1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Pires, J.R.
Taha-Nejad, F.
Toepert, F.
Ast, T.
Hoffmuller, U.
Schneider-Mergener, J.
Kuhne, R.
Macias, M.J.
Oschkinat, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
314
1147
1156
10.1006/jmbi.2000.5199
11743730
Solution structures of the YAP65 WW domain and the variant L30 K in complex with the peptides GTPPPPYTVG, N-(n-octyl)-GPPPY and PLPPY and the application of peptide libraries reveal a minimal binding epitope.
2001
10.2210/pdb1k9r/pdb
pdb_00001k9r
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
4682.166
65 kDa Yes-associated protein
Wild type WW domain
1
syn
polymer
611.729
WW domain binding protein-1
residues 149-153
P47L
1
syn
polymer
YAP65
WBP-1
no
no
FEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRK
FEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRK
A
polypeptide(L)
no
yes
(ACE)PLPPY
XPLPPY
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Other
Other
Data collection
Database references
Derived calculations
1
0
2001-12-28
1
1
2008-04-27
1
2
2011-07-13
1
3
2012-12-12
1
4
2013-03-13
1
5
2021-11-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
1JMQ contains YAP65 (L30K mutant) WW domain in Complexed with GTPPPPYTVG peptide
1K9Q contains YAP65 WW domain complexed with N-(n-octyl)-GPPPY-NH2
1E0M contains Prototype Ww Domain
1EG3 contains Dystrophin Ww Domain Fragment
1EG4 contains Dystrophin Ww Domain Fragment In Complexed With beta-Dystroglycan Peptide
1I5H contains Rnedd4 Wwiii Domain-Renac Bp2 Peptide Complex
RCSB
Y
PDBJ
2001-10-30
REL
REL
This sequence was synthetically obtained, by semiautomated spot synthesis in a cellulose support.
sample
This sequence was synthetically obtained by spot synthesis in a cellulose support.
9606
Homo sapiens
sample
structures with the lowest energy
200
20
2D NOESY
2D NOESY
100mM NaCl
6
1
atm
288
K
100mM NaCl
6
1
atm
288
K
2000K, 200 runs, Force constants for NOEs 50kcal mol-1 rad-2, 330 restraints
Simulated anneling
1
lowest energy
phosphate buffer 10mM, NaCl 100mM, DTT 0.1mM, EDTA 0.1mM, pH 6, WW domain 1.2mM, ligand 2.4mM
H2O (10% D2O)
phosphate buffer 10mM, NaCl 100mM, DTT 0.1mM, EDTA 0.1mM, pH 6, WW domain 1.2mM, ligand 2.4mM
D2O
Bruker
processing
XwinNMR
2.6
Kraulis, P.J.
data analysis
ANSIG
3.3
Brunger, A.T.
refinement
X-PLOR
3.1
600
Bruker
DRX
750
Bruker
DMX
PHE
5
n
1
PHE
5
A
GLU
6
n
2
GLU
6
A
ILE
7
n
3
ILE
7
A
PRO
8
n
4
PRO
8
A
ASP
9
n
5
ASP
9
A
ASP
10
n
6
ASP
10
A
VAL
11
n
7
VAL
11
A
PRO
12
n
8
PRO
12
A
LEU
13
n
9
LEU
13
A
PRO
14
n
10
PRO
14
A
ALA
15
n
11
ALA
15
A
GLY
16
n
12
GLY
16
A
TRP
17
n
13
TRP
17
A
GLU
18
n
14
GLU
18
A
MET
19
n
15
MET
19
A
ALA
20
n
16
ALA
20
A
LYS
21
n
17
LYS
21
A
THR
22
n
18
THR
22
A
SER
23
n
19
SER
23
A
SER
24
n
20
SER
24
A
GLY
25
n
21
GLY
25
A
GLN
26
n
22
GLN
26
A
ARG
27
n
23
ARG
27
A
TYR
28
n
24
TYR
28
A
PHE
29
n
25
PHE
29
A
LEU
30
n
26
LEU
30
A
ASN
31
n
27
ASN
31
A
HIS
32
n
28
HIS
32
A
ILE
33
n
29
ILE
33
A
ASP
34
n
30
ASP
34
A
GLN
35
n
31
GLN
35
A
THR
36
n
32
THR
36
A
THR
37
n
33
THR
37
A
THR
38
n
34
THR
38
A
TRP
39
n
35
TRP
39
A
GLN
40
n
36
GLN
40
A
ASP
41
n
37
ASP
41
A
PRO
42
n
38
PRO
42
A
ARG
43
n
39
ARG
43
A
LYS
44
n
40
LYS
44
A
ACE
45
n
1
ACE
45
B
PRO
46
n
2
PRO
46
B
LEU
47
n
3
LEU
47
B
PRO
48
n
4
PRO
48
B
PRO
49
n
5
PRO
49
B
TYR
50
n
6
TYR
50
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
18
A
N
GLU
14
A
O
LEU
30
A
O
LEU
26
A
N
ASN
31
A
N
ASN
27
A
O
THR
36
A
O
THR
32
1
A
A
OD1
H
ASN
ASP
31
34
1.58
10
A
A
OD1
H
ASN
ASP
31
34
1.58
14
A
A
OD1
H
ASN
ASP
31
34
1.58
15
A
A
OD1
H
ASN
ASP
31
34
1.57
1
A
GLU
6
53.30
-176.14
1
A
ASP
10
-127.68
-82.87
1
A
PRO
14
-72.02
-163.11
1
A
THR
22
-134.48
-158.97
1
A
SER
23
47.40
-91.74
1
A
SER
24
-150.35
-42.20
1
A
GLN
35
54.52
88.36
1
B
LEU
47
61.39
139.15
2
A
ILE
7
53.60
97.06
2
A
ASP
10
-92.92
-81.69
2
A
PRO
14
-72.30
-165.70
2
A
ALA
20
-150.96
-151.25
2
A
SER
23
47.33
-91.85
2
A
SER
24
-153.02
-42.07
2
A
GLN
35
50.48
74.77
2
B
LEU
47
-174.50
113.27
3
A
GLU
6
-110.04
50.19
3
A
PRO
8
-72.29
-167.27
3
A
ASP
9
-119.93
66.38
3
A
ASP
10
-53.33
-75.80
3
A
PRO
12
-73.35
-86.50
3
A
PRO
14
-72.24
-164.93
3
A
ALA
20
-153.50
-152.24
3
A
SER
23
-68.45
89.26
3
A
SER
24
175.64
-32.24
3
A
GLN
35
49.90
76.86
3
A
GLN
40
-73.33
-157.76
3
B
LEU
47
-175.68
109.80
3
B
PRO
49
-72.71
-164.65
4
A
GLU
6
53.23
-178.20
4
A
ASP
9
-115.33
52.86
4
A
PRO
12
-76.88
-159.00
4
A
PRO
14
-72.34
-164.83
4
A
ALA
20
-153.22
-151.61
4
A
SER
24
177.70
-33.57
4
A
GLN
35
50.51
76.21
4
A
GLN
40
-79.89
-155.66
4
A
ARG
43
53.23
79.41
4
B
LEU
47
-174.95
129.92
4
B
PRO
49
-72.63
-162.97
5
A
GLU
6
53.30
-166.79
5
A
PRO
8
-71.62
-87.53
5
A
PRO
12
-71.35
-158.85
5
A
PRO
14
-72.94
-162.78
5
A
SER
23
45.75
-149.62
5
A
GLN
26
-173.18
135.82
5
A
GLN
35
35.28
76.63
6
A
GLU
6
-175.00
87.30
6
A
ASP
9
47.21
26.02
6
A
PRO
14
-72.75
-163.04
6
A
ALA
20
-151.92
-121.09
6
A
THR
22
-142.40
-159.18
6
A
SER
23
-53.42
170.04
6
A
SER
24
70.46
-0.03
6
A
GLN
35
50.02
75.98
6
A
GLN
40
-112.48
-165.33
6
A
ARG
43
-69.99
99.42
6
B
LEU
47
-174.96
119.79
6
B
PRO
49
-72.74
-168.37
7
A
ASP
10
-131.16
-41.11
7
A
PRO
12
-75.92
-158.98
7
A
PRO
14
-72.68
-164.25
7
A
THR
22
-136.31
-159.47
7
A
SER
23
45.66
-148.88
7
A
GLN
26
-176.01
136.03
7
A
ILE
33
-91.65
-60.05
7
A
GLN
35
50.47
74.58
7
A
GLN
40
-96.37
-159.50
7
A
PRO
42
-72.42
-163.19
7
A
ARG
43
57.24
-86.65
7
B
PRO
49
-84.59
47.79
8
A
PRO
8
-72.42
-168.01
8
A
ASP
9
-117.03
57.07
8
A
ASP
10
-81.43
-81.43
8
A
PRO
12
-78.02
-85.37
8
A
PRO
14
-72.18
-163.50
8
A
ALA
20
-150.38
-150.54
8
A
SER
23
45.42
-92.06
8
A
SER
24
-155.01
-41.62
8
A
GLN
35
35.94
74.37
8
A
PRO
42
-72.46
-163.03
8
B
LEU
47
-175.02
120.44
9
A
ASP
10
-72.85
-81.83
9
A
PRO
12
-73.18
-88.00
9
A
ALA
20
-151.05
-132.37
9
A
SER
23
43.44
-91.56
9
A
SER
24
-121.23
-81.47
9
A
GLN
35
50.65
70.08
9
A
ASP
41
58.83
151.43
9
A
ARG
43
-70.61
-161.00
9
B
LEU
47
-175.61
113.84
9
B
PRO
49
-72.47
-163.18
10
A
PRO
8
-86.77
34.07
10
A
ASP
10
-172.88
60.97
10
A
LEU
13
57.33
165.42
10
A
SER
23
45.48
-92.15
10
A
SER
24
-154.16
-42.05
10
A
LEU
30
-55.29
99.70
10
A
GLN
35
54.43
77.09
10
A
GLN
40
-175.16
131.86
10
A
ASP
41
-177.88
-59.77
10
A
ARG
43
53.56
94.36
11
A
PRO
8
-70.90
-86.96
11
A
PRO
12
-72.31
-159.17
11
A
PRO
14
-73.18
-162.58
11
A
ALA
20
-154.54
-150.99
11
A
GLN
35
48.77
72.80
11
A
GLN
40
-168.57
52.25
11
A
ASP
41
-170.05
61.07
11
A
PRO
42
-71.83
-87.39
12
A
GLU
6
53.18
90.91
12
A
SER
23
45.28
-93.98
12
A
GLN
35
50.93
73.02
12
A
TRP
39
-69.31
-154.35
12
A
ASP
41
-177.61
-59.85
12
A
ARG
43
54.60
174.42
12
B
LEU
47
-174.51
116.60
13
A
GLU
6
53.27
80.42
13
A
ALA
20
-148.71
-150.54
13
A
THR
22
-145.52
-159.19
13
A
SER
23
47.29
-146.31
13
A
GLN
26
-177.05
136.36
13
A
GLN
35
47.01
78.51
13
A
GLN
40
-82.17
-158.18
13
A
ARG
43
51.82
-168.62
14
A
GLU
6
53.28
178.08
14
A
ASP
9
-151.55
47.41
14
A
ASP
10
-67.97
-80.13
14
A
PRO
14
-72.32
-168.19
14
A
ALA
20
-155.67
-151.02
14
A
THR
22
-129.08
-161.41
14
A
SER
23
-58.62
178.67
14
A
SER
24
73.12
-54.23
14
A
GLN
35
55.86
87.18
14
A
GLN
40
-175.49
131.25
14
A
ASP
41
-178.04
-59.67
14
A
ARG
43
53.42
179.23
15
A
GLU
6
-117.95
61.60
15
A
ILE
7
53.18
95.70
15
A
ASP
9
45.96
78.08
15
A
PRO
12
-71.76
-159.06
15
A
PRO
14
-73.20
-162.97
15
A
ALA
20
-153.29
-152.21
15
A
SER
23
-69.33
89.44
15
A
SER
24
178.64
-34.12
15
A
GLN
35
34.97
92.14
15
A
GLN
40
-173.96
-174.50
15
B
PRO
49
-77.82
-162.58
16
A
PRO
8
-71.49
-165.57
16
A
ASP
10
-92.97
-85.16
16
A
PRO
12
-81.16
-158.69
16
A
ALA
20
-151.88
-121.77
16
A
SER
23
45.18
-92.07
16
A
SER
24
-156.56
-41.56
16
A
GLN
35
49.00
73.80
16
A
PRO
42
-72.37
-167.85
16
B
LEU
47
62.08
129.92
17
A
ASP
9
45.99
74.52
17
A
PRO
14
-73.08
-162.56
17
A
THR
22
-129.90
-161.94
17
A
SER
23
42.94
-145.76
17
A
GLN
26
-176.23
132.52
17
A
ILE
33
-91.33
-61.82
17
A
GLN
40
-74.29
-163.97
17
A
ARG
43
53.26
-159.51
17
B
PRO
49
-73.14
-164.86
18
A
PRO
8
-80.99
-88.03
18
A
ASP
9
-95.95
33.84
18
A
PRO
12
-73.70
-87.29
18
A
PRO
14
-72.17
-162.33
18
A
ALA
20
-154.42
-153.26
18
A
SER
23
-68.47
88.74
18
A
SER
24
177.97
-33.69
18
A
GLN
35
50.46
76.04
18
A
GLN
40
-168.77
29.98
18
A
ARG
43
-166.19
28.72
18
B
LEU
47
-175.15
130.52
18
B
PRO
49
-73.10
-167.61
19
A
ASP
9
-156.75
36.98
19
A
PRO
12
-76.76
-85.98
19
A
PRO
14
-72.64
-165.83
19
A
ALA
20
-155.66
-153.41
19
A
SER
24
178.96
-34.17
19
A
GLN
40
-176.06
116.92
19
A
ASP
41
-178.05
-59.74
19
A
ARG
43
53.31
76.89
19
B
LEU
47
-175.20
129.44
20
A
GLU
6
-152.97
46.17
20
A
ILE
7
53.37
96.76
20
A
PRO
8
-71.62
-87.53
20
A
ASP
9
-91.99
-63.18
20
A
ASP
10
-171.75
-58.84
20
A
PRO
12
-73.87
-87.12
20
A
ALA
20
-152.85
-122.78
20
A
THR
22
-147.23
-159.99
20
A
SER
23
47.64
-146.47
20
A
GLN
26
-177.17
133.55
20
A
GLN
40
-175.72
149.13
20
A
ASP
41
-178.31
-59.63
20
A
PRO
42
-71.03
-87.45
YAP65 WW domain complexed to Acetyl-PLPPY
1
N
N
2
N
N
covale
1.305
both
B
ACE
45
B
C
ACE
1
1_555
B
PRO
46
B
N
PRO
2
1_555
STRUCTURAL PROTEIN
WW domain, YAP65, beta-sheet proteins, ligands, proline-rich peptides, STRUCTURAL PROTEIN
YAP1_HUMAN
UNP
1
165
P46937
FEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRK
AAD10950
GB
2
149
4205084
PPPPY
165
204
1K9R
5
44
P46937
A
1
1
40
149
153
1K9R
46
50
4205084
B
2
2
6
2
PRO
engineered mutation
LEU
47
1K9R
B
4205084
GB
150
3
3
anti-parallel
anti-parallel
A
TRP
17
A
TRP
13
A
THR
22
A
THR
18
A
GLN
26
A
GLN
22
A
ASN
31
A
ASN
27
A
THR
36
A
THR
32
A
THR
38
A
THR
34