11.47 5.286 15.334 -8.558 A O5' DC 1 ATOM A O5' DC 1 1 1.00 1 O 11.29 4.364 14.254 -8.688 A C5' DC 1 ATOM A C5' DC 1 1 1.00 1 C 12.66 3.497 14.146 -7.469 A C4' DC 1 ATOM A C4' DC 1 1 1.00 1 C 11.71 4.319 13.900 -6.295 A O4' DC 1 ATOM A O4' DC 1 1 1.00 1 O 13.42 2.681 15.411 -7.154 A C3' DC 1 ATOM A C3' DC 1 1 1.00 1 C 12.69 1.458 15.341 -7.895 A O3' DC 1 ATOM A O3' DC 1 1 1.00 1 O 14.07 2.537 15.354 -5.683 A C2' DC 1 ATOM A C2' DC 1 1 1.00 1 C 13.72 3.720 14.565 -5.166 A C1' DC 1 ATOM A C1' DC 1 1 1.00 1 C 10.68 4.843 15.316 -4.578 A N1 DC 1 ATOM A N1 DC 1 1 1.00 1 N 12.89 5.011 15.347 -3.206 A C2 DC 1 ATOM A C2 DC 1 1 1.00 1 C 14.45 4.185 14.728 -2.530 A O2 DC 1 ATOM A O2 DC 1 1 1.00 1 O 10.15 6.026 16.024 -2.672 A N3 DC 1 ATOM A N3 DC 1 1 1.00 1 N 11.76 6.899 16.681 -3.435 A C4 DC 1 ATOM A C4 DC 1 1 1.00 1 C 9.96 7.892 17.340 -2.854 A N4 DC 1 ATOM A N4 DC 1 1 1.00 1 N 12.96 6.772 16.682 -4.867 A C5 DC 1 ATOM A C5 DC 1 1 1.00 1 C 11.84 5.744 15.995 -5.377 A C6 DC 1 ATOM A C6 DC 1 1 1.00 1 C 20.79 0.607 16.675 -8.215 A P DC 2 ATOM A P DC 1 2 1.00 1 P 21.07 -0.312 16.388 -9.355 A OP1 DC 2 ATOM A OP1 DC 1 2 1.00 1 O 20.58 1.482 17.852 -8.214 A OP2 DC 2 ATOM A OP2 DC 1 2 1.00 1 O 19.94 -0.289 16.681 -6.880 A O5' DC 2 ATOM A O5' DC 1 2 1.00 1 O 24.47 -1.161 17.803 -6.672 A C5' DC 2 ATOM A C5' DC 1 2 1.00 1 C 27.01 -1.666 17.754 -5.251 A C4' DC 2 ATOM A C4' DC 1 2 1.00 1 C 26.59 -0.663 18.210 -4.341 A O4' DC 2 ATOM A O4' DC 1 2 1.00 1 O 27.98 -2.871 18.662 -5.000 A C3' DC 2 ATOM A C3' DC 1 2 1.00 1 C 19.51 -3.739 17.974 -4.116 A O3' DC 2 ATOM A O3' DC 1 2 1.00 1 O 23.87 -2.251 19.920 -4.451 A C2' DC 2 ATOM A C2' DC 1 2 1.00 1 C 18.98 -1.026 19.443 -3.714 A C1' DC 2 ATOM A C1' DC 1 2 1.00 1 C 17.70 0.208 20.263 -3.776 A N1 DC 2 ATOM A N1 DC 1 2 1.00 1 N 14.24 0.744 20.739 -2.554 A C2 DC 2 ATOM A C2 DC 1 2 1.00 1 C 17.45 0.127 20.425 -1.523 A O2 DC 2 ATOM A O2 DC 1 2 1.00 1 O 15.67 1.858 21.479 -2.605 A N3 DC 2 ATOM A N3 DC 1 2 1.00 1 N 22.37 2.482 21.789 -3.735 A C4 DC 2 ATOM A C4 DC 1 2 1.00 1 C 16.31 3.594 22.536 -3.705 A N4 DC 2 ATOM A N4 DC 1 2 1.00 1 N 30.88 1.968 21.325 -4.990 A C5 DC 2 ATOM A C5 DC 1 2 1.00 1 C 28.89 0.850 20.582 -4.930 A C6 DC 2 ATOM A C6 DC 1 2 1.00 1 C 24.91 -5.238 18.552 -3.885 A P DT 3 ATOM A P DT 1 3 1.00 1 P 32.22 -6.087 17.462 -3.352 A OP1 DT 3 ATOM A OP1 DT 1 3 1.00 1 O 28.64 -5.648 19.370 -5.038 A OP2 DT 3 ATOM A OP2 DT 1 3 1.00 1 O 22.35 -4.948 19.560 -2.650 A O5' DT 3 ATOM A O5' DT 1 3 1.00 1 O 22.08 -4.642 18.982 -1.370 A C5' DT 3 ATOM A C5' DT 1 3 1.00 1 C 21.06 -4.557 20.134 -0.394 A C4' DT 3 ATOM A C4' DT 1 3 1.00 1 C 20.15 -3.355 20.900 -0.624 A O4' DT 3 ATOM A O4' DT 1 3 1.00 1 O 18.90 -5.656 21.179 -0.502 A C3' DT 3 ATOM A C3' DT 1 3 1.00 1 C 22.00 -5.937 21.721 0.752 A O3' DT 3 ATOM A O3' DT 1 3 1.00 1 O 23.36 -5.076 22.268 -1.391 A C2' DT 3 ATOM A C2' DT 1 3 1.00 1 C 19.79 -3.684 22.298 -0.766 A C1' DT 3 ATOM A C1' DT 1 3 1.00 1 C 21.23 -2.565 22.903 -1.511 A N1 DT 3 ATOM A N1 DT 1 3 1.00 1 N 15.47 -1.496 23.351 -0.759 A C2 DT 3 ATOM A C2 DT 1 3 1.00 1 C 18.46 -1.447 23.267 0.461 A O2 DT 3 ATOM A O2 DT 1 3 1.00 1 O 13.69 -0.488 23.900 -1.480 A N3 DT 3 ATOM A N3 DT 1 3 1.00 1 N 12.99 -0.400 24.061 -2.840 A C4 DT 3 ATOM A C4 DT 1 3 1.00 1 C 19.86 0.580 24.576 -3.331 A O4 DT 3 ATOM A O4 DT 1 3 1.00 1 O 16.74 -1.550 23.571 -3.567 A C5 DT 3 ATOM A C5 DT 1 3 1.00 1 C 26.96 -1.471 23.740 -5.060 A C7 DT 3 ATOM A C7 DT 1 3 1.00 1 C 17.53 -2.556 23.028 -2.888 A C6 DT 3 ATOM A C6 DT 1 3 1.00 1 C 23.84 -7.334 21.766 1.507 A P DA 4 ATOM A P DA 1 4 1.00 1 P 26.35 -7.804 20.397 1.799 A OP1 DA 4 ATOM A OP1 DA 1 4 1.00 1 O 21.20 -8.210 22.765 0.854 A OP2 DA 4 ATOM A OP2 DA 1 4 1.00 1 O 23.33 -6.890 22.414 2.922 A O5' DA 4 ATOM A O5' DA 1 4 1.00 1 O 24.73 -5.878 21.764 3.693 A C5' DA 4 ATOM A C5' DA 1 4 1.00 1 C 21.11 -5.235 22.845 4.536 A C4' DA 4 ATOM A C4' DA 1 4 1.00 1 C 18.05 -4.313 23.620 3.731 A O4' DA 4 ATOM A O4' DA 1 4 1.00 1 O 18.06 -6.210 23.852 5.123 A C3' DA 4 ATOM A C3' DA 1 4 1.00 1 C 15.24 -5.722 24.263 6.373 A O3' DA 4 ATOM A O3' DA 1 4 1.00 1 O 19.69 -6.218 24.972 4.104 A C2' DA 4 ATOM A C2' DA 1 4 1.00 1 C 15.25 -4.789 24.972 3.626 A C1' DA 4 ATOM A C1' DA 1 4 1.00 1 C 15.36 -4.561 25.296 2.204 A N9 DA 4 ATOM A N9 DA 1 4 1.00 1 N 17.12 -5.463 25.059 1.187 A C8 DA 4 ATOM A C8 DA 1 4 1.00 1 C 16.28 -5.003 25.443 0.028 A N7 DA 4 ATOM A N7 DA 1 4 1.00 1 N 14.82 -3.748 25.954 0.263 A C5 DA 4 ATOM A C5 DA 1 4 1.00 1 C 14.95 -2.764 26.515 -0.565 A C6 DA 4 ATOM A C6 DA 1 4 1.00 1 C 16.33 -2.936 26.648 -1.894 A N6 DA 4 ATOM A N6 DA 1 4 1.00 1 N 11.94 -1.627 26.922 0.013 A N1 DA 4 ATOM A N1 DA 1 4 1.00 1 N 10.89 -1.421 26.801 1.352 A C2 DA 4 ATOM A C2 DA 1 4 1.00 1 C 11.29 -2.300 26.282 2.212 A N3 DA 4 ATOM A N3 DA 1 4 1.00 1 N 11.05 -3.439 25.876 1.622 A C4 DA 4 ATOM A C4 DA 1 4 1.00 1 C 14.97 -6.472 25.286 7.345 A P DG 5 ATOM A P DG 1 5 1.00 1 P 15.25 -6.156 24.921 8.745 A OP1 DG 5 ATOM A OP1 DG 1 5 1.00 1 O 20.20 -7.912 25.341 6.926 A OP2 DG 5 ATOM A OP2 DG 1 5 1.00 1 O 13.50 -5.792 26.671 6.958 A O5' DG 5 ATOM A O5' DG 1 5 1.00 1 O 14.66 -4.371 26.823 7.223 A C5' DG 5 ATOM A C5' DG 1 5 1.00 1 C 11.79 -3.965 28.182 6.702 A C4' DG 5 ATOM A C4' DG 1 5 1.00 1 C 11.83 -3.944 28.165 5.259 A O4' DG 5 ATOM A O4' DG 1 5 1.00 1 O 13.56 -4.919 29.309 7.074 A C3' DG 5 ATOM A C3' DG 1 5 1.00 1 C 14.47 -4.188 30.434 7.475 A O3' DG 5 ATOM A O3' DG 1 5 1.00 1 O 13.04 -5.701 29.590 5.802 A C2' DG 5 ATOM A C2' DG 1 5 1.00 1 C 11.35 -4.592 29.379 4.796 A C1' DG 5 ATOM A C1' DG 1 5 1.00 1 C 13.37 -4.966 29.133 3.405 A N9 DG 5 ATOM A N9 DG 1 5 1.00 1 N 12.34 -6.113 28.543 2.921 A C8 DG 5 ATOM A C8 DG 1 5 1.00 1 C 16.40 -6.135 28.475 1.615 A N7 DG 5 ATOM A N7 DG 1 5 1.00 1 N 14.18 -4.938 29.052 1.223 A C5 DG 5 ATOM A C5 DG 1 5 1.00 1 C 9.92 -4.377 29.275 -0.071 A C6 DG 5 ATOM A C6 DG 1 5 1.00 1 C 17.24 -4.891 28.973 -1.146 A O6 DG 5 ATOM A O6 DG 1 5 1.00 1 O 13.30 -3.128 29.897 -0.034 A N1 DG 5 ATOM A N1 DG 1 5 1.00 1 N 13.73 -2.481 30.268 1.117 A C2 DG 5 ATOM A C2 DG 1 5 1.00 1 C 13.40 -1.293 30.852 0.973 A N2 DG 5 ATOM A N2 DG 1 5 1.00 1 N 12.79 -2.990 30.068 2.334 A N3 DG 5 ATOM A N3 DG 1 5 1.00 1 N 12.72 -4.202 29.465 2.303 A C4 DG 5 ATOM A C4 DG 1 5 1.00 1 C 17.10 -4.837 31.620 8.368 A P DG 6 ATOM A P DG 1 6 1.00 1 P 26.22 -3.917 31.859 9.499 A OP1 DG 6 ATOM A OP1 DG 1 6 1.00 1 O 20.65 -6.272 31.333 8.552 A OP2 DG 6 ATOM A OP2 DG 1 6 1.00 1 O 19.43 -4.748 32.855 7.358 A O5' DG 6 ATOM A O5' DG 1 6 1.00 1 O 22.37 -3.651 33.446 6.727 A C5' DG 6 ATOM A C5' DG 1 6 1.00 1 C 13.93 -3.911 34.917 6.444 A C4' DG 6 ATOM A C4' DG 1 6 1.00 1 C 16.12 -4.552 35.067 5.138 A O4' DG 6 ATOM A O4' DG 1 6 1.00 1 O 15.70 -4.834 35.650 7.386 A C3' DG 6 ATOM A C3' DG 1 6 1.00 1 C 25.58 -4.201 36.881 7.728 A O3' DG 6 ATOM A O3' DG 1 6 1.00 1 O 16.57 -6.123 35.892 6.636 A C2' DG 6 ATOM A C2' DG 1 6 1.00 1 C 18.26 -5.627 36.004 5.216 A C1' DG 6 ATOM A C1' DG 1 6 1.00 1 C 11.82 -6.556 35.603 4.142 A N9 DG 6 ATOM A N9 DG 1 6 1.00 1 N 11.97 -7.795 35.033 4.200 A C8 DG 6 ATOM A C8 DG 1 6 1.00 1 C 12.75 -8.332 34.814 3.012 A N7 DG 6 ATOM A N7 DG 1 6 1.00 1 N 12.21 -7.378 35.273 2.132 A C5 DG 6 ATOM A C5 DG 1 6 1.00 1 C 14.28 -7.394 35.300 0.709 A C6 DG 6 ATOM A C6 DG 1 6 1.00 1 C 13.18 -8.315 34.893 -0.005 A O6 DG 6 ATOM A O6 DG 1 6 1.00 1 O 11.55 -6.233 35.846 0.172 A N1 DG 6 ATOM A N1 DG 1 6 1.00 1 N 12.88 -5.175 36.314 0.934 A C2 DG 6 ATOM A C2 DG 1 6 1.00 1 C 13.91 -4.123 36.814 0.246 A N2 DG 6 ATOM A N2 DG 1 6 1.00 1 N 13.12 -5.162 36.289 2.253 A N3 DG 6 ATOM A N3 DG 1 6 1.00 1 N 11.91 -6.268 35.768 2.791 A C4 DG 6 ATOM A C4 DG 1 6 1.00 1 C 25.71 6.770 20.109 1.361 A C1 DR1 7 HETATM B C1 DR1 2 1.00 1 C 23.90 6.535 19.971 2.713 A C2 DR1 7 HETATM B C2 DR1 2 1.00 1 C 20.22 5.388 19.390 3.220 A C3 DR1 7 HETATM B C3 DR1 2 1.00 1 C 25.45 4.391 18.904 2.382 A C4 DR1 7 HETATM B C4 DR1 2 1.00 1 C 20.62 4.605 19.029 1.017 A C5 DR1 7 HETATM B C5 DR1 2 1.00 1 C 18.57 3.615 18.549 0.206 A C6 DR1 7 HETATM B C6 DR1 2 1.00 1 C 15.83 3.862 18.693 -1.122 A C7 DR1 7 HETATM B C7 DR1 2 1.00 1 C 29.58 3.015 18.280 -2.109 A N8 DR1 7 HETATM B N8 DR1 2 1.00 1 N 17.01 3.642 18.736 -3.369 A C9 DR1 7 HETATM B C9 DR1 2 1.00 1 C 29.51 3.260 18.679 -4.749 A C10 DR1 7 HETATM B C10 DR1 2 1.00 1 C 31.59 4.073 19.216 -5.743 A C11 DR1 7 HETATM B C11 DR1 2 1.00 1 C 24.69 5.293 19.818 -5.418 A C12 DR1 7 HETATM B C12 DR1 2 1.00 1 C 33.06 5.648 19.883 -4.062 A C13 DR1 7 HETATM B C13 DR1 2 1.00 1 C 17.92 4.864 19.306 -3.065 A C14 DR1 7 HETATM B C14 DR1 2 1.00 1 C 23.16 5.015 19.274 -1.650 A C15 DR1 7 HETATM B C15 DR1 2 1.00 1 C 32.15 5.899 19.706 -0.865 A N16 DR1 7 HETATM B N16 DR1 2 1.00 1 N 20.93 5.761 19.617 0.511 A C17 DR1 7 HETATM B C17 DR1 2 1.00 1 C 32.64 7.127 20.326 -1.393 A C18 DR1 7 HETATM B C18 DR1 2 1.00 1 C 11.05 6.177 12.157 -3.512 A C1 DR1 8 HETATM C C1 DR1 2 0.50 1 C 11.84 6.703 12.428 -4.765 A C2 DR1 8 HETATM C C2 DR1 2 0.50 1 C 12.54 7.923 13.095 -4.901 A C3 DR1 8 HETATM C C3 DR1 2 0.50 1 C 17.87 8.614 13.487 -3.758 A C4 DR1 8 HETATM C C4 DR1 2 0.50 1 C 9.77 8.085 13.214 -2.504 A C5 DR1 8 HETATM C C5 DR1 2 0.50 1 C 11.10 8.816 13.627 -1.417 A C6 DR1 8 HETATM C C6 DR1 2 0.50 1 C 13.41 8.291 13.357 -0.193 A C7 DR1 8 HETATM C C7 DR1 2 0.50 1 C 16.65 8.880 13.694 0.991 A N8 DR1 8 HETATM C N8 DR1 2 0.50 1 N 11.90 7.940 13.211 2.018 A C9 DR1 8 HETATM C C9 DR1 2 0.50 1 C 12.78 7.956 13.246 3.460 A C10 DR1 8 HETATM C C10 DR1 2 0.50 1 C 14.52 6.902 12.681 4.157 A C11 DR1 8 HETATM C C11 DR1 2 0.50 1 C 22.68 5.822 12.102 3.497 A C12 DR1 8 HETATM C C12 DR1 2 0.50 1 C 21.89 5.804 12.084 2.097 A C13 DR1 8 HETATM C C13 DR1 2 0.50 1 C 17.92 6.858 12.639 1.380 A C14 DR1 8 HETATM C C14 DR1 2 0.50 1 C 16.57 7.081 12.698 -0.029 A C15 DR1 8 HETATM C C15 DR1 2 0.50 1 C 18.82 6.443 12.335 -1.056 A N16 DR1 8 HETATM C N16 DR1 2 0.50 1 N 13.41 6.877 12.555 -2.359 A C17 DR1 8 HETATM C C17 DR1 2 0.50 1 C 20.52 5.157 11.633 -0.898 A C18 DR1 8 HETATM C C18 DR1 2 0.50 1 C 12.22 7.794 14.316 -8.286 A O HOH 3001 HETATM D O HOH 3 1.00 1 O 21.82 -1.938 31.905 11.038 A O HOH 3002 HETATM D O HOH 3 1.00 1 O 25.25 -3.065 16.295 -9.846 A O HOH 3003 HETATM D O HOH 3 1.00 1 O 25.87 -4.908 25.676 -3.596 A O HOH 3004 HETATM D O HOH 3 1.00 1 O 26.02 -8.602 27.384 5.069 A O HOH 3005 HETATM D O HOH 3 1.00 1 O 33.78 -3.347 26.508 -6.542 A O HOH 3006 HETATM D O HOH 3 1.00 1 O 26.75 1.132 25.057 -6.109 A O HOH 3007 HETATM D O HOH 3 1.00 1 O 37.31 -11.563 34.033 2.677 A O HOH 3008 HETATM D O HOH 3 1.00 1 O 26.75 4.835 17.006 -10.808 A O HOH 3009 HETATM D O HOH 3 1.00 1 O 36.58 -6.805 26.691 -2.295 A O HOH 3010 HETATM D O HOH 3 1.00 1 O 32.80 -10.887 34.124 -0.199 A O HOH 3011 HETATM D O HOH 3 1.00 1 O 31.26 -7.795 25.088 -1.537 A O HOH 3012 HETATM D O HOH 3 1.00 1 O 38.10 -8.516 21.293 5.991 A O HOH 3013 HETATM D O HOH 3 1.00 1 O 43.93 -10.364 15.623 0.057 A O HOH 3014 HETATM D O HOH 3 1.00 1 O 40.52 -4.040 40.006 2.038 A O HOH 3015 HETATM D O HOH 3 0.50 1 O 25.90 -0.909 18.454 -0.177 A O HOH 3016 HETATM D O HOH 3 1.00 1 O 32.49 -2.843 18.876 -10.645 A O HOH 3017 HETATM D O HOH 3 1.00 1 O 28.77 -4.788 16.768 -7.382 A O HOH 3018 HETATM D O HOH 3 1.00 1 O 46.48 -14.670 20.245 1.051 A O HOH 3019 HETATM D O HOH 3 1.00 1 O 46.69 -8.212 21.573 -3.289 A O HOH 3020 HETATM D O HOH 3 1.00 1 O 32.22 -9.132 18.705 -0.410 A O HOH 3021 HETATM D O HOH 3 1.00 1 O 25.54 -0.907 21.304 -7.899 A O HOH 3022 HETATM D O HOH 3 1.00 1 O 24.80 5.006 23.241 -6.690 A O HOH 3023 HETATM D O HOH 3 1.00 1 O 25.15 3.446 22.062 -8.835 A O HOH 3026 HETATM D O HOH 3 1.00 1 O 27.45 -1.069 37.369 0.395 A O HOH 3027 HETATM D O HOH 3 1.00 1 O 31.00 -5.319 21.568 -4.851 A O HOH 3028 HETATM D O HOH 3 1.00 1 O 44.10 -5.304 18.090 2.346 A O HOH 3029 HETATM D O HOH 3 1.00 1 O 41.61 -6.377 17.952 -7.531 A O HOH 3030 HETATM D O HOH 3 1.00 1 O 47.56 -9.694 24.285 6.160 A O HOH 3031 HETATM D O HOH 3 1.00 1 O 34.06 -7.321 33.227 10.111 A O HOH 3032 HETATM D O HOH 3 1.00 1 O 36.63 -6.518 31.062 12.544 A O HOH 3033 HETATM D O HOH 3 1.00 1 O 29.75 -8.576 27.509 0.576 A O HOH 3034 HETATM D O HOH 3 1.00 1 O 44.92 -10.047 25.497 8.263 A O HOH 3035 HETATM D O HOH 3 1.00 1 O 33.81 -6.332 26.741 10.463 A O HOH 3036 HETATM D O HOH 3 1.00 1 O 56.61 -9.458 28.773 11.175 A O HOH 3037 HETATM D O HOH 3 1.00 1 O 43.93 -6.605 18.617 -0.633 A O HOH 3038 HETATM D O HOH 3 1.00 1 O 30.02 -2.253 16.235 -1.386 A O HOH 3039 HETATM D O HOH 3 1.00 1 O 0.033378 0.019271 0.000000 0.000000 0.038541 0.000000 0.000000 0.000000 0.025221 0.000000 0.000000 0.000000 Lisgarten, J.N. Coll, M. Portugal, J. Wright, C.W. Aymami, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 29.960 29.960 39.650 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C16 H12 N2 232.280 5-METHYL-5H-INDOLO[3,2-B]QUINOLINE CRYPTOLEPINE non-polymer C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H Y 108 N C Y 109 N C Y 110 N C Y 111 N C Y 112 N C Y 113 N C Y 114 N C Y 115 N N Y 116 N C Y 117 N C Y 118 N C Y 119 N C Y 120 N C Y 121 N C Y 122 N C Y 123 N N Y 124 N C N 125 N C N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N O N 139 N P N 140 N O N 141 N O N 142 N O N 143 N C N 144 R C N 145 N O N 146 S C N 147 N O N 148 N C N 149 R C N 150 N N N 151 N C N 152 N O N 153 N N N 154 N C N 155 N O N 156 N C N 157 N C N 158 N C N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N O N 175 N H N 176 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing Y 113 N doub Y 114 N sing N 115 N sing Y 116 N sing N 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing Y 122 N sing Y 123 N doub Y 124 N doub N 125 N sing Y 126 N sing Y 127 N sing Y 128 N doub Y 129 N sing Y 130 N sing Y 131 N doub N 132 N sing Y 133 N sing N 134 N sing Y 135 N doub N 136 N sing Y 137 N sing N 138 N sing Y 139 N doub Y 140 N sing Y 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing US Nat.Struct.Biol. NSBIEW 2024 1072-8368 9 57 60 10.1038/nsb729 11731803 The antimalarial and cytotoxic drug cryptolepine intercalates into DNA at cytosine-cytosine sites. 2002 10.2210/pdb1k9g/pdb pdb_00001k9g 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 120 1 IMAGE PLATE 2000-05-26 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.1 1.0 BW7A EMBL/DESY, HAMBURG 1.1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 1809.217 5'-D(*CP*CP*TP*AP*GP*G)-3' 1 syn polymer 232.280 5-METHYL-5H-INDOLO[3,2-B]QUINOLINE 2 syn non-polymer 18.015 water 37 nat water no no (DC)(DC)(DT)(DA)(DG)(DG) CCTAGG A polydeoxyribonucleotide n n n n n n 1 2.72 54.76 VAPOR DIFFUSION, HANGING DROP 6.5 Magnesium acetate, MES, Ammonium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 1.602 1 19 A 1 A 6 -0.939 A_DC1:DG6_A 1 -10.972 0.186 0.119 -0.190 -9.873 1 19 A 2 A 5 -1.057 A_DC2:DG5_A 2 -1.689 0.159 0.409 -0.140 3.578 1 20 A 3 A 4 -1.593 A_DT3:DA4_A 3 -12.349 -0.050 -0.003 -0.202 -3.578 1 20 A 4 A 3 -1.593 A_DA4:DT3_A 4 -12.349 0.050 -0.003 -0.202 9.873 1 19 A 5 A 2 -1.057 A_DG5:DC2_A 5 -1.689 -0.159 0.409 -0.140 -1.602 1 19 A 6 A 1 -0.939 A_DG6:DC1_A 6 -10.972 -0.186 0.119 -0.190 6.920 24.066 A A 1 2 1.485 A A 6 5 6.943 0.619 0.113 0.397 AA_DC1DC2:DG5DG6_AA 1 -1.938 4.654 23.982 0.529 -1.592 2.872 27.500 A A 2 3 8.306 A A 5 4 2.977 3.923 -0.468 0.112 AA_DC2DT3:DA4DG5_AA 2 3.812 -8.072 26.960 -0.633 1.829 3.225 50.945 A A 3 4 -4.267 A A 4 3 3.357 -3.668 0.000 1.853 AA_DT3DA4:DT3DA4_AA 3 0.000 0.000 50.822 2.412 0.000 2.872 27.500 A A 4 5 8.306 A A 3 2 2.977 3.923 0.468 0.112 AA_DA4DG5:DC2DT3_AA 4 -3.812 8.072 26.960 -0.633 -1.829 6.920 24.066 A A 5 6 1.485 A A 2 1 6.943 0.619 -0.113 0.397 AA_DG5DG6:DC1DC2_AA 5 1.938 -4.654 23.982 0.529 1.592 chem_comp_atom chem_comp_bond database_2 diffrn_source software struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2001-11-30 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _diffrn_source.pdbx_synchrotron_site _software.classification _software.name _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2001-10-29 REL DR1 5-METHYL-5H-INDOLO[3,2-B]QUINOLINE HOH water DR1 7 2 DR1 DR1 7 A DR1 8 2 DR1 DR1 8 A HOH 3001 3 HOH HOH 3001 A HOH 3002 3 HOH HOH 3002 A HOH 3003 3 HOH HOH 3003 A HOH 3004 3 HOH HOH 3004 A HOH 3005 3 HOH HOH 3005 A HOH 3006 3 HOH HOH 3006 A HOH 3007 3 HOH HOH 3007 A HOH 3008 3 HOH HOH 3008 A HOH 3009 3 HOH HOH 3009 A HOH 3010 3 HOH HOH 3010 A HOH 3011 3 HOH HOH 3011 A HOH 3012 3 HOH HOH 3012 A HOH 3013 3 HOH HOH 3013 A HOH 3014 3 HOH HOH 3014 A HOH 3015 3 HOH HOH 3015 A HOH 3016 3 HOH HOH 3016 A HOH 3017 3 HOH HOH 3017 A HOH 3018 3 HOH HOH 3018 A HOH 3019 3 HOH HOH 3019 A HOH 3020 3 HOH HOH 3020 A HOH 3021 3 HOH HOH 3021 A HOH 3022 3 HOH HOH 3022 A HOH 3023 3 HOH HOH 3023 A HOH 3026 3 HOH HOH 3026 A HOH 3027 3 HOH HOH 3027 A HOH 3028 3 HOH HOH 3028 A HOH 3029 3 HOH HOH 3029 A HOH 3030 3 HOH HOH 3030 A HOH 3031 3 HOH HOH 3031 A HOH 3032 3 HOH HOH 3032 A HOH 3033 3 HOH HOH 3033 A HOH 3034 3 HOH HOH 3034 A HOH 3035 3 HOH HOH 3035 A HOH 3036 3 HOH HOH 3036 A HOH 3037 3 HOH HOH 3037 A HOH 3038 3 HOH HOH 3038 A HOH 3039 3 HOH HOH 3039 A CYT 1 n 1 DC 1 A CYT 2 n 2 DC 2 A THY 3 n 3 DT 3 A ADE 4 n 4 DA 4 A GUA 5 n 5 DG 5 A GUA 6 n 6 DG 6 A 0.2090000 0.2080000 0.2270000 167 author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4_675 -x+1,-y+2,z crystal symmetry operation 0.0000000000 51.8922421948 0.0000000000 1 A A O O HOH HOH 3018 3030 1.99 1 A A O O HOH HOH 3010 3012 2.03 1 A A C5' O DT HOH 3 3038 2.13 1 -4.64 0.70 108.00 103.36 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 3.66 0.50 119.90 123.56 A A A C2 N3 C4 DC DC DC 2 2 2 N 1 3.12 0.50 121.00 124.12 A A A C5 C6 N1 DC DC DC 2 2 2 N 1 -5.36 0.80 102.40 97.04 A A A C3' C2' C1' DT DT DT 3 3 3 N 1 -4.23 0.60 119.00 114.77 A A A C4 C5 C7 DT DT DT 3 3 3 N 1 8.29 1.20 119.70 127.99 A A A C3' O3' P DT DT DA 3 3 4 Y 1 -4.96 0.70 108.00 103.04 A A A O4' C1' N9 DA DA DA 4 4 4 N 1 -4.61 0.50 129.30 124.69 A A A N1 C2 N3 DA DA DA 4 4 4 N 1 10.12 1.60 120.90 131.02 A A A P O5' C5' DG DG DG 6 6 6 N 1 A A O O HOH HOH 3026 3029 2.12 1_555 3_564 0.2270000 0.2080000 0.2090000 0.2090000 1.4 10. 167 3356 3356 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT Engh & Huber 1.4 10. 37 193 36 120 0 0.011 0.023 17.7 1.4 20 1K9G 3543 3356 2 1 0.0380000 1 29.1 87.3 0.3300000 1.4 1.45 2.4 292 73.2 phasing AMoRE refinement SHELXL-97 data collection MAR345 data scaling SCALEPACK Crystal Structure of the Complex of Cryptolepine-d(CCTAGG)2 1 N N 2 N N 2 N N 3 N N The double helix is generated by the operation -x,-y+2,z. hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 A DG 6 A N1 DG 6 4_675 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 A DG 6 A O6 DG 6 4_675 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 A DG 6 A N2 DG 6 4_675 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 A DG 5 A N1 DG 5 4_675 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 A DG 5 A O6 DG 5 4_675 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 A DG 5 A N2 DG 5 4_675 hydrog WATSON-CRICK A DT 3 A N3 DT 3 1_555 A DA 4 A N1 DA 4 4_675 hydrog WATSON-CRICK A DT 3 A O4 DT 3 1_555 A DA 4 A N6 DA 4 4_675 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 A DT 3 A N3 DT 3 4_675 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 A DT 3 A O4 DT 3 4_675 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 A DC 2 A N3 DC 2 4_675 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 A DC 2 A O2 DC 2 4_675 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 A DC 2 A N4 DC 2 4_675 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 A DC 1 A N3 DC 1 4_675 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 A DC 1 A O2 DC 1 4_675 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 A DC 1 A N4 DC 1 4_675 DNA DNA intercalator complex, DNA 1K9G PDB 1 1K9G 1 6 1K9G 1 6 1K9G A 1 1 6 BINDING SITE FOR RESIDUE DR1 A 7 A DR1 7 Software 4 BINDING SITE FOR RESIDUE DR1 A 8 A DR1 8 Software 6 A DC 1 A DC 1 4 1_555 A DC 2 A DC 2 4 1_555 A DG 5 A DG 5 4 4_675 A DG 6 A DG 6 4 4_675 A DC 1 A DC 1 6 1_555 A DC 1 A DC 1 6 4_665 A DG 6 A DG 6 6 4_675 A DG 6 A DG 6 6 1_545 A HOH 3015 D HOH 6 4_675 A HOH 3015 D HOH 6 1_545 172 P 64