0.006180
0.003568
0.000000
0.000000
0.007137
0.000000
0.000000
0.000000
0.009756
0.00000
0.00000
0.00000
Stillman, T.J.
Migueis, A.M.B.
Wang, X.G.
Baker, P.J.
Britton, K.L.
Engel, P.C.
Rice, D.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
161.800
161.800
102.500
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
285
875
885
10.1006/jmbi.1998.2335
9878450
Insights into the mechanism of domain closure and substrate specificity of glutamate dehydrogenase from Clostridium symbiosum.
1999
US
Biochemistry
BICHAW
0033
0006-2960
36
16109
Determinants of Substrate Specificity in the Superfamily of Amino Acid Dehydrogenases
1997
UK
Structure
STRUE6
2005
0969-2126
3
1147
The Structure of Pyrococcus Furiosus Glutamate Dehydrogenase Reveals a Key Role for Ion-Pair Networks in Maintaining Enzyme Stability at Extreme Temperatures
1995
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
234
1131
Conformational Flexibility in Glutamate Dehydrogenase. Role of Water in Substrate Recognition and Catalysis
1993
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
232
1012
Erratum. Structural Consequences of Sequence Patterns in the Fingerprint Region of the Nucleotide Binding Fold. Implications for Nucleotide Specificity
1993
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
228
662
Structural Consequences of Sequence Patterns in the Fingerprint Region of the Nucleotide Binding Fold. Implications for Nucleotide Specificity
1992
US
Proteins
PSFGEY
0867
0887-3585
12
75
Subunit Assembly and Active Site Location in the Structure of Glutamate Dehydrogenase
1992
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
209
851
Structural Relationship between the Hexameric and Tetrameric Family of Glutamate Dehydrogenases
1992
10.2210/pdb1k89/pdb
pdb_00001k89
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
IMAGE PLATE
1995-11-23
MARRESEARCH
M
x-ray
1
0.92
1.0
PX9.5
SRS
0.92
SYNCHROTRON
SRS BEAMLINE PX9.5
49199.625
GLUTAMATE DEHYDROGENASE
1.4.1.2
K89L
1
man
polymer
18.015
water
238
nat
water
no
no
SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQ
FNGAIGPYLGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDID
VPAGDLGVGARELGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN
VAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPC
ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDS
KLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGIAW
SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQ
FNGAIGPYLGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDID
VPAGDLGVGARELGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN
VAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPC
ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDS
KLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGIAW
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Clostridium
Escherichia
sample
GDH
1512
Clostridium symbiosum
GDH
562
Escherichia coli
Q100
M13MP19
BACTERIOPHAGE
PTAC85-PTAC44
1
2.6
53.11
7.0
pH 7.0
database_2
pdbx_database_status
software
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Database references
Other
Refinement description
Data collection
Refinement description
1
0
1999-01-27
1
1
2008-03-24
1
2
2011-07-13
1
3
2021-11-03
1
4
2024-02-07
1
5
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_software.name
_struct_ref_seq_dif.details
Y
BNL
1998-06-05
REL
HOH
water
CLOSTRIDIUM SYMBIOSUM GLUTAMATE DEHYDROGENASE (WILD TYPE) CRYSTALLISED WITH SODIUM GLUTAMATE IN SPACE GROUP R32. ALL WATERS AND THE BOUND GLUTAMATE SUBSTRATE REMOVED.
Other
experimental model
HOH
1
2
HOH
HOH
450
A
HOH
2
2
HOH
HOH
451
A
HOH
3
2
HOH
HOH
452
A
HOH
4
2
HOH
HOH
453
A
HOH
5
2
HOH
HOH
454
A
HOH
6
2
HOH
HOH
455
A
HOH
7
2
HOH
HOH
456
A
HOH
8
2
HOH
HOH
457
A
HOH
9
2
HOH
HOH
458
A
HOH
10
2
HOH
HOH
459
A
HOH
11
2
HOH
HOH
460
A
HOH
12
2
HOH
HOH
461
A
HOH
13
2
HOH
HOH
462
A
HOH
14
2
HOH
HOH
463
A
HOH
15
2
HOH
HOH
464
A
HOH
16
2
HOH
HOH
465
A
HOH
17
2
HOH
HOH
466
A
HOH
18
2
HOH
HOH
467
A
HOH
19
2
HOH
HOH
468
A
HOH
20
2
HOH
HOH
469
A
HOH
21
2
HOH
HOH
470
A
HOH
22
2
HOH
HOH
471
A
HOH
23
2
HOH
HOH
472
A
HOH
24
2
HOH
HOH
473
A
HOH
25
2
HOH
HOH
474
A
HOH
26
2
HOH
HOH
475
A
HOH
27
2
HOH
HOH
476
A
HOH
28
2
HOH
HOH
477
A
HOH
29
2
HOH
HOH
478
A
HOH
30
2
HOH
HOH
479
A
HOH
31
2
HOH
HOH
480
A
HOH
32
2
HOH
HOH
481
A
HOH
33
2
HOH
HOH
482
A
HOH
34
2
HOH
HOH
483
A
HOH
35
2
HOH
HOH
484
A
HOH
36
2
HOH
HOH
485
A
HOH
37
2
HOH
HOH
486
A
HOH
38
2
HOH
HOH
487
A
HOH
39
2
HOH
HOH
488
A
HOH
40
2
HOH
HOH
489
A
HOH
41
2
HOH
HOH
490
A
HOH
42
2
HOH
HOH
491
A
HOH
43
2
HOH
HOH
492
A
HOH
44
2
HOH
HOH
493
A
HOH
45
2
HOH
HOH
494
A
HOH
46
2
HOH
HOH
495
A
HOH
47
2
HOH
HOH
496
A
HOH
48
2
HOH
HOH
497
A
HOH
49
2
HOH
HOH
498
A
HOH
50
2
HOH
HOH
499
A
HOH
51
2
HOH
HOH
500
A
HOH
52
2
HOH
HOH
501
A
HOH
53
2
HOH
HOH
502
A
HOH
54
2
HOH
HOH
503
A
HOH
55
2
HOH
HOH
504
A
HOH
56
2
HOH
HOH
505
A
HOH
57
2
HOH
HOH
506
A
HOH
58
2
HOH
HOH
507
A
HOH
59
2
HOH
HOH
508
A
HOH
60
2
HOH
HOH
509
A
HOH
61
2
HOH
HOH
510
A
HOH
62
2
HOH
HOH
511
A
HOH
63
2
HOH
HOH
512
A
HOH
64
2
HOH
HOH
513
A
HOH
65
2
HOH
HOH
514
A
HOH
66
2
HOH
HOH
515
A
HOH
67
2
HOH
HOH
516
A
HOH
68
2
HOH
HOH
517
A
HOH
69
2
HOH
HOH
518
A
HOH
70
2
HOH
HOH
519
A
HOH
71
2
HOH
HOH
520
A
HOH
72
2
HOH
HOH
521
A
HOH
73
2
HOH
HOH
522
A
HOH
74
2
HOH
HOH
523
A
HOH
75
2
HOH
HOH
524
A
HOH
76
2
HOH
HOH
525
A
HOH
77
2
HOH
HOH
526
A
HOH
78
2
HOH
HOH
527
A
HOH
79
2
HOH
HOH
528
A
HOH
80
2
HOH
HOH
529
A
HOH
81
2
HOH
HOH
530
A
HOH
82
2
HOH
HOH
531
A
HOH
83
2
HOH
HOH
532
A
HOH
84
2
HOH
HOH
533
A
HOH
85
2
HOH
HOH
534
A
HOH
86
2
HOH
HOH
535
A
HOH
87
2
HOH
HOH
536
A
HOH
88
2
HOH
HOH
537
A
HOH
89
2
HOH
HOH
538
A
HOH
90
2
HOH
HOH
539
A
HOH
91
2
HOH
HOH
540
A
HOH
92
2
HOH
HOH
541
A
HOH
93
2
HOH
HOH
542
A
HOH
94
2
HOH
HOH
543
A
HOH
95
2
HOH
HOH
544
A
HOH
96
2
HOH
HOH
545
A
HOH
97
2
HOH
HOH
546
A
HOH
98
2
HOH
HOH
547
A
HOH
99
2
HOH
HOH
548
A
HOH
100
2
HOH
HOH
549
A
HOH
101
2
HOH
HOH
550
A
HOH
102
2
HOH
HOH
551
A
HOH
103
2
HOH
HOH
552
A
HOH
104
2
HOH
HOH
553
A
HOH
105
2
HOH
HOH
554
A
HOH
106
2
HOH
HOH
555
A
HOH
107
2
HOH
HOH
556
A
HOH
108
2
HOH
HOH
557
A
HOH
109
2
HOH
HOH
558
A
HOH
110
2
HOH
HOH
559
A
HOH
111
2
HOH
HOH
560
A
HOH
112
2
HOH
HOH
561
A
HOH
113
2
HOH
HOH
562
A
HOH
114
2
HOH
HOH
563
A
HOH
115
2
HOH
HOH
564
A
HOH
116
2
HOH
HOH
565
A
HOH
117
2
HOH
HOH
566
A
HOH
118
2
HOH
HOH
567
A
HOH
119
2
HOH
HOH
568
A
HOH
120
2
HOH
HOH
569
A
HOH
121
2
HOH
HOH
570
A
HOH
122
2
HOH
HOH
571
A
HOH
123
2
HOH
HOH
572
A
HOH
124
2
HOH
HOH
573
A
HOH
125
2
HOH
HOH
574
A
HOH
126
2
HOH
HOH
575
A
HOH
127
2
HOH
HOH
576
A
HOH
128
2
HOH
HOH
577
A
HOH
129
2
HOH
HOH
578
A
HOH
130
2
HOH
HOH
579
A
HOH
131
2
HOH
HOH
580
A
HOH
132
2
HOH
HOH
581
A
HOH
133
2
HOH
HOH
582
A
HOH
134
2
HOH
HOH
583
A
HOH
135
2
HOH
HOH
584
A
HOH
136
2
HOH
HOH
585
A
HOH
137
2
HOH
HOH
586
A
HOH
138
2
HOH
HOH
587
A
HOH
139
2
HOH
HOH
588
A
HOH
140
2
HOH
HOH
589
A
HOH
141
2
HOH
HOH
590
A
HOH
142
2
HOH
HOH
591
A
HOH
143
2
HOH
HOH
592
A
HOH
144
2
HOH
HOH
593
A
HOH
145
2
HOH
HOH
594
A
HOH
146
2
HOH
HOH
595
A
HOH
147
2
HOH
HOH
596
A
HOH
148
2
HOH
HOH
597
A
HOH
149
2
HOH
HOH
598
A
HOH
150
2
HOH
HOH
599
A
HOH
151
2
HOH
HOH
600
A
HOH
152
2
HOH
HOH
601
A
HOH
153
2
HOH
HOH
602
A
HOH
154
2
HOH
HOH
603
A
HOH
156
2
HOH
HOH
604
A
HOH
157
2
HOH
HOH
605
A
HOH
158
2
HOH
HOH
606
A
HOH
159
2
HOH
HOH
607
A
HOH
160
2
HOH
HOH
608
A
HOH
161
2
HOH
HOH
609
A
HOH
162
2
HOH
HOH
610
A
HOH
163
2
HOH
HOH
611
A
HOH
164
2
HOH
HOH
612
A
HOH
165
2
HOH
HOH
613
A
HOH
166
2
HOH
HOH
614
A
HOH
167
2
HOH
HOH
615
A
HOH
168
2
HOH
HOH
616
A
HOH
169
2
HOH
HOH
617
A
HOH
170
2
HOH
HOH
618
A
HOH
171
2
HOH
HOH
619
A
HOH
173
2
HOH
HOH
620
A
HOH
174
2
HOH
HOH
621
A
HOH
176
2
HOH
HOH
622
A
HOH
178
2
HOH
HOH
623
A
HOH
179
2
HOH
HOH
624
A
HOH
180
2
HOH
HOH
625
A
HOH
181
2
HOH
HOH
626
A
HOH
182
2
HOH
HOH
627
A
HOH
183
2
HOH
HOH
628
A
HOH
184
2
HOH
HOH
629
A
HOH
185
2
HOH
HOH
630
A
HOH
186
2
HOH
HOH
631
A
HOH
187
2
HOH
HOH
632
A
HOH
188
2
HOH
HOH
633
A
HOH
189
2
HOH
HOH
634
A
HOH
191
2
HOH
HOH
635
A
HOH
192
2
HOH
HOH
636
A
HOH
193
2
HOH
HOH
637
A
HOH
194
2
HOH
HOH
638
A
HOH
195
2
HOH
HOH
639
A
HOH
196
2
HOH
HOH
640
A
HOH
197
2
HOH
HOH
641
A
HOH
198
2
HOH
HOH
642
A
HOH
199
2
HOH
HOH
643
A
HOH
200
2
HOH
HOH
644
A
HOH
201
2
HOH
HOH
645
A
HOH
202
2
HOH
HOH
646
A
HOH
203
2
HOH
HOH
647
A
HOH
204
2
HOH
HOH
648
A
HOH
205
2
HOH
HOH
649
A
HOH
206
2
HOH
HOH
650
A
HOH
207
2
HOH
HOH
651
A
HOH
208
2
HOH
HOH
652
A
HOH
209
2
HOH
HOH
653
A
HOH
210
2
HOH
HOH
654
A
HOH
211
2
HOH
HOH
655
A
HOH
212
2
HOH
HOH
656
A
HOH
213
2
HOH
HOH
657
A
HOH
214
2
HOH
HOH
658
A
HOH
215
2
HOH
HOH
659
A
HOH
216
2
HOH
HOH
660
A
HOH
217
2
HOH
HOH
661
A
HOH
218
2
HOH
HOH
662
A
HOH
219
2
HOH
HOH
663
A
HOH
220
2
HOH
HOH
664
A
HOH
221
2
HOH
HOH
665
A
HOH
222
2
HOH
HOH
666
A
HOH
223
2
HOH
HOH
667
A
HOH
224
2
HOH
HOH
668
A
HOH
225
2
HOH
HOH
669
A
HOH
226
2
HOH
HOH
670
A
HOH
227
2
HOH
HOH
671
A
HOH
228
2
HOH
HOH
672
A
HOH
229
2
HOH
HOH
673
A
HOH
230
2
HOH
HOH
674
A
HOH
231
2
HOH
HOH
675
A
HOH
232
2
HOH
HOH
676
A
HOH
233
2
HOH
HOH
677
A
HOH
234
2
HOH
HOH
678
A
HOH
235
2
HOH
HOH
679
A
HOH
236
2
HOH
HOH
680
A
HOH
237
2
HOH
HOH
681
A
HOH
238
2
HOH
HOH
682
A
HOH
239
2
HOH
HOH
683
A
HOH
240
2
HOH
HOH
684
A
HOH
241
2
HOH
HOH
685
A
HOH
242
2
HOH
HOH
686
A
HOH
243
2
HOH
HOH
687
A
SER
1
n
1
SER
1
A
LYS
2
n
2
LYS
2
A
TYR
3
n
3
TYR
3
A
VAL
4
n
4
VAL
4
A
ASP
5
n
5
ASP
5
A
ARG
6
n
6
ARG
6
A
VAL
7
n
7
VAL
7
A
ILE
8
n
8
ILE
8
A
ALA
9
n
9
ALA
9
A
GLU
10
n
10
GLU
10
A
VAL
11
n
11
VAL
11
A
GLU
12
n
12
GLU
12
A
LYS
13
n
13
LYS
13
A
LYS
14
n
14
LYS
14
A
TYR
15
n
15
TYR
15
A
ALA
16
n
16
ALA
16
A
ASP
17
n
17
ASP
17
A
GLU
18
n
18
GLU
18
A
PRO
19
n
19
PRO
19
A
GLU
20
n
20
GLU
20
A
PHE
21
n
21
PHE
21
A
VAL
22
n
22
VAL
22
A
GLN
23
n
23
GLN
23
A
THR
24
n
24
THR
24
A
VAL
25
n
25
VAL
25
A
GLU
26
n
26
GLU
26
A
GLU
27
n
27
GLU
27
A
VAL
28
n
28
VAL
28
A
LEU
29
n
29
LEU
29
A
SER
30
n
30
SER
30
A
SER
31
n
31
SER
31
A
LEU
32
n
32
LEU
32
A
GLY
33
n
33
GLY
33
A
PRO
34
n
34
PRO
34
A
VAL
35
n
35
VAL
35
A
VAL
36
n
36
VAL
36
A
ASP
37
n
37
ASP
37
A
ALA
38
n
38
ALA
38
A
HIS
39
n
39
HIS
39
A
PRO
40
n
40
PRO
40
A
GLU
41
n
41
GLU
41
A
TYR
42
n
42
TYR
42
A
GLU
43
n
43
GLU
43
A
GLU
44
n
44
GLU
44
A
VAL
45
n
45
VAL
45
A
ALA
46
n
46
ALA
46
A
LEU
47
n
47
LEU
47
A
LEU
48
n
48
LEU
48
A
GLU
49
n
49
GLU
49
A
ARG
50
n
50
ARG
50
A
MET
51
n
51
MET
51
A
VAL
52
n
52
VAL
52
A
ILE
53
n
53
ILE
53
A
PRO
54
n
54
PRO
54
A
GLU
55
n
55
GLU
55
A
ARG
56
n
56
ARG
56
A
VAL
57
n
57
VAL
57
A
ILE
58
n
58
ILE
58
A
GLU
59
n
59
GLU
59
A
PHE
60
n
60
PHE
60
A
ARG
61
n
61
ARG
61
A
VAL
62
n
62
VAL
62
A
PRO
63
n
63
PRO
63
A
TRP
64
n
64
TRP
64
A
GLU
65
n
65
GLU
65
A
ASP
66
n
66
ASP
66
A
ASP
67
n
67
ASP
67
A
ASN
68
n
68
ASN
68
A
GLY
69
n
69
GLY
69
A
LYS
70
n
70
LYS
70
A
VAL
71
n
71
VAL
71
A
HIS
72
n
72
HIS
72
A
VAL
73
n
73
VAL
73
A
ASN
74
n
74
ASN
74
A
THR
75
n
75
THR
75
A
GLY
76
n
76
GLY
76
A
TYR
77
n
77
TYR
77
A
ARG
78
n
78
ARG
78
A
VAL
79
n
79
VAL
79
A
GLN
80
n
80
GLN
80
A
PHE
81
n
81
PHE
81
A
ASN
82
n
82
ASN
82
A
GLY
83
n
83
GLY
83
A
ALA
84
n
84
ALA
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
PRO
87
n
87
PRO
87
A
TYR
88
n
88
TYR
88
A
LEU
89
n
89
LEU
89
A
GLY
90
n
90
GLY
90
A
GLY
91
n
91
GLY
91
A
LEU
92
n
92
LEU
92
A
ARG
93
n
93
ARG
93
A
PHE
94
n
94
PHE
94
A
ALA
95
n
95
ALA
95
A
PRO
96
n
96
PRO
96
A
SER
97
n
97
SER
97
A
VAL
98
n
98
VAL
98
A
ASN
99
n
99
ASN
99
A
LEU
100
n
100
LEU
100
A
SER
101
n
101
SER
101
A
ILE
102
n
102
ILE
102
A
MET
103
n
103
MET
103
A
LYS
104
n
104
LYS
104
A
PHE
105
n
105
PHE
105
A
LEU
106
n
106
LEU
106
A
GLY
107
n
107
GLY
107
A
PHE
108
n
108
PHE
108
A
GLU
109
n
109
GLU
109
A
GLN
110
n
110
GLN
110
A
ALA
111
n
111
ALA
111
A
PHE
112
n
112
PHE
112
A
LYS
113
n
113
LYS
113
A
ASP
114
n
114
ASP
114
A
SER
115
n
115
SER
115
A
LEU
116
n
116
LEU
116
A
THR
117
n
117
THR
117
A
THR
118
n
118
THR
118
A
LEU
119
n
119
LEU
119
A
PRO
120
n
120
PRO
120
A
MET
121
n
121
MET
121
A
GLY
122
n
122
GLY
122
A
GLY
123
n
123
GLY
123
A
ALA
124
n
124
ALA
124
A
LYS
125
n
125
LYS
125
A
GLY
126
n
126
GLY
126
A
GLY
127
n
127
GLY
127
A
SER
128
n
128
SER
128
A
ASP
129
n
129
ASP
129
A
PHE
130
n
130
PHE
130
A
ASP
131
n
131
ASP
131
A
PRO
132
n
132
PRO
132
A
ASN
133
n
133
ASN
133
A
GLY
134
n
134
GLY
134
A
LYS
135
n
135
LYS
135
A
SER
136
n
136
SER
136
A
ASP
137
n
137
ASP
137
A
ARG
138
n
138
ARG
138
A
GLU
139
n
139
GLU
139
A
VAL
140
n
140
VAL
140
A
MET
141
n
141
MET
141
A
ARG
142
n
142
ARG
142
A
PHE
143
n
143
PHE
143
A
CYS
144
n
144
CYS
144
A
GLN
145
n
145
GLN
145
A
ALA
146
n
146
ALA
146
A
PHE
147
n
147
PHE
147
A
MET
148
n
148
MET
148
A
THR
149
n
149
THR
149
A
GLU
150
n
150
GLU
150
A
LEU
151
n
151
LEU
151
A
TYR
152
n
152
TYR
152
A
ARG
153
n
153
ARG
153
A
HIS
154
n
154
HIS
154
A
ILE
155
n
155
ILE
155
A
GLY
156
n
156
GLY
156
A
PRO
157
n
157
PRO
157
A
ASP
158
n
158
ASP
158
A
ILE
159
n
159
ILE
159
A
ASP
160
n
160
ASP
160
A
VAL
161
n
161
VAL
161
A
PRO
162
n
162
PRO
162
A
ALA
163
n
163
ALA
163
A
GLY
164
n
164
GLY
164
A
ASP
165
n
165
ASP
165
A
LEU
166
n
166
LEU
166
A
GLY
167
n
167
GLY
167
A
VAL
168
n
168
VAL
168
A
GLY
169
n
169
GLY
169
A
ALA
170
n
170
ALA
170
A
ARG
171
n
171
ARG
171
A
GLU
172
n
172
GLU
172
A
LEU
173
n
173
LEU
173
A
GLY
174
n
174
GLY
174
A
TYR
175
n
175
TYR
175
A
MET
176
n
176
MET
176
A
TYR
177
n
177
TYR
177
A
GLY
178
n
178
GLY
178
A
GLN
179
n
179
GLN
179
A
TYR
180
n
180
TYR
180
A
ARG
181
n
181
ARG
181
A
LYS
182
n
182
LYS
182
A
ILE
183
n
183
ILE
183
A
VAL
184
n
184
VAL
184
A
GLY
185
n
185
GLY
185
A
GLY
186
n
186
GLY
186
A
PHE
187
n
187
PHE
187
A
TYR
188
n
188
TYR
188
A
ASN
189
n
189
ASN
189
A
GLY
190
n
190
GLY
190
A
VAL
191
n
191
VAL
191
A
LEU
192
n
192
LEU
192
A
THR
193
n
193
THR
193
A
GLY
194
n
194
GLY
194
A
LYS
195
n
195
LYS
195
A
ALA
196
n
196
ALA
196
A
ARG
197
n
197
ARG
197
A
SER
198
n
198
SER
198
A
PHE
199
n
199
PHE
199
A
GLY
200
n
200
GLY
200
A
GLY
201
n
201
GLY
201
A
SER
202
n
202
SER
202
A
LEU
203
n
203
LEU
203
A
VAL
204
n
204
VAL
204
A
ARG
205
n
205
ARG
205
A
PRO
206
n
206
PRO
206
A
GLU
207
n
207
GLU
207
A
ALA
208
n
208
ALA
208
A
THR
209
n
209
THR
209
A
GLY
210
n
210
GLY
210
A
TYR
211
n
211
TYR
211
A
GLY
212
n
212
GLY
212
A
SER
213
n
213
SER
213
A
VAL
214
n
214
VAL
214
A
TYR
215
n
215
TYR
215
A
TYR
216
n
216
TYR
216
A
VAL
217
n
217
VAL
217
A
GLU
218
n
218
GLU
218
A
ALA
219
n
219
ALA
219
A
VAL
220
n
220
VAL
220
A
MET
221
n
221
MET
221
A
LYS
222
n
222
LYS
222
A
HIS
223
n
223
HIS
223
A
GLU
224
n
224
GLU
224
A
ASN
225
n
225
ASN
225
A
ASP
226
n
226
ASP
226
A
THR
227
n
227
THR
227
A
LEU
228
n
228
LEU
228
A
VAL
229
n
229
VAL
229
A
GLY
230
n
230
GLY
230
A
LYS
231
n
231
LYS
231
A
THR
232
n
232
THR
232
A
VAL
233
n
233
VAL
233
A
ALA
234
n
234
ALA
234
A
LEU
235
n
235
LEU
235
A
ALA
236
n
236
ALA
236
A
GLY
237
n
237
GLY
237
A
PHE
238
n
238
PHE
238
A
GLY
239
n
239
GLY
239
A
ASN
240
n
240
ASN
240
A
VAL
241
n
241
VAL
241
A
ALA
242
n
242
ALA
242
A
TRP
243
n
243
TRP
243
A
GLY
244
n
244
GLY
244
A
ALA
245
n
245
ALA
245
A
ALA
246
n
246
ALA
246
A
LYS
247
n
247
LYS
247
A
LYS
248
n
248
LYS
248
A
LEU
249
n
249
LEU
249
A
ALA
250
n
250
ALA
250
A
GLU
251
n
251
GLU
251
A
LEU
252
n
252
LEU
252
A
GLY
253
n
253
GLY
253
A
ALA
254
n
254
ALA
254
A
LYS
255
n
255
LYS
255
A
ALA
256
n
256
ALA
256
A
VAL
257
n
257
VAL
257
A
THR
258
n
258
THR
258
A
LEU
259
n
259
LEU
259
A
SER
260
n
260
SER
260
A
GLY
261
n
261
GLY
261
A
PRO
262
n
262
PRO
262
A
ASP
263
n
263
ASP
263
A
GLY
264
n
264
GLY
264
A
TYR
265
n
265
TYR
265
A
ILE
266
n
266
ILE
266
A
TYR
267
n
267
TYR
267
A
ASP
268
n
268
ASP
268
A
PRO
269
n
269
PRO
269
A
GLU
270
n
270
GLU
270
A
GLY
271
n
271
GLY
271
A
ILE
272
n
272
ILE
272
A
THR
273
n
273
THR
273
A
THR
274
n
274
THR
274
A
GLU
275
n
275
GLU
275
A
GLU
276
n
276
GLU
276
A
LYS
277
n
277
LYS
277
A
ILE
278
n
278
ILE
278
A
ASN
279
n
279
ASN
279
A
TYR
280
n
280
TYR
280
A
MET
281
n
281
MET
281
A
LEU
282
n
282
LEU
282
A
GLU
283
n
283
GLU
283
A
MET
284
n
284
MET
284
A
ARG
285
n
285
ARG
285
A
ALA
286
n
286
ALA
286
A
SER
287
n
287
SER
287
A
GLY
288
n
288
GLY
288
A
ARG
289
n
289
ARG
289
A
ASN
290
n
290
ASN
290
A
LYS
291
n
291
LYS
291
A
VAL
292
n
292
VAL
292
A
GLN
293
n
293
GLN
293
A
ASP
294
n
294
ASP
294
A
TYR
295
n
295
TYR
295
A
ALA
296
n
296
ALA
296
A
ASP
297
n
297
ASP
297
A
LYS
298
n
298
LYS
298
A
PHE
299
n
299
PHE
299
A
GLY
300
n
300
GLY
300
A
VAL
301
n
301
VAL
301
A
GLN
302
n
302
GLN
302
A
PHE
303
n
303
PHE
303
A
PHE
304
n
304
PHE
304
A
PRO
305
n
305
PRO
305
A
GLY
306
n
306
GLY
306
A
GLU
307
n
307
GLU
307
A
LYS
308
n
308
LYS
308
A
PRO
309
n
309
PRO
309
A
TRP
310
n
310
TRP
310
A
GLY
311
n
311
GLY
311
A
GLN
312
n
312
GLN
312
A
LYS
313
n
313
LYS
313
A
VAL
314
n
314
VAL
314
A
ASP
315
n
315
ASP
315
A
ILE
316
n
316
ILE
316
A
ILE
317
n
317
ILE
317
A
MET
318
n
318
MET
318
A
PRO
319
n
319
PRO
319
A
CYS
320
n
320
CYS
320
A
ALA
321
n
321
ALA
321
A
THR
322
n
322
THR
322
A
GLN
323
n
323
GLN
323
A
ASN
324
n
324
ASN
324
A
ASP
325
n
325
ASP
325
A
VAL
326
n
326
VAL
326
A
ASP
327
n
327
ASP
327
A
LEU
328
n
328
LEU
328
A
GLU
329
n
329
GLU
329
A
GLN
330
n
330
GLN
330
A
ALA
331
n
331
ALA
331
A
LYS
332
n
332
LYS
332
A
LYS
333
n
333
LYS
333
A
ILE
334
n
334
ILE
334
A
VAL
335
n
335
VAL
335
A
ALA
336
n
336
ALA
336
A
ASN
337
n
337
ASN
337
A
ASN
338
n
338
ASN
338
A
VAL
339
n
339
VAL
339
A
LYS
340
n
340
LYS
340
A
TYR
341
n
341
TYR
341
A
TYR
342
n
342
TYR
342
A
ILE
343
n
343
ILE
343
A
GLU
344
n
344
GLU
344
A
VAL
345
n
345
VAL
345
A
ALA
346
n
346
ALA
346
A
ASN
347
n
347
ASN
347
A
MET
348
n
348
MET
348
A
PRO
349
n
349
PRO
349
A
THR
350
n
350
THR
350
A
THR
351
n
351
THR
351
A
ASN
352
n
352
ASN
352
A
GLU
353
n
353
GLU
353
A
ALA
354
n
354
ALA
354
A
LEU
355
n
355
LEU
355
A
ARG
356
n
356
ARG
356
A
PHE
357
n
357
PHE
357
A
LEU
358
n
358
LEU
358
A
MET
359
n
359
MET
359
A
GLN
360
n
360
GLN
360
A
GLN
361
n
361
GLN
361
A
PRO
362
n
362
PRO
362
A
ASN
363
n
363
ASN
363
A
MET
364
n
364
MET
364
A
VAL
365
n
365
VAL
365
A
VAL
366
n
366
VAL
366
A
ALA
367
n
367
ALA
367
A
PRO
368
n
368
PRO
368
A
SER
369
n
369
SER
369
A
LYS
370
n
370
LYS
370
A
ALA
371
n
371
ALA
371
A
VAL
372
n
372
VAL
372
A
ASN
373
n
373
ASN
373
A
ALA
374
n
374
ALA
374
A
GLY
375
n
375
GLY
375
A
GLY
376
n
376
GLY
376
A
VAL
377
n
377
VAL
377
A
LEU
378
n
378
LEU
378
A
VAL
379
n
379
VAL
379
A
SER
380
n
380
SER
380
A
GLY
381
n
381
GLY
381
A
PHE
382
n
382
PHE
382
A
GLU
383
n
383
GLU
383
A
MET
384
n
384
MET
384
A
SER
385
n
385
SER
385
A
GLN
386
n
386
GLN
386
A
ASN
387
n
387
ASN
387
A
SER
388
n
388
SER
388
A
GLU
389
n
389
GLU
389
A
ARG
390
n
390
ARG
390
A
LEU
391
n
391
LEU
391
A
SER
392
n
392
SER
392
A
TRP
393
n
393
TRP
393
A
THR
394
n
394
THR
394
A
ALA
395
n
395
ALA
395
A
GLU
396
n
396
GLU
396
A
GLU
397
n
397
GLU
397
A
VAL
398
n
398
VAL
398
A
ASP
399
n
399
ASP
399
A
SER
400
n
400
SER
400
A
LYS
401
n
401
LYS
401
A
LEU
402
n
402
LEU
402
A
HIS
403
n
403
HIS
403
A
GLN
404
n
404
GLN
404
A
VAL
405
n
405
VAL
405
A
MET
406
n
406
MET
406
A
THR
407
n
407
THR
407
A
ASP
408
n
408
ASP
408
A
ILE
409
n
409
ILE
409
A
HIS
410
n
410
HIS
410
A
ASP
411
n
411
ASP
411
A
GLY
412
n
412
GLY
412
A
SER
413
n
413
SER
413
A
ALA
414
n
414
ALA
414
A
ALA
415
n
415
ALA
415
A
ALA
416
n
416
ALA
416
A
ALA
417
n
417
ALA
417
A
GLU
418
n
418
GLU
418
A
ARG
419
n
419
ARG
419
A
TYR
420
n
420
TYR
420
A
GLY
421
n
421
GLY
421
A
LEU
422
n
422
LEU
422
A
GLY
423
n
423
GLY
423
A
TYR
424
n
424
TYR
424
A
ASN
425
n
425
ASN
425
A
LEU
426
n
426
LEU
426
A
VAL
427
n
427
VAL
427
A
ALA
428
n
428
ALA
428
A
GLY
429
n
429
GLY
429
A
ALA
430
n
430
ALA
430
A
ASN
431
n
431
ASN
431
A
ILE
432
n
432
ILE
432
A
VAL
433
n
433
VAL
433
A
GLY
434
n
434
GLY
434
A
PHE
435
n
435
PHE
435
A
GLN
436
n
436
GLN
436
A
LYS
437
n
437
LYS
437
A
ILE
438
n
438
ILE
438
A
ALA
439
n
439
ALA
439
A
ASP
440
n
440
ASP
440
A
ALA
441
n
441
ALA
441
A
MET
442
n
442
MET
442
A
MET
443
n
443
MET
443
A
ALA
444
n
444
ALA
444
A
GLN
445
n
445
GLN
445
A
GLY
446
n
446
GLY
446
A
ILE
447
n
447
ILE
447
A
ALA
448
n
448
ALA
448
A
TRP
449
n
449
TRP
449
A
0.1430000
author_and_software_defined_assembly
PISA,PQS
6
hexameric
23850
-41
85830
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-y,x-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_555
-x+y,-x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_555
x-y,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_555
-x,-x+y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
ARG
56
A
O
ARG
56
A
N
GLN
80
A
N
GLN
80
A
O
TYR
77
A
O
TYR
77
A
N
GLY
127
A
N
GLY
127
A
O
GLY
126
A
O
GLY
126
A
N
ARG
93
A
N
ARG
93
A
O
TYR
88
A
O
TYR
88
A
N
VAL
161
A
N
VAL
161
A
O
ALA
234
A
O
ALA
234
A
N
ILE
316
A
N
ILE
316
A
O
LEU
259
A
O
LEU
259
A
N
ILE
266
A
N
ILE
266
A
O
TYR
265
A
O
TYR
265
A
N
PHE
304
A
N
PHE
304
A
O
TYR
342
A
O
TYR
342
A
N
VAL
365
A
N
VAL
365
1
A
CD1
LEU
173
A
CD1
LEU
173
1
Y
1
A
CD2
LEU
173
A
CD2
LEU
173
1
Y
1
A
A
CA
NH1
GLY
ARG
194
205
1.79
1
A
A
ND2
O
ASN
HOH
352
620
2.13
1
-3.95
0.50
120.30
116.35
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
50
50
50
N
1
6.38
0.90
118.30
124.68
A
A
A
CB
CG
OD1
ASP
ASP
ASP
66
66
66
N
1
3.80
0.50
120.30
124.10
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
142
142
142
N
1
-4.90
0.50
120.30
115.40
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
142
142
142
N
1
A
A
CD
OE1
GLU
GLU
12
12
0.082
0.011
1.252
1.334
N
1
A
A
O
O
HOH
HOH
600
600
0.78
1_555
6_556
1
A
A
O
O
HOH
HOH
519
519
0.85
1_555
6_555
1
A
A
O
O
HOH
HOH
591
591
1.95
1_555
6_555
1
A
THR
118
79.47
-0.46
1
A
ASP
165
-165.82
-160.25
1
A
PHE
187
-87.36
-73.04
1
A
PHE
238
-144.95
22.21
1
A
SER
287
-22.80
-42.65
1
A
ASN
290
72.31
38.79
1
A
ALA
321
-131.07
-72.44
1
A
ASN
324
37.90
40.90
1
A
MET
348
39.49
59.12
1
A
ALA
448
-129.47
-66.90
0.1430000
2.05
10.0
27063
27063
83
1
TNT
0.0
MOLECULAR REPLACEMENT
CLOSTRIDIUM SYMBIOSUM GLUTAMATE DEHYDROGENASE (WILD TYPE) CRYSTALLISED WITH SODIUM GLUTAMATE IN SPACE GROUP R32. ALL WATERS AND THE BOUND GLUTAMATE SUBSTRATE REMOVED.
ENGH AND HUBER
MOEWS AND KRETSINGER
282
0.85
2.05
10.0
238
3695
0
0
3457
0.016
3533
4.0
1.639
4761
4.0
17.215
2108
0.0
0
0.015
95
7.0
0.017
517
20.0
0.292
44
0.5
2.05
24.0
1K89
27219
0.0
0.0290000
1
17.6
3.6
84.7
0.1120000
2.05
2.10
6.4
1
2.3
72.7
model building
TFFC
refinement
TNT
5E
data reduction
MOSFLM
data scaling
CCP4
(AGROVATA
data scaling
ROTAVATA
phasing
TFFC
K89L MUTANT OF GLUTAMATE DEHYDROGENASE
1
N
N
2
N
N
A
LYS
2
A
LYS
2
HELX_P
A
LYS
14
A
LYS
14
1
1
13
A
PRO
19
A
PRO
19
HELX_P
A
ASP
37
A
ASP
37
1
2
19
A
PRO
40
A
PRO
40
HELX_P
A
VAL
45
A
VAL
45
1
3
6
A
LEU
47
A
LEU
47
HELX_P
A
MET
51
A
MET
51
1
4
5
A
LEU
100
A
LEU
100
HELX_P
A
THR
117
A
THR
117
1
5
18
A
ASP
137
A
ASP
137
HELX_P
A
HIS
154
A
HIS
154
1
6
18
A
ALA
170
A
ALA
170
HELX_P
A
VAL
184
A
VAL
184
1
7
15
A
ASN
189
A
ASN
189
HELX_P
A
VAL
191
A
VAL
191
5
8
3
A
ARG
197
A
ARG
197
HELX_P
A
PHE
199
A
PHE
199
5
9
3
A
ALA
208
A
ALA
208
HELX_P
A
GLU
224
A
GLU
224
1
10
17
A
ASN
240
A
ASN
240
HELX_P
A
LEU
252
A
LEU
252
1
11
13
A
GLU
275
A
GLU
275
HELX_P
A
SER
287
A
SER
287
1
12
13
A
VAL
292
A
VAL
292
HELX_P
A
PHE
299
A
PHE
299
5
13
8
A
PRO
309
A
PRO
309
HELX_P
A
GLY
311
A
GLY
311
5
14
3
A
LEU
328
A
LEU
328
HELX_P
A
ALA
336
A
ALA
336
1
15
9
A
ASN
352
A
ASN
352
HELX_P
A
GLN
360
A
GLN
360
1
16
9
A
SER
369
A
SER
369
HELX_P
A
VAL
372
A
VAL
372
1
17
4
A
ALA
374
A
ALA
374
HELX_P
A
GLU
389
A
GLU
389
1
18
16
A
ALA
395
A
ALA
395
HELX_P
A
TYR
420
A
TYR
420
1
19
26
A
LEU
426
A
LEU
426
HELX_P
A
GLN
445
A
GLN
445
1
20
20
OXIDOREDUCTASE
OXIDOREDUCTASE
DHE2_CLOSY
UNP
1
1
P24295
SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQ
FNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDID
VPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN
VAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPC
ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDS
KLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGIAW
1
449
1K89
1
449
P24295
A
1
1
449
1
LYS
engineered mutation
LEU
89
1K89
A
P24295
UNP
89
89
1
ILE
conflict
LEU
173
1K89
A
P24295
UNP
173
173
4
2
2
3
2
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
A
ARG
56
A
ARG
56
A
GLU
65
A
GLU
65
A
VAL
71
A
VAL
71
A
ASN
82
A
ASN
82
A
GLY
123
A
GLY
123
A
SER
128
A
SER
128
A
LEU
92
A
LEU
92
A
PHE
94
A
PHE
94
A
TYR
88
A
TYR
88
A
GLY
91
A
GLY
91
A
ASP
160
A
ASP
160
A
ALA
163
A
ALA
163
A
VAL
233
A
VAL
233
A
LEU
235
A
LEU
235
A
ILE
316
A
ILE
316
A
MET
318
A
MET
318
A
THR
258
A
THR
258
A
GLY
261
A
GLY
261
A
GLY
264
A
GLY
264
A
TYR
267
A
TYR
267
A
GLN
302
A
GLN
302
A
PRO
305
A
PRO
305
A
TYR
341
A
TYR
341
A
ILE
343
A
ILE
343
A
VAL
365
A
VAL
365
A
ALA
367
A
ALA
367
155
H 3 2