0.007559
0.000000
0.000687
0.000000
0.014797
0.000000
0.000000
0.000000
0.014946
0.00000
0.00000
0.00000
Arndt, J.W.
Hao, B.
Ramakrishnan, V.
Cheng, T.
Chan, S.I.
Chan, M.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
95.20
90.00
132.300
67.582
67.185
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Pb 2
207.200
LEAD (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
PB
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
O
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
R
C
N
296
N
O
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
N
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
N
346
N
O
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
UK
Structure
STRUE6
2005
0969-2126
10
215
224
10.1016/S0969-2126(02)00698-6
11839307
Crystal Structure of a Novel Carboxypeptidase from the Hyperthermophilic Archaeon Pyrococcus furiosus
2002
10.2210/pdb1ka4/pdb
pdb_00001ka4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2000-01-01
ADSC QUANTUM 4
KOHZU double crystal
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
X4A
NSLS
1.0000
SYNCHROTRON
NSLS BEAMLINE X4A
59127.664
M32 carboxypeptidase
1
nat
polymer
207.200
LEAD (II) ION
1
syn
non-polymer
18.015
water
83
nat
water
no
no
MEEVFQNETIKQILAKYRRIWAIGHAQSVLGWDLEVNMPKEGILERSVAQGELSVLSHELLLHPEFVNLVEKAKGLENLN
EYERGIVRVLDRSIRIARAFPPEFIREVSETTSLATKAWEEAKAKDDFSKFEPWLDKIISLAKRAAEYLGYEEEPYDALL
DLYEEGLRTRDVEKMFEVLEKKLKPLLDKILEEGKVPREHPLEKEKYEREWMERVNLWILQKFGFPLGTRARLDVSAHPF
TTEFGIRDVRITTRYEGYDFRRTILSTVHEFGHALYELQQDERFMFTPIAGGVSLGIHESQSRFWENIIGRSKEFVELIY
PVLKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYNFHILLRFKLERLMVSEEIKAKDLPEMWNDEMERLLGIRPR
KYSEGILQDIHWAHGSIGYFPTYTIGTLLSAQLYYHIKKDIPDFEEKVAKAEFDPIKAWLREKIHRWGSIYPPKELLKKA
IGEDMDAEYFVRWVKEKYL
MEEVFQNETIKQILAKYRRIWAIGHAQSVLGWDLEVNMPKEGILERSVAQGELSVLSHELLLHPEFVNLVEKAKGLENLN
EYERGIVRVLDRSIRIARAFPPEFIREVSETTSLATKAWEEAKAKDDFSKFEPWLDKIISLAKRAAEYLGYEEEPYDALL
DLYEEGLRTRDVEKMFEVLEKKLKPLLDKILEEGKVPREHPLEKEKYEREWMERVNLWILQKFGFPLGTRARLDVSAHPF
TTEFGIRDVRITTRYEGYDFRRTILSTVHEFGHALYELQQDERFMFTPIAGGVSLGIHESQSRFWENIIGRSKEFVELIY
PVLKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYNFHILLRFKLERLMVSEEIKAKDLPEMWNDEMERLLGIRPR
KYSEGILQDIHWAHGSIGYFPTYTIGTLLSAQLYYHIKKDIPDFEEKVAKAEFDPIKAWLREKIHRWGSIYPPKELLKKA
IGEDMDAEYFVRWVKEKYL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Pyrococcus
sample
2261
Pyrococcus furiosus
1
2.53
51.35
VAPOR DIFFUSION, HANGING DROP
8.5
PEG 4000, TRIS, magnesium chloride, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-11-06
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Structure of Pyrococcus furiosus carboxypeptidase Apo-Yb
Structure of Pyrococcus furiosus carboxypeptidase Apo-Mg
SEQUENCE
An appropriate sequence database
reference was not available at the
time of processing.
RCSB
Y
RCSB
2001-10-31
REL
PB
LEAD (II) ION
HOH
water
PB
601
2
PB
PB
601
A
TIP
1
3
HOH
HOH
602
A
TIP
2
3
HOH
HOH
603
A
TIP
3
3
HOH
HOH
604
A
TIP
4
3
HOH
HOH
605
A
TIP
5
3
HOH
HOH
606
A
TIP
6
3
HOH
HOH
607
A
TIP
7
3
HOH
HOH
608
A
TIP
8
3
HOH
HOH
609
A
TIP
9
3
HOH
HOH
610
A
TIP
10
3
HOH
HOH
611
A
TIP
11
3
HOH
HOH
612
A
TIP
12
3
HOH
HOH
613
A
TIP
13
3
HOH
HOH
614
A
TIP
14
3
HOH
HOH
615
A
TIP
15
3
HOH
HOH
616
A
TIP
16
3
HOH
HOH
617
A
TIP
17
3
HOH
HOH
618
A
TIP
18
3
HOH
HOH
619
A
TIP
19
3
HOH
HOH
620
A
TIP
20
3
HOH
HOH
621
A
TIP
21
3
HOH
HOH
622
A
TIP
22
3
HOH
HOH
623
A
TIP
23
3
HOH
HOH
624
A
TIP
24
3
HOH
HOH
625
A
TIP
25
3
HOH
HOH
626
A
TIP
26
3
HOH
HOH
627
A
TIP
27
3
HOH
HOH
628
A
TIP
28
3
HOH
HOH
629
A
TIP
29
3
HOH
HOH
630
A
TIP
30
3
HOH
HOH
631
A
TIP
31
3
HOH
HOH
632
A
TIP
32
3
HOH
HOH
633
A
TIP
33
3
HOH
HOH
634
A
TIP
34
3
HOH
HOH
635
A
TIP
35
3
HOH
HOH
636
A
TIP
36
3
HOH
HOH
637
A
TIP
37
3
HOH
HOH
638
A
TIP
38
3
HOH
HOH
639
A
TIP
39
3
HOH
HOH
640
A
TIP
40
3
HOH
HOH
641
A
TIP
41
3
HOH
HOH
642
A
TIP
42
3
HOH
HOH
643
A
TIP
43
3
HOH
HOH
644
A
TIP
44
3
HOH
HOH
645
A
TIP
45
3
HOH
HOH
646
A
TIP
46
3
HOH
HOH
647
A
TIP
47
3
HOH
HOH
648
A
TIP
48
3
HOH
HOH
649
A
TIP
49
3
HOH
HOH
650
A
TIP
50
3
HOH
HOH
651
A
TIP
51
3
HOH
HOH
652
A
TIP
52
3
HOH
HOH
653
A
TIP
53
3
HOH
HOH
654
A
TIP
54
3
HOH
HOH
655
A
TIP
55
3
HOH
HOH
656
A
TIP
56
3
HOH
HOH
657
A
TIP
57
3
HOH
HOH
658
A
TIP
58
3
HOH
HOH
659
A
TIP
59
3
HOH
HOH
660
A
TIP
60
3
HOH
HOH
661
A
TIP
61
3
HOH
HOH
662
A
TIP
62
3
HOH
HOH
663
A
TIP
63
3
HOH
HOH
664
A
TIP
64
3
HOH
HOH
665
A
TIP
65
3
HOH
HOH
666
A
TIP
66
3
HOH
HOH
667
A
TIP
67
3
HOH
HOH
668
A
TIP
68
3
HOH
HOH
669
A
TIP
69
3
HOH
HOH
670
A
TIP
70
3
HOH
HOH
671
A
TIP
71
3
HOH
HOH
672
A
TIP
72
3
HOH
HOH
673
A
TIP
73
3
HOH
HOH
674
A
TIP
74
3
HOH
HOH
675
A
TIP
75
3
HOH
HOH
676
A
TIP
76
3
HOH
HOH
677
A
TIP
77
3
HOH
HOH
678
A
TIP
79
3
HOH
HOH
679
A
TIP
80
3
HOH
HOH
680
A
TIP
81
3
HOH
HOH
681
A
TIP
82
3
HOH
HOH
682
A
TIP
83
3
HOH
HOH
683
A
TIP
84
3
HOH
HOH
684
A
n
1
1
A
n
2
2
A
GLU
3
n
3
GLU
3
A
VAL
4
n
4
VAL
4
A
PHE
5
n
5
PHE
5
A
GLN
6
n
6
GLN
6
A
ASN
7
n
7
ASN
7
A
GLU
8
n
8
GLU
8
A
THR
9
n
9
THR
9
A
ILE
10
n
10
ILE
10
A
LYS
11
n
11
LYS
11
A
GLN
12
n
12
GLN
12
A
ILE
13
n
13
ILE
13
A
LEU
14
n
14
LEU
14
A
ALA
15
n
15
ALA
15
A
LYS
16
n
16
LYS
16
A
TYR
17
n
17
TYR
17
A
ARG
18
n
18
ARG
18
A
ARG
19
n
19
ARG
19
A
ILE
20
n
20
ILE
20
A
TRP
21
n
21
TRP
21
A
ALA
22
n
22
ALA
22
A
ILE
23
n
23
ILE
23
A
GLY
24
n
24
GLY
24
A
HIS
25
n
25
HIS
25
A
ALA
26
n
26
ALA
26
A
GLN
27
n
27
GLN
27
A
SER
28
n
28
SER
28
A
VAL
29
n
29
VAL
29
A
LEU
30
n
30
LEU
30
A
GLY
31
n
31
GLY
31
A
TRP
32
n
32
TRP
32
A
ASP
33
n
33
ASP
33
A
LEU
34
n
34
LEU
34
A
GLU
35
n
35
GLU
35
A
VAL
36
n
36
VAL
36
A
ASN
37
n
37
ASN
37
A
MET
38
n
38
MET
38
A
PRO
39
n
39
PRO
39
A
LYS
40
n
40
LYS
40
A
GLU
41
n
41
GLU
41
A
GLY
42
n
42
GLY
42
A
ILE
43
n
43
ILE
43
A
LEU
44
n
44
LEU
44
A
GLU
45
n
45
GLU
45
A
ARG
46
n
46
ARG
46
A
SER
47
n
47
SER
47
A
VAL
48
n
48
VAL
48
A
ALA
49
n
49
ALA
49
A
GLN
50
n
50
GLN
50
A
GLY
51
n
51
GLY
51
A
GLU
52
n
52
GLU
52
A
LEU
53
n
53
LEU
53
A
SER
54
n
54
SER
54
A
VAL
55
n
55
VAL
55
A
LEU
56
n
56
LEU
56
A
SER
57
n
57
SER
57
A
HIS
58
n
58
HIS
58
A
GLU
59
n
59
GLU
59
A
LEU
60
n
60
LEU
60
A
LEU
61
n
61
LEU
61
A
LEU
62
n
62
LEU
62
A
HIS
63
n
63
HIS
63
A
PRO
64
n
64
PRO
64
A
GLU
65
n
65
GLU
65
A
PHE
66
n
66
PHE
66
A
VAL
67
n
67
VAL
67
A
ASN
68
n
68
ASN
68
A
LEU
69
n
69
LEU
69
A
VAL
70
n
70
VAL
70
A
GLU
71
n
71
GLU
71
A
LYS
72
n
72
LYS
72
A
ALA
73
n
73
ALA
73
A
LYS
74
n
74
LYS
74
A
GLY
75
n
75
GLY
75
A
LEU
76
n
76
LEU
76
A
GLU
77
n
77
GLU
77
A
ASN
78
n
78
ASN
78
A
LEU
79
n
79
LEU
79
A
ASN
80
n
80
ASN
80
A
GLU
81
n
81
GLU
81
A
TYR
82
n
82
TYR
82
A
GLU
83
n
83
GLU
83
A
ARG
84
n
84
ARG
84
A
GLY
85
n
85
GLY
85
A
ILE
86
n
86
ILE
86
A
VAL
87
n
87
VAL
87
A
ARG
88
n
88
ARG
88
A
VAL
89
n
89
VAL
89
A
LEU
90
n
90
LEU
90
A
ASP
91
n
91
ASP
91
A
ARG
92
n
92
ARG
92
A
SER
93
n
93
SER
93
A
ILE
94
n
94
ILE
94
A
ARG
95
n
95
ARG
95
A
ILE
96
n
96
ILE
96
A
ALA
97
n
97
ALA
97
A
ARG
98
n
98
ARG
98
A
ALA
99
n
99
ALA
99
A
PHE
100
n
100
PHE
100
A
PRO
101
n
101
PRO
101
A
PRO
102
n
102
PRO
102
A
GLU
103
n
103
GLU
103
A
PHE
104
n
104
PHE
104
A
ILE
105
n
105
ILE
105
A
ARG
106
n
106
ARG
106
A
GLU
107
n
107
GLU
107
A
VAL
108
n
108
VAL
108
A
SER
109
n
109
SER
109
A
GLU
110
n
110
GLU
110
A
THR
111
n
111
THR
111
A
THR
112
n
112
THR
112
A
SER
113
n
113
SER
113
A
LEU
114
n
114
LEU
114
A
ALA
115
n
115
ALA
115
A
THR
116
n
116
THR
116
A
LYS
117
n
117
LYS
117
A
ALA
118
n
118
ALA
118
A
TRP
119
n
119
TRP
119
A
GLU
120
n
120
GLU
120
A
GLU
121
n
121
GLU
121
A
ALA
122
n
122
ALA
122
A
LYS
123
n
123
LYS
123
A
ALA
124
n
124
ALA
124
A
LYS
125
n
125
LYS
125
A
ASP
126
n
126
ASP
126
A
ASP
127
n
127
ASP
127
A
PHE
128
n
128
PHE
128
A
SER
129
n
129
SER
129
A
LYS
130
n
130
LYS
130
A
PHE
131
n
131
PHE
131
A
GLU
132
n
132
GLU
132
A
PRO
133
n
133
PRO
133
A
TRP
134
n
134
TRP
134
A
LEU
135
n
135
LEU
135
A
ASP
136
n
136
ASP
136
A
LYS
137
n
137
LYS
137
A
ILE
138
n
138
ILE
138
A
ILE
139
n
139
ILE
139
A
SER
140
n
140
SER
140
A
LEU
141
n
141
LEU
141
A
ALA
142
n
142
ALA
142
A
LYS
143
n
143
LYS
143
A
ARG
144
n
144
ARG
144
A
ALA
145
n
145
ALA
145
A
ALA
146
n
146
ALA
146
A
GLU
147
n
147
GLU
147
A
TYR
148
n
148
TYR
148
A
LEU
149
n
149
LEU
149
A
GLY
150
n
150
GLY
150
A
TYR
151
n
151
TYR
151
A
GLU
152
n
152
GLU
152
A
GLU
153
n
153
GLU
153
A
GLU
154
n
154
GLU
154
A
PRO
155
n
155
PRO
155
A
TYR
156
n
156
TYR
156
A
ASP
157
n
157
ASP
157
A
ALA
158
n
158
ALA
158
A
LEU
159
n
159
LEU
159
A
LEU
160
n
160
LEU
160
A
ASP
161
n
161
ASP
161
A
LEU
162
n
162
LEU
162
A
TYR
163
n
163
TYR
163
A
GLU
164
n
164
GLU
164
A
GLU
165
n
165
GLU
165
A
GLY
166
n
166
GLY
166
A
LEU
167
n
167
LEU
167
A
ARG
168
n
168
ARG
168
A
THR
169
n
169
THR
169
A
ARG
170
n
170
ARG
170
A
ASP
171
n
171
ASP
171
A
VAL
172
n
172
VAL
172
A
GLU
173
n
173
GLU
173
A
LYS
174
n
174
LYS
174
A
MET
175
n
175
MET
175
A
PHE
176
n
176
PHE
176
A
GLU
177
n
177
GLU
177
A
VAL
178
n
178
VAL
178
A
LEU
179
n
179
LEU
179
A
GLU
180
n
180
GLU
180
A
LYS
181
n
181
LYS
181
A
LYS
182
n
182
LYS
182
A
LEU
183
n
183
LEU
183
A
LYS
184
n
184
LYS
184
A
PRO
185
n
185
PRO
185
A
LEU
186
n
186
LEU
186
A
LEU
187
n
187
LEU
187
A
ASP
188
n
188
ASP
188
A
LYS
189
n
189
LYS
189
A
ILE
190
n
190
ILE
190
A
LEU
191
n
191
LEU
191
A
GLU
192
n
192
GLU
192
A
GLU
193
n
193
GLU
193
A
GLY
194
n
194
GLY
194
A
LYS
195
n
195
LYS
195
A
VAL
196
n
196
VAL
196
A
PRO
197
n
197
PRO
197
A
ARG
198
n
198
ARG
198
A
GLU
199
n
199
GLU
199
A
HIS
200
n
200
HIS
200
A
PRO
201
n
201
PRO
201
A
LEU
202
n
202
LEU
202
A
GLU
203
n
203
GLU
203
A
LYS
204
n
204
LYS
204
A
GLU
205
n
205
GLU
205
A
LYS
206
n
206
LYS
206
A
TYR
207
n
207
TYR
207
A
GLU
208
n
208
GLU
208
A
ARG
209
n
209
ARG
209
A
GLU
210
n
210
GLU
210
A
TRP
211
n
211
TRP
211
A
MET
212
n
212
MET
212
A
GLU
213
n
213
GLU
213
A
ARG
214
n
214
ARG
214
A
VAL
215
n
215
VAL
215
A
ASN
216
n
216
ASN
216
A
LEU
217
n
217
LEU
217
A
TRP
218
n
218
TRP
218
A
ILE
219
n
219
ILE
219
A
LEU
220
n
220
LEU
220
A
GLN
221
n
221
GLN
221
A
LYS
222
n
222
LYS
222
A
PHE
223
n
223
PHE
223
A
GLY
224
n
224
GLY
224
A
PHE
225
n
225
PHE
225
A
PRO
226
n
226
PRO
226
A
LEU
227
n
227
LEU
227
A
GLY
228
n
228
GLY
228
A
THR
229
n
229
THR
229
A
ARG
230
n
230
ARG
230
A
ALA
231
n
231
ALA
231
A
ARG
232
n
232
ARG
232
A
LEU
233
n
233
LEU
233
A
ASP
234
n
234
ASP
234
A
VAL
235
n
235
VAL
235
A
SER
236
n
236
SER
236
A
ALA
237
n
237
ALA
237
A
HIS
238
n
238
HIS
238
A
PRO
239
n
239
PRO
239
A
PHE
240
n
240
PHE
240
A
THR
241
n
241
THR
241
A
THR
242
n
242
THR
242
A
GLU
243
n
243
GLU
243
A
PHE
244
n
244
PHE
244
A
GLY
245
n
245
GLY
245
A
ILE
246
n
246
ILE
246
A
ARG
247
n
247
ARG
247
A
ASP
248
n
248
ASP
248
A
VAL
249
n
249
VAL
249
A
ARG
250
n
250
ARG
250
A
ILE
251
n
251
ILE
251
A
THR
252
n
252
THR
252
A
THR
253
n
253
THR
253
A
ARG
254
n
254
ARG
254
A
TYR
255
n
255
TYR
255
A
GLU
256
n
256
GLU
256
A
GLY
257
n
257
GLY
257
A
TYR
258
n
258
TYR
258
A
ASP
259
n
259
ASP
259
A
PHE
260
n
260
PHE
260
A
ARG
261
n
261
ARG
261
A
ARG
262
n
262
ARG
262
A
THR
263
n
263
THR
263
A
ILE
264
n
264
ILE
264
A
LEU
265
n
265
LEU
265
A
SER
266
n
266
SER
266
A
THR
267
n
267
THR
267
A
VAL
268
n
268
VAL
268
A
HIS
269
n
269
HIS
269
A
GLU
270
n
270
GLU
270
A
PHE
271
n
271
PHE
271
A
GLY
272
n
272
GLY
272
A
HIS
273
n
273
HIS
273
A
ALA
274
n
274
ALA
274
A
LEU
275
n
275
LEU
275
A
TYR
276
n
276
TYR
276
A
GLU
277
n
277
GLU
277
A
LEU
278
n
278
LEU
278
A
GLN
279
n
279
GLN
279
A
GLN
280
n
280
GLN
280
A
ASP
281
n
281
ASP
281
A
GLU
282
n
282
GLU
282
A
ARG
283
n
283
ARG
283
A
PHE
284
n
284
PHE
284
A
MET
285
n
285
MET
285
A
PHE
286
n
286
PHE
286
A
THR
287
n
287
THR
287
A
PRO
288
n
288
PRO
288
A
ILE
289
n
289
ILE
289
A
ALA
290
n
290
ALA
290
A
GLY
291
n
291
GLY
291
A
GLY
292
n
292
GLY
292
A
VAL
293
n
293
VAL
293
A
SER
294
n
294
SER
294
A
LEU
295
n
295
LEU
295
A
GLY
296
n
296
GLY
296
A
ILE
297
n
297
ILE
297
A
HIS
298
n
298
HIS
298
A
GLU
299
n
299
GLU
299
A
SER
300
n
300
SER
300
A
GLN
301
n
301
GLN
301
A
SER
302
n
302
SER
302
A
ARG
303
n
303
ARG
303
A
PHE
304
n
304
PHE
304
A
TRP
305
n
305
TRP
305
A
GLU
306
n
306
GLU
306
A
ASN
307
n
307
ASN
307
A
ILE
308
n
308
ILE
308
A
ILE
309
n
309
ILE
309
A
GLY
310
n
310
GLY
310
A
ARG
311
n
311
ARG
311
A
SER
312
n
312
SER
312
A
LYS
313
n
313
LYS
313
A
GLU
314
n
314
GLU
314
A
PHE
315
n
315
PHE
315
A
VAL
316
n
316
VAL
316
A
GLU
317
n
317
GLU
317
A
LEU
318
n
318
LEU
318
A
ILE
319
n
319
ILE
319
A
TYR
320
n
320
TYR
320
A
PRO
321
n
321
PRO
321
A
VAL
322
n
322
VAL
322
A
LEU
323
n
323
LEU
323
A
LYS
324
n
324
LYS
324
A
GLU
325
n
325
GLU
325
A
ASN
326
n
326
ASN
326
A
LEU
327
n
327
LEU
327
A
PRO
328
n
328
PRO
328
A
PHE
329
n
329
PHE
329
A
MET
330
n
330
MET
330
A
SER
331
n
331
SER
331
A
ASN
332
n
332
ASN
332
A
TYR
333
n
333
TYR
333
A
THR
334
n
334
THR
334
A
PRO
335
n
335
PRO
335
A
GLU
336
n
336
GLU
336
A
ASP
337
n
337
ASP
337
A
VAL
338
n
338
VAL
338
A
TYR
339
n
339
TYR
339
A
LEU
340
n
340
LEU
340
A
TYR
341
n
341
TYR
341
A
PHE
342
n
342
PHE
342
A
ASN
343
n
343
ASN
343
A
ILE
344
n
344
ILE
344
A
VAL
345
n
345
VAL
345
A
ARG
346
n
346
ARG
346
A
PRO
347
n
347
PRO
347
A
ASP
348
n
348
ASP
348
A
PHE
349
n
349
PHE
349
A
ILE
350
n
350
ILE
350
A
ARG
351
n
351
ARG
351
A
THR
352
n
352
THR
352
A
GLU
353
n
353
GLU
353
A
ALA
354
n
354
ALA
354
A
ASP
355
n
355
ASP
355
A
VAL
356
n
356
VAL
356
A
VAL
357
n
357
VAL
357
A
THR
358
n
358
THR
358
A
TYR
359
n
359
TYR
359
A
ASN
360
n
360
ASN
360
A
PHE
361
n
361
PHE
361
A
HIS
362
n
362
HIS
362
A
ILE
363
n
363
ILE
363
A
LEU
364
n
364
LEU
364
A
LEU
365
n
365
LEU
365
A
ARG
366
n
366
ARG
366
A
PHE
367
n
367
PHE
367
A
LYS
368
n
368
LYS
368
A
LEU
369
n
369
LEU
369
A
GLU
370
n
370
GLU
370
A
ARG
371
n
371
ARG
371
A
LEU
372
n
372
LEU
372
A
MET
373
n
373
MET
373
A
VAL
374
n
374
VAL
374
A
SER
375
n
375
SER
375
A
GLU
376
n
376
GLU
376
A
GLU
377
n
377
GLU
377
A
ILE
378
n
378
ILE
378
A
LYS
379
n
379
LYS
379
A
ALA
380
n
380
ALA
380
A
LYS
381
n
381
LYS
381
A
ASP
382
n
382
ASP
382
A
LEU
383
n
383
LEU
383
A
PRO
384
n
384
PRO
384
A
GLU
385
n
385
GLU
385
A
MET
386
n
386
MET
386
A
TRP
387
n
387
TRP
387
A
ASN
388
n
388
ASN
388
A
ASP
389
n
389
ASP
389
A
GLU
390
n
390
GLU
390
A
MET
391
n
391
MET
391
A
GLU
392
n
392
GLU
392
A
ARG
393
n
393
ARG
393
A
LEU
394
n
394
LEU
394
A
LEU
395
n
395
LEU
395
A
GLY
396
n
396
GLY
396
A
ILE
397
n
397
ILE
397
A
ARG
398
n
398
ARG
398
A
PRO
399
n
399
PRO
399
A
ARG
400
n
400
ARG
400
A
LYS
401
n
401
LYS
401
A
TYR
402
n
402
TYR
402
A
SER
403
n
403
SER
403
A
GLU
404
n
404
GLU
404
A
GLY
405
n
405
GLY
405
A
ILE
406
n
406
ILE
406
A
LEU
407
n
407
LEU
407
A
GLN
408
n
408
GLN
408
A
ASP
409
n
409
ASP
409
A
ILE
410
n
410
ILE
410
A
HIS
411
n
411
HIS
411
A
TRP
412
n
412
TRP
412
A
ALA
413
n
413
ALA
413
A
HIS
414
n
414
HIS
414
A
GLY
415
n
415
GLY
415
A
SER
416
n
416
SER
416
A
ILE
417
n
417
ILE
417
A
GLY
418
n
418
GLY
418
A
TYR
419
n
419
TYR
419
A
PHE
420
n
420
PHE
420
A
PRO
421
n
421
PRO
421
A
THR
422
n
422
THR
422
A
TYR
423
n
423
TYR
423
A
THR
424
n
424
THR
424
A
ILE
425
n
425
ILE
425
A
GLY
426
n
426
GLY
426
A
THR
427
n
427
THR
427
A
LEU
428
n
428
LEU
428
A
LEU
429
n
429
LEU
429
A
SER
430
n
430
SER
430
A
ALA
431
n
431
ALA
431
A
GLN
432
n
432
GLN
432
A
LEU
433
n
433
LEU
433
A
TYR
434
n
434
TYR
434
A
TYR
435
n
435
TYR
435
A
HIS
436
n
436
HIS
436
A
ILE
437
n
437
ILE
437
A
LYS
438
n
438
LYS
438
A
LYS
439
n
439
LYS
439
A
ASP
440
n
440
ASP
440
A
ILE
441
n
441
ILE
441
A
PRO
442
n
442
PRO
442
A
ASP
443
n
443
ASP
443
A
PHE
444
n
444
PHE
444
A
GLU
445
n
445
GLU
445
A
GLU
446
n
446
GLU
446
A
LYS
447
n
447
LYS
447
A
VAL
448
n
448
VAL
448
A
ALA
449
n
449
ALA
449
A
LYS
450
n
450
LYS
450
A
ALA
451
n
451
ALA
451
A
GLU
452
n
452
GLU
452
A
PHE
453
n
453
PHE
453
A
ASP
454
n
454
ASP
454
A
PRO
455
n
455
PRO
455
A
ILE
456
n
456
ILE
456
A
LYS
457
n
457
LYS
457
A
ALA
458
n
458
ALA
458
A
TRP
459
n
459
TRP
459
A
LEU
460
n
460
LEU
460
A
ARG
461
n
461
ARG
461
A
GLU
462
n
462
GLU
462
A
LYS
463
n
463
LYS
463
A
ILE
464
n
464
ILE
464
A
HIS
465
n
465
HIS
465
A
ARG
466
n
466
ARG
466
A
TRP
467
n
467
TRP
467
A
GLY
468
n
468
GLY
468
A
SER
469
n
469
SER
469
A
ILE
470
n
470
ILE
470
A
TYR
471
n
471
TYR
471
A
PRO
472
n
472
PRO
472
A
PRO
473
n
473
PRO
473
A
LYS
474
n
474
LYS
474
A
GLU
475
n
475
GLU
475
A
LEU
476
n
476
LEU
476
A
LEU
477
n
477
LEU
477
A
LYS
478
n
478
LYS
478
A
LYS
479
n
479
LYS
479
A
ALA
480
n
480
ALA
480
A
ILE
481
n
481
ILE
481
A
GLY
482
n
482
GLY
482
A
GLU
483
n
483
GLU
483
A
ASP
484
n
484
ASP
484
A
MET
485
n
485
MET
485
A
ASP
486
n
486
ASP
486
A
ALA
487
n
487
ALA
487
A
GLU
488
n
488
GLU
488
A
TYR
489
n
489
TYR
489
A
PHE
490
n
490
PHE
490
A
VAL
491
n
491
VAL
491
A
ARG
492
n
492
ARG
492
A
TRP
493
n
493
TRP
493
A
VAL
494
n
494
VAL
494
A
LYS
495
n
495
LYS
495
A
GLU
496
n
496
GLU
496
A
LYS
497
n
497
LYS
497
A
TYR
498
n
498
TYR
498
A
LEU
499
n
499
LEU
499
A
author_defined_assembly
2
dimeric
A
HIS
269
A
NE2
HIS
269
1_555
A
PB
601
B
PB
PB
1_555
A
HIS
273
A
NE2
HIS
273
1_555
104.2
A
HIS
269
A
NE2
HIS
269
1_555
A
PB
601
B
PB
PB
1_555
A
GLU
299
A
OE2
GLU
299
1_555
98.7
A
HIS
273
A
NE2
HIS
273
1_555
A
PB
601
B
PB
PB
1_555
A
GLU
299
A
OE2
GLU
299
1_555
91.9
A
HIS
269
A
NE2
HIS
269
1_555
A
PB
601
B
PB
PB
1_555
A
HOH
602
C
O
HOH
1_555
117.8
A
HIS
273
A
NE2
HIS
273
1_555
A
PB
601
B
PB
PB
1_555
A
HOH
602
C
O
HOH
1_555
116.3
A
GLU
299
A
OE2
GLU
299
1_555
A
PB
601
B
PB
PB
1_555
A
HOH
602
C
O
HOH
1_555
123.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_558
-x,y,-z+3
crystal symmetry operation
-18.2674497018
0.0000000000
200.7254799630
A
N
ARG
232
A
N
ARG
232
A
O
ILE
251
A
O
ILE
251
A
O
ARG
250
A
O
ARG
250
A
N
THR
242
A
N
THR
242
1
A
MET
1
A
MET
1
1
Y
1
A
GLU
2
A
GLU
2
1
Y
1
A
A
OG
O
SER
HOH
375
682
2.09
1
A
A
OD1
O
ASN
HOH
78
670
1.72
1_555
2_559
1
A
TYR
151
-171.13
148.21
1
A
GLU
153
-80.84
-75.88
1
A
GLU
165
-39.74
120.73
1
A
LYS
195
-43.07
-94.79
1
A
PRO
226
-69.53
66.25
1
A
ASP
259
61.24
66.27
1
A
GLN
279
-92.78
41.35
1
A
ILE
344
-45.41
151.08
1
A
SER
375
-93.00
-71.77
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER_REP.TOP
ION.PARAM
ION.TOP
58.1
13.59
0.00
-8.15
-3.29
0.00
-10.30
0.2764000
0.009
0.2363000
0.2363000
0.2363000
3.00
19.75
1499
14993
14993
10.3
95.4
RANDOM
434319.68
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
Engh & Huber
FLAT MODEL
30.5303
0.335892
0.52
0.46
5.00
0.55
0.51
3.00
19.75
83
4247
1
0
4163
0.008
1.3
20.2
0.87
1.19
1.50
2.06
2.00
1.65
2.00
2.66
2.50
0.3910000
0.029
0.3540000
3.19
178
1551
6
10.3
87.2
3.00
20.0
1KA4
14993
14993
2
2
0.0510000
1
22.0
95.0
3.00
3.19
89.4
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
Structure of Pyrococcus furiosus carboxypeptidase Nat-Pb
1
N
N
2
N
N
3
N
N
A
ASN
7
A
ASN
7
HELX_P
A
ASN
37
A
ASN
37
1
1
31
A
PRO
39
A
PRO
39
HELX_P
A
GLU
41
A
GLU
41
5
2
3
A
GLY
42
A
GLY
42
HELX_P
A
LEU
62
A
LEU
62
1
3
21
A
HIS
63
A
HIS
63
HELX_P
A
GLY
75
A
GLY
75
1
4
13
A
ASN
80
A
ASN
80
HELX_P
A
PHE
100
A
PHE
100
1
5
21
A
PRO
101
A
PRO
101
HELX_P
A
LYS
125
A
LYS
125
1
6
25
A
ASP
127
A
ASP
127
HELX_P
A
LYS
130
A
LYS
130
5
7
4
A
PHE
131
A
PHE
131
HELX_P
A
GLY
150
A
GLY
150
1
8
20
A
GLU
154
A
GLU
154
HELX_P
A
GLU
164
A
GLU
164
1
9
11
A
ARG
168
A
ARG
168
HELX_P
A
GLU
193
A
GLU
193
1
10
26
A
HIS
200
A
HIS
200
HELX_P
A
LYS
204
A
LYS
204
5
11
5
A
GLU
208
A
GLU
208
HELX_P
A
GLY
224
A
GLY
224
1
12
17
A
PHE
260
A
PHE
260
HELX_P
A
GLN
279
A
GLN
279
1
13
20
A
ASP
281
A
ASP
281
HELX_P
A
MET
285
A
MET
285
5
14
5
A
SER
294
A
SER
294
HELX_P
A
ASN
307
A
ASN
307
1
15
14
A
SER
312
A
SER
312
HELX_P
A
LEU
327
A
LEU
327
1
16
16
A
PRO
328
A
PRO
328
HELX_P
A
TYR
333
A
TYR
333
5
17
6
A
THR
334
A
THR
334
HELX_P
A
ASN
343
A
ASN
343
1
18
10
A
ILE
350
A
ILE
350
HELX_P
A
ALA
354
A
ALA
354
5
19
5
A
ASP
355
A
ASP
355
HELX_P
A
GLU
376
A
GLU
376
1
20
22
A
LYS
379
A
LYS
379
HELX_P
A
LYS
381
A
LYS
381
5
21
3
A
ASP
382
A
ASP
382
HELX_P
A
GLY
396
A
GLY
396
1
22
15
A
LYS
401
A
LYS
401
HELX_P
A
GLY
405
A
GLY
405
5
23
5
A
ILE
410
A
ILE
410
HELX_P
A
GLY
415
A
GLY
415
1
24
6
A
PHE
420
A
PHE
420
HELX_P
A
ILE
441
A
ILE
441
1
25
22
A
ASP
443
A
ASP
443
HELX_P
A
LYS
450
A
LYS
450
1
26
8
A
PHE
453
A
PHE
453
HELX_P
A
ILE
464
A
ILE
464
1
27
12
A
HIS
465
A
HIS
465
HELX_P
A
GLY
468
A
GLY
468
5
28
4
A
PRO
472
A
PRO
472
HELX_P
A
GLY
482
A
GLY
482
1
29
11
A
ALA
487
A
ALA
487
HELX_P
A
LEU
499
A
LEU
499
1
30
13
metalc
2.281
A
HIS
269
A
NE2
HIS
269
1_555
A
PB
601
B
PB
PB
1_555
metalc
1.969
A
HIS
273
A
NE2
HIS
273
1_555
A
PB
601
B
PB
PB
1_555
metalc
1.875
A
GLU
299
A
OE2
GLU
299
1_555
A
PB
601
B
PB
PB
1_555
metalc
2.215
A
PB
601
B
PB
PB
1_555
A
HOH
602
C
O
HOH
1_555
carboxypeptidase
HEXXH motif, M32 family, metallopeptidase, carboxypeptidase
Q8U3L0_PYRFU
UNP
1
1
Q8U3L0
1
499
1KA4
1
499
Q8U3L0
A
1
1
499
3
parallel
anti-parallel
A
ALA
231
A
ALA
231
A
VAL
235
A
VAL
235
A
ASP
248
A
ASP
248
A
THR
253
A
THR
253
A
THR
241
A
THR
241
A
GLY
245
A
GLY
245
BINDING SITE FOR RESIDUE PB A 601
A
PB
601
Software
5
A
HIS
269
A
HIS
269
5
1_555
A
HIS
273
A
HIS
273
5
1_555
A
GLU
299
A
GLU
299
5
1_555
A
SER
302
A
SER
302
5
1_555
A
HOH
602
C
HOH
5
1_555
5
C 1 2 1