
2
6
A
CYS
46
A
CYS
46
HELX_P
A
GLY
51
A
GLY
51
1
3
6
A
GLY
70
A
GLY
70
HELX_P
A
GLY
75
A
GLY
75
1
4
6
A
GLY
113
A
GLY
113
HELX_P
A
GLY
118
A
GLY
118
1
5
6
A
GLY
133
A
GLY
133
HELX_P
A
GLY
137
A
GLY
137
5
6
5
A
GLY
156
A
GLY
156
HELX_P
A
GLY
161
A
GLY
161
1
7
6
B
CYS
3
B
CYS
3
HELX_P
B
SER
8
B
SER
8
5
8
6
B
CYS
12
B
CYS
12
HELX_P
B
LEU
16
B
LEU
16
5
9
5
B
GLY
27
B
GLY
27
HELX_P
B
GLY
32
B
GLY
32
1
10
6
B
CYS
46
B
CYS
46
HELX_P
B
GLY
51
B
GLY
51
5
11
6
B
CYS
55
B
CYS
55
HELX_P
B
HIS
59
B
HIS
59
5
12
5
B
GLY
70
B
GLY
70
HELX_P
B
GLY
75
B
GLY
75
1
13
6
B
GLY
113
B
GLY
113
HELX_P
B
GLY
118
B
GLY
118
1
14
6
B
GLY
133
B
GLY
133
HELX_P
B
GLY
137
B
GLY
137
5
15
5
B
CYS
141
B
CYS
141
HELX_P
B
TYR
145
B
TYR
145
5
16
5
B
GLY
156
B
GLY
156
HELX_P
B
GLY
161
B
GLY
161
1
17
6
disulf
1.996
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
18
A
SG
CYS
18
1_555
disulf
2.040
A
CYS
12
A
SG
CYS
12
1_555
A
CYS
24
A
SG
CYS
24
1_555
disulf
2.021
A
CYS
17
A
SG
CYS
17
1_555
A
CYS
31
A
SG
CYS
31
1_555
disulf
2.023
A
CYS
35
A
SG
CYS
35
1_555
A
CYS
40
A
SG
CYS
40
1_555
disulf
2.015
A
CYS
46
A
SG
CYS
46
1_555
A
CYS
61
A
SG
CYS
61
1_555
disulf
2.033
A
CYS
55
A
SG
CYS
55
1_555
A
CYS
67
A
SG
CYS
67
1_555
disulf
2.017
A
CYS
60
A
SG
CYS
60
1_555
A
CYS
74
A
SG
CYS
74
1_555
disulf
2.029
A
CYS
78
A
SG
CYS
78
1_555
A
CYS
83
A
SG
CYS
83
1_555
disulf
2.010
A
CYS
89
A
SG
CYS
89
1_555
A
CYS
104
A
SG
CYS
104
1_555
disulf
2.030
A
CYS
98
A
SG
CYS
98
1_555
A
CYS
110
A
SG
CYS
110
1_555
disulf
2.005
A
CYS
103
A
SG
CYS
103
1_555
A
CYS
117
A
SG
CYS
117
1_555
disulf
2.006
A
CYS
121
A
SG
CYS
121
1_555
A
CYS
126
A
SG
CYS
126
1_555
disulf
2.012
A
CYS
132
A
SG
CYS
132
1_555
A
CYS
147
A
SG
CYS
147
1_555
disulf
2.026
A
CYS
141
A
SG
CYS
141
1_555
A
CYS
153
A
SG
CYS
153
1_555
disulf
2.003
A
CYS
146
A
SG
CYS
146
1_555
A
CYS
160
A
SG
CYS
160
1_555
disulf
2.037
A
CYS
164
A
SG
CYS
164
1_555
A
CYS
169
A
SG
CYS
169
1_555
disulf
2.012
B
CYS
3
B
SG
CYS
3
1_555
B
CYS
18
B
SG
CYS
18
1_555
disulf
2.021
B
CYS
12
B
SG
CYS
12
1_555
B
CYS
24
B
SG
CYS
24
1_555
disulf
2.039
B
CYS
17
B
SG
CYS
17
1_555
B
CYS
31
B
SG
CYS
31
1_555
disulf
2.012
B
CYS
35
B
SG
CYS
35
1_555
B
CYS
40
B
SG
CYS
40
1_555
disulf
2.020
B
CYS
46
B
SG
CYS
46
1_555
B
CYS
61
B
SG
CYS
61
1_555
disulf
2.031
B
CYS
55
B
SG
CYS
55
1_555
B
CYS
67
B
SG
CYS
67
1_555
disulf
2.025
B
CYS
60
B
SG
CYS
60
1_555
B
CYS
74
B
SG
CYS
74
1_555
disulf
2.014
B
CYS
78
B
SG
CYS
78
1_555
B
CYS
83
B
SG
CYS
83
1_555
disulf
2.005
B
CYS
89
B
SG
CYS
89
1_555
B
CYS
104
B
SG
CYS
104
1_555
disulf
2.025
B
CYS
98
B
SG
CYS
98
1_555
B
CYS
110
B
SG
CYS
110
1_555
disulf
2.003
B
CYS
103
B
SG
CYS
103
1_555
B
CYS
117
B
SG
CYS
117
1_555
disulf
1.982
B
CYS
121
B
SG
CYS
121
1_555
B
CYS
126
B
SG
CYS
126
1_555
disulf
2.024
B
CYS
132
B
SG
CYS
132
1_555
B
CYS
147
B
SG
CYS
147
1_555
disulf
2.018
B
CYS
141
B
SG
CYS
141
1_555
B
CYS
153
B
SG
CYS
153
1_555
disulf
2.032
B
CYS
146
B
SG
CYS
146
1_555
B
CYS
160
B
SG
CYS
160
1_555
disulf
2.013
B
CYS
164
B
SG
CYS
164
1_555
B
CYS
169
B
SG
CYS
169
1_555
covale
1.291
both
A
PCA
1
A
C
PCA
1
1_555
A
ARG
2
A
N
ARG
2
1_555
covale
1.341
both
B
PCA
1
B
C
PCA
1
1_555
B
ARG
2
B
N
ARG
2
1_555
covale
1.380
both
C
NAG
1
C
O4
NAG
1_555
C
NAG
2
C
C1
NAG
1_555
covale
1.368
both
D
NAG
1
D
O4
NAG
1_555
D
NAG
2
D
C1
NAG
1_555
SUGAR BINDING PROTEIN
Hevein-type fold, SUGAR BINDING PROTEIN
AGI3_WHEAT
UNP
1
P10969
QRCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQG
GPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYC
GAGCQSGGCDGVFAEAIATNSTLLAE
1
186
1K7U
1
186
P10969
A
1
1
186
1
186
1K7U
1
186
P10969
B
1
1
186
2
2
2
2
2
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
CYS
17
A
CYS
17
A
CYS
18
A
CYS
18
A
CYS
24
A
CYS
24
A
GLY
25
A
GLY
25
A
CYS
60
A
CYS
60
A
CYS
61
A
CYS
61
A
CYS
67
A
CYS
67
A
GLY
68
A
GLY
68
A
CYS
103
A
CYS
103
A
CYS
104
A
CYS
104
A
CYS
110
A
CYS
110
A
GLY
111
A
GLY
111
A
CYS
146
A
CYS
146
A
CYS
147
A
CYS
147
A
CYS
153
A
CYS
153
A
GLY
154
A
GLY
154
B
CYS
17
B
CYS
17
B
CYS
18
B
CYS
18
B
CYS
24
B
CYS
24
B
GLY
25
B
GLY
25
B
CYS
60
B
CYS
60
B
CYS
61
B
CYS
61
B
CYS
67
B
CYS
67
B
GLY
68
B
GLY
68
B
ILE
87
B
ILE
87
B
LYS
88
B
LYS
88
B
TYR
109
B
TYR
109
B
GLY
111
B
GLY
111
B
CYS
103
B
CYS
103
B
CYS
104
B
CYS
104
B
CYS
146
B
CYS
146
B
CYS
147
B
CYS
147
B
CYS
153
B
CYS
153
B
GLY
154
B
GLY
154
4
P 1 21 1