0.007008 0.000000 0.000000 0.000000 0.007008 0.000000 0.000000 0.000000 0.013004 0.00000 0.00000 0.00000 Fremont, D.H. Crawford, F. Marrack, P. Hendrickson, W. Kappler, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 142.700 142.700 76.900 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Immunity IUNIEH 2048 1074-7613 9 385 393 10.1016/S1074-7613(00)80621-4 9768758 Crystal structure of mouse H2-M. 1998 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 mirrors IMAGE PLATE 1998-04-01 RIGAKU RAXIS IV Yale mirrors SINGLE WAVELENGTH M x-ray 1 1.5 1.0 1.5 ROTATING ANODE RIGAKU 21466.945 MHC class II H2-M alpha chain 1 man polymer 21329.883 MHC class II H2-M beta 2 chain 1 man polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 2 man non-polymer no no ASTPVFWDDPQNHTFRHTLFCQDGIPNIGLSETYDEDELFSFDFSQNTRVPRLPDFAEWAQGQGDASAIAFDKSFCEMLM REVSPKLEGQIPVSRGLPVAEVFTLKPLEFGKPNTLVCFISNLFPPTLTVNWQLHSAPVEGASPTSISAVDGLTFQAFSY LNFTPEPFDLYSCTVTHEIDRYTAIAYWVPQ ASTPVFWDDPQNHTFRHTLFCQDGIPNIGLSETYDEDELFSFDFSQNTRVPRLPDFAEWAQGQGDASAIAFDKSFCEMLM REVSPKLEGQIPVSRGLPVAEVFTLKPLEFGKPNTLVCFISNLFPPTLTVNWQLHSAPVEGASPTSISAVDGLTFQAFSY LNFTPEPFDLYSCTVTHEIDRYTAIAYWVPQ A polypeptide(L) no no GFVAHVESTCVLNDAGTPQDFTYCVSFNKDLLACWDPDVGKIVPCEFGVLSRLAEIISNILNEQESLIHRLQNGLQDCAT HTQPFWDVLTHRTRAPSVRVAQTTPFNTREPVMLACYVWGFYPADVTITWMKNGQLVPSHSNKEKTAQPNGDWTYQTVSY LALTPSYGDVYTCVVQHSGTSEPIRGDWTPG GFVAHVESTCVLNDAGTPQDFTYCVSFNKDLLACWDPDVGKIVPCEFGVLSRLAEIISNILNEQESLIHRLQNGLQDCAT HTQPFWDVLTHRTRAPSVRVAQTTPFNTREPVMLACYVWGFYPADVTITWMKNGQLVPSHSNKEKTAQPNGDWTYQTVSY LALTPSYGDVYTCVVQHSGTSEPIRGDWTPG B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus cabbage looper Trichoplusia sample H2-DM 10090 Mus musculus high-five 7111 Trichoplusia ni baculovirus house mouse Mus cabbage looper Trichoplusia sample H2-DM 10090 Mus musculus high-five 7111 Trichoplusia ni baculovirus 4 4.57 73.09 VAPOR DIFFUSION, HANGING DROP 5.5 0.1 M lithium sulfate, 0.1M MES, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Data collection Derived calculations Structure summary 1 0 2001-12-05 1 1 2008-04-27 1 2 2011-07-13 1 3 2020-07-29 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc RCSB Y RCSB 2001-10-24 REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 1 3 NAG NAG 192 A NAG 2 3 NAG NAG 193 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A n 10 10 A GLN 11 n 11 GLN 11 A ASN 12 n 12 ASN 12 A HIS 13 n 13 HIS 13 A THR 14 n 14 THR 14 A PHE 15 n 15 PHE 15 A ARG 16 n 16 ARG 16 A HIS 17 n 17 HIS 17 A THR 18 n 18 THR 18 A LEU 19 n 19 LEU 19 A PHE 20 n 20 PHE 20 A CYS 21 n 21 CYS 21 A GLN 22 n 22 GLN 22 A ASP 23 n 23 ASP 23 A GLY 24 n 24 GLY 24 A ILE 25 n 25 ILE 25 A PRO 26 n 26 PRO 26 A ASN 27 n 27 ASN 27 A ILE 28 n 28 ILE 28 A GLY 29 n 29 GLY 29 A LEU 30 n 30 LEU 30 A SER 31 n 31 SER 31 A GLU 32 n 32 GLU 32 A THR 33 n 33 THR 33 A TYR 34 n 34 TYR 34 A ASP 35 n 35 ASP 35 A GLU 36 n 36 GLU 36 A ASP 37 n 37 ASP 37 A GLU 38 n 38 GLU 38 A LEU 39 n 39 LEU 39 A PHE 40 n 40 PHE 40 A SER 41 n 41 SER 41 A PHE 42 n 42 PHE 42 A ASP 43 n 43 ASP 43 A PHE 44 n 44 PHE 44 A SER 45 n 45 SER 45 A GLN 46 n 46 GLN 46 A ASN 47 n 47 ASN 47 A THR 48 n 48 THR 48 A ARG 49 n 49 ARG 49 A VAL 50 n 50 VAL 50 A PRO 51 n 51 PRO 51 A ARG 52 n 52 ARG 52 A LEU 53 n 53 LEU 53 A PRO 54 n 54 PRO 54 A ASP 55 n 55 ASP 55 A PHE 56 n 56 PHE 56 A ALA 57 n 57 ALA 57 A GLU 58 n 58 GLU 58 A TRP 59 n 59 TRP 59 A ALA 60 n 60 ALA 60 A GLN 61 n 61 GLN 61 A GLY 62 n 62 GLY 62 A GLN 63 n 63 GLN 63 A GLY 64 n 64 GLY 64 A ASP 65 n 65 ASP 65 A ALA 66 n 66 ALA 66 A SER 67 n 67 SER 67 A ALA 68 n 68 ALA 68 A ILE 69 n 69 ILE 69 A ALA 70 n 70 ALA 70 A PHE 71 n 71 PHE 71 A ASP 72 n 72 ASP 72 A LYS 73 n 73 LYS 73 A SER 74 n 74 SER 74 A PHE 75 n 75 PHE 75 A CYS 76 n 76 CYS 76 A GLU 77 n 77 GLU 77 A MET 78 n 78 MET 78 A LEU 79 n 79 LEU 79 A MET 80 n 80 MET 80 A ARG 81 n 81 ARG 81 A GLU 82 n 82 GLU 82 A VAL 83 n 83 VAL 83 A SER 84 n 84 SER 84 A PRO 85 n 85 PRO 85 A LYS 86 n 86 LYS 86 A LEU 87 n 87 LEU 87 A GLU 88 n 88 GLU 88 A GLY 89 n 89 GLY 89 A GLN 90 n 90 GLN 90 A ILE 91 n 91 ILE 91 A PRO 92 n 92 PRO 92 A VAL 93 n 93 VAL 93 A SER 94 n 94 SER 94 A ARG 95 n 95 ARG 95 A GLY 96 n 96 GLY 96 A LEU 97 n 97 LEU 97 A PRO 98 n 98 PRO 98 A VAL 99 n 99 VAL 99 A ALA 100 n 100 ALA 100 A GLU 101 n 101 GLU 101 A VAL 102 n 102 VAL 102 A PHE 103 n 103 PHE 103 A THR 104 n 104 THR 104 A LEU 105 n 105 LEU 105 A LYS 106 n 106 LYS 106 A PRO 107 n 107 PRO 107 A LEU 108 n 108 LEU 108 A GLU 109 n 109 GLU 109 A PHE 110 n 110 PHE 110 A GLY 111 n 111 GLY 111 A LYS 112 n 112 LYS 112 A PRO 113 n 113 PRO 113 A ASN 114 n 114 ASN 114 A THR 115 n 115 THR 115 A LEU 116 n 116 LEU 116 A VAL 117 n 117 VAL 117 A CYS 118 n 118 CYS 118 A PHE 119 n 119 PHE 119 A ILE 120 n 120 ILE 120 A SER 121 n 121 SER 121 A ASN 122 n 122 ASN 122 A LEU 123 n 123 LEU 123 A PHE 124 n 124 PHE 124 A PRO 125 n 125 PRO 125 A PRO 126 n 126 PRO 126 A THR 127 n 127 THR 127 A LEU 128 n 128 LEU 128 A THR 129 n 129 THR 129 A VAL 130 n 130 VAL 130 A ASN 131 n 131 ASN 131 A TRP 132 n 132 TRP 132 A GLN 133 n 133 GLN 133 A LEU 134 n 134 LEU 134 A HIS 135 n 135 HIS 135 A SER 136 n 136 SER 136 A ALA 137 n 137 ALA 137 A PRO 138 n 138 PRO 138 A VAL 139 n 139 VAL 139 A GLU 140 n 140 GLU 140 A GLY 141 n 141 GLY 141 A ALA 142 n 142 ALA 142 A SER 143 n 143 SER 143 A PRO 144 n 144 PRO 144 A THR 145 n 145 THR 145 A SER 146 n 146 SER 146 A ILE 147 n 147 ILE 147 A SER 148 n 148 SER 148 A ALA 149 n 149 ALA 149 A VAL 150 n 150 VAL 150 A ASP 151 n 151 ASP 151 A GLY 152 n 152 GLY 152 A LEU 153 n 153 LEU 153 A THR 154 n 154 THR 154 A PHE 155 n 155 PHE 155 A GLN 156 n 156 GLN 156 A ALA 157 n 157 ALA 157 A PHE 158 n 158 PHE 158 A SER 159 n 159 SER 159 A TYR 160 n 160 TYR 160 A LEU 161 n 161 LEU 161 A ASN 162 n 162 ASN 162 A PHE 163 n 163 PHE 163 A THR 164 n 164 THR 164 A PRO 165 n 165 PRO 165 A GLU 166 n 166 GLU 166 A PRO 167 n 167 PRO 167 A PHE 168 n 168 PHE 168 A ASP 169 n 169 ASP 169 A LEU 170 n 170 LEU 170 A TYR 171 n 171 TYR 171 A SER 172 n 172 SER 172 A CYS 173 n 173 CYS 173 A THR 174 n 174 THR 174 A VAL 175 n 175 VAL 175 A THR 176 n 176 THR 176 A HIS 177 n 177 HIS 177 A GLU 178 n 178 GLU 178 A ILE 179 n 179 ILE 179 A ASP 180 n 180 ASP 180 A ARG 181 n 181 ARG 181 A TYR 182 n 182 TYR 182 A THR 183 n 183 THR 183 A ALA 184 n 184 ALA 184 A ILE 185 n 185 ILE 185 A ALA 186 n 186 ALA 186 A TYR 187 n 187 TYR 187 A TRP 188 n 188 TRP 188 A VAL 189 n 189 VAL 189 A PRO 190 n 190 PRO 190 A GLN 191 n 191 GLN 191 A GLY 1 n 1 GLY 1 B PHE 2 n 2 PHE 2 B VAL 3 n 3 VAL 3 B ALA 4 n 4 ALA 4 B HIS 5 n 5 HIS 5 B VAL 6 n 6 VAL 6 B GLU 7 n 7 GLU 7 B SER 8 n 8 SER 8 B THR 9 n 9 THR 9 B CYS 10 n 10 CYS 10 B VAL 11 n 11 VAL 11 B LEU 12 n 12 LEU 12 B ASN 13 n 13 ASN 13 B ASP 14 n 14 ASP 14 B ALA 15 n 15 ALA 15 B GLY 16 n 16 GLY 16 B THR 17 n 17 THR 17 B PRO 18 n 18 PRO 18 B GLN 19 n 19 GLN 19 B ASP 20 n 20 ASP 20 B PHE 21 n 21 PHE 21 B THR 22 n 22 THR 22 B TYR 23 n 23 TYR 23 B CYS 24 n 24 CYS 24 B VAL 25 n 25 VAL 25 B SER 26 n 26 SER 26 B PHE 27 n 27 PHE 27 B ASN 28 n 28 ASN 28 B LYS 29 n 29 LYS 29 B ASP 30 n 30 ASP 30 B LEU 31 n 31 LEU 31 B LEU 32 n 32 LEU 32 B ALA 33 n 33 ALA 33 B CYS 34 n 34 CYS 34 B TRP 35 n 35 TRP 35 B ASP 36 n 36 ASP 36 B PRO 37 n 37 PRO 37 B ASP 38 n 38 ASP 38 B VAL 39 n 39 VAL 39 B GLY 40 n 40 GLY 40 B LYS 41 n 41 LYS 41 B ILE 42 n 42 ILE 42 B VAL 43 n 43 VAL 43 B PRO 44 n 44 PRO 44 B CYS 45 n 45 CYS 45 B GLU 46 n 46 GLU 46 B PHE 47 n 47 PHE 47 B GLY 48 n 48 GLY 48 B VAL 49 n 49 VAL 49 B LEU 50 n 50 LEU 50 B SER 51 n 51 SER 51 B ARG 52 n 52 ARG 52 B LEU 53 n 53 LEU 53 B ALA 54 n 54 ALA 54 B GLU 55 n 55 GLU 55 B ILE 56 n 56 ILE 56 B ILE 57 n 57 ILE 57 B SER 58 n 58 SER 58 B ASN 59 n 59 ASN 59 B ILE 60 n 60 ILE 60 B LEU 61 n 61 LEU 61 B ASN 62 n 62 ASN 62 B GLU 63 n 63 GLU 63 B GLN 64 n 64 GLN 64 B GLU 65 n 65 GLU 65 B SER 66 n 66 SER 66 B LEU 67 n 67 LEU 67 B ILE 68 n 68 ILE 68 B HIS 69 n 69 HIS 69 B ARG 70 n 70 ARG 70 B LEU 71 n 71 LEU 71 B GLN 72 n 72 GLN 72 B ASN 73 n 73 ASN 73 B GLY 74 n 74 GLY 74 B LEU 75 n 75 LEU 75 B GLN 76 n 76 GLN 76 B ASP 77 n 77 ASP 77 B CYS 78 n 78 CYS 78 B ALA 79 n 79 ALA 79 B THR 80 n 80 THR 80 B HIS 81 n 81 HIS 81 B THR 82 n 82 THR 82 B GLN 83 n 83 GLN 83 B PRO 84 n 84 PRO 84 B PHE 85 n 85 PHE 85 B TRP 86 n 86 TRP 86 B ASP 87 n 87 ASP 87 B VAL 88 n 88 VAL 88 B LEU 89 n 89 LEU 89 B THR 90 n 90 THR 90 B HIS 91 n 91 HIS 91 B ARG 92 n 92 ARG 92 B THR 93 n 93 THR 93 B ARG 94 n 94 ARG 94 B ALA 95 n 95 ALA 95 B PRO 96 n 96 PRO 96 B SER 97 n 97 SER 97 B VAL 98 n 98 VAL 98 B ARG 99 n 99 ARG 99 B VAL 100 n 100 VAL 100 B ALA 101 n 101 ALA 101 B GLN 102 n 102 GLN 102 B THR 103 n 103 THR 103 B THR 104 n 104 THR 104 B PRO 105 n 105 PRO 105 B PHE 106 n 106 PHE 106 B ASN 107 n 107 ASN 107 B THR 108 n 108 THR 108 B ARG 109 n 109 ARG 109 B GLU 110 n 110 GLU 110 B PRO 111 n 111 PRO 111 B VAL 112 n 112 VAL 112 B MET 113 n 113 MET 113 B LEU 114 n 114 LEU 114 B ALA 115 n 115 ALA 115 B CYS 116 n 116 CYS 116 B TYR 117 n 117 TYR 117 B VAL 118 n 118 VAL 118 B TRP 119 n 119 TRP 119 B GLY 120 n 120 GLY 120 B PHE 121 n 121 PHE 121 B TYR 122 n 122 TYR 122 B PRO 123 n 123 PRO 123 B ALA 124 n 124 ALA 124 B ASP 125 n 125 ASP 125 B VAL 126 n 126 VAL 126 B THR 127 n 127 THR 127 B ILE 128 n 128 ILE 128 B THR 129 n 129 THR 129 B TRP 130 n 130 TRP 130 B MET 131 n 131 MET 131 B LYS 132 n 132 LYS 132 B ASN 133 n 133 ASN 133 B GLY 134 n 134 GLY 134 B GLN 135 n 135 GLN 135 B LEU 136 n 136 LEU 136 B VAL 137 n 137 VAL 137 B PRO 138 n 138 PRO 138 B SER 139 n 139 SER 139 B HIS 140 n 140 HIS 140 B SER 141 n 141 SER 141 B ASN 142 n 142 ASN 142 B LYS 143 n 143 LYS 143 B GLU 144 n 144 GLU 144 B LYS 145 n 145 LYS 145 B THR 146 n 146 THR 146 B ALA 147 n 147 ALA 147 B GLN 148 n 148 GLN 148 B PRO 149 n 149 PRO 149 B ASN 150 n 150 ASN 150 B GLY 151 n 151 GLY 151 B ASP 152 n 152 ASP 152 B TRP 153 n 153 TRP 153 B THR 154 n 154 THR 154 B TYR 155 n 155 TYR 155 B GLN 156 n 156 GLN 156 B THR 157 n 157 THR 157 B VAL 158 n 158 VAL 158 B SER 159 n 159 SER 159 B TYR 160 n 160 TYR 160 B LEU 161 n 161 LEU 161 B ALA 162 n 162 ALA 162 B LEU 163 n 163 LEU 163 B THR 164 n 164 THR 164 B PRO 165 n 165 PRO 165 B SER 166 n 166 SER 166 B TYR 167 n 167 TYR 167 B GLY 168 n 168 GLY 168 B ASP 169 n 169 ASP 169 B VAL 170 n 170 VAL 170 B TYR 171 n 171 TYR 171 B THR 172 n 172 THR 172 B CYS 173 n 173 CYS 173 B VAL 174 n 174 VAL 174 B VAL 175 n 175 VAL 175 B GLN 176 n 176 GLN 176 B HIS 177 n 177 HIS 177 B SER 178 n 178 SER 178 B GLY 179 n 179 GLY 179 B THR 180 n 180 THR 180 B SER 181 n 181 SER 181 B GLU 182 n 182 GLU 182 B PRO 183 n 183 PRO 183 B ILE 184 n 184 ILE 184 B ARG 185 n 185 ARG 185 B GLY 186 n 186 GLY 186 B ASP 187 n 187 ASP 187 B TRP 188 n 188 TRP 188 B THR 189 n 189 THR 189 B PRO 190 n 190 PRO 190 B n 191 191 B author_and_software_defined_assembly PISA 2 dimeric 5700 -21 18140 A ASN 12 GLYCOSYLATION SITE A ASN 12 ASN A ASN 162 GLYCOSYLATION SITE A ASN 162 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O THR 48 A O THR 48 A N ASP 43 A N ASP 43 A O LEU 39 A O LEU 39 A N GLU 32 A N GLU 32 A O GLY 29 A O GLY 29 A N PHE 20 A N PHE 20 A N PHE 15 A N PHE 15 B O CYS 10 B O CYS 10 B N VAL 11 B N VAL 11 B O GLN 19 B O GLN 19 A O THR 48 A O THR 48 A N ASP 43 A N ASP 43 A O LEU 39 A O LEU 39 A N GLU 32 A N GLU 32 A O GLY 29 A O GLY 29 A N PHE 20 A N PHE 20 A N PHE 15 A N PHE 15 B O CYS 10 B O CYS 10 B N GLU 7 B N GLU 7 B O CYS 24 B O CYS 24 B N VAL 25 B N VAL 25 B O ALA 33 B O ALA 33 B N CYS 34 B N CYS 34 B O VAL 43 B O VAL 43 A N VAL 99 A N VAL 99 A O SER 121 A O SER 121 A N LEU 116 A N LEU 116 A O LEU 161 A O LEU 161 A O THR 154 A O THR 154 A N VAL 150 A N VAL 150 A O ALA 137 A O ALA 137 A N LEU 134 A N LEU 134 A N ASN 131 A N ASN 131 A O THR 174 A O THR 174 A N VAL 175 A N VAL 175 A O ALA 184 A O ALA 184 B N ALA 101 B N ALA 101 B O ALA 115 B O ALA 115 B N LEU 114 B N LEU 114 B O LEU 161 B O LEU 161 B O GLN 156 B O GLN 156 B N GLN 148 B N GLN 148 B O GLN 135 B O GLN 135 B N LYS 132 B N LYS 132 B N THR 129 B N THR 129 B O VAL 174 B O VAL 174 B N TYR 171 B N TYR 171 B O TRP 188 B O TRP 188 1 A ALA 1 A ALA 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A THR 3 A THR 3 1 Y 1 A PRO 4 A PRO 4 1 Y 1 A VAL 5 A VAL 5 1 Y 1 A PHE 6 A PHE 6 1 Y 1 A TRP 7 A TRP 7 1 Y 1 A ASP 8 A ASP 8 1 Y 1 A ASP 9 A ASP 9 1 Y 1 A PRO 10 A PRO 10 1 Y 1 B GLY 191 B GLY 191 1 Y 1 9.69 1.50 119.30 128.99 A A A C N CA GLU PRO PRO 166 167 167 Y 1 A ILE 25 36.02 -107.71 1 A GLU 36 75.95 -19.53 1 A ALA 57 11.01 -68.71 1 A GLN 63 69.67 -32.91 1 A PRO 126 -69.48 77.14 1 A SER 136 70.64 -21.12 1 A PRO 167 -34.52 -30.98 1 A LEU 170 -162.51 89.70 1 A GLU 178 38.04 59.34 1 A ILE 179 65.87 -72.58 1 A TYR 182 89.97 115.66 1 A PRO 190 -66.63 99.89 1 B ALA 15 76.45 -62.35 1 B ASN 28 57.36 -156.75 1 B LEU 32 -96.67 -76.20 1 B CYS 45 -133.95 -139.73 1 B GLU 46 -11.26 84.01 1 B GLU 63 -77.99 45.15 1 B GLN 83 -29.80 -64.25 1 B PHE 106 -82.20 -115.76 1 B THR 108 99.25 160.31 1 B PRO 123 -72.75 -169.59 1 B HIS 140 -163.44 100.26 1 B GLU 144 -104.41 -104.61 1 B LYS 145 173.80 -151.49 1 B ALA 147 9.79 100.35 PARHCSDX.PRO TOPHCSDX.PRO PARAM3_MOD.CHO TOPH3.CHO PARAMCSDX.MISC 64.1 -1.46 0.00 0.00 -1.46 0.00 2.92 0.256 0.010 0.205 0.205 3.10 12.00 690 13888 13711 5.0 98.5 RANDOM 100000.00 0.010000 1 RESTRAINED THROUGHOUT 0.0 MR,MIR 0.45 0.37 5.00 0.79 0.67 3.10 12.00 0 2962 28 0 2934 0.009 1.9 25.7 1.26 0.345 0.038 0.334 3.21 78 1225 10 6.0 95.6 74.5 3.1 20 1K8I 13888 13711 1 -3.0 0.091 1 16.2 4.56 98.1 3.1 3.2 1.71 1303 0.482 1 95.2 data reduction DENZO data scaling SCALEPACK phasing AMoRE model building X-PLOR refinement X-PLOR 3.851 phasing X-PLOR MHC class II H2-M alpha chain, MHC class II H2-M beta 2 chain CRYSTAL STRUCTURE OF MOUSE H2-DM 1 N N 2 N N 3 N N 3 N N A ALA 57 A ALA 57 HELX_P A GLY 62 A GLY 62 1 1 6 A ASP 65 A ASP 65 HELX_P A GLU 82 A GLU 82 1 2 18 A GLU 82 A GLU 82 HELX_P A GLU 88 A GLU 88 1 3 7 B LEU 50 B LEU 50 HELX_P B GLU 63 B GLU 63 1 4 14 B GLN 64 B GLN 64 HELX_P B GLY 74 B GLY 74 1 5 11 B GLY 74 B GLY 74 HELX_P B HIS 91 B HIS 91 1 6 18 disulf 2.032 A CYS 21 A SG CYS 21 1_555 A CYS 76 A SG CYS 76 1_555 disulf 2.013 A CYS 118 A SG CYS 118 1_555 A CYS 173 A SG CYS 173 1_555 disulf 2.028 B CYS 10 B SG CYS 10 1_555 B CYS 78 B SG CYS 78 1_555 disulf 2.035 B CYS 24 B SG CYS 24 1_555 B CYS 34 B SG CYS 34 1_555 disulf 2.032 B CYS 116 B SG CYS 116 1_555 B CYS 173 B SG CYS 173 1_555 covale 1.456 one N-Glycosylation A ASN 12 A ND2 ASN 12 1_555 A NAG 192 C C1 NAG 1_555 covale 1.456 one N-Glycosylation A ASN 162 A ND2 ASN 162 1_555 A NAG 193 D C1 NAG 1_555 IMMUNE SYSTEM MHC, IMMUNE SYSTEM A PHE 124 A PHE 124 1 A PRO 125 A PRO 125 0.10 B TYR 122 B TYR 122 1 B PRO 123 B PRO 123 -0.07 2DMA_MOUSE UNP 1 1 P28078 MEHEQKSGAVLLRLLRLLWLLPHSWAVLEASTPVFWDDPQNHTFRHTLFCQDGIPNIGLSETYDEDELFSFDFSQNTRVP RLPDFAEWAQGQGDASAIAFDKSFCEMLMREVSPKLEGQIPVSRGLPVAEVFTLKPLEFGKPNTLVCFISNLFPPTLTVN WQLHSAPVEGASPTSISAVDGLTFQAFSYLNFTPEPFDLYSCTVTHEIDRYTAIAYWVPQNALPSDLLENALCGVAFGLG VLGTIMGIVFFLCSQRPCSGD Q31099_MOUSE UNP 2 1 Q31099 MAALWLLLLVLSLHCMGAGGFVAHVESTCVLNDAGTPQDFTYCVSFNKDLLACWDPDVGKIVPCEFGVLSRLAEIISNIL NEQESLIHRLQNGLQDCATHTQPFWDVLTHRTRAPSVRVAQTTPFNTREPVMLACYVWGFYPADVTITWMKNGQLVPSHS NKEKTAQPNGDWTYQTVSYLALTPSYGDVYTCVVQHSGTSEPIRGDWTPGLSPIQTVKVSVSAATLGLGFIIFCVGFFRW RKSHSSSYTPLPGSTYPEGRH 30 220 1K8I 1 191 P28078 A 1 1 191 20 210 1K8I 1 191 Q31099 B 2 1 191 6 8 4 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 48 A THR 48 A PRO 51 A PRO 51 A ASP 37 A ASP 37 A ASP 43 A ASP 43 A ILE 28 A ILE 28 A TYR 34 A TYR 34 A ASN 12 A ASN 12 A GLN 22 A GLN 22 B VAL 3 B VAL 3 B ASN 13 B ASN 13 B PRO 18 B PRO 18 B PHE 21 B PHE 21 A THR 48 A THR 48 A PRO 51 A PRO 51 A ASP 37 A ASP 37 A ASP 43 A ASP 43 A ILE 28 A ILE 28 A TYR 34 A TYR 34 A ASN 12 A ASN 12 A GLN 22 A GLN 22 B VAL 3 B VAL 3 B ASN 13 B ASN 13 B CYS 24 B CYS 24 B PHE 27 B PHE 27 B ALA 33 B ALA 33 B ASP 36 B ASP 36 B LYS 41 B LYS 41 B PRO 44 B PRO 44 A VAL 99 A VAL 99 A THR 104 A THR 104 A ASN 114 A ASN 114 A LEU 123 A LEU 123 A THR 154 A THR 154 A PHE 163 A PHE 163 A SER 146 A SER 146 A VAL 150 A VAL 150 A ALA 137 A ALA 137 A VAL 139 A VAL 139 A LEU 128 A LEU 128 A LEU 134 A LEU 134 A TYR 171 A TYR 171 A HIS 177 A HIS 177 A THR 183 A THR 183 A TRP 188 A TRP 188 B SER 97 B SER 97 B THR 103 B THR 103 B VAL 112 B VAL 112 B PHE 121 B PHE 121 B TYR 155 B TYR 155 B LEU 163 B LEU 163 B GLN 148 B GLN 148 B PRO 149 B PRO 149 B GLN 135 B GLN 135 B LEU 136 B LEU 136 B VAL 126 B VAL 126 B LYS 132 B LYS 132 B TYR 171 B TYR 171 B HIS 177 B HIS 177 B THR 180 B THR 180 B TRP 188 B TRP 188 79 I 4