0.006894 0.000000 0.002591 0.000000 0.024776 0.000000 0.000000 0.000000 0.013699 0.00000 0.00000 0.00000 Hoang, C. Ferre-D'Amare, A.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 110.60 90.00 145.054 40.361 77.987 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C9 H14 F N2 O10 P 360.187 n (5S,6R)-5-FLUORO-6-HYDROXY-PSEUDOURIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 R C N 148 N C N 149 N O N 150 N C N 151 N S N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N N N 161 N C N 162 N N N 163 N C N 164 S C N 165 R C N 166 N O N 167 N O N 168 R C N 169 R C N 170 N O N 171 S C N 172 R C N 173 N O N 174 N O N 175 N C N 176 N O N 177 N P N 178 N O N 179 N O N 180 N O N 181 N F N 182 N O N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N O N 198 N P N 199 N O N 200 N O N 201 N O N 202 N C N 203 R C N 204 N O N 205 S C N 206 N O N 207 R C N 208 N O N 209 R C Y 210 N N Y 211 N C Y 212 N N Y 213 N C N 214 N C N 215 N O N 216 N N N 217 N C N 218 N N N 219 N N Y 220 N C N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N N N 236 S C N 237 N C N 238 N O N 239 N C N 240 N C N 241 N C N 242 N O N 243 N N N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N N N 256 S C N 257 N C N 258 N O N 259 N C N 260 N C N 261 N C N 262 N O N 263 N O N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 N C N 276 N C N 277 N O N 278 N O N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C Y 289 N C Y 290 N N Y 291 N C Y 292 N C Y 293 N N N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N O N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 S C N 313 N C N 314 N C N 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N N N 331 S C N 332 N C N 333 N O N 334 N C N 335 N C N 336 N C N 337 N C N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C N 357 N C N 358 N C N 359 N C N 360 N N N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C N 382 N C N 383 N S N 384 N C N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C N 425 N C N 426 N C N 427 N O N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N N N 438 S C N 439 N C N 440 N O N 441 N C N 442 N O N 443 N O N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N S N 452 N O N 453 N O N 454 N O N 455 N O N 456 N N N 457 S C N 458 N C N 459 N O N 460 R C N 461 N O N 462 N C N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N N N 474 S C N 475 N C N 476 N O N 477 N C Y 478 N C Y 479 N C Y 480 N C Y 481 N C Y 482 N C Y 483 N C N 484 N O N 485 N O N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N O N 498 N P N 499 N O N 500 N O N 501 N O N 502 N C N 503 R C N 504 N O N 505 S C N 506 N O N 507 R C N 508 N O N 509 R C N 510 N N N 511 N C N 512 N O N 513 N N N 514 N C N 515 N O N 516 N C N 517 N C N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N N N 532 S C N 533 N C N 534 N O N 535 N C N 536 N C N 537 N C N 538 N O N 539 N H N 540 N H N 541 N H N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing Y 220 N sing Y 221 N sing Y 222 N doub N 223 N sing Y 224 N sing N 225 N sing Y 226 N doub N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N doub N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N doub N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing Y 293 N sing Y 294 N doub Y 295 N doub N 296 N sing Y 297 N sing N 298 N sing Y 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing Y 401 N doub Y 402 N sing Y 403 N sing N 404 N sing Y 405 N doub N 406 N sing Y 407 N doub N 408 N sing Y 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N doub N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N doub N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N doub N 444 N doub N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N doub N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N doub N 470 N sing N 471 N sing N 472 N sing N 473 N sing Y 474 N doub Y 475 N sing Y 476 N sing N 477 N sing Y 478 N doub N 479 N sing Y 480 N doub N 481 N sing Y 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N doub N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N doub N 514 N sing N 515 N sing N 516 N sing N 517 N doub N 518 N sing N 519 N doub N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N doub N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 107 929 939 10.1016/S0092-8674(01)00618-3 11779468 Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme. 2001 10.2210/pdb1k8w/pdb pdb_00001k8w 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 100 1 monochromator CCD 2001-06-07 ADSC QUANTUM 4 osmic confocal IMAGE PLATE 2001-07-04 RIGAKU RAXIS IIC double crystal MAD M x-ray 1 osmic confocal mirror SINGLE WAVELENGTH M x-ray 1 0.9611 1.0 0.9792 1.0 0.9794 1.0 1.5418 1.0 5.0.2 ALS 0.9611, 0.9792, 0.9794 SYNCHROTRON ALS BEAMLINE 5.0.2 1.5418 ROTATING ANODE RIGAKU RU200 T stem-loop RNA 7062.208 5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*UP*(FHU)P*CP*GP*AP*UP*CP*CP*CP*GP*UP*UP*GP*C)-3' 1 syn polymer 36638.551 tRNA Pseudouridine Synthase B 4.2.1.70 Residues 10-314 Residues 1-9 replaced with a His-Tag 1 man polymer 96.063 SULFATE ION 10 syn non-polymer 18.015 water 259 nat water TruB Pseudouridine Synthase, tRNA Pseudouridine 55 Synthase, Pseudouridylate synthase no yes GGCAACGGU(FHU)CGAUCCCGUUGC GGCAACGGUUCGAUCCCGUUGC B polyribonucleotide no no MGHHHHHHHHHHSSGHIEGRHMDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP REARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE QQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR LVVEYPA MGHHHHHHHHHHSSGHIEGRHMDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP REARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE QQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR LVVEYPA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample 562 Escherichia coli 562 Escherichia coli 2 2.44 49.67 VAPOR DIFFUSION, SITTING DROP 7.5 ammonium sulfate, magnesium chloride, peg400, hepes, tcep, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K 295 (NH4)2SO4 1 MgCl2 1 PEG 400 1 HEPES 1 TCEP 1 3.308 1 19 B 402 B 422 2.316 B_G402:C422_B 1 -9.650 -0.359 0.189 -0.106 5.809 1 19 B 403 B 421 1.556 B_C403:G421_B 2 -12.568 0.314 -0.126 -0.212 -5.134 1 20 B 404 B 420 1.117 B_A404:U420_B 3 -9.074 0.028 0.031 -0.082 -4.351 1 20 B 405 B 419 -3.027 B_A405:U419_B 4 -11.197 0.034 -0.028 -0.158 -4.467 1 19 B 406 B 418 1.716 B_C406:G418_B 5 -11.319 0.302 0.211 -0.169 -12.117 1 19 B 407 B 417 -0.511 B_G407:C417_B 6 -14.966 -0.153 -0.120 -0.122 -9.001 1 19 B 408 B 416 -0.615 B_G408:C416_B 7 -10.039 -0.013 0.173 -0.127 19.607 4 24 B 409 B 413 -95.544 B_U409:A413_B 8 16.369 4.256 0.626 -2.165 2.967 35.660 B B 402 403 8.669 B B 422 421 3.238 5.290 -0.202 -1.595 BB_G402C403:G421C422_BB 1 1.229 -2.015 35.257 -3.337 0.500 2.345 33.275 B B 403 404 24.832 B B 421 420 3.401 13.812 0.249 -1.888 BB_C403A404:U420G421_BB 2 0.120 -0.215 30.347 -5.422 -0.416 2.944 33.779 B B 404 405 9.664 B B 420 419 3.210 5.591 -0.534 -1.361 BB_A404A405:U419U420_BB 3 0.323 -0.558 33.325 -3.200 0.968 2.891 33.592 B B 405 406 11.049 B B 419 418 3.187 6.345 0.954 -1.602 BB_A405C406:G418U419_BB 4 2.093 -3.645 32.939 -3.747 -1.330 2.609 31.510 B B 406 407 17.660 B B 418 417 3.316 9.387 0.461 -2.016 BB_C406G407:C417G418_BB 5 6.262 -11.781 29.468 -5.353 0.246 3.085 32.989 B B 407 408 2.622 B B 417 416 3.144 1.487 0.512 -1.957 BB_G407G408:C416C417_BB 6 2.578 -4.546 32.859 -3.687 -0.484 2.839 72.202 B B 408 409 2.390 B B 416 413 2.984 2.816 -2.423 -1.432 BB_G408U409:A413C416_BB 7 3.191 -2.709 72.094 -1.299 2.151 chem_comp_atom chem_comp_bond database_2 struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-12-31 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2001-10-25 REL REL SO4 SULFATE ION HOH water SO4 907 3 SO4 SO4 907 B SO4 901 3 SO4 SO4 901 A SO4 902 3 SO4 SO4 902 A SO4 903 3 SO4 SO4 903 A SO4 904 3 SO4 SO4 904 A SO4 905 3 SO4 SO4 905 A SO4 906 3 SO4 SO4 906 A SO4 908 3 SO4 SO4 908 A SO4 909 3 SO4 SO4 909 A SO4 910 3 SO4 SO4 910 A HOH 503 4 HOH HOH 503 B HOH 512 4 HOH HOH 512 B HOH 514 4 HOH HOH 514 B HOH 526 4 HOH HOH 526 B HOH 530 4 HOH HOH 530 B HOH 533 4 HOH HOH 533 B HOH 535 4 HOH HOH 535 B HOH 539 4 HOH HOH 539 B HOH 548 4 HOH HOH 548 B HOH 554 4 HOH HOH 554 B HOH 559 4 HOH HOH 559 B HOH 560 4 HOH HOH 560 B HOH 564 4 HOH HOH 564 B HOH 565 4 HOH HOH 565 B HOH 568 4 HOH HOH 568 B HOH 569 4 HOH HOH 569 B HOH 571 4 HOH HOH 571 B HOH 573 4 HOH HOH 573 B HOH 580 4 HOH HOH 580 B HOH 585 4 HOH HOH 585 B HOH 588 4 HOH HOH 588 B HOH 590 4 HOH HOH 590 B HOH 599 4 HOH HOH 599 B HOH 608 4 HOH HOH 608 B HOH 609 4 HOH HOH 609 B HOH 610 4 HOH HOH 610 B HOH 611 4 HOH HOH 611 B HOH 612 4 HOH HOH 612 B HOH 613 4 HOH HOH 613 B HOH 621 4 HOH HOH 621 B HOH 622 4 HOH HOH 622 B HOH 623 4 HOH HOH 623 B HOH 624 4 HOH HOH 624 B HOH 631 4 HOH HOH 631 B HOH 632 4 HOH HOH 632 B HOH 633 4 HOH HOH 633 B HOH 634 4 HOH HOH 634 B HOH 644 4 HOH HOH 644 B HOH 653 4 HOH HOH 653 B HOH 656 4 HOH HOH 656 B HOH 664 4 HOH HOH 664 B HOH 684 4 HOH HOH 684 B HOH 694 4 HOH HOH 694 B HOH 701 4 HOH HOH 701 B HOH 709 4 HOH HOH 709 B HOH 714 4 HOH HOH 714 B HOH 721 4 HOH HOH 721 B HOH 722 4 HOH HOH 722 B HOH 725 4 HOH HOH 725 B HOH 735 4 HOH HOH 735 B HOH 737 4 HOH HOH 737 B HOH 745 4 HOH HOH 745 B HOH 746 4 HOH HOH 746 B HOH 750 4 HOH HOH 750 B HOH 751 4 HOH HOH 751 B HOH 752 4 HOH HOH 752 B HOH 754 4 HOH HOH 754 B HOH 501 4 HOH HOH 501 A HOH 502 4 HOH HOH 502 A HOH 504 4 HOH HOH 504 A HOH 505 4 HOH HOH 505 A HOH 506 4 HOH HOH 506 A HOH 507 4 HOH HOH 507 A HOH 508 4 HOH HOH 508 A HOH 509 4 HOH HOH 509 A HOH 510 4 HOH HOH 510 A HOH 511 4 HOH HOH 511 A HOH 513 4 HOH HOH 513 A HOH 515 4 HOH HOH 515 A HOH 516 4 HOH HOH 516 A HOH 517 4 HOH HOH 517 A HOH 518 4 HOH HOH 518 A HOH 519 4 HOH HOH 519 A HOH 520 4 HOH HOH 520 A HOH 521 4 HOH HOH 521 A HOH 522 4 HOH HOH 522 A HOH 523 4 HOH HOH 523 A HOH 524 4 HOH HOH 524 A HOH 525 4 HOH HOH 525 A HOH 527 4 HOH HOH 527 A HOH 528 4 HOH HOH 528 A HOH 529 4 HOH HOH 529 A HOH 531 4 HOH HOH 531 A HOH 532 4 HOH HOH 532 A HOH 534 4 HOH HOH 534 A HOH 536 4 HOH HOH 536 A HOH 537 4 HOH HOH 537 A HOH 538 4 HOH HOH 538 A HOH 540 4 HOH HOH 540 A HOH 541 4 HOH HOH 541 A HOH 542 4 HOH HOH 542 A HOH 543 4 HOH HOH 543 A HOH 544 4 HOH HOH 544 A HOH 545 4 HOH HOH 545 A HOH 546 4 HOH HOH 546 A HOH 547 4 HOH HOH 547 A HOH 549 4 HOH HOH 549 A HOH 550 4 HOH HOH 550 A HOH 551 4 HOH HOH 551 A HOH 552 4 HOH HOH 552 A HOH 553 4 HOH HOH 553 A HOH 555 4 HOH HOH 555 A HOH 556 4 HOH HOH 556 A HOH 557 4 HOH HOH 557 A HOH 558 4 HOH HOH 558 A HOH 561 4 HOH HOH 561 A HOH 562 4 HOH HOH 562 A HOH 563 4 HOH HOH 563 A HOH 566 4 HOH HOH 566 A HOH 567 4 HOH HOH 567 A HOH 570 4 HOH HOH 570 A HOH 572 4 HOH HOH 572 A HOH 574 4 HOH HOH 574 A HOH 575 4 HOH HOH 575 A HOH 576 4 HOH HOH 576 A HOH 577 4 HOH HOH 577 A HOH 578 4 HOH HOH 578 A HOH 579 4 HOH HOH 579 A HOH 581 4 HOH HOH 581 A HOH 582 4 HOH HOH 582 A HOH 583 4 HOH HOH 583 A HOH 584 4 HOH HOH 584 A HOH 586 4 HOH HOH 586 A HOH 587 4 HOH HOH 587 A HOH 589 4 HOH HOH 589 A HOH 591 4 HOH HOH 591 A HOH 592 4 HOH HOH 592 A HOH 593 4 HOH HOH 593 A HOH 594 4 HOH HOH 594 A HOH 595 4 HOH HOH 595 A HOH 596 4 HOH HOH 596 A HOH 597 4 HOH HOH 597 A HOH 598 4 HOH HOH 598 A HOH 600 4 HOH HOH 600 A HOH 601 4 HOH HOH 601 A HOH 602 4 HOH HOH 602 A HOH 603 4 HOH HOH 603 A HOH 604 4 HOH HOH 604 A HOH 605 4 HOH HOH 605 A HOH 606 4 HOH HOH 606 A HOH 607 4 HOH HOH 607 A HOH 614 4 HOH HOH 614 A HOH 615 4 HOH HOH 615 A HOH 616 4 HOH HOH 616 A HOH 617 4 HOH HOH 617 A HOH 618 4 HOH HOH 618 A HOH 619 4 HOH HOH 619 A HOH 620 4 HOH HOH 620 A HOH 625 4 HOH HOH 625 A HOH 626 4 HOH HOH 626 A HOH 627 4 HOH HOH 627 A HOH 628 4 HOH HOH 628 A HOH 629 4 HOH HOH 629 A HOH 630 4 HOH HOH 630 A HOH 635 4 HOH HOH 635 A HOH 636 4 HOH HOH 636 A HOH 637 4 HOH HOH 637 A HOH 638 4 HOH HOH 638 A HOH 639 4 HOH HOH 639 A HOH 640 4 HOH HOH 640 A HOH 641 4 HOH HOH 641 A HOH 642 4 HOH HOH 642 A HOH 643 4 HOH HOH 643 A HOH 645 4 HOH HOH 645 A HOH 646 4 HOH HOH 646 A HOH 647 4 HOH HOH 647 A HOH 648 4 HOH HOH 648 A HOH 649 4 HOH HOH 649 A HOH 650 4 HOH HOH 650 A HOH 651 4 HOH HOH 651 A HOH 652 4 HOH HOH 652 A HOH 654 4 HOH HOH 654 A HOH 655 4 HOH HOH 655 A HOH 657 4 HOH HOH 657 A HOH 658 4 HOH HOH 658 A HOH 659 4 HOH HOH 659 A HOH 660 4 HOH HOH 660 A HOH 661 4 HOH HOH 661 A HOH 662 4 HOH HOH 662 A HOH 663 4 HOH HOH 663 A HOH 665 4 HOH HOH 665 A HOH 666 4 HOH HOH 666 A HOH 667 4 HOH HOH 667 A HOH 668 4 HOH HOH 668 A HOH 669 4 HOH HOH 669 A HOH 670 4 HOH HOH 670 A HOH 671 4 HOH HOH 671 A HOH 672 4 HOH HOH 672 A HOH 673 4 HOH HOH 673 A HOH 674 4 HOH HOH 674 A HOH 675 4 HOH HOH 675 A HOH 676 4 HOH HOH 676 A HOH 677 4 HOH HOH 677 A HOH 678 4 HOH HOH 678 A HOH 679 4 HOH HOH 679 A HOH 680 4 HOH HOH 680 A HOH 681 4 HOH HOH 681 A HOH 682 4 HOH HOH 682 A HOH 683 4 HOH HOH 683 A HOH 685 4 HOH HOH 685 A HOH 686 4 HOH HOH 686 A HOH 687 4 HOH HOH 687 A HOH 688 4 HOH HOH 688 A HOH 689 4 HOH HOH 689 A HOH 690 4 HOH HOH 690 A HOH 691 4 HOH HOH 691 A HOH 692 4 HOH HOH 692 A HOH 693 4 HOH HOH 693 A HOH 695 4 HOH HOH 695 A HOH 696 4 HOH HOH 696 A HOH 697 4 HOH HOH 697 A HOH 698 4 HOH HOH 698 A HOH 699 4 HOH HOH 699 A HOH 700 4 HOH HOH 700 A HOH 702 4 HOH HOH 702 A HOH 703 4 HOH HOH 703 A HOH 704 4 HOH HOH 704 A HOH 705 4 HOH HOH 705 A HOH 706 4 HOH HOH 706 A HOH 707 4 HOH HOH 707 A HOH 708 4 HOH HOH 708 A HOH 710 4 HOH HOH 710 A HOH 711 4 HOH HOH 711 A HOH 712 4 HOH HOH 712 A HOH 713 4 HOH HOH 713 A HOH 715 4 HOH HOH 715 A HOH 716 4 HOH HOH 716 A HOH 717 4 HOH HOH 717 A HOH 718 4 HOH HOH 718 A HOH 719 4 HOH HOH 719 A HOH 720 4 HOH HOH 720 A HOH 723 4 HOH HOH 723 A HOH 724 4 HOH HOH 724 A HOH 726 4 HOH HOH 726 A HOH 727 4 HOH HOH 727 A HOH 728 4 HOH HOH 728 A HOH 729 4 HOH HOH 729 A HOH 730 4 HOH HOH 730 A HOH 731 4 HOH HOH 731 A HOH 732 4 HOH HOH 732 A HOH 733 4 HOH HOH 733 A HOH 734 4 HOH HOH 734 A HOH 736 4 HOH HOH 736 A HOH 738 4 HOH HOH 738 A HOH 739 4 HOH HOH 739 A HOH 740 4 HOH HOH 740 A HOH 741 4 HOH HOH 741 A HOH 742 4 HOH HOH 742 A HOH 743 4 HOH HOH 743 A HOH 744 4 HOH HOH 744 A HOH 747 4 HOH HOH 747 A HOH 748 4 HOH HOH 748 A HOH 749 4 HOH HOH 749 A HOH 753 4 HOH HOH 753 A HOH 755 4 HOH HOH 755 A HOH 756 4 HOH HOH 756 A HOH 757 4 HOH HOH 757 A HOH 758 4 HOH HOH 758 A HOH 759 4 HOH HOH 759 A GUA 401 n 1 G 401 B GUA 402 n 2 G 402 B CYT 403 n 3 C 403 B ADE 404 n 4 A 404 B ADE 405 n 5 A 405 B CYT 406 n 6 C 406 B GUA 407 n 7 G 407 B GUA 408 n 8 G 408 B URI 409 n 9 U 409 B FHP 410 n 10 FHU 410 B CYT 411 n 11 C 411 B GUA 412 n 12 G 412 B ADE 413 n 13 A 413 B URI 414 n 14 U 414 B CYT 415 n 15 C 415 B CYT 416 n 16 C 416 B CYT 417 n 17 C 417 B GUA 418 n 18 G 418 B URI 419 n 19 U 419 B URI 420 n 20 U 420 B GUA 421 n 21 G 421 B CYT 422 n 22 C 422 B n 1 -12 A n 2 -11 A n 3 -10 A n 4 -9 A n 5 -8 A n 6 -7 A n 7 -6 A n 8 -5 A n 9 -4 A n 10 -3 A n 11 -2 A n 12 -1 A n 13 0 A n 14 1 A n 15 2 A n 16 3 A n 17 4 A n 18 5 A n 19 6 A n 20 7 A n 21 8 A MET 9 n 22 MET 9 A ASP 10 n 23 ASP 10 A ILE 11 n 24 ILE 11 A ASN 12 n 25 ASN 12 A GLY 13 n 26 GLY 13 A VAL 14 n 27 VAL 14 A LEU 15 n 28 LEU 15 A LEU 16 n 29 LEU 16 A LEU 17 n 30 LEU 17 A ASP 18 n 31 ASP 18 A LYS 19 n 32 LYS 19 A PRO 20 n 33 PRO 20 A GLN 21 n 34 GLN 21 A GLY 22 n 35 GLY 22 A MET 23 n 36 MET 23 A SER 24 n 37 SER 24 A SER 25 n 38 SER 25 A ASN 26 n 39 ASN 26 A ASP 27 n 40 ASP 27 A ALA 28 n 41 ALA 28 A LEU 29 n 42 LEU 29 A GLN 30 n 43 GLN 30 A LYS 31 n 44 LYS 31 A VAL 32 n 45 VAL 32 A LYS 33 n 46 LYS 33 A ARG 34 n 47 ARG 34 A ILE 35 n 48 ILE 35 A TYR 36 n 49 TYR 36 A ASN 37 n 50 ASN 37 A ALA 38 n 51 ALA 38 A ASN 39 n 52 ASN 39 A ARG 40 n 53 ARG 40 A ALA 41 n 54 ALA 41 A GLY 42 n 55 GLY 42 A HIS 43 n 56 HIS 43 A THR 44 n 57 THR 44 A GLY 45 n 58 GLY 45 A ALA 46 n 59 ALA 46 A LEU 47 n 60 LEU 47 A ASP 48 n 61 ASP 48 A PRO 49 n 62 PRO 49 A LEU 50 n 63 LEU 50 A ALA 51 n 64 ALA 51 A THR 52 n 65 THR 52 A GLY 53 n 66 GLY 53 A MET 54 n 67 MET 54 A LEU 55 n 68 LEU 55 A PRO 56 n 69 PRO 56 A ILE 57 n 70 ILE 57 A CYS 58 n 71 CYS 58 A LEU 59 n 72 LEU 59 A GLY 60 n 73 GLY 60 A GLU 61 n 74 GLU 61 A ALA 62 n 75 ALA 62 A THR 63 n 76 THR 63 A LYS 64 n 77 LYS 64 A PHE 65 n 78 PHE 65 A SER 66 n 79 SER 66 A GLN 67 n 80 GLN 67 A TYR 68 n 81 TYR 68 A LEU 69 n 82 LEU 69 A LEU 70 n 83 LEU 70 A ASP 71 n 84 ASP 71 A SER 72 n 85 SER 72 A ASP 73 n 86 ASP 73 A LYS 74 n 87 LYS 74 A ARG 75 n 88 ARG 75 A TYR 76 n 89 TYR 76 A ARG 77 n 90 ARG 77 A VAL 78 n 91 VAL 78 A ILE 79 n 92 ILE 79 A ALA 80 n 93 ALA 80 A ARG 81 n 94 ARG 81 A LEU 82 n 95 LEU 82 A GLY 83 n 96 GLY 83 A GLN 84 n 97 GLN 84 A ARG 85 n 98 ARG 85 A THR 86 n 99 THR 86 A ASP 87 n 100 ASP 87 A THR 88 n 101 THR 88 A SER 89 n 102 SER 89 A ASP 90 n 103 ASP 90 A ALA 91 n 104 ALA 91 A ASP 92 n 105 ASP 92 A GLY 93 n 106 GLY 93 A GLN 94 n 107 GLN 94 A ILE 95 n 108 ILE 95 A VAL 96 n 109 VAL 96 A GLU 97 n 110 GLU 97 A GLU 98 n 111 GLU 98 A ARG 99 n 112 ARG 99 A PRO 100 n 113 PRO 100 A VAL 101 n 114 VAL 101 A THR 102 n 115 THR 102 A PHE 103 n 116 PHE 103 A SER 104 n 117 SER 104 A ALA 105 n 118 ALA 105 A GLU 106 n 119 GLU 106 A GLN 107 n 120 GLN 107 A LEU 108 n 121 LEU 108 A ALA 109 n 122 ALA 109 A ALA 110 n 123 ALA 110 A ALA 111 n 124 ALA 111 A LEU 112 n 125 LEU 112 A ASP 113 n 126 ASP 113 A THR 114 n 127 THR 114 A PHE 115 n 128 PHE 115 A ARG 116 n 129 ARG 116 A GLY 117 n 130 GLY 117 A ASP 118 n 131 ASP 118 A ILE 119 n 132 ILE 119 A GLU 120 n 133 GLU 120 A GLN 121 n 134 GLN 121 A ILE 122 n 135 ILE 122 A PRO 123 n 136 PRO 123 A SER 124 n 137 SER 124 A MET 125 n 138 MET 125 A TYR 126 n 139 TYR 126 A SER 127 n 140 SER 127 A ALA 128 n 141 ALA 128 A LEU 129 n 142 LEU 129 A LYS 130 n 143 LYS 130 A TYR 131 n 144 TYR 131 A GLN 132 n 145 GLN 132 A GLY 133 n 146 GLY 133 A LYS 134 n 147 LYS 134 A LYS 135 n 148 LYS 135 A LEU 136 n 149 LEU 136 A TYR 137 n 150 TYR 137 A GLU 138 n 151 GLU 138 A TYR 139 n 152 TYR 139 A ALA 140 n 153 ALA 140 A ARG 141 n 154 ARG 141 A GLN 142 n 155 GLN 142 A GLY 143 n 156 GLY 143 A ILE 144 n 157 ILE 144 A GLU 145 n 158 GLU 145 A VAL 146 n 159 VAL 146 A PRO 147 n 160 PRO 147 A ARG 148 n 161 ARG 148 A GLU 149 n 162 GLU 149 A ALA 150 n 163 ALA 150 A ARG 151 n 164 ARG 151 A PRO 152 n 165 PRO 152 A ILE 153 n 166 ILE 153 A THR 154 n 167 THR 154 A VAL 155 n 168 VAL 155 A TYR 156 n 169 TYR 156 A GLU 157 n 170 GLU 157 A LEU 158 n 171 LEU 158 A LEU 159 n 172 LEU 159 A PHE 160 n 173 PHE 160 A ILE 161 n 174 ILE 161 A ARG 162 n 175 ARG 162 A HIS 163 n 176 HIS 163 A GLU 164 n 177 GLU 164 A GLY 165 n 178 GLY 165 A ASN 166 n 179 ASN 166 A GLU 167 n 180 GLU 167 A LEU 168 n 181 LEU 168 A GLU 169 n 182 GLU 169 A LEU 170 n 183 LEU 170 A GLU 171 n 184 GLU 171 A ILE 172 n 185 ILE 172 A HIS 173 n 186 HIS 173 A CYS 174 n 187 CYS 174 A SER 175 n 188 SER 175 A LYS 176 n 189 LYS 176 A GLY 177 n 190 GLY 177 A THR 178 n 191 THR 178 A TYR 179 n 192 TYR 179 A ILE 180 n 193 ILE 180 A ARG 181 n 194 ARG 181 A THR 182 n 195 THR 182 A ILE 183 n 196 ILE 183 A ILE 184 n 197 ILE 184 A ASP 185 n 198 ASP 185 A ASP 186 n 199 ASP 186 A LEU 187 n 200 LEU 187 A GLY 188 n 201 GLY 188 A GLU 189 n 202 GLU 189 A LYS 190 n 203 LYS 190 A LEU 191 n 204 LEU 191 A GLY 192 n 205 GLY 192 A CYS 193 n 206 CYS 193 A GLY 194 n 207 GLY 194 A ALA 195 n 208 ALA 195 A HIS 196 n 209 HIS 196 A VAL 197 n 210 VAL 197 A ILE 198 n 211 ILE 198 A TYR 199 n 212 TYR 199 A LEU 200 n 213 LEU 200 A ARG 201 n 214 ARG 201 A ARG 202 n 215 ARG 202 A LEU 203 n 216 LEU 203 A ALA 204 n 217 ALA 204 A VAL 205 n 218 VAL 205 A SER 206 n 219 SER 206 A LYS 207 n 220 LYS 207 A TYR 208 n 221 TYR 208 A PRO 209 n 222 PRO 209 A VAL 210 n 223 VAL 210 A GLU 211 n 224 GLU 211 A ARG 212 n 225 ARG 212 A MET 213 n 226 MET 213 A VAL 214 n 227 VAL 214 A THR 215 n 228 THR 215 A LEU 216 n 229 LEU 216 A GLU 217 n 230 GLU 217 A HIS 218 n 231 HIS 218 A LEU 219 n 232 LEU 219 A ARG 220 n 233 ARG 220 A GLU 221 n 234 GLU 221 A LEU 222 n 235 LEU 222 A VAL 223 n 236 VAL 223 A GLU 224 n 237 GLU 224 A GLN 225 n 238 GLN 225 A ALA 226 n 239 ALA 226 A GLU 227 n 240 GLU 227 A GLN 228 n 241 GLN 228 A GLN 229 n 242 GLN 229 A ASP 230 n 243 ASP 230 A ILE 231 n 244 ILE 231 A PRO 232 n 245 PRO 232 A ALA 233 n 246 ALA 233 A ALA 234 n 247 ALA 234 A GLU 235 n 248 GLU 235 A LEU 236 n 249 LEU 236 A LEU 237 n 250 LEU 237 A ASP 238 n 251 ASP 238 A PRO 239 n 252 PRO 239 A LEU 240 n 253 LEU 240 A LEU 241 n 254 LEU 241 A MET 242 n 255 MET 242 A PRO 243 n 256 PRO 243 A MET 244 n 257 MET 244 A ASP 245 n 258 ASP 245 A SER 246 n 259 SER 246 A PRO 247 n 260 PRO 247 A ALA 248 n 261 ALA 248 A SER 249 n 262 SER 249 A ASP 250 n 263 ASP 250 A TYR 251 n 264 TYR 251 A PRO 252 n 265 PRO 252 A VAL 253 n 266 VAL 253 A VAL 254 n 267 VAL 254 A ASN 255 n 268 ASN 255 A LEU 256 n 269 LEU 256 A PRO 257 n 270 PRO 257 A LEU 258 n 271 LEU 258 A THR 259 n 272 THR 259 A SER 260 n 273 SER 260 A SER 261 n 274 SER 261 A VAL 262 n 275 VAL 262 A TYR 263 n 276 TYR 263 A PHE 264 n 277 PHE 264 A LYS 265 n 278 LYS 265 A ASN 266 n 279 ASN 266 A GLY 267 n 280 GLY 267 A ASN 268 n 281 ASN 268 A PRO 269 n 282 PRO 269 A VAL 270 n 283 VAL 270 A ARG 271 n 284 ARG 271 A THR 272 n 285 THR 272 A SER 273 n 286 SER 273 A GLY 274 n 287 GLY 274 A ALA 275 n 288 ALA 275 A PRO 276 n 289 PRO 276 A LEU 277 n 290 LEU 277 A GLU 278 n 291 GLU 278 A GLY 279 n 292 GLY 279 A LEU 280 n 293 LEU 280 A VAL 281 n 294 VAL 281 A ARG 282 n 295 ARG 282 A VAL 283 n 296 VAL 283 A THR 284 n 297 THR 284 A GLU 285 n 298 GLU 285 A GLY 286 n 299 GLY 286 A GLU 287 n 300 GLU 287 A ASN 288 n 301 ASN 288 A GLY 289 n 302 GLY 289 A LYS 290 n 303 LYS 290 A PHE 291 n 304 PHE 291 A ILE 292 n 305 ILE 292 A GLY 293 n 306 GLY 293 A MET 294 n 307 MET 294 A GLY 295 n 308 GLY 295 A GLU 296 n 309 GLU 296 A ILE 297 n 310 ILE 297 A ASP 298 n 311 ASP 298 A ASP 299 n 312 ASP 299 A GLU 300 n 313 GLU 300 A GLY 301 n 314 GLY 301 A ARG 302 n 315 ARG 302 A VAL 303 n 316 VAL 303 A ALA 304 n 317 ALA 304 A PRO 305 n 318 PRO 305 A ARG 306 n 319 ARG 306 A ARG 307 n 320 ARG 307 A LEU 308 n 321 LEU 308 A VAL 309 n 322 VAL 309 A VAL 310 n 323 VAL 310 A GLU 311 n 324 GLU 311 A TYR 312 n 325 TYR 312 A n 326 313 A n 327 314 A author_defined_assembly 2 dimeric B FHU 410 A FHU 10 U 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLN 121 B N GLN 134 A O ARG 151 B O ARG 164 A N LEU 159 B N LEU 172 A O GLU 171 B O GLU 184 A O LEU 168 B O LEU 181 A N ALA 80 B N ALA 93 A N ARG 81 B N ARG 94 A O HIS 196 B O HIS 209 A O ARG 202 B O ARG 215 A N THR 52 B N THR 65 A O LEU 59 B O LEU 72 A N GLY 13 B N GLY 26 A N ASP 18 B N ASP 31 A O VAL 214 B O VAL 227 A N GLN 121 B N GLN 134 A O ARG 151 B O ARG 164 A N LEU 159 B N LEU 172 A O GLU 171 B O GLU 184 A O LEU 168 B O LEU 181 A N ALA 80 B N ALA 93 A N ARG 81 B N ARG 94 A O HIS 196 B O HIS 209 A O ARG 202 B O ARG 215 A N THR 52 B N THR 65 A O CYS 58 B O CYS 71 A N GLY 42 B N GLY 55 A N ARG 85 B N ARG 98 A O VAL 96 B O VAL 109 A N TYR 131 B N TYR 144 A O LYS 134 B O LYS 147 A N VAL 254 B N VAL 267 A O ARG 282 B O ARG 295 A N VAL 281 B N VAL 294 A O GLY 295 B O GLY 308 A N MET 294 B N MET 307 A O ARG 307 B O ARG 320 1 A CG MET 9 B CG MET 22 1 Y 1 A SD MET 9 B SD MET 22 1 Y 1 A CE MET 9 B CE MET 22 1 Y 1 A CG ASP 10 B CG ASP 23 1 Y 1 A OD1 ASP 10 B OD1 ASP 23 1 Y 1 A OD2 ASP 10 B OD2 ASP 23 1 Y 1 A CG ASN 39 B CG ASN 52 1 Y 1 A OD1 ASN 39 B OD1 ASN 52 1 Y 1 A ND2 ASN 39 B ND2 ASN 52 1 Y 1 A CD GLN 94 B CD GLN 107 1 Y 1 A OE1 GLN 94 B OE1 GLN 107 1 Y 1 A NE2 GLN 94 B NE2 GLN 107 1 Y 1 A CD GLU 106 B CD GLU 119 1 Y 1 A OE1 GLU 106 B OE1 GLU 119 1 Y 1 A OE2 GLU 106 B OE2 GLU 119 1 Y 1 A CD GLN 132 B CD GLN 145 1 Y 1 A OE1 GLN 132 B OE1 GLN 145 1 Y 1 A NE2 GLN 132 B NE2 GLN 145 1 Y 1 A CE LYS 207 B CE LYS 220 1 Y 1 A NZ LYS 207 B NZ LYS 220 1 Y 1 A CD GLU 227 B CD GLU 240 1 Y 1 A OE1 GLU 227 B OE1 GLU 240 1 Y 1 A OE2 GLU 227 B OE2 GLU 240 1 Y 1 A OE1 GLU 287 B OE1 GLU 300 1 Y 1 A OE2 GLU 287 B OE2 GLU 300 1 Y 1 A CG ASN 288 B CG ASN 301 1 Y 1 A OD1 ASN 288 B OD1 ASN 301 1 Y 1 A ND2 ASN 288 B ND2 ASN 301 1 Y 1 A CZ ARG 306 B CZ ARG 319 1 Y 1 A NH1 ARG 306 B NH1 ARG 319 1 Y 1 A NH2 ARG 306 B NH2 ARG 319 1 Y 1 A C TYR 312 B C TYR 325 1 Y 1 A O TYR 312 B O TYR 325 1 Y 1 A CB TYR 312 B CB TYR 325 1 Y 1 A CG TYR 312 B CG TYR 325 1 Y 1 A CD1 TYR 312 B CD1 TYR 325 1 Y 1 A CD2 TYR 312 B CD2 TYR 325 1 Y 1 A CE1 TYR 312 B CE1 TYR 325 1 Y 1 A CE2 TYR 312 B CE2 TYR 325 1 Y 1 A CZ TYR 312 B CZ TYR 325 1 Y 1 A OH TYR 312 B OH TYR 325 1 Y 1 A MET -12 B MET 1 1 Y 1 A GLY -11 B GLY 2 1 Y 1 A HIS -10 B HIS 3 1 Y 1 A HIS -9 B HIS 4 1 Y 1 A HIS -8 B HIS 5 1 Y 1 A HIS -7 B HIS 6 1 Y 1 A HIS -6 B HIS 7 1 Y 1 A HIS -5 B HIS 8 1 Y 1 A HIS -4 B HIS 9 1 Y 1 A HIS -3 B HIS 10 1 Y 1 A HIS -2 B HIS 11 1 Y 1 A HIS -1 B HIS 12 1 Y 1 A SER 0 B SER 13 1 Y 1 A SER 1 B SER 14 1 Y 1 A GLY 2 B GLY 15 1 Y 1 A HIS 3 B HIS 16 1 Y 1 A ILE 4 B ILE 17 1 Y 1 A GLU 5 B GLU 18 1 Y 1 A GLY 6 B GLY 19 1 Y 1 A ARG 7 B ARG 20 1 Y 1 A HIS 8 B HIS 21 1 Y 1 A PRO 313 B PRO 326 1 Y 1 A ALA 314 B ALA 327 1 Y 1 B U 409 0.062 SIDE CHAIN 1 5.56 0.70 108.50 114.06 B B B O4' C1' N1 U U U 409 409 409 N 1 B B O6 O6 G G 401 401 1.60 1_555 2_556 1 B B O O HOH HOH 754 754 1.74 1_555 2_556 1 A SER 206 52.89 -137.99 1 A SER 273 -55.77 -79.20 1 A GLU 278 -171.35 -177.66 1 A GLU 300 -65.01 4.65 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA-FHP_REP.PARAM DNA-RNA-FHP.TOP ION.PARAM ION.TOP WATER_REP.PARAM WATER.TOP 28.1 -4.09 0.00 0.08 5.58 0.00 -1.49 0.2110000 0.004 0.1840000 0.1840000 0.1840000 1.85 28.27 3444 34482 34482 10.0 94.3 RANDOM 562571.39 0.000000 1 RESTRAINED THROUGHOUT 0.0 MAD Engh & Huber FLAT MODEL 51.2832 0.373386 0.22 0.19 5.00 0.18 0.14 1.85 28.27 259 3166 50 466 2391 0.006 1.3 23.6 1.65 1.69 1.50 2.43 2.00 2.52 2.00 3.60 2.50 0.2870000 0.013 0.2360000 1.97 526 4732 6 10.0 87.2 25.3 1.85 30 1K8W 35366 35366 0 0 1,2 96.8 1.85 1.92 94.3 refinement CNS data reduction DENZO data scaling SCALEPACK phasing CNS Crystal structure of the E. coli pseudouridine synthase TruB bound to a T stem-loop RNA 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N The T stem-loop RNA used in crystallization contains all the structural determinants employed by TruB in modifying intact tRNA A SER 24 B SER 37 HELX_P A TYR 36 B TYR 49 1 1 13 A GLU 61 B GLU 74 HELX_P A PHE 65 B PHE 78 5 2 5 A SER 66 B SER 79 HELX_P A ASP 71 B ASP 84 1 3 6 A SER 104 B SER 117 HELX_P A THR 114 B THR 127 1 4 11 A LEU 136 B LEU 149 HELX_P A GLN 142 B GLN 155 1 5 7 A TYR 179 B TYR 192 HELX_P A LEU 191 B LEU 204 1 6 13 A PRO 209 B PRO 222 HELX_P A MET 213 B MET 226 5 7 5 A LEU 216 B LEU 229 HELX_P A GLN 229 B GLN 242 1 8 14 A ALA 233 B ALA 246 HELX_P A ASP 238 B ASP 251 1 9 6 A PRO 239 B PRO 252 HELX_P A LEU 241 B LEU 254 5 10 3 A ASP 245 B ASP 258 HELX_P A SER 249 B SER 262 5 11 5 A PRO 257 B PRO 270 HELX_P A LYS 265 B LYS 278 1 12 9 covale 1.600 both B U 409 A O3' U 9 1_555 B FHU 410 A P FHU 10 1_555 covale 1.600 both B FHU 410 A O3' FHU 10 1_555 B C 411 A P C 11 1_555 hydrog WATSON-CRICK B G 402 A N1 G 2 1_555 B C 422 A N3 C 22 1_555 hydrog WATSON-CRICK B G 402 A N2 G 2 1_555 B C 422 A O2 C 22 1_555 hydrog WATSON-CRICK B G 402 A O6 G 2 1_555 B C 422 A N4 C 22 1_555 hydrog WATSON-CRICK B C 403 A N3 C 3 1_555 B G 421 A N1 G 21 1_555 hydrog WATSON-CRICK B C 403 A N4 C 3 1_555 B G 421 A O6 G 21 1_555 hydrog WATSON-CRICK B C 403 A O2 C 3 1_555 B G 421 A N2 G 21 1_555 hydrog WATSON-CRICK B A 404 A N1 A 4 1_555 B U 420 A N3 U 20 1_555 hydrog WATSON-CRICK B A 404 A N6 A 4 1_555 B U 420 A O4 U 20 1_555 hydrog WATSON-CRICK B A 405 A N1 A 5 1_555 B U 419 A N3 U 19 1_555 hydrog WATSON-CRICK B A 405 A N6 A 5 1_555 B U 419 A O4 U 19 1_555 hydrog WATSON-CRICK B C 406 A N3 C 6 1_555 B G 418 A N1 G 18 1_555 hydrog WATSON-CRICK B C 406 A N4 C 6 1_555 B G 418 A O6 G 18 1_555 hydrog WATSON-CRICK B C 406 A O2 C 6 1_555 B G 418 A N2 G 18 1_555 hydrog WATSON-CRICK B G 407 A N1 G 7 1_555 B C 417 A N3 C 17 1_555 hydrog WATSON-CRICK B G 407 A N2 G 7 1_555 B C 417 A O2 C 17 1_555 hydrog WATSON-CRICK B G 407 A O6 G 7 1_555 B C 417 A N4 C 17 1_555 hydrog WATSON-CRICK B G 408 A N1 G 8 1_555 B C 416 A N3 C 16 1_555 hydrog WATSON-CRICK B G 408 A N2 G 8 1_555 B C 416 A O2 C 16 1_555 hydrog WATSON-CRICK B G 408 A O6 G 8 1_555 B C 416 A N4 C 16 1_555 hydrog REVERSED HOOGSTEEN B U 409 A N3 U 9 1_555 B A 413 A N7 A 13 1_555 hydrog REVERSED HOOGSTEEN B U 409 A O2 U 9 1_555 B A 413 A N6 A 13 1_555 LYASE/RNA protein-RNA complex, T stem-loop, tRNA, LYASE-RNA COMPLEX TRUB_ECOLI UNP 2 10 P60340 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTS DADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE LEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA 1K8W PDB 1 1K8W 10 314 1K8W 10 314 P60340 A 1 23 327 401 422 1K8W 401 422 1K8W B 2 1 22 8 7 2 2 4 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A GLY 117 B GLY 130 A GLN 121 B GLN 134 A ARG 151 B ARG 164 A GLU 164 B GLU 177 A GLU 167 B GLU 180 A CYS 174 B CYS 187 A LYS 74 B LYS 87 A LEU 82 B LEU 95 A ALA 195 B ALA 208 A VAL 205 B VAL 218 A THR 52 B THR 65 A LEU 59 B LEU 72 A GLY 13 B GLY 26 A LYS 19 B LYS 32 A VAL 214 B VAL 227 A THR 215 B THR 228 A GLY 117 B GLY 130 A GLN 121 B GLN 134 A ARG 151 B ARG 164 A GLU 164 B GLU 177 A GLU 167 B GLU 180 A CYS 174 B CYS 187 A LYS 74 B LYS 87 A LEU 82 B LEU 95 A ALA 195 B ALA 208 A VAL 205 B VAL 218 A THR 52 B THR 65 A LEU 59 B LEU 72 A ALA 41 B ALA 54 A HIS 43 B HIS 56 A GLN 84 B GLN 97 A THR 86 B THR 99 A ILE 95 B ILE 108 A GLU 98 B GLU 111 A LYS 130 B LYS 143 A TYR 131 B TYR 144 A LYS 134 B LYS 147 A LYS 135 B LYS 148 A VAL 253 B VAL 266 A LEU 256 B LEU 269 A LEU 280 B LEU 293 A GLU 285 B GLU 298 A LYS 290 B LYS 303 A ILE 297 B ILE 310 A VAL 303 B VAL 316 A LEU 308 B LEU 321 BINDING SITE FOR RESIDUE SO4 A 901 A SO4 901 Software 5 BINDING SITE FOR RESIDUE SO4 A 902 A SO4 902 Software 3 BINDING SITE FOR RESIDUE SO4 A 903 A SO4 903 Software 3 BINDING SITE FOR RESIDUE SO4 A 904 A SO4 904 Software 3 BINDING SITE FOR RESIDUE SO4 A 905 A SO4 905 Software 3 BINDING SITE FOR RESIDUE SO4 A 906 A SO4 906 Software 4 BINDING SITE FOR RESIDUE SO4 B 907 B SO4 907 Software 3 BINDING SITE FOR RESIDUE SO4 A 908 A SO4 908 Software 6 BINDING SITE FOR RESIDUE SO4 A 909 A SO4 909 Software 6 BINDING SITE FOR RESIDUE SO4 A 910 A SO4 910 Software 5 A LYS 31 B LYS 44 5 1_555 A ARG 34 B ARG 47 5 1_555 A ARG 220 B ARG 233 5 1_555 A HOH 562 N HOH 5 1_555 A SO4 902 E SO4 5 1_555 A LYS 31 B LYS 44 3 1_555 A ARG 220 B ARG 233 3 1_555 A SO4 901 D SO4 3 1_555 A PRO 257 B PRO 270 3 1_555 A THR 272 B THR 285 3 1_555 A SER 273 B SER 286 3 1_555 A ARG 81 B ARG 94 3 1_555 A HOH 652 N HOH 3 1_555 A HOH 679 N HOH 3 1_555 A ARG 271 B ARG 284 3 1_555 A ARG 302 B ARG 315 3 1_555 A HOH 680 N HOH 3 1_555 A THR 102 B THR 115 4 4_546 A GLN 132 B GLN 145 4 1_555 A GLY 192 B GLY 205 4 4_546 B C 406 A C 6 4 1_555 A PRO 49 B PRO 62 3 1_555 A ASP 113 B ASP 126 3 1_545 B G 412 A G 12 3 1_555 A ARG 77 B ARG 90 6 1_555 A TYR 199 B TYR 212 6 1_555 A LEU 203 B LEU 216 6 1_555 A GLN 225 B GLN 238 6 4_557 A GLN 228 B GLN 241 6 4_557 A GLN 229 B GLN 242 6 4_557 A ARG 85 B ARG 98 6 1_555 A GLU 97 B GLU 110 6 1_555 A LYS 134 B LYS 147 6 4_556 A GLU 138 B GLU 151 6 4_556 A GLN 142 B GLN 155 6 4_556 A HOH 742 N HOH 6 1_555 A LEU 258 B LEU 271 5 1_555 A SER 261 B SER 274 5 1_555 A VAL 262 B VAL 275 5 1_555 A LYS 265 B LYS 278 5 1_555 A GLU 285 B GLU 298 5 1_555 5 C 1 2 1