1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Tisne, C.
Hantz, E.
Hartmann, B.
Delepierre, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
279
127
142
10.1006/jmbi.1998.1757
9636705
Solution structure of a non-palindromic 16 base-pair DNA related to the HIV-1 kappa B site: evidence for BI-BII equilibrium inducing a global dynamic curvature of the duplex.
1998
10.2210/pdb1kbd/pdb
pdb_00001kbd
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4930.189
DNA (5'-D(*CP*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*AP*GP*G)-3')
1
syn
polymer
4868.169
DNA (5'-D(*CP*CP*TP*GP*GP*AP*AP*AP*GP*TP*CP*CP*CP*CP*AP*G)-3')
1
syn
polymer
HIV-1 KAPA-B SITE
HIV-1 KAPA-B SITE
no
no
(DC)(DT)(DG)(DG)(DG)(DG)(DA)(DC)(DT)(DT)(DT)(DC)(DC)(DA)(DG)(DG)
CTGGGGACTTTCCAGG
A
polydeoxyribonucleotide
no
no
(DC)(DC)(DT)(DG)(DG)(DA)(DA)(DA)(DG)(DT)(DC)(DC)(DC)(DC)(DA)(DG)
CCTGGAAAGTCCCCAG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-20.083
1
19
A
1
B
32
-1.175
A_DC1:DG32_B
1
10.261
0.273
0.486
-0.020
-7.230
1
20
A
2
B
31
-5.816
A_DT2:DA31_B
2
-18.330
-0.250
0.152
0.017
9.595
1
19
A
3
B
30
-0.658
A_DG3:DC30_B
3
6.628
-0.301
0.122
-0.056
15.992
1
19
A
4
B
29
-1.480
A_DG4:DC29_B
4
13.301
-0.327
0.139
-0.037
7.118
1
19
A
5
B
28
-1.044
A_DG5:DC28_B
5
9.943
-0.458
-0.037
-0.103
-0.343
1
19
A
6
B
27
-0.980
A_DG6:DC27_B
6
5.717
-0.417
-0.111
-0.091
-1.348
1
20
A
7
B
26
-1.241
A_DA7:DT26_B
7
-0.427
0.132
-0.181
-0.007
-3.598
1
19
A
8
B
25
-1.157
A_DC8:DG25_B
8
3.171
0.427
0.085
-0.097
-15.009
1
20
A
9
B
24
-2.430
A_DT9:DA24_B
9
-6.236
-0.062
0.132
0.021
-6.569
1
20
A
10
B
23
-1.823
A_DT10:DA23_B
10
-10.101
-0.118
-0.061
-0.004
0.756
1
20
A
11
B
22
-1.464
A_DT11:DA22_B
11
-9.614
-0.161
-0.273
-0.005
2.712
1
19
A
12
B
21
-1.179
A_DC12:DG21_B
12
0.373
0.435
-0.276
-0.103
-10.084
1
19
A
13
B
20
-1.340
A_DC13:DG20_B
13
8.618
0.321
0.084
-0.056
0.083
1
20
A
14
B
19
-2.830
A_DA14:DT19_B
14
-6.529
0.053
-0.016
-0.004
8.117
1
19
A
15
B
18
-1.266
A_DG15:DC18_B
15
0.105
-0.301
0.169
-0.064
10.227
1
19
A
16
B
17
-1.231
A_DG16:DC17_B
16
9.592
-0.388
0.088
-0.073
2.898
39.809
A
A
1
2
-28.454
B
B
32
31
3.211
-18.634
-1.678
-0.500
AA_DC1DT2:DA31DG32_BB
1
4.215
-6.436
35.089
1.423
2.953
3.158
35.982
A
A
2
3
-20.500
B
B
31
30
3.339
-12.419
1.919
-0.133
AA_DT2DG3:DC30DA31_BB
2
-0.629
1.039
33.832
1.600
-3.198
3.484
36.115
A
A
3
4
-9.878
B
B
30
29
3.381
-6.095
0.166
-0.953
AA_DG3DG4:DC29DC30_BB
3
-1.267
2.053
35.592
-0.627
-0.458
4.370
35.863
A
A
4
5
-23.321
B
B
29
28
3.943
-14.000
0.376
-1.879
AA_DG4DG5:DC28DC29_BB
4
1.111
-1.851
33.083
-0.390
-0.400
4.196
36.660
A
A
5
6
-19.848
B
B
28
27
3.853
-12.246
0.167
-1.700
AA_DG5DG6:DC27DC28_BB
5
3.019
-4.894
34.492
-0.570
0.260
3.469
36.785
A
A
6
7
-4.494
B
B
27
26
3.399
-2.829
0.069
-1.185
AA_DG6DA7:DT26DC27_BB
6
3.622
-5.753
36.506
-1.472
0.410
3.663
36.580
A
A
7
8
-8.470
B
B
26
25
3.525
-5.291
0.004
-1.344
AA_DA7DC8:DG25DT26_BB
7
-3.460
5.538
36.048
-1.335
-0.533
4.060
32.851
A
A
8
9
-12.593
B
B
25
24
3.788
-7.069
-0.651
-1.762
AA_DC8DT9:DA24DG25_BB
8
0.639
-1.138
32.096
-1.646
1.284
3.150
38.164
A
A
9
10
-12.995
B
B
24
23
3.124
-8.431
-0.367
-0.513
AA_DT9DT10:DA23DA24_BB
9
1.113
-1.716
37.239
0.249
0.697
3.073
39.464
A
A
10
11
-7.215
B
B
23
22
3.067
-4.859
0.188
-0.194
AA_DT10DT11:DA22DA23_BB
10
1.326
-1.968
39.154
0.253
-0.131
3.247
36.171
A
A
11
12
0.833
B
B
22
21
3.283
0.517
0.749
-0.874
AA_DT11DC12:DG21DA22_BB
11
-1.083
1.745
36.152
-1.480
-1.358
3.526
33.100
A
A
12
13
5.075
B
B
21
20
3.690
2.881
-0.229
-1.787
AA_DC12DC13:DG20DG21_BB
12
-4.021
7.083
32.739
-3.676
-0.351
3.520
28.509
A
A
13
14
-11.651
B
B
20
19
3.314
-5.673
-0.403
-1.979
AA_DC13DA14:DT19DG20_BB
13
4.910
-10.084
27.524
-2.641
2.011
3.229
29.423
A
A
14
15
-3.189
B
B
19
18
3.168
-1.619
0.488
-1.320
AA_DA14DG15:DC18DT19_BB
14
-0.314
0.619
29.378
-2.260
-1.026
3.719
37.743
A
A
15
16
-15.206
B
B
18
17
3.473
-9.733
0.655
-1.378
AA_DG15DG16:DC17DC18_BB
15
0.783
-1.224
36.503
-0.723
-0.900
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Data collection
1
0
1998-12-02
1
1
2008-04-26
1
2
2011-07-13
1
3
2022-02-23
1
4
2023-12-27
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
PDBE
Y
RCSB
1998-11-28
REL
ENERGY
3
NOESY
7.0
308.0
K
BOELENS ET AL.
refinement
IRMA
structure calculation
JUMNA
500
Varian
UNITY
C
1
n
1
DC
1
A
T
2
n
2
DT
2
A
G
3
n
3
DG
3
A
G
4
n
4
DG
4
A
G
5
n
5
DG
5
A
G
6
n
6
DG
6
A
A
7
n
7
DA
7
A
C
8
n
8
DC
8
A
T
9
n
9
DT
9
A
T
10
n
10
DT
10
A
T
11
n
11
DT
11
A
C
12
n
12
DC
12
A
C
13
n
13
DC
13
A
A
14
n
14
DA
14
A
G
15
n
15
DG
15
A
G
16
n
16
DG
16
A
C
17
n
1
DC
17
B
C
18
n
2
DC
18
B
T
19
n
3
DT
19
B
G
20
n
4
DG
20
B
G
21
n
5
DG
21
B
A
22
n
6
DA
22
B
A
23
n
7
DA
23
B
A
24
n
8
DA
24
B
G
25
n
9
DG
25
B
T
26
n
10
DT
26
B
C
27
n
11
DC
27
B
C
28
n
12
DC
28
B
C
29
n
13
DC
29
B
C
30
n
14
DC
30
B
A
31
n
15
DA
31
B
G
32
n
16
DG
32
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
O5'
DC
1
A
O5'
DC
1
1
Y
1
B
O5'
DC
17
B
O5'
DC
1
1
Y
2
A
O5'
DC
1
A
O5'
DC
1
1
Y
2
B
O5'
DC
17
B
O5'
DC
1
1
Y
3
A
O5'
DC
1
A
O5'
DC
1
1
Y
3
B
O5'
DC
17
B
O5'
DC
1
1
Y
1
2.69
0.30
108.30
110.99
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
2.64
0.30
108.30
110.94
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
1
4.21
0.30
108.30
112.51
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
3.07
0.30
108.30
111.37
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
3.19
0.30
108.30
111.49
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
3.17
0.30
108.30
111.47
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
3.28
0.30
108.30
111.58
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
1
3.39
0.30
108.30
111.69
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
1
2.95
0.30
108.30
111.25
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
1
2.78
0.30
108.30
111.08
A
A
A
O4'
C1'
N1
DT
DT
DT
11
11
11
N
1
3.90
0.30
108.30
112.20
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
1
3.28
0.30
108.30
111.58
A
A
A
O4'
C1'
N1
DC
DC
DC
13
13
13
N
1
3.48
0.30
108.30
111.78
A
A
A
O4'
C1'
N9
DA
DA
DA
14
14
14
N
1
3.85
0.30
108.30
112.15
A
A
A
O4'
C1'
N9
DG
DG
DG
15
15
15
N
1
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N9
DG
DG
DG
16
16
16
N
1
3.35
0.30
108.30
111.65
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
1
2.81
0.30
108.30
111.11
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
1
3.36
0.30
108.30
111.66
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
1
3.88
0.30
108.30
112.18
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
1
3.28
0.30
108.30
111.58
B
B
B
O4'
C1'
N9
DG
DG
DG
21
21
21
N
1
2.84
0.30
108.30
111.14
B
B
B
O4'
C1'
N9
DA
DA
DA
22
22
22
N
1
2.70
0.30
108.30
111.00
B
B
B
O4'
C1'
N9
DA
DA
DA
23
23
23
N
1
3.24
0.30
108.30
111.54
B
B
B
O4'
C1'
N9
DA
DA
DA
24
24
24
N
1
3.58
0.30
108.30
111.88
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
1
3.21
0.30
108.30
111.51
B
B
B
O4'
C1'
N1
DT
DT
DT
26
26
26
N
1
3.27
0.30
108.30
111.57
B
B
B
O4'
C1'
N1
DC
DC
DC
27
27
27
N
1
3.22
0.30
108.30
111.52
B
B
B
O4'
C1'
N1
DC
DC
DC
28
28
28
N
1
3.13
0.30
108.30
111.43
B
B
B
O4'
C1'
N1
DC
DC
DC
29
29
29
N
1
3.17
0.30
108.30
111.47
B
B
B
O4'
C1'
N1
DC
DC
DC
30
30
30
N
1
2.56
0.30
108.30
110.86
B
B
B
O4'
C1'
N9
DA
DA
DA
31
31
31
N
1
3.30
0.30
108.30
111.60
B
B
B
O4'
C1'
N9
DG
DG
DG
32
32
32
N
2
3.37
0.30
108.30
111.67
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
2
2.54
0.30
108.30
110.84
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
2
-5.60
0.80
105.90
100.30
A
A
A
O4'
C1'
C2'
DG
DG
DG
3
3
3
N
2
4.45
0.30
108.30
112.75
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
2
2.52
0.30
108.30
110.82
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
2
3.20
0.30
108.30
111.50
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
2
2.81
0.30
108.30
111.11
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
2
3.21
0.30
108.30
111.51
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
2
3.22
0.30
108.30
111.52
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
2
2.76
0.30
108.30
111.06
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
2
2.81
0.30
108.30
111.11
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
2
2.34
0.30
108.30
110.64
A
A
A
O4'
C1'
N1
DT
DT
DT
11
11
11
N
2
-5.22
0.80
105.90
100.68
A
A
A
O4'
C1'
C2'
DC
DC
DC
12
12
12
N
2
4.34
0.30
108.30
112.64
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
2
2.97
0.30
108.30
111.27
A
A
A
O4'
C1'
N1
DC
DC
DC
13
13
13
N
2
3.29
0.30
108.30
111.59
A
A
A
O4'
C1'
N9
DA
DA
DA
14
14
14
N
2
4.10
0.30
108.30
112.40
A
A
A
O4'
C1'
N9
DG
DG
DG
15
15
15
N
2
2.55
0.30
108.30
110.85
A
A
A
O4'
C1'
N9
DG
DG
DG
16
16
16
N
2
3.71
0.30
108.30
112.01
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
2
2.56
0.30
108.30
110.86
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
2
3.25
0.30
108.30
111.55
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
2
4.03
0.30
108.30
112.33
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
2
2.82
0.30
108.30
111.12
B
B
B
O4'
C1'
N9
DG
DG
DG
21
21
21
N
2
3.01
0.30
108.30
111.31
B
B
B
O4'
C1'
N9
DA
DA
DA
22
22
22
N
2
2.39
0.30
108.30
110.69
B
B
B
O4'
C1'
N9
DA
DA
DA
23
23
23
N
2
3.14
0.30
108.30
111.44
B
B
B
O4'
C1'
N9
DA
DA
DA
24
24
24
N
2
3.49
0.30
108.30
111.79
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
2
2.71
0.30
108.30
111.01
B
B
B
O4'
C1'
N1
DT
DT
DT
26
26
26
N
2
3.63
0.30
108.30
111.93
B
B
B
O4'
C1'
N1
DC
DC
DC
27
27
27
N
2
2.81
0.30
108.30
111.11
B
B
B
O4'
C1'
N1
DC
DC
DC
28
28
28
N
2
2.93
0.30
108.30
111.23
B
B
B
O4'
C1'
N1
DC
DC
DC
29
29
29
N
2
3.24
0.30
108.30
111.54
B
B
B
O4'
C1'
N1
DC
DC
DC
30
30
30
N
2
2.32
0.30
108.30
110.62
B
B
B
O4'
C1'
N9
DA
DA
DA
31
31
31
N
2
3.55
0.30
108.30
111.85
B
B
B
O4'
C1'
N9
DG
DG
DG
32
32
32
N
3
2.75
0.30
108.30
111.05
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
3
2.68
0.30
108.30
110.98
A
A
A
O4'
C1'
N1
DT
DT
DT
2
2
2
N
3
-5.62
0.80
105.90
100.28
A
A
A
O4'
C1'
C2'
DG
DG
DG
3
3
3
N
3
4.44
0.30
108.30
112.74
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
3
2.67
0.30
108.30
110.97
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
3
3.12
0.30
108.30
111.42
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
3
2.76
0.30
108.30
111.06
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
3
3.07
0.30
108.30
111.37
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
3
3.23
0.30
108.30
111.53
A
A
A
O4'
C1'
N1
DC
DC
DC
8
8
8
N
3
2.62
0.30
108.30
110.92
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
3
2.72
0.30
108.30
111.02
A
A
A
O4'
C1'
N1
DT
DT
DT
10
10
10
N
3
2.32
0.30
108.30
110.62
A
A
A
O4'
C1'
N1
DT
DT
DT
11
11
11
N
3
4.15
0.30
108.30
112.45
A
A
A
O4'
C1'
N1
DC
DC
DC
12
12
12
N
3
3.15
0.30
108.30
111.45
A
A
A
O4'
C1'
N1
DC
DC
DC
13
13
13
N
3
2.97
0.30
108.30
111.27
A
A
A
O4'
C1'
N9
DA
DA
DA
14
14
14
N
3
3.73
0.30
108.30
112.03
A
A
A
O4'
C1'
N9
DG
DG
DG
15
15
15
N
3
2.23
0.30
108.30
110.53
A
A
A
O4'
C1'
N9
DG
DG
DG
16
16
16
N
3
2.99
0.30
108.30
111.29
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
3
2.42
0.30
108.30
110.72
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
3
3.95
0.30
108.30
112.25
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
3
4.20
0.30
108.30
112.50
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
3
2.52
0.30
108.30
110.82
B
B
B
O4'
C1'
N9
DG
DG
DG
21
21
21
N
3
2.76
0.30
108.30
111.06
B
B
B
O4'
C1'
N9
DA
DA
DA
22
22
22
N
3
2.40
0.30
108.30
110.70
B
B
B
O4'
C1'
N9
DA
DA
DA
23
23
23
N
3
3.15
0.30
108.30
111.45
B
B
B
O4'
C1'
N9
DA
DA
DA
24
24
24
N
3
3.51
0.30
108.30
111.81
B
B
B
O4'
C1'
N9
DG
DG
DG
25
25
25
N
3
2.63
0.30
108.30
110.93
B
B
B
O4'
C1'
N1
DT
DT
DT
26
26
26
N
3
3.39
0.30
108.30
111.69
B
B
B
O4'
C1'
N1
DC
DC
DC
27
27
27
N
3
2.84
0.30
108.30
111.14
B
B
B
O4'
C1'
N1
DC
DC
DC
28
28
28
N
3
2.97
0.30
108.30
111.27
B
B
B
O4'
C1'
N1
DC
DC
DC
29
29
29
N
3
3.16
0.30
108.30
111.46
B
B
B
O4'
C1'
N1
DC
DC
DC
30
30
30
N
3
2.35
0.30
108.30
110.65
B
B
B
O4'
C1'
N9
DA
DA
DA
31
31
31
N
3
3.57
0.30
108.30
111.87
B
B
B
O4'
C1'
N9
DG
DG
DG
32
32
32
N
SOLUTION STRUCTURE OF A 16 BASE-PAIR DNA RELATED TO THE HIV-1 KAPPA B SITE
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
32
B
N1
DG
16
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
32
B
O6
DG
16
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
32
B
N2
DG
16
1_555
hydrog
WATSON-CRICK
A
DT
2
A
N3
DT
2
1_555
B
DA
31
B
N1
DA
15
1_555
hydrog
WATSON-CRICK
A
DT
2
A
O4
DT
2
1_555
B
DA
31
B
N6
DA
15
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
30
B
N3
DC
14
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
30
B
O2
DC
14
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
30
B
N4
DC
14
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
29
B
N3
DC
13
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
29
B
O2
DC
13
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
29
B
N4
DC
13
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
B
DC
28
B
N3
DC
12
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
B
DC
28
B
O2
DC
12
1_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
B
DC
28
B
N4
DC
12
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
27
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
27
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
27
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N1
DA
7
1_555
B
DT
26
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N6
DA
7
1_555
B
DT
26
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
25
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
25
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
25
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DT
9
A
N3
DT
9
1_555
B
DA
24
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
A
DT
9
A
O4
DT
9
1_555
B
DA
24
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
A
DT
10
A
N3
DT
10
1_555
B
DA
23
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
A
DT
10
A
O4
DT
10
1_555
B
DA
23
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
A
DT
11
A
N3
DT
11
1_555
B
DA
22
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
11
A
O4
DT
11
1_555
B
DA
22
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DC
12
A
N3
DC
12
1_555
B
DG
21
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
12
A
N4
DC
12
1_555
B
DG
21
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
12
A
O2
DC
12
1_555
B
DG
21
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
13
A
N3
DC
13
1_555
B
DG
20
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
13
A
N4
DC
13
1_555
B
DG
20
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
13
A
O2
DC
13
1_555
B
DG
20
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DA
14
A
N1
DA
14
1_555
B
DT
19
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
14
A
N6
DA
14
1_555
B
DT
19
B
O4
DT
3
1_555
hydrog
WATSON-CRICK
A
DG
15
A
N1
DG
15
1_555
B
DC
18
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
15
A
N2
DG
15
1_555
B
DC
18
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
15
A
O6
DG
15
1_555
B
DC
18
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
16
A
N1
DG
16
1_555
B
DC
17
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
16
A
N2
DG
16
1_555
B
DC
17
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
16
A
O6
DG
16
1_555
B
DC
17
B
N4
DC
1
1_555
DNA
DNA STRUCTURE, MODELING, DEOXYRIBONUCLEIC ACID, DNA
1KBD
PDB
1
1KBD
1KBD
PDB
2
1KBD
1
16
1KBD
1
16
1KBD
A
1
1
16
17
32
1KBD
17
32
1KBD
B
2
1
16
1
P 1