1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Pires, J.R. Taha-Nejad, F. Toepert, F. Ast, T. Hoffmuller, U. Schneider-Mergener, J. Kuhne, R. Macias, M.J. Oschkinat, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 314 1147 1156 10.1006/jmbi.2000.5199 11743730 Solution structures of the YAP65 WW domain and the variant L30 K in complex with the peptides GTPPPPYTVG, N-(n-octyl)-GPPPY and PLPPY and the application of peptide libraries reveal a minimal binding epitope. 2001 10.2210/pdb1k9r/pdb pdb_00001k9r 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 4682.166 65 kDa Yes-associated protein Wild type WW domain 1 syn polymer 611.729 WW domain binding protein-1 residues 149-153 P47L 1 syn polymer YAP65 WBP-1 no no FEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRK FEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRK A polypeptide(L) no yes (ACE)PLPPY XPLPPY B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Other Other Data collection Database references Derived calculations 1 0 2001-12-28 1 1 2008-04-27 1 2 2011-07-13 1 3 2012-12-12 1 4 2013-03-13 1 5 2021-11-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details 1JMQ contains YAP65 (L30K mutant) WW domain in Complexed with GTPPPPYTVG peptide 1K9Q contains YAP65 WW domain complexed with N-(n-octyl)-GPPPY-NH2 1E0M contains Prototype Ww Domain 1EG3 contains Dystrophin Ww Domain Fragment 1EG4 contains Dystrophin Ww Domain Fragment In Complexed With beta-Dystroglycan Peptide 1I5H contains Rnedd4 Wwiii Domain-Renac Bp2 Peptide Complex RCSB Y PDBJ 2001-10-30 REL REL This sequence was synthetically obtained, by semiautomated spot synthesis in a cellulose support. sample This sequence was synthetically obtained by spot synthesis in a cellulose support. 9606 Homo sapiens sample structures with the lowest energy 200 20 2D NOESY 2D NOESY 100mM NaCl 6 1 atm 288 K 100mM NaCl 6 1 atm 288 K 2000K, 200 runs, Force constants for NOEs 50kcal mol-1 rad-2, 330 restraints Simulated anneling 1 lowest energy phosphate buffer 10mM, NaCl 100mM, DTT 0.1mM, EDTA 0.1mM, pH 6, WW domain 1.2mM, ligand 2.4mM H2O (10% D2O) phosphate buffer 10mM, NaCl 100mM, DTT 0.1mM, EDTA 0.1mM, pH 6, WW domain 1.2mM, ligand 2.4mM D2O Bruker processing XwinNMR 2.6 Kraulis, P.J. data analysis ANSIG 3.3 Brunger, A.T. refinement X-PLOR 3.1 600 Bruker DRX 750 Bruker DMX PHE 5 n 1 PHE 5 A GLU 6 n 2 GLU 6 A ILE 7 n 3 ILE 7 A PRO 8 n 4 PRO 8 A ASP 9 n 5 ASP 9 A ASP 10 n 6 ASP 10 A VAL 11 n 7 VAL 11 A PRO 12 n 8 PRO 12 A LEU 13 n 9 LEU 13 A PRO 14 n 10 PRO 14 A ALA 15 n 11 ALA 15 A GLY 16 n 12 GLY 16 A TRP 17 n 13 TRP 17 A GLU 18 n 14 GLU 18 A MET 19 n 15 MET 19 A ALA 20 n 16 ALA 20 A LYS 21 n 17 LYS 21 A THR 22 n 18 THR 22 A SER 23 n 19 SER 23 A SER 24 n 20 SER 24 A GLY 25 n 21 GLY 25 A GLN 26 n 22 GLN 26 A ARG 27 n 23 ARG 27 A TYR 28 n 24 TYR 28 A PHE 29 n 25 PHE 29 A LEU 30 n 26 LEU 30 A ASN 31 n 27 ASN 31 A HIS 32 n 28 HIS 32 A ILE 33 n 29 ILE 33 A ASP 34 n 30 ASP 34 A GLN 35 n 31 GLN 35 A THR 36 n 32 THR 36 A THR 37 n 33 THR 37 A THR 38 n 34 THR 38 A TRP 39 n 35 TRP 39 A GLN 40 n 36 GLN 40 A ASP 41 n 37 ASP 41 A PRO 42 n 38 PRO 42 A ARG 43 n 39 ARG 43 A LYS 44 n 40 LYS 44 A ACE 45 n 1 ACE 45 B PRO 46 n 2 PRO 46 B LEU 47 n 3 LEU 47 B PRO 48 n 4 PRO 48 B PRO 49 n 5 PRO 49 B TYR 50 n 6 TYR 50 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 18 A N GLU 14 A O LEU 30 A O LEU 26 A N ASN 31 A N ASN 27 A O THR 36 A O THR 32 1 A A OD1 H ASN ASP 31 34 1.58 10 A A OD1 H ASN ASP 31 34 1.58 14 A A OD1 H ASN ASP 31 34 1.58 15 A A OD1 H ASN ASP 31 34 1.57 1 A GLU 6 53.30 -176.14 1 A ASP 10 -127.68 -82.87 1 A PRO 14 -72.02 -163.11 1 A THR 22 -134.48 -158.97 1 A SER 23 47.40 -91.74 1 A SER 24 -150.35 -42.20 1 A GLN 35 54.52 88.36 1 B LEU 47 61.39 139.15 2 A ILE 7 53.60 97.06 2 A ASP 10 -92.92 -81.69 2 A PRO 14 -72.30 -165.70 2 A ALA 20 -150.96 -151.25 2 A SER 23 47.33 -91.85 2 A SER 24 -153.02 -42.07 2 A GLN 35 50.48 74.77 2 B LEU 47 -174.50 113.27 3 A GLU 6 -110.04 50.19 3 A PRO 8 -72.29 -167.27 3 A ASP 9 -119.93 66.38 3 A ASP 10 -53.33 -75.80 3 A PRO 12 -73.35 -86.50 3 A PRO 14 -72.24 -164.93 3 A ALA 20 -153.50 -152.24 3 A SER 23 -68.45 89.26 3 A SER 24 175.64 -32.24 3 A GLN 35 49.90 76.86 3 A GLN 40 -73.33 -157.76 3 B LEU 47 -175.68 109.80 3 B PRO 49 -72.71 -164.65 4 A GLU 6 53.23 -178.20 4 A ASP 9 -115.33 52.86 4 A PRO 12 -76.88 -159.00 4 A PRO 14 -72.34 -164.83 4 A ALA 20 -153.22 -151.61 4 A SER 24 177.70 -33.57 4 A GLN 35 50.51 76.21 4 A GLN 40 -79.89 -155.66 4 A ARG 43 53.23 79.41 4 B LEU 47 -174.95 129.92 4 B PRO 49 -72.63 -162.97 5 A GLU 6 53.30 -166.79 5 A PRO 8 -71.62 -87.53 5 A PRO 12 -71.35 -158.85 5 A PRO 14 -72.94 -162.78 5 A SER 23 45.75 -149.62 5 A GLN 26 -173.18 135.82 5 A GLN 35 35.28 76.63 6 A GLU 6 -175.00 87.30 6 A ASP 9 47.21 26.02 6 A PRO 14 -72.75 -163.04 6 A ALA 20 -151.92 -121.09 6 A THR 22 -142.40 -159.18 6 A SER 23 -53.42 170.04 6 A SER 24 70.46 -0.03 6 A GLN 35 50.02 75.98 6 A GLN 40 -112.48 -165.33 6 A ARG 43 -69.99 99.42 6 B LEU 47 -174.96 119.79 6 B PRO 49 -72.74 -168.37 7 A ASP 10 -131.16 -41.11 7 A PRO 12 -75.92 -158.98 7 A PRO 14 -72.68 -164.25 7 A THR 22 -136.31 -159.47 7 A SER 23 45.66 -148.88 7 A GLN 26 -176.01 136.03 7 A ILE 33 -91.65 -60.05 7 A GLN 35 50.47 74.58 7 A GLN 40 -96.37 -159.50 7 A PRO 42 -72.42 -163.19 7 A ARG 43 57.24 -86.65 7 B PRO 49 -84.59 47.79 8 A PRO 8 -72.42 -168.01 8 A ASP 9 -117.03 57.07 8 A ASP 10 -81.43 -81.43 8 A PRO 12 -78.02 -85.37 8 A PRO 14 -72.18 -163.50 8 A ALA 20 -150.38 -150.54 8 A SER 23 45.42 -92.06 8 A SER 24 -155.01 -41.62 8 A GLN 35 35.94 74.37 8 A PRO 42 -72.46 -163.03 8 B LEU 47 -175.02 120.44 9 A ASP 10 -72.85 -81.83 9 A PRO 12 -73.18 -88.00 9 A ALA 20 -151.05 -132.37 9 A SER 23 43.44 -91.56 9 A SER 24 -121.23 -81.47 9 A GLN 35 50.65 70.08 9 A ASP 41 58.83 151.43 9 A ARG 43 -70.61 -161.00 9 B LEU 47 -175.61 113.84 9 B PRO 49 -72.47 -163.18 10 A PRO 8 -86.77 34.07 10 A ASP 10 -172.88 60.97 10 A LEU 13 57.33 165.42 10 A SER 23 45.48 -92.15 10 A SER 24 -154.16 -42.05 10 A LEU 30 -55.29 99.70 10 A GLN 35 54.43 77.09 10 A GLN 40 -175.16 131.86 10 A ASP 41 -177.88 -59.77 10 A ARG 43 53.56 94.36 11 A PRO 8 -70.90 -86.96 11 A PRO 12 -72.31 -159.17 11 A PRO 14 -73.18 -162.58 11 A ALA 20 -154.54 -150.99 11 A GLN 35 48.77 72.80 11 A GLN 40 -168.57 52.25 11 A ASP 41 -170.05 61.07 11 A PRO 42 -71.83 -87.39 12 A GLU 6 53.18 90.91 12 A SER 23 45.28 -93.98 12 A GLN 35 50.93 73.02 12 A TRP 39 -69.31 -154.35 12 A ASP 41 -177.61 -59.85 12 A ARG 43 54.60 174.42 12 B LEU 47 -174.51 116.60 13 A GLU 6 53.27 80.42 13 A ALA 20 -148.71 -150.54 13 A THR 22 -145.52 -159.19 13 A SER 23 47.29 -146.31 13 A GLN 26 -177.05 136.36 13 A GLN 35 47.01 78.51 13 A GLN 40 -82.17 -158.18 13 A ARG 43 51.82 -168.62 14 A GLU 6 53.28 178.08 14 A ASP 9 -151.55 47.41 14 A ASP 10 -67.97 -80.13 14 A PRO 14 -72.32 -168.19 14 A ALA 20 -155.67 -151.02 14 A THR 22 -129.08 -161.41 14 A SER 23 -58.62 178.67 14 A SER 24 73.12 -54.23 14 A GLN 35 55.86 87.18 14 A GLN 40 -175.49 131.25 14 A ASP 41 -178.04 -59.67 14 A ARG 43 53.42 179.23 15 A GLU 6 -117.95 61.60 15 A ILE 7 53.18 95.70 15 A ASP 9 45.96 78.08 15 A PRO 12 -71.76 -159.06 15 A PRO 14 -73.20 -162.97 15 A ALA 20 -153.29 -152.21 15 A SER 23 -69.33 89.44 15 A SER 24 178.64 -34.12 15 A GLN 35 34.97 92.14 15 A GLN 40 -173.96 -174.50 15 B PRO 49 -77.82 -162.58 16 A PRO 8 -71.49 -165.57 16 A ASP 10 -92.97 -85.16 16 A PRO 12 -81.16 -158.69 16 A ALA 20 -151.88 -121.77 16 A SER 23 45.18 -92.07 16 A SER 24 -156.56 -41.56 16 A GLN 35 49.00 73.80 16 A PRO 42 -72.37 -167.85 16 B LEU 47 62.08 129.92 17 A ASP 9 45.99 74.52 17 A PRO 14 -73.08 -162.56 17 A THR 22 -129.90 -161.94 17 A SER 23 42.94 -145.76 17 A GLN 26 -176.23 132.52 17 A ILE 33 -91.33 -61.82 17 A GLN 40 -74.29 -163.97 17 A ARG 43 53.26 -159.51 17 B PRO 49 -73.14 -164.86 18 A PRO 8 -80.99 -88.03 18 A ASP 9 -95.95 33.84 18 A PRO 12 -73.70 -87.29 18 A PRO 14 -72.17 -162.33 18 A ALA 20 -154.42 -153.26 18 A SER 23 -68.47 88.74 18 A SER 24 177.97 -33.69 18 A GLN 35 50.46 76.04 18 A GLN 40 -168.77 29.98 18 A ARG 43 -166.19 28.72 18 B LEU 47 -175.15 130.52 18 B PRO 49 -73.10 -167.61 19 A ASP 9 -156.75 36.98 19 A PRO 12 -76.76 -85.98 19 A PRO 14 -72.64 -165.83 19 A ALA 20 -155.66 -153.41 19 A SER 24 178.96 -34.17 19 A GLN 40 -176.06 116.92 19 A ASP 41 -178.05 -59.74 19 A ARG 43 53.31 76.89 19 B LEU 47 -175.20 129.44 20 A GLU 6 -152.97 46.17 20 A ILE 7 53.37 96.76 20 A PRO 8 -71.62 -87.53 20 A ASP 9 -91.99 -63.18 20 A ASP 10 -171.75 -58.84 20 A PRO 12 -73.87 -87.12 20 A ALA 20 -152.85 -122.78 20 A THR 22 -147.23 -159.99 20 A SER 23 47.64 -146.47 20 A GLN 26 -177.17 133.55 20 A GLN 40 -175.72 149.13 20 A ASP 41 -178.31 -59.63 20 A PRO 42 -71.03 -87.45 YAP65 WW domain complexed to Acetyl-PLPPY 1 N N 2 N N covale 1.305 both B ACE 45 B C ACE 1 1_555 B PRO 46 B N PRO 2 1_555 STRUCTURAL PROTEIN WW domain, YAP65, beta-sheet proteins, ligands, proline-rich peptides, STRUCTURAL PROTEIN YAP1_HUMAN UNP 1 165 P46937 FEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRK AAD10950 GB 2 149 4205084 PPPPY 165 204 1K9R 5 44 P46937 A 1 1 40 149 153 1K9R 46 50 4205084 B 2 2 6 2 PRO engineered mutation LEU 47 1K9R B 4205084 GB 150 3 3 anti-parallel anti-parallel A TRP 17 A TRP 13 A THR 22 A THR 18 A GLN 26 A GLN 22 A ASN 31 A ASN 27 A THR 36 A THR 32 A THR 38 A THR 34