0.006894
0.000000
0.002591
0.000000
0.024776
0.000000
0.000000
0.000000
0.013699
0.00000
0.00000
0.00000
Hoang, C.
Ferre-D'Amare, A.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
110.60
90.00
145.054
40.361
77.987
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C9 H14 F N2 O10 P
360.187
n
(5S,6R)-5-FLUORO-6-HYDROXY-PSEUDOURIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
R
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
S
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
N
C
N
162
N
N
N
163
N
C
N
164
S
C
N
165
R
C
N
166
N
O
N
167
N
O
N
168
R
C
N
169
R
C
N
170
N
O
N
171
S
C
N
172
R
C
N
173
N
O
N
174
N
O
N
175
N
C
N
176
N
O
N
177
N
P
N
178
N
O
N
179
N
O
N
180
N
O
N
181
N
F
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
O
N
198
N
P
N
199
N
O
N
200
N
O
N
201
N
O
N
202
N
C
N
203
R
C
N
204
N
O
N
205
S
C
N
206
N
O
N
207
R
C
N
208
N
O
N
209
R
C
Y
210
N
N
Y
211
N
C
Y
212
N
N
Y
213
N
C
N
214
N
C
N
215
N
O
N
216
N
N
N
217
N
C
N
218
N
N
N
219
N
N
Y
220
N
C
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
O
N
243
N
N
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
O
N
263
N
O
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
Y
289
N
C
Y
290
N
N
Y
291
N
C
Y
292
N
C
Y
293
N
N
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
S
C
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
C
N
360
N
N
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
S
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
N
N
438
S
C
N
439
N
C
N
440
N
O
N
441
N
C
N
442
N
O
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
S
N
452
N
O
N
453
N
O
N
454
N
O
N
455
N
O
N
456
N
N
N
457
S
C
N
458
N
C
N
459
N
O
N
460
R
C
N
461
N
O
N
462
N
C
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
N
N
474
S
C
N
475
N
C
N
476
N
O
N
477
N
C
Y
478
N
C
Y
479
N
C
Y
480
N
C
Y
481
N
C
Y
482
N
C
Y
483
N
C
N
484
N
O
N
485
N
O
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
O
N
498
N
P
N
499
N
O
N
500
N
O
N
501
N
O
N
502
N
C
N
503
R
C
N
504
N
O
N
505
S
C
N
506
N
O
N
507
R
C
N
508
N
O
N
509
R
C
N
510
N
N
N
511
N
C
N
512
N
O
N
513
N
N
N
514
N
C
N
515
N
O
N
516
N
C
N
517
N
C
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
N
N
532
S
C
N
533
N
C
N
534
N
O
N
535
N
C
N
536
N
C
N
537
N
C
N
538
N
O
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
Y
220
N
sing
Y
221
N
sing
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
Y
226
N
doub
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
Y
293
N
sing
Y
294
N
doub
Y
295
N
doub
N
296
N
sing
Y
297
N
sing
N
298
N
sing
Y
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
doub
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
doub
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
doub
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
doub
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
Y
474
N
doub
Y
475
N
sing
Y
476
N
sing
N
477
N
sing
Y
478
N
doub
N
479
N
sing
Y
480
N
doub
N
481
N
sing
Y
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
doub
N
518
N
sing
N
519
N
doub
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
doub
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
107
929
939
10.1016/S0092-8674(01)00618-3
11779468
Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme.
2001
10.2210/pdb1k8w/pdb
pdb_00001k8w
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
100
1
monochromator
CCD
2001-06-07
ADSC QUANTUM 4
osmic confocal
IMAGE PLATE
2001-07-04
RIGAKU RAXIS IIC
double crystal
MAD
M
x-ray
1
osmic confocal mirror
SINGLE WAVELENGTH
M
x-ray
1
0.9611
1.0
0.9792
1.0
0.9794
1.0
1.5418
1.0
5.0.2
ALS
0.9611, 0.9792, 0.9794
SYNCHROTRON
ALS BEAMLINE 5.0.2
1.5418
ROTATING ANODE
RIGAKU RU200
T stem-loop RNA
7062.208
5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*UP*(FHU)P*CP*GP*AP*UP*CP*CP*CP*GP*UP*UP*GP*C)-3'
1
syn
polymer
36638.551
tRNA Pseudouridine Synthase B
4.2.1.70
Residues 10-314
Residues 1-9 replaced with a His-Tag
1
man
polymer
96.063
SULFATE ION
10
syn
non-polymer
18.015
water
259
nat
water
TruB Pseudouridine Synthase, tRNA Pseudouridine 55 Synthase, Pseudouridylate synthase
no
yes
GGCAACGGU(FHU)CGAUCCCGUUGC
GGCAACGGUUCGAUCCCGUUGC
B
polyribonucleotide
no
no
MGHHHHHHHHHHSSGHIEGRHMDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ
YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP
REARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE
QQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR
LVVEYPA
MGHHHHHHHHHHSSGHIEGRHMDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ
YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP
REARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE
QQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR
LVVEYPA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
2
2.44
49.67
VAPOR DIFFUSION, SITTING DROP
7.5
ammonium sulfate, magnesium chloride, peg400, hepes, tcep, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
295
(NH4)2SO4
1
MgCl2
1
PEG 400
1
HEPES
1
TCEP
1
3.308
1
19
B
402
B
422
2.316
B_G402:C422_B
1
-9.650
-0.359
0.189
-0.106
5.809
1
19
B
403
B
421
1.556
B_C403:G421_B
2
-12.568
0.314
-0.126
-0.212
-5.134
1
20
B
404
B
420
1.117
B_A404:U420_B
3
-9.074
0.028
0.031
-0.082
-4.351
1
20
B
405
B
419
-3.027
B_A405:U419_B
4
-11.197
0.034
-0.028
-0.158
-4.467
1
19
B
406
B
418
1.716
B_C406:G418_B
5
-11.319
0.302
0.211
-0.169
-12.117
1
19
B
407
B
417
-0.511
B_G407:C417_B
6
-14.966
-0.153
-0.120
-0.122
-9.001
1
19
B
408
B
416
-0.615
B_G408:C416_B
7
-10.039
-0.013
0.173
-0.127
19.607
4
24
B
409
B
413
-95.544
B_U409:A413_B
8
16.369
4.256
0.626
-2.165
2.967
35.660
B
B
402
403
8.669
B
B
422
421
3.238
5.290
-0.202
-1.595
BB_G402C403:G421C422_BB
1
1.229
-2.015
35.257
-3.337
0.500
2.345
33.275
B
B
403
404
24.832
B
B
421
420
3.401
13.812
0.249
-1.888
BB_C403A404:U420G421_BB
2
0.120
-0.215
30.347
-5.422
-0.416
2.944
33.779
B
B
404
405
9.664
B
B
420
419
3.210
5.591
-0.534
-1.361
BB_A404A405:U419U420_BB
3
0.323
-0.558
33.325
-3.200
0.968
2.891
33.592
B
B
405
406
11.049
B
B
419
418
3.187
6.345
0.954
-1.602
BB_A405C406:G418U419_BB
4
2.093
-3.645
32.939
-3.747
-1.330
2.609
31.510
B
B
406
407
17.660
B
B
418
417
3.316
9.387
0.461
-2.016
BB_C406G407:C417G418_BB
5
6.262
-11.781
29.468
-5.353
0.246
3.085
32.989
B
B
407
408
2.622
B
B
417
416
3.144
1.487
0.512
-1.957
BB_G407G408:C416C417_BB
6
2.578
-4.546
32.859
-3.687
-0.484
2.839
72.202
B
B
408
409
2.390
B
B
416
413
2.984
2.816
-2.423
-1.432
BB_G408U409:A413C416_BB
7
3.191
-2.709
72.094
-1.299
2.151
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-12-31
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2001-10-25
REL
REL
SO4
SULFATE ION
HOH
water
SO4
907
3
SO4
SO4
907
B
SO4
901
3
SO4
SO4
901
A
SO4
902
3
SO4
SO4
902
A
SO4
903
3
SO4
SO4
903
A
SO4
904
3
SO4
SO4
904
A
SO4
905
3
SO4
SO4
905
A
SO4
906
3
SO4
SO4
906
A
SO4
908
3
SO4
SO4
908
A
SO4
909
3
SO4
SO4
909
A
SO4
910
3
SO4
SO4
910
A
HOH
503
4
HOH
HOH
503
B
HOH
512
4
HOH
HOH
512
B
HOH
514
4
HOH
HOH
514
B
HOH
526
4
HOH
HOH
526
B
HOH
530
4
HOH
HOH
530
B
HOH
533
4
HOH
HOH
533
B
HOH
535
4
HOH
HOH
535
B
HOH
539
4
HOH
HOH
539
B
HOH
548
4
HOH
HOH
548
B
HOH
554
4
HOH
HOH
554
B
HOH
559
4
HOH
HOH
559
B
HOH
560
4
HOH
HOH
560
B
HOH
564
4
HOH
HOH
564
B
HOH
565
4
HOH
HOH
565
B
HOH
568
4
HOH
HOH
568
B
HOH
569
4
HOH
HOH
569
B
HOH
571
4
HOH
HOH
571
B
HOH
573
4
HOH
HOH
573
B
HOH
580
4
HOH
HOH
580
B
HOH
585
4
HOH
HOH
585
B
HOH
588
4
HOH
HOH
588
B
HOH
590
4
HOH
HOH
590
B
HOH
599
4
HOH
HOH
599
B
HOH
608
4
HOH
HOH
608
B
HOH
609
4
HOH
HOH
609
B
HOH
610
4
HOH
HOH
610
B
HOH
611
4
HOH
HOH
611
B
HOH
612
4
HOH
HOH
612
B
HOH
613
4
HOH
HOH
613
B
HOH
621
4
HOH
HOH
621
B
HOH
622
4
HOH
HOH
622
B
HOH
623
4
HOH
HOH
623
B
HOH
624
4
HOH
HOH
624
B
HOH
631
4
HOH
HOH
631
B
HOH
632
4
HOH
HOH
632
B
HOH
633
4
HOH
HOH
633
B
HOH
634
4
HOH
HOH
634
B
HOH
644
4
HOH
HOH
644
B
HOH
653
4
HOH
HOH
653
B
HOH
656
4
HOH
HOH
656
B
HOH
664
4
HOH
HOH
664
B
HOH
684
4
HOH
HOH
684
B
HOH
694
4
HOH
HOH
694
B
HOH
701
4
HOH
HOH
701
B
HOH
709
4
HOH
HOH
709
B
HOH
714
4
HOH
HOH
714
B
HOH
721
4
HOH
HOH
721
B
HOH
722
4
HOH
HOH
722
B
HOH
725
4
HOH
HOH
725
B
HOH
735
4
HOH
HOH
735
B
HOH
737
4
HOH
HOH
737
B
HOH
745
4
HOH
HOH
745
B
HOH
746
4
HOH
HOH
746
B
HOH
750
4
HOH
HOH
750
B
HOH
751
4
HOH
HOH
751
B
HOH
752
4
HOH
HOH
752
B
HOH
754
4
HOH
HOH
754
B
HOH
501
4
HOH
HOH
501
A
HOH
502
4
HOH
HOH
502
A
HOH
504
4
HOH
HOH
504
A
HOH
505
4
HOH
HOH
505
A
HOH
506
4
HOH
HOH
506
A
HOH
507
4
HOH
HOH
507
A
HOH
508
4
HOH
HOH
508
A
HOH
509
4
HOH
HOH
509
A
HOH
510
4
HOH
HOH
510
A
HOH
511
4
HOH
HOH
511
A
HOH
513
4
HOH
HOH
513
A
HOH
515
4
HOH
HOH
515
A
HOH
516
4
HOH
HOH
516
A
HOH
517
4
HOH
HOH
517
A
HOH
518
4
HOH
HOH
518
A
HOH
519
4
HOH
HOH
519
A
HOH
520
4
HOH
HOH
520
A
HOH
521
4
HOH
HOH
521
A
HOH
522
4
HOH
HOH
522
A
HOH
523
4
HOH
HOH
523
A
HOH
524
4
HOH
HOH
524
A
HOH
525
4
HOH
HOH
525
A
HOH
527
4
HOH
HOH
527
A
HOH
528
4
HOH
HOH
528
A
HOH
529
4
HOH
HOH
529
A
HOH
531
4
HOH
HOH
531
A
HOH
532
4
HOH
HOH
532
A
HOH
534
4
HOH
HOH
534
A
HOH
536
4
HOH
HOH
536
A
HOH
537
4
HOH
HOH
537
A
HOH
538
4
HOH
HOH
538
A
HOH
540
4
HOH
HOH
540
A
HOH
541
4
HOH
HOH
541
A
HOH
542
4
HOH
HOH
542
A
HOH
543
4
HOH
HOH
543
A
HOH
544
4
HOH
HOH
544
A
HOH
545
4
HOH
HOH
545
A
HOH
546
4
HOH
HOH
546
A
HOH
547
4
HOH
HOH
547
A
HOH
549
4
HOH
HOH
549
A
HOH
550
4
HOH
HOH
550
A
HOH
551
4
HOH
HOH
551
A
HOH
552
4
HOH
HOH
552
A
HOH
553
4
HOH
HOH
553
A
HOH
555
4
HOH
HOH
555
A
HOH
556
4
HOH
HOH
556
A
HOH
557
4
HOH
HOH
557
A
HOH
558
4
HOH
HOH
558
A
HOH
561
4
HOH
HOH
561
A
HOH
562
4
HOH
HOH
562
A
HOH
563
4
HOH
HOH
563
A
HOH
566
4
HOH
HOH
566
A
HOH
567
4
HOH
HOH
567
A
HOH
570
4
HOH
HOH
570
A
HOH
572
4
HOH
HOH
572
A
HOH
574
4
HOH
HOH
574
A
HOH
575
4
HOH
HOH
575
A
HOH
576
4
HOH
HOH
576
A
HOH
577
4
HOH
HOH
577
A
HOH
578
4
HOH
HOH
578
A
HOH
579
4
HOH
HOH
579
A
HOH
581
4
HOH
HOH
581
A
HOH
582
4
HOH
HOH
582
A
HOH
583
4
HOH
HOH
583
A
HOH
584
4
HOH
HOH
584
A
HOH
586
4
HOH
HOH
586
A
HOH
587
4
HOH
HOH
587
A
HOH
589
4
HOH
HOH
589
A
HOH
591
4
HOH
HOH
591
A
HOH
592
4
HOH
HOH
592
A
HOH
593
4
HOH
HOH
593
A
HOH
594
4
HOH
HOH
594
A
HOH
595
4
HOH
HOH
595
A
HOH
596
4
HOH
HOH
596
A
HOH
597
4
HOH
HOH
597
A
HOH
598
4
HOH
HOH
598
A
HOH
600
4
HOH
HOH
600
A
HOH
601
4
HOH
HOH
601
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
604
4
HOH
HOH
604
A
HOH
605
4
HOH
HOH
605
A
HOH
606
4
HOH
HOH
606
A
HOH
607
4
HOH
HOH
607
A
HOH
614
4
HOH
HOH
614
A
HOH
615
4
HOH
HOH
615
A
HOH
616
4
HOH
HOH
616
A
HOH
617
4
HOH
HOH
617
A
HOH
618
4
HOH
HOH
618
A
HOH
619
4
HOH
HOH
619
A
HOH
620
4
HOH
HOH
620
A
HOH
625
4
HOH
HOH
625
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
628
4
HOH
HOH
628
A
HOH
629
4
HOH
HOH
629
A
HOH
630
4
HOH
HOH
630
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
639
4
HOH
HOH
639
A
HOH
640
4
HOH
HOH
640
A
HOH
641
4
HOH
HOH
641
A
HOH
642
4
HOH
HOH
642
A
HOH
643
4
HOH
HOH
643
A
HOH
645
4
HOH
HOH
645
A
HOH
646
4
HOH
HOH
646
A
HOH
647
4
HOH
HOH
647
A
HOH
648
4
HOH
HOH
648
A
HOH
649
4
HOH
HOH
649
A
HOH
650
4
HOH
HOH
650
A
HOH
651
4
HOH
HOH
651
A
HOH
652
4
HOH
HOH
652
A
HOH
654
4
HOH
HOH
654
A
HOH
655
4
HOH
HOH
655
A
HOH
657
4
HOH
HOH
657
A
HOH
658
4
HOH
HOH
658
A
HOH
659
4
HOH
HOH
659
A
HOH
660
4
HOH
HOH
660
A
HOH
661
4
HOH
HOH
661
A
HOH
662
4
HOH
HOH
662
A
HOH
663
4
HOH
HOH
663
A
HOH
665
4
HOH
HOH
665
A
HOH
666
4
HOH
HOH
666
A
HOH
667
4
HOH
HOH
667
A
HOH
668
4
HOH
HOH
668
A
HOH
669
4
HOH
HOH
669
A
HOH
670
4
HOH
HOH
670
A
HOH
671
4
HOH
HOH
671
A
HOH
672
4
HOH
HOH
672
A
HOH
673
4
HOH
HOH
673
A
HOH
674
4
HOH
HOH
674
A
HOH
675
4
HOH
HOH
675
A
HOH
676
4
HOH
HOH
676
A
HOH
677
4
HOH
HOH
677
A
HOH
678
4
HOH
HOH
678
A
HOH
679
4
HOH
HOH
679
A
HOH
680
4
HOH
HOH
680
A
HOH
681
4
HOH
HOH
681
A
HOH
682
4
HOH
HOH
682
A
HOH
683
4
HOH
HOH
683
A
HOH
685
4
HOH
HOH
685
A
HOH
686
4
HOH
HOH
686
A
HOH
687
4
HOH
HOH
687
A
HOH
688
4
HOH
HOH
688
A
HOH
689
4
HOH
HOH
689
A
HOH
690
4
HOH
HOH
690
A
HOH
691
4
HOH
HOH
691
A
HOH
692
4
HOH
HOH
692
A
HOH
693
4
HOH
HOH
693
A
HOH
695
4
HOH
HOH
695
A
HOH
696
4
HOH
HOH
696
A
HOH
697
4
HOH
HOH
697
A
HOH
698
4
HOH
HOH
698
A
HOH
699
4
HOH
HOH
699
A
HOH
700
4
HOH
HOH
700
A
HOH
702
4
HOH
HOH
702
A
HOH
703
4
HOH
HOH
703
A
HOH
704
4
HOH
HOH
704
A
HOH
705
4
HOH
HOH
705
A
HOH
706
4
HOH
HOH
706
A
HOH
707
4
HOH
HOH
707
A
HOH
708
4
HOH
HOH
708
A
HOH
710
4
HOH
HOH
710
A
HOH
711
4
HOH
HOH
711
A
HOH
712
4
HOH
HOH
712
A
HOH
713
4
HOH
HOH
713
A
HOH
715
4
HOH
HOH
715
A
HOH
716
4
HOH
HOH
716
A
HOH
717
4
HOH
HOH
717
A
HOH
718
4
HOH
HOH
718
A
HOH
719
4
HOH
HOH
719
A
HOH
720
4
HOH
HOH
720
A
HOH
723
4
HOH
HOH
723
A
HOH
724
4
HOH
HOH
724
A
HOH
726
4
HOH
HOH
726
A
HOH
727
4
HOH
HOH
727
A
HOH
728
4
HOH
HOH
728
A
HOH
729
4
HOH
HOH
729
A
HOH
730
4
HOH
HOH
730
A
HOH
731
4
HOH
HOH
731
A
HOH
732
4
HOH
HOH
732
A
HOH
733
4
HOH
HOH
733
A
HOH
734
4
HOH
HOH
734
A
HOH
736
4
HOH
HOH
736
A
HOH
738
4
HOH
HOH
738
A
HOH
739
4
HOH
HOH
739
A
HOH
740
4
HOH
HOH
740
A
HOH
741
4
HOH
HOH
741
A
HOH
742
4
HOH
HOH
742
A
HOH
743
4
HOH
HOH
743
A
HOH
744
4
HOH
HOH
744
A
HOH
747
4
HOH
HOH
747
A
HOH
748
4
HOH
HOH
748
A
HOH
749
4
HOH
HOH
749
A
HOH
753
4
HOH
HOH
753
A
HOH
755
4
HOH
HOH
755
A
HOH
756
4
HOH
HOH
756
A
HOH
757
4
HOH
HOH
757
A
HOH
758
4
HOH
HOH
758
A
HOH
759
4
HOH
HOH
759
A
GUA
401
n
1
G
401
B
GUA
402
n
2
G
402
B
CYT
403
n
3
C
403
B
ADE
404
n
4
A
404
B
ADE
405
n
5
A
405
B
CYT
406
n
6
C
406
B
GUA
407
n
7
G
407
B
GUA
408
n
8
G
408
B
URI
409
n
9
U
409
B
FHP
410
n
10
FHU
410
B
CYT
411
n
11
C
411
B
GUA
412
n
12
G
412
B
ADE
413
n
13
A
413
B
URI
414
n
14
U
414
B
CYT
415
n
15
C
415
B
CYT
416
n
16
C
416
B
CYT
417
n
17
C
417
B
GUA
418
n
18
G
418
B
URI
419
n
19
U
419
B
URI
420
n
20
U
420
B
GUA
421
n
21
G
421
B
CYT
422
n
22
C
422
B
n
1
-12
A
n
2
-11
A
n
3
-10
A
n
4
-9
A
n
5
-8
A
n
6
-7
A
n
7
-6
A
n
8
-5
A
n
9
-4
A
n
10
-3
A
n
11
-2
A
n
12
-1
A
n
13
0
A
n
14
1
A
n
15
2
A
n
16
3
A
n
17
4
A
n
18
5
A
n
19
6
A
n
20
7
A
n
21
8
A
MET
9
n
22
MET
9
A
ASP
10
n
23
ASP
10
A
ILE
11
n
24
ILE
11
A
ASN
12
n
25
ASN
12
A
GLY
13
n
26
GLY
13
A
VAL
14
n
27
VAL
14
A
LEU
15
n
28
LEU
15
A
LEU
16
n
29
LEU
16
A
LEU
17
n
30
LEU
17
A
ASP
18
n
31
ASP
18
A
LYS
19
n
32
LYS
19
A
PRO
20
n
33
PRO
20
A
GLN
21
n
34
GLN
21
A
GLY
22
n
35
GLY
22
A
MET
23
n
36
MET
23
A
SER
24
n
37
SER
24
A
SER
25
n
38
SER
25
A
ASN
26
n
39
ASN
26
A
ASP
27
n
40
ASP
27
A
ALA
28
n
41
ALA
28
A
LEU
29
n
42
LEU
29
A
GLN
30
n
43
GLN
30
A
LYS
31
n
44
LYS
31
A
VAL
32
n
45
VAL
32
A
LYS
33
n
46
LYS
33
A
ARG
34
n
47
ARG
34
A
ILE
35
n
48
ILE
35
A
TYR
36
n
49
TYR
36
A
ASN
37
n
50
ASN
37
A
ALA
38
n
51
ALA
38
A
ASN
39
n
52
ASN
39
A
ARG
40
n
53
ARG
40
A
ALA
41
n
54
ALA
41
A
GLY
42
n
55
GLY
42
A
HIS
43
n
56
HIS
43
A
THR
44
n
57
THR
44
A
GLY
45
n
58
GLY
45
A
ALA
46
n
59
ALA
46
A
LEU
47
n
60
LEU
47
A
ASP
48
n
61
ASP
48
A
PRO
49
n
62
PRO
49
A
LEU
50
n
63
LEU
50
A
ALA
51
n
64
ALA
51
A
THR
52
n
65
THR
52
A
GLY
53
n
66
GLY
53
A
MET
54
n
67
MET
54
A
LEU
55
n
68
LEU
55
A
PRO
56
n
69
PRO
56
A
ILE
57
n
70
ILE
57
A
CYS
58
n
71
CYS
58
A
LEU
59
n
72
LEU
59
A
GLY
60
n
73
GLY
60
A
GLU
61
n
74
GLU
61
A
ALA
62
n
75
ALA
62
A
THR
63
n
76
THR
63
A
LYS
64
n
77
LYS
64
A
PHE
65
n
78
PHE
65
A
SER
66
n
79
SER
66
A
GLN
67
n
80
GLN
67
A
TYR
68
n
81
TYR
68
A
LEU
69
n
82
LEU
69
A
LEU
70
n
83
LEU
70
A
ASP
71
n
84
ASP
71
A
SER
72
n
85
SER
72
A
ASP
73
n
86
ASP
73
A
LYS
74
n
87
LYS
74
A
ARG
75
n
88
ARG
75
A
TYR
76
n
89
TYR
76
A
ARG
77
n
90
ARG
77
A
VAL
78
n
91
VAL
78
A
ILE
79
n
92
ILE
79
A
ALA
80
n
93
ALA
80
A
ARG
81
n
94
ARG
81
A
LEU
82
n
95
LEU
82
A
GLY
83
n
96
GLY
83
A
GLN
84
n
97
GLN
84
A
ARG
85
n
98
ARG
85
A
THR
86
n
99
THR
86
A
ASP
87
n
100
ASP
87
A
THR
88
n
101
THR
88
A
SER
89
n
102
SER
89
A
ASP
90
n
103
ASP
90
A
ALA
91
n
104
ALA
91
A
ASP
92
n
105
ASP
92
A
GLY
93
n
106
GLY
93
A
GLN
94
n
107
GLN
94
A
ILE
95
n
108
ILE
95
A
VAL
96
n
109
VAL
96
A
GLU
97
n
110
GLU
97
A
GLU
98
n
111
GLU
98
A
ARG
99
n
112
ARG
99
A
PRO
100
n
113
PRO
100
A
VAL
101
n
114
VAL
101
A
THR
102
n
115
THR
102
A
PHE
103
n
116
PHE
103
A
SER
104
n
117
SER
104
A
ALA
105
n
118
ALA
105
A
GLU
106
n
119
GLU
106
A
GLN
107
n
120
GLN
107
A
LEU
108
n
121
LEU
108
A
ALA
109
n
122
ALA
109
A
ALA
110
n
123
ALA
110
A
ALA
111
n
124
ALA
111
A
LEU
112
n
125
LEU
112
A
ASP
113
n
126
ASP
113
A
THR
114
n
127
THR
114
A
PHE
115
n
128
PHE
115
A
ARG
116
n
129
ARG
116
A
GLY
117
n
130
GLY
117
A
ASP
118
n
131
ASP
118
A
ILE
119
n
132
ILE
119
A
GLU
120
n
133
GLU
120
A
GLN
121
n
134
GLN
121
A
ILE
122
n
135
ILE
122
A
PRO
123
n
136
PRO
123
A
SER
124
n
137
SER
124
A
MET
125
n
138
MET
125
A
TYR
126
n
139
TYR
126
A
SER
127
n
140
SER
127
A
ALA
128
n
141
ALA
128
A
LEU
129
n
142
LEU
129
A
LYS
130
n
143
LYS
130
A
TYR
131
n
144
TYR
131
A
GLN
132
n
145
GLN
132
A
GLY
133
n
146
GLY
133
A
LYS
134
n
147
LYS
134
A
LYS
135
n
148
LYS
135
A
LEU
136
n
149
LEU
136
A
TYR
137
n
150
TYR
137
A
GLU
138
n
151
GLU
138
A
TYR
139
n
152
TYR
139
A
ALA
140
n
153
ALA
140
A
ARG
141
n
154
ARG
141
A
GLN
142
n
155
GLN
142
A
GLY
143
n
156
GLY
143
A
ILE
144
n
157
ILE
144
A
GLU
145
n
158
GLU
145
A
VAL
146
n
159
VAL
146
A
PRO
147
n
160
PRO
147
A
ARG
148
n
161
ARG
148
A
GLU
149
n
162
GLU
149
A
ALA
150
n
163
ALA
150
A
ARG
151
n
164
ARG
151
A
PRO
152
n
165
PRO
152
A
ILE
153
n
166
ILE
153
A
THR
154
n
167
THR
154
A
VAL
155
n
168
VAL
155
A
TYR
156
n
169
TYR
156
A
GLU
157
n
170
GLU
157
A
LEU
158
n
171
LEU
158
A
LEU
159
n
172
LEU
159
A
PHE
160
n
173
PHE
160
A
ILE
161
n
174
ILE
161
A
ARG
162
n
175
ARG
162
A
HIS
163
n
176
HIS
163
A
GLU
164
n
177
GLU
164
A
GLY
165
n
178
GLY
165
A
ASN
166
n
179
ASN
166
A
GLU
167
n
180
GLU
167
A
LEU
168
n
181
LEU
168
A
GLU
169
n
182
GLU
169
A
LEU
170
n
183
LEU
170
A
GLU
171
n
184
GLU
171
A
ILE
172
n
185
ILE
172
A
HIS
173
n
186
HIS
173
A
CYS
174
n
187
CYS
174
A
SER
175
n
188
SER
175
A
LYS
176
n
189
LYS
176
A
GLY
177
n
190
GLY
177
A
THR
178
n
191
THR
178
A
TYR
179
n
192
TYR
179
A
ILE
180
n
193
ILE
180
A
ARG
181
n
194
ARG
181
A
THR
182
n
195
THR
182
A
ILE
183
n
196
ILE
183
A
ILE
184
n
197
ILE
184
A
ASP
185
n
198
ASP
185
A
ASP
186
n
199
ASP
186
A
LEU
187
n
200
LEU
187
A
GLY
188
n
201
GLY
188
A
GLU
189
n
202
GLU
189
A
LYS
190
n
203
LYS
190
A
LEU
191
n
204
LEU
191
A
GLY
192
n
205
GLY
192
A
CYS
193
n
206
CYS
193
A
GLY
194
n
207
GLY
194
A
ALA
195
n
208
ALA
195
A
HIS
196
n
209
HIS
196
A
VAL
197
n
210
VAL
197
A
ILE
198
n
211
ILE
198
A
TYR
199
n
212
TYR
199
A
LEU
200
n
213
LEU
200
A
ARG
201
n
214
ARG
201
A
ARG
202
n
215
ARG
202
A
LEU
203
n
216
LEU
203
A
ALA
204
n
217
ALA
204
A
VAL
205
n
218
VAL
205
A
SER
206
n
219
SER
206
A
LYS
207
n
220
LYS
207
A
TYR
208
n
221
TYR
208
A
PRO
209
n
222
PRO
209
A
VAL
210
n
223
VAL
210
A
GLU
211
n
224
GLU
211
A
ARG
212
n
225
ARG
212
A
MET
213
n
226
MET
213
A
VAL
214
n
227
VAL
214
A
THR
215
n
228
THR
215
A
LEU
216
n
229
LEU
216
A
GLU
217
n
230
GLU
217
A
HIS
218
n
231
HIS
218
A
LEU
219
n
232
LEU
219
A
ARG
220
n
233
ARG
220
A
GLU
221
n
234
GLU
221
A
LEU
222
n
235
LEU
222
A
VAL
223
n
236
VAL
223
A
GLU
224
n
237
GLU
224
A
GLN
225
n
238
GLN
225
A
ALA
226
n
239
ALA
226
A
GLU
227
n
240
GLU
227
A
GLN
228
n
241
GLN
228
A
GLN
229
n
242
GLN
229
A
ASP
230
n
243
ASP
230
A
ILE
231
n
244
ILE
231
A
PRO
232
n
245
PRO
232
A
ALA
233
n
246
ALA
233
A
ALA
234
n
247
ALA
234
A
GLU
235
n
248
GLU
235
A
LEU
236
n
249
LEU
236
A
LEU
237
n
250
LEU
237
A
ASP
238
n
251
ASP
238
A
PRO
239
n
252
PRO
239
A
LEU
240
n
253
LEU
240
A
LEU
241
n
254
LEU
241
A
MET
242
n
255
MET
242
A
PRO
243
n
256
PRO
243
A
MET
244
n
257
MET
244
A
ASP
245
n
258
ASP
245
A
SER
246
n
259
SER
246
A
PRO
247
n
260
PRO
247
A
ALA
248
n
261
ALA
248
A
SER
249
n
262
SER
249
A
ASP
250
n
263
ASP
250
A
TYR
251
n
264
TYR
251
A
PRO
252
n
265
PRO
252
A
VAL
253
n
266
VAL
253
A
VAL
254
n
267
VAL
254
A
ASN
255
n
268
ASN
255
A
LEU
256
n
269
LEU
256
A
PRO
257
n
270
PRO
257
A
LEU
258
n
271
LEU
258
A
THR
259
n
272
THR
259
A
SER
260
n
273
SER
260
A
SER
261
n
274
SER
261
A
VAL
262
n
275
VAL
262
A
TYR
263
n
276
TYR
263
A
PHE
264
n
277
PHE
264
A
LYS
265
n
278
LYS
265
A
ASN
266
n
279
ASN
266
A
GLY
267
n
280
GLY
267
A
ASN
268
n
281
ASN
268
A
PRO
269
n
282
PRO
269
A
VAL
270
n
283
VAL
270
A
ARG
271
n
284
ARG
271
A
THR
272
n
285
THR
272
A
SER
273
n
286
SER
273
A
GLY
274
n
287
GLY
274
A
ALA
275
n
288
ALA
275
A
PRO
276
n
289
PRO
276
A
LEU
277
n
290
LEU
277
A
GLU
278
n
291
GLU
278
A
GLY
279
n
292
GLY
279
A
LEU
280
n
293
LEU
280
A
VAL
281
n
294
VAL
281
A
ARG
282
n
295
ARG
282
A
VAL
283
n
296
VAL
283
A
THR
284
n
297
THR
284
A
GLU
285
n
298
GLU
285
A
GLY
286
n
299
GLY
286
A
GLU
287
n
300
GLU
287
A
ASN
288
n
301
ASN
288
A
GLY
289
n
302
GLY
289
A
LYS
290
n
303
LYS
290
A
PHE
291
n
304
PHE
291
A
ILE
292
n
305
ILE
292
A
GLY
293
n
306
GLY
293
A
MET
294
n
307
MET
294
A
GLY
295
n
308
GLY
295
A
GLU
296
n
309
GLU
296
A
ILE
297
n
310
ILE
297
A
ASP
298
n
311
ASP
298
A
ASP
299
n
312
ASP
299
A
GLU
300
n
313
GLU
300
A
GLY
301
n
314
GLY
301
A
ARG
302
n
315
ARG
302
A
VAL
303
n
316
VAL
303
A
ALA
304
n
317
ALA
304
A
PRO
305
n
318
PRO
305
A
ARG
306
n
319
ARG
306
A
ARG
307
n
320
ARG
307
A
LEU
308
n
321
LEU
308
A
VAL
309
n
322
VAL
309
A
VAL
310
n
323
VAL
310
A
GLU
311
n
324
GLU
311
A
TYR
312
n
325
TYR
312
A
n
326
313
A
n
327
314
A
author_defined_assembly
2
dimeric
B
FHU
410
A
FHU
10
U
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
121
B
N
GLN
134
A
O
ARG
151
B
O
ARG
164
A
N
LEU
159
B
N
LEU
172
A
O
GLU
171
B
O
GLU
184
A
O
LEU
168
B
O
LEU
181
A
N
ALA
80
B
N
ALA
93
A
N
ARG
81
B
N
ARG
94
A
O
HIS
196
B
O
HIS
209
A
O
ARG
202
B
O
ARG
215
A
N
THR
52
B
N
THR
65
A
O
LEU
59
B
O
LEU
72
A
N
GLY
13
B
N
GLY
26
A
N
ASP
18
B
N
ASP
31
A
O
VAL
214
B
O
VAL
227
A
N
GLN
121
B
N
GLN
134
A
O
ARG
151
B
O
ARG
164
A
N
LEU
159
B
N
LEU
172
A
O
GLU
171
B
O
GLU
184
A
O
LEU
168
B
O
LEU
181
A
N
ALA
80
B
N
ALA
93
A
N
ARG
81
B
N
ARG
94
A
O
HIS
196
B
O
HIS
209
A
O
ARG
202
B
O
ARG
215
A
N
THR
52
B
N
THR
65
A
O
CYS
58
B
O
CYS
71
A
N
GLY
42
B
N
GLY
55
A
N
ARG
85
B
N
ARG
98
A
O
VAL
96
B
O
VAL
109
A
N
TYR
131
B
N
TYR
144
A
O
LYS
134
B
O
LYS
147
A
N
VAL
254
B
N
VAL
267
A
O
ARG
282
B
O
ARG
295
A
N
VAL
281
B
N
VAL
294
A
O
GLY
295
B
O
GLY
308
A
N
MET
294
B
N
MET
307
A
O
ARG
307
B
O
ARG
320
1
A
CG
MET
9
B
CG
MET
22
1
Y
1
A
SD
MET
9
B
SD
MET
22
1
Y
1
A
CE
MET
9
B
CE
MET
22
1
Y
1
A
CG
ASP
10
B
CG
ASP
23
1
Y
1
A
OD1
ASP
10
B
OD1
ASP
23
1
Y
1
A
OD2
ASP
10
B
OD2
ASP
23
1
Y
1
A
CG
ASN
39
B
CG
ASN
52
1
Y
1
A
OD1
ASN
39
B
OD1
ASN
52
1
Y
1
A
ND2
ASN
39
B
ND2
ASN
52
1
Y
1
A
CD
GLN
94
B
CD
GLN
107
1
Y
1
A
OE1
GLN
94
B
OE1
GLN
107
1
Y
1
A
NE2
GLN
94
B
NE2
GLN
107
1
Y
1
A
CD
GLU
106
B
CD
GLU
119
1
Y
1
A
OE1
GLU
106
B
OE1
GLU
119
1
Y
1
A
OE2
GLU
106
B
OE2
GLU
119
1
Y
1
A
CD
GLN
132
B
CD
GLN
145
1
Y
1
A
OE1
GLN
132
B
OE1
GLN
145
1
Y
1
A
NE2
GLN
132
B
NE2
GLN
145
1
Y
1
A
CE
LYS
207
B
CE
LYS
220
1
Y
1
A
NZ
LYS
207
B
NZ
LYS
220
1
Y
1
A
CD
GLU
227
B
CD
GLU
240
1
Y
1
A
OE1
GLU
227
B
OE1
GLU
240
1
Y
1
A
OE2
GLU
227
B
OE2
GLU
240
1
Y
1
A
OE1
GLU
287
B
OE1
GLU
300
1
Y
1
A
OE2
GLU
287
B
OE2
GLU
300
1
Y
1
A
CG
ASN
288
B
CG
ASN
301
1
Y
1
A
OD1
ASN
288
B
OD1
ASN
301
1
Y
1
A
ND2
ASN
288
B
ND2
ASN
301
1
Y
1
A
CZ
ARG
306
B
CZ
ARG
319
1
Y
1
A
NH1
ARG
306
B
NH1
ARG
319
1
Y
1
A
NH2
ARG
306
B
NH2
ARG
319
1
Y
1
A
C
TYR
312
B
C
TYR
325
1
Y
1
A
O
TYR
312
B
O
TYR
325
1
Y
1
A
CB
TYR
312
B
CB
TYR
325
1
Y
1
A
CG
TYR
312
B
CG
TYR
325
1
Y
1
A
CD1
TYR
312
B
CD1
TYR
325
1
Y
1
A
CD2
TYR
312
B
CD2
TYR
325
1
Y
1
A
CE1
TYR
312
B
CE1
TYR
325
1
Y
1
A
CE2
TYR
312
B
CE2
TYR
325
1
Y
1
A
CZ
TYR
312
B
CZ
TYR
325
1
Y
1
A
OH
TYR
312
B
OH
TYR
325
1
Y
1
A
MET
-12
B
MET
1
1
Y
1
A
GLY
-11
B
GLY
2
1
Y
1
A
HIS
-10
B
HIS
3
1
Y
1
A
HIS
-9
B
HIS
4
1
Y
1
A
HIS
-8
B
HIS
5
1
Y
1
A
HIS
-7
B
HIS
6
1
Y
1
A
HIS
-6
B
HIS
7
1
Y
1
A
HIS
-5
B
HIS
8
1
Y
1
A
HIS
-4
B
HIS
9
1
Y
1
A
HIS
-3
B
HIS
10
1
Y
1
A
HIS
-2
B
HIS
11
1
Y
1
A
HIS
-1
B
HIS
12
1
Y
1
A
SER
0
B
SER
13
1
Y
1
A
SER
1
B
SER
14
1
Y
1
A
GLY
2
B
GLY
15
1
Y
1
A
HIS
3
B
HIS
16
1
Y
1
A
ILE
4
B
ILE
17
1
Y
1
A
GLU
5
B
GLU
18
1
Y
1
A
GLY
6
B
GLY
19
1
Y
1
A
ARG
7
B
ARG
20
1
Y
1
A
HIS
8
B
HIS
21
1
Y
1
A
PRO
313
B
PRO
326
1
Y
1
A
ALA
314
B
ALA
327
1
Y
1
B
U
409
0.062
SIDE CHAIN
1
5.56
0.70
108.50
114.06
B
B
B
O4'
C1'
N1
U
U
U
409
409
409
N
1
B
B
O6
O6
G
G
401
401
1.60
1_555
2_556
1
B
B
O
O
HOH
HOH
754
754
1.74
1_555
2_556
1
A
SER
206
52.89
-137.99
1
A
SER
273
-55.77
-79.20
1
A
GLU
278
-171.35
-177.66
1
A
GLU
300
-65.01
4.65
PROTEIN_REP.PARAM
PROTEIN.TOP
DNA-RNA-FHP_REP.PARAM
DNA-RNA-FHP.TOP
ION.PARAM
ION.TOP
WATER_REP.PARAM
WATER.TOP
28.1
-4.09
0.00
0.08
5.58
0.00
-1.49
0.2110000
0.004
0.1840000
0.1840000
0.1840000
1.85
28.27
3444
34482
34482
10.0
94.3
RANDOM
562571.39
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MAD
Engh & Huber
FLAT MODEL
51.2832
0.373386
0.22
0.19
5.00
0.18
0.14
1.85
28.27
259
3166
50
466
2391
0.006
1.3
23.6
1.65
1.69
1.50
2.43
2.00
2.52
2.00
3.60
2.50
0.2870000
0.013
0.2360000
1.97
526
4732
6
10.0
87.2
25.3
1.85
30
1K8W
35366
35366
0
0
1,2
96.8
1.85
1.92
94.3
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
Crystal structure of the E. coli pseudouridine synthase TruB bound to a T stem-loop RNA
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
The T stem-loop RNA used in crystallization
contains all the structural determinants
employed by TruB in modifying intact tRNA
A
SER
24
B
SER
37
HELX_P
A
TYR
36
B
TYR
49
1
1
13
A
GLU
61
B
GLU
74
HELX_P
A
PHE
65
B
PHE
78
5
2
5
A
SER
66
B
SER
79
HELX_P
A
ASP
71
B
ASP
84
1
3
6
A
SER
104
B
SER
117
HELX_P
A
THR
114
B
THR
127
1
4
11
A
LEU
136
B
LEU
149
HELX_P
A
GLN
142
B
GLN
155
1
5
7
A
TYR
179
B
TYR
192
HELX_P
A
LEU
191
B
LEU
204
1
6
13
A
PRO
209
B
PRO
222
HELX_P
A
MET
213
B
MET
226
5
7
5
A
LEU
216
B
LEU
229
HELX_P
A
GLN
229
B
GLN
242
1
8
14
A
ALA
233
B
ALA
246
HELX_P
A
ASP
238
B
ASP
251
1
9
6
A
PRO
239
B
PRO
252
HELX_P
A
LEU
241
B
LEU
254
5
10
3
A
ASP
245
B
ASP
258
HELX_P
A
SER
249
B
SER
262
5
11
5
A
PRO
257
B
PRO
270
HELX_P
A
LYS
265
B
LYS
278
1
12
9
covale
1.600
both
B
U
409
A
O3'
U
9
1_555
B
FHU
410
A
P
FHU
10
1_555
covale
1.600
both
B
FHU
410
A
O3'
FHU
10
1_555
B
C
411
A
P
C
11
1_555
hydrog
WATSON-CRICK
B
G
402
A
N1
G
2
1_555
B
C
422
A
N3
C
22
1_555
hydrog
WATSON-CRICK
B
G
402
A
N2
G
2
1_555
B
C
422
A
O2
C
22
1_555
hydrog
WATSON-CRICK
B
G
402
A
O6
G
2
1_555
B
C
422
A
N4
C
22
1_555
hydrog
WATSON-CRICK
B
C
403
A
N3
C
3
1_555
B
G
421
A
N1
G
21
1_555
hydrog
WATSON-CRICK
B
C
403
A
N4
C
3
1_555
B
G
421
A
O6
G
21
1_555
hydrog
WATSON-CRICK
B
C
403
A
O2
C
3
1_555
B
G
421
A
N2
G
21
1_555
hydrog
WATSON-CRICK
B
A
404
A
N1
A
4
1_555
B
U
420
A
N3
U
20
1_555
hydrog
WATSON-CRICK
B
A
404
A
N6
A
4
1_555
B
U
420
A
O4
U
20
1_555
hydrog
WATSON-CRICK
B
A
405
A
N1
A
5
1_555
B
U
419
A
N3
U
19
1_555
hydrog
WATSON-CRICK
B
A
405
A
N6
A
5
1_555
B
U
419
A
O4
U
19
1_555
hydrog
WATSON-CRICK
B
C
406
A
N3
C
6
1_555
B
G
418
A
N1
G
18
1_555
hydrog
WATSON-CRICK
B
C
406
A
N4
C
6
1_555
B
G
418
A
O6
G
18
1_555
hydrog
WATSON-CRICK
B
C
406
A
O2
C
6
1_555
B
G
418
A
N2
G
18
1_555
hydrog
WATSON-CRICK
B
G
407
A
N1
G
7
1_555
B
C
417
A
N3
C
17
1_555
hydrog
WATSON-CRICK
B
G
407
A
N2
G
7
1_555
B
C
417
A
O2
C
17
1_555
hydrog
WATSON-CRICK
B
G
407
A
O6
G
7
1_555
B
C
417
A
N4
C
17
1_555
hydrog
WATSON-CRICK
B
G
408
A
N1
G
8
1_555
B
C
416
A
N3
C
16
1_555
hydrog
WATSON-CRICK
B
G
408
A
N2
G
8
1_555
B
C
416
A
O2
C
16
1_555
hydrog
WATSON-CRICK
B
G
408
A
O6
G
8
1_555
B
C
416
A
N4
C
16
1_555
hydrog
REVERSED HOOGSTEEN
B
U
409
A
N3
U
9
1_555
B
A
413
A
N7
A
13
1_555
hydrog
REVERSED HOOGSTEEN
B
U
409
A
O2
U
9
1_555
B
A
413
A
N6
A
13
1_555
LYASE/RNA
protein-RNA complex, T stem-loop, tRNA, LYASE-RNA COMPLEX
TRUB_ECOLI
UNP
2
10
P60340
DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTS
DADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE
LEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS
DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA
1K8W
PDB
1
1K8W
10
314
1K8W
10
314
P60340
A
1
23
327
401
422
1K8W
401
422
1K8W
B
2
1
22
8
7
2
2
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLY
117
B
GLY
130
A
GLN
121
B
GLN
134
A
ARG
151
B
ARG
164
A
GLU
164
B
GLU
177
A
GLU
167
B
GLU
180
A
CYS
174
B
CYS
187
A
LYS
74
B
LYS
87
A
LEU
82
B
LEU
95
A
ALA
195
B
ALA
208
A
VAL
205
B
VAL
218
A
THR
52
B
THR
65
A
LEU
59
B
LEU
72
A
GLY
13
B
GLY
26
A
LYS
19
B
LYS
32
A
VAL
214
B
VAL
227
A
THR
215
B
THR
228
A
GLY
117
B
GLY
130
A
GLN
121
B
GLN
134
A
ARG
151
B
ARG
164
A
GLU
164
B
GLU
177
A
GLU
167
B
GLU
180
A
CYS
174
B
CYS
187
A
LYS
74
B
LYS
87
A
LEU
82
B
LEU
95
A
ALA
195
B
ALA
208
A
VAL
205
B
VAL
218
A
THR
52
B
THR
65
A
LEU
59
B
LEU
72
A
ALA
41
B
ALA
54
A
HIS
43
B
HIS
56
A
GLN
84
B
GLN
97
A
THR
86
B
THR
99
A
ILE
95
B
ILE
108
A
GLU
98
B
GLU
111
A
LYS
130
B
LYS
143
A
TYR
131
B
TYR
144
A
LYS
134
B
LYS
147
A
LYS
135
B
LYS
148
A
VAL
253
B
VAL
266
A
LEU
256
B
LEU
269
A
LEU
280
B
LEU
293
A
GLU
285
B
GLU
298
A
LYS
290
B
LYS
303
A
ILE
297
B
ILE
310
A
VAL
303
B
VAL
316
A
LEU
308
B
LEU
321
BINDING SITE FOR RESIDUE SO4 A 901
A
SO4
901
Software
5
BINDING SITE FOR RESIDUE SO4 A 902
A
SO4
902
Software
3
BINDING SITE FOR RESIDUE SO4 A 903
A
SO4
903
Software
3
BINDING SITE FOR RESIDUE SO4 A 904
A
SO4
904
Software
3
BINDING SITE FOR RESIDUE SO4 A 905
A
SO4
905
Software
3
BINDING SITE FOR RESIDUE SO4 A 906
A
SO4
906
Software
4
BINDING SITE FOR RESIDUE SO4 B 907
B
SO4
907
Software
3
BINDING SITE FOR RESIDUE SO4 A 908
A
SO4
908
Software
6
BINDING SITE FOR RESIDUE SO4 A 909
A
SO4
909
Software
6
BINDING SITE FOR RESIDUE SO4 A 910
A
SO4
910
Software
5
A
LYS
31
B
LYS
44
5
1_555
A
ARG
34
B
ARG
47
5
1_555
A
ARG
220
B
ARG
233
5
1_555
A
HOH
562
N
HOH
5
1_555
A
SO4
902
E
SO4
5
1_555
A
LYS
31
B
LYS
44
3
1_555
A
ARG
220
B
ARG
233
3
1_555
A
SO4
901
D
SO4
3
1_555
A
PRO
257
B
PRO
270
3
1_555
A
THR
272
B
THR
285
3
1_555
A
SER
273
B
SER
286
3
1_555
A
ARG
81
B
ARG
94
3
1_555
A
HOH
652
N
HOH
3
1_555
A
HOH
679
N
HOH
3
1_555
A
ARG
271
B
ARG
284
3
1_555
A
ARG
302
B
ARG
315
3
1_555
A
HOH
680
N
HOH
3
1_555
A
THR
102
B
THR
115
4
4_546
A
GLN
132
B
GLN
145
4
1_555
A
GLY
192
B
GLY
205
4
4_546
B
C
406
A
C
6
4
1_555
A
PRO
49
B
PRO
62
3
1_555
A
ASP
113
B
ASP
126
3
1_545
B
G
412
A
G
12
3
1_555
A
ARG
77
B
ARG
90
6
1_555
A
TYR
199
B
TYR
212
6
1_555
A
LEU
203
B
LEU
216
6
1_555
A
GLN
225
B
GLN
238
6
4_557
A
GLN
228
B
GLN
241
6
4_557
A
GLN
229
B
GLN
242
6
4_557
A
ARG
85
B
ARG
98
6
1_555
A
GLU
97
B
GLU
110
6
1_555
A
LYS
134
B
LYS
147
6
4_556
A
GLU
138
B
GLU
151
6
4_556
A
GLN
142
B
GLN
155
6
4_556
A
HOH
742
N
HOH
6
1_555
A
LEU
258
B
LEU
271
5
1_555
A
SER
261
B
SER
274
5
1_555
A
VAL
262
B
VAL
275
5
1_555
A
LYS
265
B
LYS
278
5
1_555
A
GLU
285
B
GLU
298
5
1_555
5
C 1 2 1