1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Pan, B. Li, B. Russell, S.J. Tom, J.Y.K. Cochran, A.G. Fairbrother, W.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 316 769 787 10.1006/jmbi.2001.5370 11866530 Solution Structure of a Phage-derived Peptide Antagonist in Complex with Vascular Endothelial Growth Factor 2002 10.2210/pdb1kat/pdb pdb_00001kat 11649.396 Vascular Endothelial Growth Factor Receptor Binding Domain 2 man polymer 2346.620 Phage-Derived Peptide Antagonist 2 syn polymer VEGF; VASCULAR PERMEABILITY FACTOR; VPF v107 no no HHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQH IGEMSFLQHNKCECRPKKD HHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQH IGEMSFLQHNKCECRPKKD V,W polypeptide(L) no no GGNECDIARMWEWECFERL GGNECDIARMWEWECFERL X,Y polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample VEGF or VEGFA 9606 Homo sapiens 562 Escherichia coli database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-11-02 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name 1H, 13C, and 15N resonance assignment of the vascular endothelial growth factor receptor-binding domain in complex with a receptor-blocking peptide. 1H, 13C, and 15N resonance assignment of a receptor-blocking peptide in complex with the vascular endothelial growth factor receptor-binding domain. RCSB Y RCSB 2001-11-02 REL The structure was determined using triple-resonance NMR spectroscopy structures with the least restraint violations 120 24 3D_15N-separated_NOESY 3D_13C-separated_NOESY 3D_15N-separated_NOESY 3D_13C-separated_NOESY IPAP_1H_15N_HSQC IPAP_1H_15N_HSQC 3D_13C-edited_12C-filtered_NOESY 3D_12C-filtered_13C-edited_NOESY HNHB HMSQC-HA 50mM sodium chloride, 20 sodium phosphate 7.0 1 atm 308 K 50mM sodium chloride, 20 sodium phosphate 7.0 1 atm 318 K 50mM sodium chloride, 20 sodium phosphate 7.0 1 atm 298 K The structures are based on 3940 NOE-derived distance restraints, 176 distance restraints from hydrogen bonds, 476 dihedral angle restraints, 146 residual dipolar coupling restraints. Torsion angle dynamics simulated annealing 9 closest to the average 0.6mM U-13C/15N labeled v107 + 0.45 mM unlabeled VEGF Dimer; 50mM sodium chloride, 20mM phosphate buffer, 0.002% sodium azide 90% H2O/10% D2O 0.6mM U-13C/15N labeled v107 + 0.45 mM unlabeled VEGF Dimer; 50mM sodium chloride, 20mM phosphate buffer, 0.002% sodium azide 100% D2O 1.0mM U-13C/15N labeled VEGF dimer + 2.25 mM unlabeled v107; 50mM sodium chloride, 20mM phosphate buffer, 0.002% sodium azide 90% H2O/10% D2O 1.0mM U-13C/15N labeled VEGF dimer + 2.25 mM unlabeled v107; 50mM sodium chloride, 20mM phosphate buffer, 0.002% sodium azide 100% D2O 0.6mM U-13C/15N labeled v107 + 0.45 mM unlabeled VEGF Dimer; 50mM sodium chloride, 20mM phosphate buffer, 0.002% sodium azide, 15mg/ml pf1 phage 90% H2O/10% D2O 1.0mM U-13C/15N labeled VEGF Dimer + 2.25 mM unlabeled v107; 50mM sodium chloride, 20mM phosphate buffer, 0.002% sodium azide, 15mg/ml pf1 phage 90% H2O/10% D2O Bruker, Inc. collection XwinNMR 2.6 Accelys, Inc. processing Felix 98.0 Bartels, Xia, Billeter, Guntert, Wuthrich data analysis XEASY 1.3.13 Accelys, Inc. structure solution CNX 2000.1 Accelys, Inc. refinement CNX 2000.1 600 Bruker DRX 800 Bruker DRX HIS 11 n 1 HIS 11 V HIS 12 n 2 HIS 12 V GLU 13 n 3 GLU 13 V VAL 14 n 4 VAL 14 V VAL 15 n 5 VAL 15 V LYS 16 n 6 LYS 16 V PHE 17 n 7 PHE 17 V MET 18 n 8 MET 18 V ASP 19 n 9 ASP 19 V VAL 20 n 10 VAL 20 V TYR 21 n 11 TYR 21 V GLN 22 n 12 GLN 22 V ARG 23 n 13 ARG 23 V SER 24 n 14 SER 24 V TYR 25 n 15 TYR 25 V CYS 26 n 16 CYS 26 V HIS 27 n 17 HIS 27 V PRO 28 n 18 PRO 28 V ILE 29 n 19 ILE 29 V GLU 30 n 20 GLU 30 V THR 31 n 21 THR 31 V LEU 32 n 22 LEU 32 V VAL 33 n 23 VAL 33 V ASP 34 n 24 ASP 34 V ILE 35 n 25 ILE 35 V PHE 36 n 26 PHE 36 V GLN 37 n 27 GLN 37 V GLU 38 n 28 GLU 38 V TYR 39 n 29 TYR 39 V PRO 40 n 30 PRO 40 V ASP 41 n 31 ASP 41 V GLU 42 n 32 GLU 42 V ILE 43 n 33 ILE 43 V GLU 44 n 34 GLU 44 V TYR 45 n 35 TYR 45 V ILE 46 n 36 ILE 46 V PHE 47 n 37 PHE 47 V LYS 48 n 38 LYS 48 V PRO 49 n 39 PRO 49 V SER 50 n 40 SER 50 V CYS 51 n 41 CYS 51 V VAL 52 n 42 VAL 52 V PRO 53 n 43 PRO 53 V LEU 54 n 44 LEU 54 V MET 55 n 45 MET 55 V ARG 56 n 46 ARG 56 V CYS 57 n 47 CYS 57 V GLY 58 n 48 GLY 58 V GLY 59 n 49 GLY 59 V CYS 60 n 50 CYS 60 V CYS 61 n 51 CYS 61 V ASN 62 n 52 ASN 62 V ASP 63 n 53 ASP 63 V GLU 64 n 54 GLU 64 V GLY 65 n 55 GLY 65 V LEU 66 n 56 LEU 66 V GLU 67 n 57 GLU 67 V CYS 68 n 58 CYS 68 V VAL 69 n 59 VAL 69 V PRO 70 n 60 PRO 70 V THR 71 n 61 THR 71 V GLU 72 n 62 GLU 72 V GLU 73 n 63 GLU 73 V SER 74 n 64 SER 74 V ASN 75 n 65 ASN 75 V ILE 76 n 66 ILE 76 V THR 77 n 67 THR 77 V MET 78 n 68 MET 78 V GLN 79 n 69 GLN 79 V ILE 80 n 70 ILE 80 V MET 81 n 71 MET 81 V ARG 82 n 72 ARG 82 V ILE 83 n 73 ILE 83 V LYS 84 n 74 LYS 84 V PRO 85 n 75 PRO 85 V HIS 86 n 76 HIS 86 V GLN 87 n 77 GLN 87 V GLY 88 n 78 GLY 88 V GLN 89 n 79 GLN 89 V HIS 90 n 80 HIS 90 V ILE 91 n 81 ILE 91 V GLY 92 n 82 GLY 92 V GLU 93 n 83 GLU 93 V MET 94 n 84 MET 94 V SER 95 n 85 SER 95 V PHE 96 n 86 PHE 96 V LEU 97 n 87 LEU 97 V GLN 98 n 88 GLN 98 V HIS 99 n 89 HIS 99 V ASN 100 n 90 ASN 100 V LYS 101 n 91 LYS 101 V CYS 102 n 92 CYS 102 V GLU 103 n 93 GLU 103 V CYS 104 n 94 CYS 104 V ARG 105 n 95 ARG 105 V PRO 106 n 96 PRO 106 V LYS 107 n 97 LYS 107 V LYS 108 n 98 LYS 108 V ASP 109 n 99 ASP 109 V HIS 11 n 1 HIS 11 W HIS 12 n 2 HIS 12 W GLU 13 n 3 GLU 13 W VAL 14 n 4 VAL 14 W VAL 15 n 5 VAL 15 W LYS 16 n 6 LYS 16 W PHE 17 n 7 PHE 17 W MET 18 n 8 MET 18 W ASP 19 n 9 ASP 19 W VAL 20 n 10 VAL 20 W TYR 21 n 11 TYR 21 W GLN 22 n 12 GLN 22 W ARG 23 n 13 ARG 23 W SER 24 n 14 SER 24 W TYR 25 n 15 TYR 25 W CYS 26 n 16 CYS 26 W HIS 27 n 17 HIS 27 W PRO 28 n 18 PRO 28 W ILE 29 n 19 ILE 29 W GLU 30 n 20 GLU 30 W THR 31 n 21 THR 31 W LEU 32 n 22 LEU 32 W VAL 33 n 23 VAL 33 W ASP 34 n 24 ASP 34 W ILE 35 n 25 ILE 35 W PHE 36 n 26 PHE 36 W GLN 37 n 27 GLN 37 W GLU 38 n 28 GLU 38 W TYR 39 n 29 TYR 39 W PRO 40 n 30 PRO 40 W ASP 41 n 31 ASP 41 W GLU 42 n 32 GLU 42 W ILE 43 n 33 ILE 43 W GLU 44 n 34 GLU 44 W TYR 45 n 35 TYR 45 W ILE 46 n 36 ILE 46 W PHE 47 n 37 PHE 47 W LYS 48 n 38 LYS 48 W PRO 49 n 39 PRO 49 W SER 50 n 40 SER 50 W CYS 51 n 41 CYS 51 W VAL 52 n 42 VAL 52 W PRO 53 n 43 PRO 53 W LEU 54 n 44 LEU 54 W MET 55 n 45 MET 55 W ARG 56 n 46 ARG 56 W CYS 57 n 47 CYS 57 W GLY 58 n 48 GLY 58 W GLY 59 n 49 GLY 59 W CYS 60 n 50 CYS 60 W CYS 61 n 51 CYS 61 W ASN 62 n 52 ASN 62 W ASP 63 n 53 ASP 63 W GLU 64 n 54 GLU 64 W GLY 65 n 55 GLY 65 W LEU 66 n 56 LEU 66 W GLU 67 n 57 GLU 67 W CYS 68 n 58 CYS 68 W VAL 69 n 59 VAL 69 W PRO 70 n 60 PRO 70 W THR 71 n 61 THR 71 W GLU 72 n 62 GLU 72 W GLU 73 n 63 GLU 73 W SER 74 n 64 SER 74 W ASN 75 n 65 ASN 75 W ILE 76 n 66 ILE 76 W THR 77 n 67 THR 77 W MET 78 n 68 MET 78 W GLN 79 n 69 GLN 79 W ILE 80 n 70 ILE 80 W MET 81 n 71 MET 81 W ARG 82 n 72 ARG 82 W ILE 83 n 73 ILE 83 W LYS 84 n 74 LYS 84 W PRO 85 n 75 PRO 85 W HIS 86 n 76 HIS 86 W GLN 87 n 77 GLN 87 W GLY 88 n 78 GLY 88 W GLN 89 n 79 GLN 89 W HIS 90 n 80 HIS 90 W ILE 91 n 81 ILE 91 W GLY 92 n 82 GLY 92 W GLU 93 n 83 GLU 93 W MET 94 n 84 MET 94 W SER 95 n 85 SER 95 W PHE 96 n 86 PHE 96 W LEU 97 n 87 LEU 97 W GLN 98 n 88 GLN 98 W HIS 99 n 89 HIS 99 W ASN 100 n 90 ASN 100 W LYS 101 n 91 LYS 101 W CYS 102 n 92 CYS 102 W GLU 103 n 93 GLU 103 W CYS 104 n 94 CYS 104 W ARG 105 n 95 ARG 105 W PRO 106 n 96 PRO 106 W LYS 107 n 97 LYS 107 W LYS 108 n 98 LYS 108 W ASP 109 n 99 ASP 109 W GLY 1 n 1 GLY 1 X GLY 2 n 2 GLY 2 X ASN 3 n 3 ASN 3 X GLU 4 n 4 GLU 4 X CYS 5 n 5 CYS 5 X ASP 6 n 6 ASP 6 X ILE 7 n 7 ILE 7 X ALA 8 n 8 ALA 8 X ARG 9 n 9 ARG 9 X MET 10 n 10 MET 10 X TRP 11 n 11 TRP 11 X GLU 12 n 12 GLU 12 X TRP 13 n 13 TRP 13 X GLU 14 n 14 GLU 14 X CYS 15 n 15 CYS 15 X PHE 16 n 16 PHE 16 X GLU 17 n 17 GLU 17 X ARG 18 n 18 ARG 18 X LEU 19 n 19 LEU 19 X GLY 1 n 1 GLY 1 Y GLY 2 n 2 GLY 2 Y ASN 3 n 3 ASN 3 Y GLU 4 n 4 GLU 4 Y CYS 5 n 5 CYS 5 Y ASP 6 n 6 ASP 6 Y ILE 7 n 7 ILE 7 Y ALA 8 n 8 ALA 8 Y ARG 9 n 9 ARG 9 Y MET 10 n 10 MET 10 Y TRP 11 n 11 TRP 11 Y GLU 12 n 12 GLU 12 Y TRP 13 n 13 TRP 13 Y GLU 14 n 14 GLU 14 Y CYS 15 n 15 CYS 15 Y PHE 16 n 16 PHE 16 Y GLU 17 n 17 GLU 17 Y ARG 18 n 18 ARG 18 Y LEU 19 n 19 LEU 19 Y author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 V N ILE 29 A N ILE 19 V O ARG 56 A O ARG 46 V N ILE 46 A N ILE 36 V O ILE 83 A O ILE 73 V N ILE 80 A N ILE 70 V O GLY 92 A O GLY 82 V N VAL 69 A N VAL 59 V O GLU 103 A O GLU 93 W N ILE 29 B N ILE 19 W O ARG 56 B O ARG 46 W N ILE 46 B N ILE 36 W O ILE 83 B O ILE 73 W N ILE 80 B N ILE 70 W O GLY 92 B O GLY 82 W N VAL 69 B N VAL 59 W O GLU 103 B O GLU 93 1 V HIS 12 -86.12 -83.42 1 V GLU 13 172.69 179.80 1 V CYS 26 -39.91 103.25 1 V GLN 87 -120.21 -124.52 1 W GLU 13 65.78 -174.28 1 W CYS 26 -38.50 102.66 1 W GLN 87 -120.97 -122.81 1 W HIS 90 -171.67 149.40 1 W LYS 108 -110.74 -70.57 1 X ASN 3 -157.08 47.95 1 X GLU 4 -99.66 40.32 1 X ALA 8 -97.93 33.37 1 X MET 10 -54.69 96.54 1 X TRP 11 -68.05 92.79 1 X GLU 12 -60.13 -172.72 1 X ARG 18 -117.49 70.95 1 Y ASN 3 -164.06 40.60 1 Y GLU 4 -97.73 46.42 1 Y ALA 8 -98.67 33.01 1 Y MET 10 -51.60 95.23 1 Y TRP 11 -66.14 94.18 1 Y GLU 12 -61.26 -172.04 1 Y ARG 18 -111.45 68.81 2 V GLU 13 -148.12 21.20 2 V CYS 26 -37.22 100.80 2 V TYR 39 -114.41 74.98 2 V HIS 86 75.12 -2.44 2 V GLN 87 -123.16 -116.19 2 V LYS 108 -137.67 -64.18 2 W CYS 26 -39.08 101.90 2 W TYR 39 -114.60 75.99 2 W HIS 86 74.96 -2.24 2 W GLN 87 -122.63 -118.56 2 W LYS 108 -162.98 40.48 2 X ALA 8 -99.80 36.38 2 X MET 10 -50.03 95.02 2 X TRP 11 -69.59 88.32 2 X GLU 12 -57.20 -174.89 2 Y ASN 3 -62.20 84.69 2 Y MET 10 -48.82 95.07 2 Y TRP 11 -69.81 90.42 2 Y GLU 12 -59.30 -173.57 3 V HIS 12 -176.64 84.82 3 V GLU 13 -66.47 -76.54 3 V CYS 26 -38.18 104.75 3 V TYR 39 -118.98 77.21 3 V PRO 85 -58.18 104.23 3 W HIS 12 -170.25 -42.57 3 W GLU 13 60.61 -88.22 3 W CYS 26 -39.61 103.94 3 W TYR 39 -119.97 77.07 3 W GLN 87 -125.81 -101.95 3 W LYS 108 -177.22 106.15 3 X ALA 8 -98.43 34.12 3 X MET 10 -52.52 95.24 3 X TRP 11 -68.63 86.92 3 X GLU 12 -59.51 -163.76 3 Y ALA 8 -98.59 34.49 3 Y MET 10 -54.27 95.90 3 Y TRP 11 -68.93 87.61 3 Y GLU 12 -59.38 -163.21 4 V CYS 26 -36.54 98.98 4 V GLN 87 -122.50 -115.93 4 W CYS 26 -36.55 99.50 4 W GLN 87 -121.31 -118.99 4 X ALA 8 -98.39 39.66 4 X MET 10 -54.77 92.17 4 X TRP 11 -69.06 89.70 4 X GLU 12 -58.90 -164.74 4 X ARG 18 -95.54 55.84 4 Y ALA 8 -97.79 39.59 4 Y MET 10 -52.68 92.51 4 Y TRP 11 -69.70 90.36 4 Y GLU 12 -59.74 -163.68 4 Y ARG 18 -95.32 56.67 5 V HIS 12 -168.98 -157.57 5 V GLU 13 63.45 139.42 5 V CYS 26 -39.93 103.05 5 V HIS 86 74.36 -4.24 5 V GLN 87 -122.39 -117.02 5 W HIS 12 -165.91 -157.72 5 W GLU 13 63.30 141.05 5 W CYS 26 -41.45 102.90 5 W HIS 86 73.73 -4.30 5 W LYS 108 -112.29 54.81 5 X ASN 3 -151.70 -48.44 5 X MET 10 -50.19 97.90 5 X GLU 12 -56.80 -171.55 5 X ARG 18 -116.52 69.53 5 Y ASN 3 -151.48 -47.93 5 Y MET 10 -52.22 97.96 5 Y GLU 12 -56.07 -171.06 5 Y ARG 18 -116.09 69.37 6 V CYS 26 -38.92 105.19 6 V GLN 87 -122.37 -114.29 6 W CYS 26 -37.36 103.66 6 W GLN 87 -122.17 -114.72 6 W LYS 108 -140.86 55.47 6 X ALA 8 -98.17 32.12 6 X MET 10 -56.56 99.40 6 X TRP 11 -69.87 89.75 6 X GLU 12 -56.52 -171.31 6 Y ALA 8 -98.88 36.56 6 Y MET 10 -56.12 98.76 6 Y TRP 11 -69.80 90.04 6 Y GLU 12 -56.58 -171.48 7 V HIS 12 73.90 -0.37 7 V GLU 13 -99.56 -64.57 7 V CYS 26 -41.01 102.94 7 V TYR 39 -105.45 78.84 7 V HIS 86 80.35 -8.34 7 V GLN 87 -114.29 -128.29 7 W CYS 26 -40.44 104.93 7 W TYR 39 -105.39 79.67 7 W HIS 86 78.48 -6.38 7 X ALA 8 -93.93 30.08 7 X MET 10 -51.52 96.78 7 X TRP 11 -68.51 90.17 7 X GLU 12 -56.50 -167.83 7 Y MET 10 -53.99 97.97 7 Y TRP 11 -69.83 90.06 7 Y GLU 12 -56.88 -167.26 8 V GLU 13 -149.14 -109.73 8 V CYS 26 -39.70 108.52 8 V TYR 39 -109.33 74.39 8 V SER 74 -175.52 146.75 8 V HIS 86 77.21 -4.67 8 V LYS 108 -104.10 49.29 8 W GLU 13 -155.21 -153.18 8 W CYS 26 -41.65 107.20 8 W TYR 39 -109.33 74.73 8 W SER 74 -175.50 147.51 8 W HIS 86 76.69 -5.05 8 W GLN 87 -117.93 -120.70 8 X MET 10 -50.60 100.72 8 X GLU 12 -58.16 -171.27 8 Y ASN 3 59.77 87.58 8 Y MET 10 -50.86 101.29 8 Y GLU 12 -57.86 -171.72 9 V CYS 26 -40.73 102.21 9 V TYR 39 -108.81 78.61 9 V GLN 87 -121.10 -125.42 9 W CYS 26 -39.19 103.07 9 W TYR 39 -109.05 78.56 9 W GLN 87 -121.53 -125.42 9 X ASN 3 -156.36 -46.59 9 X MET 10 -51.11 97.50 9 X TRP 11 -67.84 92.30 9 X GLU 12 -58.34 -167.99 9 Y ASN 3 -156.24 -46.47 9 Y ALA 8 -98.58 31.24 9 Y MET 10 -49.59 98.04 9 Y TRP 11 -69.53 91.04 9 Y GLU 12 -56.98 -169.76 10 V HIS 12 -149.64 -47.64 10 V GLU 13 58.68 171.31 10 V CYS 26 -39.41 104.96 10 V HIS 86 77.88 -4.82 10 V GLN 87 -119.65 -122.33 10 V LYS 108 -123.98 -69.30 10 W CYS 26 -38.30 105.19 10 W HIS 86 76.65 -3.70 10 W GLN 87 -120.10 -122.80 10 X ASN 3 64.93 -80.54 10 X GLU 4 -161.59 -66.93 10 X ALA 8 -97.77 35.83 10 X MET 10 -51.99 96.00 10 X TRP 11 -69.89 90.56 10 X GLU 12 -56.82 -168.33 10 Y ASN 3 -157.96 -54.30 10 Y GLU 4 -171.95 -50.20 10 Y ALA 8 -97.48 33.99 10 Y MET 10 -51.53 95.75 10 Y TRP 11 -69.90 90.28 10 Y GLU 12 -56.62 -168.44 11 V CYS 26 -39.33 106.08 11 V HIS 86 76.30 -5.77 11 W HIS 12 -62.00 84.97 11 W CYS 26 -38.22 105.64 11 W HIS 86 76.27 -5.38 11 W GLN 87 -117.17 -121.14 11 W LYS 108 -101.59 -69.91 11 X ALA 8 -99.15 34.32 11 X MET 10 -54.24 95.91 11 X GLU 12 -57.10 -172.56 11 Y ASN 3 61.15 115.65 11 Y ALA 8 -97.34 34.82 11 Y MET 10 -52.89 94.86 11 Y TRP 11 -69.49 88.22 11 Y GLU 12 -55.60 -172.65 12 V CYS 26 -39.89 98.06 12 V TYR 39 -110.63 74.06 12 V GLN 87 -115.23 -129.37 12 W HIS 12 53.25 -91.84 12 W GLU 13 55.68 -79.28 12 W CYS 26 -39.90 98.70 12 W TYR 39 -112.64 74.17 12 W GLN 87 -116.19 -129.90 12 W LYS 108 -93.25 -66.48 12 X ASN 3 -158.66 33.40 12 X ALA 8 -96.63 31.98 12 X MET 10 -52.95 96.68 12 X GLU 12 -54.73 -172.45 12 X ARG 18 -101.30 66.12 12 Y ASN 3 -160.38 35.70 12 Y ALA 8 -99.38 34.40 12 Y MET 10 -47.44 96.12 12 Y TRP 11 -69.97 90.14 12 Y GLU 12 -55.95 -171.44 12 Y ARG 18 -102.06 63.81 13 V CYS 26 -38.22 104.25 13 V TYR 39 -111.77 79.20 13 V SER 74 -174.34 145.43 13 V HIS 86 75.89 -2.12 13 V GLN 87 -119.09 -121.52 13 V LYS 108 -176.76 38.57 13 W CYS 26 -39.17 104.39 13 W TYR 39 -109.51 78.48 13 W SER 74 -174.51 145.99 13 W HIS 86 90.57 -26.48 13 W GLN 87 -95.71 -125.75 13 W LYS 108 -175.91 39.22 13 X ASN 3 -167.68 -43.84 13 X ALA 8 -95.57 31.79 13 X MET 10 -53.88 96.10 13 X TRP 11 -67.22 92.08 13 X GLU 12 -61.20 -168.17 13 Y ASN 3 -167.78 -43.86 13 Y ALA 8 -94.79 32.58 13 Y MET 10 -54.17 96.46 13 Y TRP 11 -66.98 92.83 13 Y GLU 12 -61.36 -167.96 14 V HIS 12 -89.05 -72.08 14 V GLU 13 -170.11 64.09 14 V CYS 26 -39.37 101.70 14 V TYR 39 -109.99 75.05 14 V SER 74 -175.39 144.62 14 V GLN 87 -120.91 -121.53 14 W HIS 12 -88.41 -72.14 14 W GLU 13 -170.36 62.89 14 W CYS 26 -38.91 101.55 14 W TYR 39 -110.65 75.38 14 W SER 74 -175.86 145.15 14 W GLN 87 -121.55 -122.77 14 W LYS 108 -135.90 -157.27 14 X ALA 8 -99.20 31.51 14 X MET 10 -54.23 96.41 14 X GLU 12 -56.46 -169.33 14 Y ALA 8 -99.81 32.56 14 Y MET 10 -53.30 96.94 14 Y GLU 12 -56.64 -168.80 15 V HIS 12 57.97 174.44 15 V GLU 13 -135.56 -64.39 15 V CYS 26 -40.88 106.02 15 V TYR 39 -105.99 78.56 15 V GLN 87 -123.73 -120.83 15 V LYS 108 -135.83 -69.09 15 W CYS 26 -39.46 108.03 15 W TYR 39 -106.07 78.98 15 W LYS 108 -136.13 -69.01 15 X ALA 8 -97.26 36.01 15 X MET 10 -57.81 98.05 15 X GLU 12 -59.24 -163.59 15 X ARG 18 -91.67 52.13 15 Y ALA 8 -98.19 35.48 15 Y MET 10 -54.39 94.67 15 Y GLU 12 -60.79 -162.78 16 V HIS 12 65.19 133.37 16 V CYS 26 -38.31 99.92 16 V TYR 39 -105.41 74.34 16 V SER 74 -175.32 146.59 16 V GLN 87 -121.76 -114.54 16 W CYS 26 -37.70 100.13 16 W TYR 39 -105.47 75.65 16 W SER 74 -175.07 148.93 16 X ASN 3 58.17 106.53 16 X ALA 8 -97.70 34.23 16 X MET 10 -55.44 98.74 16 X TRP 11 -69.99 90.19 16 X GLU 12 -57.87 -171.62 16 X ARG 18 -111.59 67.15 16 Y ALA 8 -98.72 35.11 16 Y MET 10 -54.21 98.23 16 Y GLU 12 -57.80 -170.91 16 Y ARG 18 -111.78 67.13 17 V CYS 26 -39.13 106.81 17 V TYR 39 -107.79 74.19 17 V HIS 86 83.84 -13.92 17 W CYS 26 -40.74 105.83 17 W HIS 86 84.02 -14.90 17 X GLU 4 -135.87 -56.89 17 X ALA 8 -98.52 33.95 17 X MET 10 -52.78 93.58 17 X TRP 11 -69.92 89.62 17 X GLU 12 -55.77 -170.26 17 Y GLU 4 -136.23 -56.67 17 Y ALA 8 -97.87 35.01 17 Y MET 10 -54.73 93.70 17 Y TRP 11 -69.16 89.36 17 Y GLU 12 -55.52 -169.42 18 V HIS 12 -157.29 -50.10 18 V CYS 26 -36.95 105.33 18 V HIS 86 75.10 -5.92 18 W HIS 12 -156.01 -49.58 18 W CYS 26 -37.10 104.95 18 W HIS 86 74.73 -6.03 18 X ALA 8 -96.46 31.97 18 X MET 10 -52.87 96.51 18 X GLU 12 -59.97 -166.88 18 X ARG 18 -100.23 62.22 18 Y ALA 8 -96.17 32.67 18 Y MET 10 -52.31 96.23 18 Y GLU 12 -60.96 -166.95 19 V HIS 12 -61.13 -179.86 19 V CYS 26 -38.00 105.14 19 V TYR 39 -107.64 70.19 19 V GLN 87 -122.69 -117.71 19 W HIS 12 60.45 173.23 19 W CYS 26 -38.32 104.44 19 W TYR 39 -105.79 76.86 19 W GLN 87 -122.49 -117.61 19 X ASN 3 -135.01 -65.97 19 X GLU 4 -174.12 110.74 19 X ALA 8 -97.33 33.13 19 X MET 10 -49.98 94.50 19 X TRP 11 -69.71 89.42 19 X GLU 12 -60.99 -170.71 19 Y ASN 3 -124.55 -65.88 19 Y GLU 4 -173.87 118.68 19 Y ALA 8 -95.85 33.19 19 Y MET 10 -48.65 96.24 19 Y GLU 12 -60.00 -171.84 19 Y ARG 18 -90.41 54.78 20 V HIS 12 -147.70 59.62 20 V CYS 26 -36.97 100.80 20 V TYR 39 -119.28 73.81 20 V HIS 86 81.63 -10.52 20 W CYS 26 -36.77 101.87 20 W TYR 39 -117.95 73.94 20 W HIS 86 81.16 -10.02 20 X MET 10 -53.70 93.31 20 X GLU 12 -59.87 -170.34 20 Y ALA 8 -98.49 34.79 20 Y MET 10 -55.91 94.39 20 Y GLU 12 -59.78 -169.56 21 V CYS 26 -42.25 106.37 21 V GLN 87 -121.09 -118.04 21 W HIS 12 -108.32 41.91 21 W CYS 26 -41.13 105.54 21 W GLN 87 -120.01 -117.08 21 W LYS 108 45.03 -171.02 21 X ASN 3 -166.77 37.72 21 X MET 10 -53.24 93.58 21 X GLU 12 -59.56 -165.52 21 X ARG 18 -101.94 58.93 21 Y MET 10 -45.96 94.54 21 Y GLU 12 -53.88 -169.06 21 Y ARG 18 -95.06 54.44 22 V CYS 26 -38.66 108.65 22 V HIS 86 74.15 -0.57 22 V GLN 87 -123.76 -116.08 22 V HIS 90 -170.33 126.07 22 V LYS 108 -140.86 -63.92 22 W GLU 13 -79.18 -164.27 22 W CYS 26 -39.14 109.86 22 W SER 74 -174.70 146.76 22 W HIS 86 74.61 -1.31 22 W GLN 87 -123.50 -117.60 22 W LYS 108 -141.02 -63.74 22 X ALA 8 -98.27 34.81 22 X MET 10 -54.84 96.47 22 X TRP 11 -69.82 89.64 22 X GLU 12 -57.26 -171.33 22 Y ALA 8 -98.69 33.88 22 Y MET 10 -52.18 96.12 22 Y TRP 11 -69.45 89.85 22 Y GLU 12 -57.06 -171.60 23 V CYS 26 -40.28 103.04 23 V TYR 39 -109.28 69.05 23 V GLN 87 -118.71 -120.28 23 V LYS 108 -97.20 59.16 23 W GLU 13 -146.15 -80.15 23 W CYS 26 -40.15 103.41 23 W TYR 39 -109.29 71.91 23 W GLN 87 -119.24 -125.34 23 W LYS 108 -97.44 57.75 23 X ASN 3 -93.75 48.15 23 X ALA 8 -98.08 34.12 23 X MET 10 -48.55 94.19 23 X GLU 12 -60.51 -174.93 23 Y ASN 3 -93.79 48.00 23 Y ALA 8 -98.95 34.39 23 Y MET 10 -52.54 96.03 23 Y GLU 12 -60.10 -173.89 24 V CYS 26 -39.32 110.01 24 V GLN 87 -125.06 -112.13 24 W CYS 26 -38.13 106.33 24 W GLN 87 -126.69 -110.78 24 W LYS 108 -91.33 57.39 24 X ALA 8 -99.02 33.15 24 X MET 10 -51.19 93.58 24 X GLU 12 -62.49 -163.02 24 Y MET 10 -49.34 93.12 24 Y GLU 12 -61.50 -164.33 Solution Structure of a Phage-Derived Peptide Antagonist in Complex with Vascular Endothelial Growth Factor 1 N N 1 N N 2 N N 2 N N V LYS 16 A LYS 6 HELX_P V TYR 25 A TYR 15 1 1 10 V ILE 35 A ILE 25 HELX_P V TYR 39 A TYR 29 1 2 5 W LYS 16 B LYS 6 HELX_P W TYR 25 B TYR 15 1 3 10 W ILE 35 B ILE 25 HELX_P W TYR 39 B TYR 29 1 4 5 X GLU 12 C GLU 12 HELX_P X ARG 18 C ARG 18 1 5 7 Y GLU 12 D GLU 12 HELX_P Y ARG 18 D ARG 18 1 6 7 disulf 2.032 V CYS 26 A SG CYS 16 1_555 V CYS 68 A SG CYS 58 1_555 disulf 2.033 V CYS 51 A SG CYS 41 1_555 W CYS 60 B SG CYS 50 1_555 disulf 2.033 V CYS 57 A SG CYS 47 1_555 V CYS 102 A SG CYS 92 1_555 disulf 2.032 V CYS 60 A SG CYS 50 1_555 W CYS 51 B SG CYS 41 1_555 disulf 2.031 V CYS 61 A SG CYS 51 1_555 V CYS 104 A SG CYS 94 1_555 disulf 2.031 W CYS 26 B SG CYS 16 1_555 W CYS 68 B SG CYS 58 1_555 disulf 2.032 W CYS 57 B SG CYS 47 1_555 W CYS 102 B SG CYS 92 1_555 disulf 2.029 W CYS 61 B SG CYS 51 1_555 W CYS 104 B SG CYS 94 1_555 disulf 2.033 X CYS 5 C SG CYS 5 1_555 X CYS 15 C SG CYS 15 1_555 disulf 2.032 Y CYS 5 D SG CYS 5 1_555 Y CYS 15 D SG CYS 15 1_555 CELL CYCLE, HORMONE/GROWTH FACTOR Protein-peptide complex, homodimer, cystine knot, CELL CYCLE, HORMONE-GROWTH FACTOR COMPLEX V LYS 48 A LYS 38 1 V PRO 49 A PRO 39 0.42 W LYS 48 B LYS 38 1 W PRO 49 B PRO 39 0.43 V LYS 48 A LYS 38 2 V PRO 49 A PRO 39 0.55 W LYS 48 B LYS 38 2 W PRO 49 B PRO 39 0.22 V LYS 48 A LYS 38 3 V PRO 49 A PRO 39 0.57 W LYS 48 B LYS 38 3 W PRO 49 B PRO 39 0.67 V LYS 48 A LYS 38 4 V PRO 49 A PRO 39 0.16 W LYS 48 B LYS 38 4 W PRO 49 B PRO 39 0.27 V LYS 48 A LYS 38 5 V PRO 49 A PRO 39 0.49 W LYS 48 B LYS 38 5 W PRO 49 B PRO 39 0.45 V LYS 48 A LYS 38 6 V PRO 49 A PRO 39 0.43 W LYS 48 B LYS 38 6 W PRO 49 B PRO 39 0.44 V LYS 48 A LYS 38 7 V PRO 49 A PRO 39 0.73 W LYS 48 B LYS 38 7 W PRO 49 B PRO 39 0.53 V LYS 48 A LYS 38 8 V PRO 49 A PRO 39 0.36 W LYS 48 B LYS 38 8 W PRO 49 B PRO 39 0.39 V LYS 48 A LYS 38 9 V PRO 49 A PRO 39 0.45 W LYS 48 B LYS 38 9 W PRO 49 B PRO 39 0.57 V LYS 48 A LYS 38 10 V PRO 49 A PRO 39 0.46 W LYS 48 B LYS 38 10 W PRO 49 B PRO 39 0.29 V LYS 48 A LYS 38 11 V PRO 49 A PRO 39 0.63 W LYS 48 B LYS 38 11 W PRO 49 B PRO 39 0.49 V LYS 48 A LYS 38 12 V PRO 49 A PRO 39 0.78 W LYS 48 B LYS 38 12 W PRO 49 B PRO 39 0.65 V LYS 48 A LYS 38 13 V PRO 49 A PRO 39 0.74 W LYS 48 B LYS 38 13 W PRO 49 B PRO 39 0.63 V LYS 48 A LYS 38 14 V PRO 49 A PRO 39 0.47 W LYS 48 B LYS 38 14 W PRO 49 B PRO 39 0.48 V LYS 48 A LYS 38 15 V PRO 49 A PRO 39 0.75 W LYS 48 B LYS 38 15 W PRO 49 B PRO 39 0.56 V LYS 48 A LYS 38 16 V PRO 49 A PRO 39 0.45 W LYS 48 B LYS 38 16 W PRO 49 B PRO 39 0.64 V LYS 48 A LYS 38 17 V PRO 49 A PRO 39 0.72 W LYS 48 B LYS 38 17 W PRO 49 B PRO 39 0.78 V LYS 48 A LYS 38 18 V PRO 49 A PRO 39 0.46 W LYS 48 B LYS 38 18 W PRO 49 B PRO 39 0.68 V LYS 48 A LYS 38 19 V PRO 49 A PRO 39 0.22 W LYS 48 B LYS 38 19 W PRO 49 B PRO 39 0.34 V LYS 48 A LYS 38 20 V PRO 49 A PRO 39 0.96 W LYS 48 B LYS 38 20 W PRO 49 B PRO 39 1.06 V LYS 48 A LYS 38 21 V PRO 49 A PRO 39 0.54 W LYS 48 B LYS 38 21 W PRO 49 B PRO 39 0.41 V LYS 48 A LYS 38 22 V PRO 49 A PRO 39 0.66 W LYS 48 B LYS 38 22 W PRO 49 B PRO 39 0.34 V LYS 48 A LYS 38 23 V PRO 49 A PRO 39 0.43 W LYS 48 B LYS 38 23 W PRO 49 B PRO 39 0.33 V LYS 48 A LYS 38 24 V PRO 49 A PRO 39 0.74 W LYS 48 B LYS 38 24 W PRO 49 B PRO 39 0.66 VEGFA_HUMAN UNP 1 37 P15692 HHEVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQH IGEMSFLQHNKCECRPKKD 1KAT PDB 2 1KAT 37 135 1KAT 11 109 P15692 V 1 1 99 37 135 1KAT 11 109 P15692 W 1 1 99 1 19 1KAT 1 19 1KAT X 2 1 19 1 19 1KAT 1 19 1KAT Y 2 1 19 2 3 2 2 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel V HIS 27 A HIS 17 V ASP 34 A ASP 24 V CYS 51 A CYS 41 V GLY 58 A GLY 48 V ILE 46 A ILE 36 V LYS 48 A LYS 38 V GLU 73 A GLU 63 V ILE 83 A ILE 73 V GLN 89 A GLN 79 V HIS 99 A HIS 89 V LEU 66 A LEU 56 V PRO 70 A PRO 60 V CYS 102 A CYS 92 V PRO 106 A PRO 96 W HIS 27 B HIS 17 W ASP 34 B ASP 24 W CYS 51 B CYS 41 W GLY 58 B GLY 48 W ILE 46 B ILE 36 W LYS 48 B LYS 38 W GLU 73 B GLU 63 W ILE 83 B ILE 73 W GLN 89 B GLN 79 W HIS 99 B HIS 89 W LEU 66 B LEU 56 W PRO 70 B PRO 60 W CYS 102 B CYS 92 W PRO 106 B PRO 96