1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Chang, C.-F. Chou, H.-T. Chuang, J.L. Chuang, D.T. Huang, T.-h. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 277 15865 15873 10.1074/jbc.M110952200 11839747 Solution structure and dynamics of the lipoic acid-bearing domain of human mitochondrial branched-chain alpha-keto acid dehydrogenase complex 2002 10.2210/pdb1k8o/pdb pdb_00001k8o 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 10662.938 E2 component of Branched-Chain alpha-Ketoacid Dehydrogenase 2.3.1.- LIPOIC ACID-BEARING DOMAIN 1 man polymer DIHYDROLIPOAMIDE BRANCHED CHAIN TRANSACYLASE no no MGQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET EALKDLEHHHHHH MGQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET EALKDLEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia Escherichia coli sample 9606 Homo sapiens 511693 Escherichia coli BL21 BL21 PLASMID pET28b database_2 pdbx_nmr_software pdbx_nmr_spectrometer struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Source and taxonomy Data collection Database references 1 0 2001-11-14 1 1 2008-04-27 1 2 2011-07-13 1 3 2016-05-25 1 4 2022-12-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details 1K8M contains the average structure of the same protein 5078 CONTAINS CHEMICAL SHIFT LISTS EXCLUDING FIRST MET RCSB Y PDBJ 2001-10-24 REL REL The structure was determined using triple-resonance NMR spectroscopy structure with the lowest energy and acceptable covalent geometry 100 20 3D_15N-separated_NOESY HNHA 3D_13C-separated_NOESY 100mM NaCl 7.5 ambient 310 K 100mM NaCl 7.5 ambient 310 K distance geometry simulated annealing molecular dynamics torsion angle dynamics 2mM protein U-15N; 50mM phosphate buffer, pH7.5, 100mM NaCl, 0.02% (w/v) NaN3 90% H2O, 10% D2O or 100% D2O 2mM protein U-15N,13C; 50mM phosphate buffer, pH7.5, 100mM NaCl, 0.02% (w/v) NaN3 90% H2O, 10% D2O or 100% D2O Bruker collection XwinNMR 2.0 Bruker processing XwinNMR 2.0 Bruker data analysis AURELIA 2.0.6 Nilges et al. refinement ARIA 1.0 Nilges et al. structure solution ARIA 1.0 600 Bruker AVANCE 500 Bruker AMX MET 1 n 1 MET 1 A GLY 2 n 2 GLY 2 A GLN 3 n 3 GLN 3 A VAL 4 n 4 VAL 4 A VAL 5 n 5 VAL 5 A GLN 6 n 6 GLN 6 A PHE 7 n 7 PHE 7 A LYS 8 n 8 LYS 8 A LEU 9 n 9 LEU 9 A SER 10 n 10 SER 10 A ASP 11 n 11 ASP 11 A ILE 12 n 12 ILE 12 A GLY 13 n 13 GLY 13 A GLU 14 n 14 GLU 14 A GLY 15 n 15 GLY 15 A ILE 16 n 16 ILE 16 A ARG 17 n 17 ARG 17 A GLU 18 n 18 GLU 18 A VAL 19 n 19 VAL 19 A THR 20 n 20 THR 20 A VAL 21 n 21 VAL 21 A LYS 22 n 22 LYS 22 A GLU 23 n 23 GLU 23 A TRP 24 n 24 TRP 24 A TYR 25 n 25 TYR 25 A VAL 26 n 26 VAL 26 A LYS 27 n 27 LYS 27 A GLU 28 n 28 GLU 28 A GLY 29 n 29 GLY 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A SER 33 n 33 SER 33 A GLN 34 n 34 GLN 34 A PHE 35 n 35 PHE 35 A ASP 36 n 36 ASP 36 A SER 37 n 37 SER 37 A ILE 38 n 38 ILE 38 A CYS 39 n 39 CYS 39 A GLU 40 n 40 GLU 40 A VAL 41 n 41 VAL 41 A GLN 42 n 42 GLN 42 A SER 43 n 43 SER 43 A ASP 44 n 44 ASP 44 A LYS 45 n 45 LYS 45 A ALA 46 n 46 ALA 46 A SER 47 n 47 SER 47 A VAL 48 n 48 VAL 48 A THR 49 n 49 THR 49 A ILE 50 n 50 ILE 50 A THR 51 n 51 THR 51 A SER 52 n 52 SER 52 A ARG 53 n 53 ARG 53 A TYR 54 n 54 TYR 54 A ASP 55 n 55 ASP 55 A GLY 56 n 56 GLY 56 A VAL 57 n 57 VAL 57 A ILE 58 n 58 ILE 58 A LYS 59 n 59 LYS 59 A LYS 60 n 60 LYS 60 A LEU 61 n 61 LEU 61 A TYR 62 n 62 TYR 62 A TYR 63 n 63 TYR 63 A ASN 64 n 64 ASN 64 A LEU 65 n 65 LEU 65 A ASP 66 n 66 ASP 66 A ASP 67 n 67 ASP 67 A ILE 68 n 68 ILE 68 A ALA 69 n 69 ALA 69 A TYR 70 n 70 TYR 70 A VAL 71 n 71 VAL 71 A GLY 72 n 72 GLY 72 A LYS 73 n 73 LYS 73 A PRO 74 n 74 PRO 74 A LEU 75 n 75 LEU 75 A VAL 76 n 76 VAL 76 A ASP 77 n 77 ASP 77 A ILE 78 n 78 ILE 78 A GLU 79 n 79 GLU 79 A THR 80 n 80 THR 80 A GLU 81 n 81 GLU 81 A ALA 82 n 82 ALA 82 A LEU 83 n 83 LEU 83 A LYS 84 n 84 LYS 84 A ASP 85 n 85 ASP 85 A LEU 86 n 86 LEU 86 A GLU 87 n 87 GLU 87 A n 88 88 A n 89 89 A n 90 90 A n 91 91 A n 92 92 A n 93 93 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 5 A N VAL 5 A O ILE 78 A O ILE 78 A O GLU 79 A O GLU 79 A N VAL 57 A N VAL 57 A O VAL 48 A O VAL 48 A N VAL 41 A N VAL 41 A O GLU 40 A O GLU 40 A N GLU 23 A N GLU 23 A N VAL 19 A N VAL 19 A O ALA 69 A O ALA 69 1 A HIS 88 A HIS 88 1 Y 1 A HIS 89 A HIS 89 1 Y 1 A HIS 90 A HIS 90 1 Y 1 A HIS 91 A HIS 91 1 Y 1 A HIS 92 A HIS 92 1 Y 1 A HIS 93 A HIS 93 1 Y 2 A HIS 88 A HIS 88 1 Y 2 A HIS 89 A HIS 89 1 Y 2 A HIS 90 A HIS 90 1 Y 2 A HIS 91 A HIS 91 1 Y 2 A HIS 92 A HIS 92 1 Y 2 A HIS 93 A HIS 93 1 Y 3 A HIS 88 A HIS 88 1 Y 3 A HIS 89 A HIS 89 1 Y 3 A HIS 90 A HIS 90 1 Y 3 A HIS 91 A HIS 91 1 Y 3 A HIS 92 A HIS 92 1 Y 3 A HIS 93 A HIS 93 1 Y 4 A HIS 88 A HIS 88 1 Y 4 A HIS 89 A HIS 89 1 Y 4 A HIS 90 A HIS 90 1 Y 4 A HIS 91 A HIS 91 1 Y 4 A HIS 92 A HIS 92 1 Y 4 A HIS 93 A HIS 93 1 Y 5 A HIS 88 A HIS 88 1 Y 5 A HIS 89 A HIS 89 1 Y 5 A HIS 90 A HIS 90 1 Y 5 A HIS 91 A HIS 91 1 Y 5 A HIS 92 A HIS 92 1 Y 5 A HIS 93 A HIS 93 1 Y 6 A HIS 88 A HIS 88 1 Y 6 A HIS 89 A HIS 89 1 Y 6 A HIS 90 A HIS 90 1 Y 6 A HIS 91 A HIS 91 1 Y 6 A HIS 92 A HIS 92 1 Y 6 A HIS 93 A HIS 93 1 Y 7 A HIS 88 A HIS 88 1 Y 7 A HIS 89 A HIS 89 1 Y 7 A HIS 90 A HIS 90 1 Y 7 A HIS 91 A HIS 91 1 Y 7 A HIS 92 A HIS 92 1 Y 7 A HIS 93 A HIS 93 1 Y 8 A HIS 88 A HIS 88 1 Y 8 A HIS 89 A HIS 89 1 Y 8 A HIS 90 A HIS 90 1 Y 8 A HIS 91 A HIS 91 1 Y 8 A HIS 92 A HIS 92 1 Y 8 A HIS 93 A HIS 93 1 Y 9 A HIS 88 A HIS 88 1 Y 9 A HIS 89 A HIS 89 1 Y 9 A HIS 90 A HIS 90 1 Y 9 A HIS 91 A HIS 91 1 Y 9 A HIS 92 A HIS 92 1 Y 9 A HIS 93 A HIS 93 1 Y 10 A HIS 88 A HIS 88 1 Y 10 A HIS 89 A HIS 89 1 Y 10 A HIS 90 A HIS 90 1 Y 10 A HIS 91 A HIS 91 1 Y 10 A HIS 92 A HIS 92 1 Y 10 A HIS 93 A HIS 93 1 Y 11 A HIS 88 A HIS 88 1 Y 11 A HIS 89 A HIS 89 1 Y 11 A HIS 90 A HIS 90 1 Y 11 A HIS 91 A HIS 91 1 Y 11 A HIS 92 A HIS 92 1 Y 11 A HIS 93 A HIS 93 1 Y 12 A HIS 88 A HIS 88 1 Y 12 A HIS 89 A HIS 89 1 Y 12 A HIS 90 A HIS 90 1 Y 12 A HIS 91 A HIS 91 1 Y 12 A HIS 92 A HIS 92 1 Y 12 A HIS 93 A HIS 93 1 Y 13 A HIS 88 A HIS 88 1 Y 13 A HIS 89 A HIS 89 1 Y 13 A HIS 90 A HIS 90 1 Y 13 A HIS 91 A HIS 91 1 Y 13 A HIS 92 A HIS 92 1 Y 13 A HIS 93 A HIS 93 1 Y 14 A HIS 88 A HIS 88 1 Y 14 A HIS 89 A HIS 89 1 Y 14 A HIS 90 A HIS 90 1 Y 14 A HIS 91 A HIS 91 1 Y 14 A HIS 92 A HIS 92 1 Y 14 A HIS 93 A HIS 93 1 Y 15 A HIS 88 A HIS 88 1 Y 15 A HIS 89 A HIS 89 1 Y 15 A HIS 90 A HIS 90 1 Y 15 A HIS 91 A HIS 91 1 Y 15 A HIS 92 A HIS 92 1 Y 15 A HIS 93 A HIS 93 1 Y 16 A HIS 88 A HIS 88 1 Y 16 A HIS 89 A HIS 89 1 Y 16 A HIS 90 A HIS 90 1 Y 16 A HIS 91 A HIS 91 1 Y 16 A HIS 92 A HIS 92 1 Y 16 A HIS 93 A HIS 93 1 Y 17 A HIS 88 A HIS 88 1 Y 17 A HIS 89 A HIS 89 1 Y 17 A HIS 90 A HIS 90 1 Y 17 A HIS 91 A HIS 91 1 Y 17 A HIS 92 A HIS 92 1 Y 17 A HIS 93 A HIS 93 1 Y 18 A HIS 88 A HIS 88 1 Y 18 A HIS 89 A HIS 89 1 Y 18 A HIS 90 A HIS 90 1 Y 18 A HIS 91 A HIS 91 1 Y 18 A HIS 92 A HIS 92 1 Y 18 A HIS 93 A HIS 93 1 Y 19 A HIS 88 A HIS 88 1 Y 19 A HIS 89 A HIS 89 1 Y 19 A HIS 90 A HIS 90 1 Y 19 A HIS 91 A HIS 91 1 Y 19 A HIS 92 A HIS 92 1 Y 19 A HIS 93 A HIS 93 1 Y 20 A HIS 88 A HIS 88 1 Y 20 A HIS 89 A HIS 89 1 Y 20 A HIS 90 A HIS 90 1 Y 20 A HIS 91 A HIS 91 1 Y 20 A HIS 92 A HIS 92 1 Y 20 A HIS 93 A HIS 93 1 Y 1 A A H O VAL GLY 32 56 1.55 2 A A H O VAL GLY 32 56 1.56 2 A A O H VAL ALA 19 69 1.58 3 A A H O VAL GLY 32 56 1.57 4 A A H O VAL GLY 32 56 1.55 5 A A H O VAL GLY 32 56 1.57 6 A A H O VAL GLY 32 56 1.56 7 A A H O VAL GLY 32 56 1.55 8 A A H O VAL GLY 32 56 1.59 9 A A H O VAL GLY 32 56 1.56 10 A A H O VAL GLY 32 56 1.57 11 A A H O VAL GLY 32 56 1.56 12 A A H O VAL GLY 32 56 1.60 13 A A H O VAL GLY 32 56 1.58 14 A A H O VAL GLY 32 56 1.56 15 A A H O VAL GLY 32 56 1.57 16 A A H O VAL GLY 32 56 1.56 18 A A H O VAL GLY 32 56 1.56 19 A A H O VAL GLY 32 56 1.60 20 A A H O VAL GLY 32 56 1.57 20 A A H O LYS GLU 22 40 1.58 20 A A O H VAL ILE 5 78 1.59 1 A LYS 45 -72.43 -71.03 2 A LEU 9 -37.36 145.27 2 A SER 10 -52.90 -85.96 2 A GLU 14 -40.65 98.41 2 A ILE 16 -129.07 -162.02 2 A ILE 38 -85.62 -72.74 2 A ALA 82 -38.77 111.06 3 A ASP 11 171.99 -29.24 3 A ILE 12 -98.66 -95.74 3 A ILE 16 -71.52 -167.14 3 A ILE 38 -90.28 -83.07 3 A SER 52 -97.97 -60.53 4 A ASP 11 86.93 -18.22 4 A ILE 38 -84.55 -73.67 4 A ALA 82 -39.06 113.14 5 A ASP 11 -169.29 -40.04 5 A ILE 38 -90.63 -78.04 5 A ASN 64 -104.87 -168.29 5 A ALA 82 -38.02 111.71 6 A ASP 11 -135.43 -40.23 6 A ILE 38 -85.87 -70.97 6 A PRO 74 -46.86 165.24 6 A LEU 75 -120.27 -50.04 6 A ALA 82 -38.24 115.20 7 A ASP 11 178.10 -35.36 7 A GLU 14 -65.98 77.63 8 A ASP 11 85.97 -16.76 8 A GLU 14 -56.32 85.12 8 A ILE 38 -76.84 -71.22 9 A ASP 11 85.56 -16.79 9 A GLU 14 -59.39 82.70 9 A ILE 38 -89.64 -73.91 9 A LYS 45 -86.96 -72.80 9 A ARG 53 46.96 15.54 10 A ASP 11 176.92 -33.84 10 A ARG 17 151.29 146.44 10 A ILE 38 -94.87 -83.66 10 A SER 52 -98.47 -63.85 10 A ALA 82 -39.88 114.58 11 A ASP 11 -177.31 -40.26 11 A GLU 14 -62.48 92.27 11 A ILE 16 -62.30 -172.85 11 A ILE 38 -82.95 -70.49 11 A LYS 45 -63.68 -74.01 12 A ASP 11 87.11 -22.17 12 A ILE 38 -90.85 -80.90 12 A PRO 74 -46.37 152.01 13 A ASP 11 87.86 -16.24 13 A GLU 14 -47.76 93.44 13 A ILE 16 -105.51 -158.05 13 A ILE 38 -87.16 -79.35 14 A GLU 14 -45.20 105.80 14 A ILE 16 -125.05 -161.64 14 A ILE 38 -91.20 -75.24 15 A ASP 11 175.12 -35.12 15 A ILE 16 -65.09 -168.68 15 A ILE 38 -91.72 -83.04 15 A SER 52 -107.37 -60.42 16 A ASP 11 -159.11 -42.05 16 A ILE 38 -79.94 -75.73 17 A ASP 11 87.69 -24.16 17 A ARG 17 157.09 134.24 17 A ILE 38 -91.23 -82.42 17 A SER 52 -94.92 -64.31 17 A ARG 53 77.19 -2.26 17 A ALA 82 -37.91 110.91 18 A ASP 11 -178.86 -38.87 18 A ILE 38 -85.46 -72.33 18 A LYS 84 -17.83 -48.72 18 A LEU 86 -141.13 -31.73 19 A SER 10 -141.50 15.35 19 A ILE 16 -133.96 -154.53 19 A ILE 38 -85.32 -73.56 19 A SER 52 -102.96 -72.14 19 A ARG 53 82.79 -11.44 19 A ALA 82 -39.02 112.24 20 A LYS 84 -17.55 -47.22 20 A LEU 86 -141.25 -31.30 Solution Structure of the Lipoic Acid-Bearing Domain of the E2 component of Human, Mitochondrial Branched-Chain alpha-Ketoacid Dehydrogenase 1 N N TRANSFERASE Lipoyl Acid Bearing, Human BCKD, Experimental NMR data, TRANSFERASE ODB2_HUMAN UNP 1 2 P11182 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE ALKD 62 145 1K8O 2 85 P11182 A 1 2 85 1 initiating methionine MET 1 1K8O A P11182 UNP 1 1 expression tag LEU 86 1K8O A P11182 UNP 86 1 expression tag GLU 87 1K8O A P11182 UNP 87 1 expression tag HIS 88 1K8O A P11182 UNP 88 1 expression tag HIS 89 1K8O A P11182 UNP 89 1 expression tag HIS 90 1K8O A P11182 UNP 90 1 expression tag HIS 91 1K8O A P11182 UNP 91 1 expression tag HIS 92 1K8O A P11182 UNP 92 1 expression tag HIS 93 1K8O A P11182 UNP 93 3 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 5 A VAL 5 A LYS 8 A LYS 8 A PRO 74 A PRO 74 A GLU 79 A GLU 79 A VAL 57 A VAL 57 A LYS 60 A LYS 60 A SER 47 A SER 47 A THR 49 A THR 49 A CYS 39 A CYS 39 A GLN 42 A GLN 42 A VAL 19 A VAL 19 A TRP 24 A TRP 24 A ILE 68 A ILE 68 A ALA 69 A ALA 69