0.007360 0.000000 0.000000 0.000000 0.011515 0.000000 0.000000 0.000000 0.022232 0.00000 0.00000 0.00000 Speir, J.A. Abdel-Motal, U.M. Jondal, M. Wilson, I.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 135.870 86.840 44.980 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H13 N O2 S 163.238 n 2-AMINO-4-ETHYL SULFANYL BUTYRIC ACID L-peptide linking C6 H12 O5 164.156 alpha-L-fucopyranose alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose L-saccharide, alpha linking C6 H12 O6 180.156 beta-D-galactopyranose beta-D-galactose; D-galactose; galactose D-saccharide, beta linking C6 H12 O6 180.156 alpha-D-galactopyranose alpha-D-galactose; D-galactose; galactose; ALPHA D-GALACTOSE D-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N C N 92 N S N 93 N C N 94 N O N 95 N C N 96 N C N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 R C N 112 S C N 113 R C N 114 S C N 115 S C N 116 N C N 117 N O N 118 N O N 119 N O N 120 N O N 121 N O N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 R C N 135 R C N 136 S C N 137 R C N 138 R C N 139 N C N 140 N O N 141 N O N 142 N O N 143 N O N 144 N O N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 S C N 159 R C N 160 S C N 161 R C N 162 R C N 163 N C N 164 N O N 165 N O N 166 N O N 167 N O N 168 N O N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N N N 183 S C N 184 N C N 185 N O N 186 N C N 187 N C N 188 N C N 189 N O N 190 N N N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N O N 210 N O N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 N C N 223 N C N 224 N O N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C Y 236 N C Y 237 N N Y 238 N C Y 239 N C Y 240 N N N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N O N 253 N H N 254 N H N 255 N N N 256 S C N 257 N C N 258 N O N 259 S C N 260 N C N 261 N C N 262 N C N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C N 282 N C N 283 N C N 284 N C N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N N N 300 S C N 301 N C N 302 N O N 303 N C N 304 N C N 305 N C N 306 N C N 307 N N N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N N N 325 S C N 326 N C N 327 N O N 328 N C N 329 N C N 330 N S N 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 R C N 345 R C N 346 R C N 347 S C N 348 R C N 349 N C N 350 N C N 351 N C N 352 N N N 353 N O N 354 N O N 355 N O N 356 N O N 357 N O N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N C N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C N 402 N C N 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N N N 415 S C N 416 N C N 417 N O N 418 N C N 419 N O N 420 N O N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N N N 429 S C N 430 N C N 431 N O N 432 R C N 433 N O N 434 N C N 435 N O N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N N N 446 S C N 447 N C N 448 N O N 449 N C Y 450 N C Y 451 N C Y 452 N C Y 453 N N Y 454 N C Y 455 N C Y 456 N C Y 457 N C Y 458 N C N 459 N O N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N N N 473 S C N 474 N C N 475 N O N 476 N C Y 477 N C Y 478 N C Y 479 N C Y 480 N C Y 481 N C Y 482 N C N 483 N O N 484 N O N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N N N 497 S C N 498 N C N 499 N O N 500 N C N 501 N C N 502 N C N 503 N O N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing Y 233 N sing Y 234 N doub Y 235 N doub N 236 N sing Y 237 N sing N 238 N sing Y 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N doub N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing Y 371 N doub Y 372 N sing Y 373 N sing N 374 N sing Y 375 N doub N 376 N sing Y 377 N doub N 378 N sing Y 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N doub N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N doub N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N doub N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N doub N 436 N sing N 437 N sing N 438 N sing N 439 N sing Y 440 N doub Y 441 N sing Y 442 N sing N 443 N sing Y 444 N doub Y 445 N sing Y 446 N sing N 447 N sing Y 448 N sing Y 449 N doub N 450 N sing Y 451 N doub N 452 N sing Y 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N doub N 464 N sing N 465 N sing N 466 N sing N 467 N sing Y 468 N doub Y 469 N sing Y 470 N sing N 471 N sing Y 472 N doub N 473 N sing Y 474 N doub N 475 N sing Y 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N doub N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing US Immunity IUNIEH 2048 1074-7613 10 51 61 10.1016/S1074-7613(00)80006-0 10023770 Crystal structure of an MHC class I presented glycopeptide that generates carbohydrate-specific CTL. 1999 GW Eur.J.Immunol. EJIMAF 0794 0014-2980 26 544 Immunization with Glycosylated Kb-Binding Peptides Generates Carbohydrate- Specific, Unrestricted Cytotoxic T Cells 1996 10.2210/pdb1kbg/pdb pdb_00001kbg 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 133 1 DOUBLE-FOCUSING MIRRORS IMAGE PLATE 1996-02-01 MARRESEARCH NI FILTER SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE SIEMENS FORMS HETERODIMER WITH CHAIN L, AND THEN A TRIMOLECULAR COMPLEX WITH CHAIN P 31648.322 PROTEIN (MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I ANTIGEN H-2KB) PEPTIDE-BINDING DOMAIN 1 man polymer FORMS HETERODIMER WITH CHAIN H, AND THEN A TRIMOLECULAR COMPLEX WITH CHAIN P 11704.359 PROTEIN (BETA-2-MICROGLOBULIN) MHC ASSOCIATED LIGHT CHAIN 1 nat polymer VSV-8 DERIVED GLYCOPEPTIDE THAT FORMS A TRIMOLECULAR COMPLEX WITH CHAINS H AND L. 973.172 PROTEIN (SYNTHETIC GLYCOPEPTIDE RGY8-6H-GAL2) H-2KB-BOUND GLYCOPEPTIDE 1 syn polymer 570.542 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 342.297 alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose 1 man branched 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 18.015 water 108 nat water KB B2M no no GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGNEQSFRVDLRT LLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYL EGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGT FQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRW GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGNEQSFRVDLRT LLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYL EGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGT FQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRW H polypeptide(L) no no IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC RVKHDSMAEPKTVYWDRDM IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC RVKHDSMAEPKTVYWDRDM L polypeptide(L) no yes RGYVY(ESC)GL RGYVYMGL P polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus BALB/B fruit fly Drosophila sample TRUNCATED AFTER RESIDUE 274 MOST NUCLEATED CELLS CYTOPLASM, ER, CELL SURFACE 10090 Mus musculus SECRETED 7227 Drosophila melanogaster house mouse TRUNCATED AFTER RESIDUE 99 Mus sample MOST NUCLEATED CELLS CYTOPLASM, ER, CELL SURFACE 10090 Mus musculus BALB/B 1 2.86 57 6.4 2.3M Na/K PHOSPHATE, 2% MPD, pH 6.4 atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn struct_site struct_site_gen chem_comp database_2 struct_ref_seq_dif chem_comp_atom chem_comp_bond pdbx_initial_refinement_model chem_comp_atom chem_comp_bond repository Initial release Carbohydrate remediation repository Remediation Version format compliance Derived calculations Version format compliance Atomic model Data collection Derived calculations Structure summary Database references Structure summary Data collection Refinement description Data collection 1 0 1999-02-09 1 1 2007-10-21 1 2 2011-07-13 2 0 2020-07-29 2 1 2021-11-03 2 2 2023-08-16 2 3 2023-11-15 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.pdbx_value_order _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 NAG 100 n A NAG 1 NAG 101 n A NAG 2 FUC 102 n A FUC 3 P HGG 6 n B GAL 1 P HGG 6 n B GLA 2 LFucpa a-L-fucopyranose a-L-Fucp Fuc DGalpb b-D-galactopyranose b-D-Galp Gal DGalpa a-D-galactopyranose a-D-Galp Gal DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc BNL Y RCSB 1998-08-28 REL oligosaccharide oligosaccharide DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1- 4 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-1-2/a4-b1_a6-c1 4 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}[(6+1)][a-L-Fucp]{}}} 4 PDB-CARE LINUCS DGalpa1-4DGalpb1-ROH 5 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,2,1/[a2112h-1b_1-5][a2112h-1a_1-5]/1-2/a4-b1 5 PDB2Glycan 1.1.0 WURCS [][b-D-Galp]{[(4+1)][a-D-Galp]{}} 5 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 4 O1 HO4 sing C1 O6 FUC NAG 3 1 4 O1 HO6 sing C1 O4 GLA GAL 2 1 5 O1 HO4 sing n n n n n NAG 2-acetamido-2-deoxy-beta-D-glucopyranose HOH water VSV NUCLEOPROTEIN RESIDUES 52-59 COMMONLY REFERRED TO AS VSV-8 FROM THE VESICULAR STOMATITIS VIRUS. RESIDUE 57 IS REPLACED BY A SYNTHETIC GLYCOSYLATED AMINO ACID. sample 2VAA PDB ENTRY 2VAA PDB experimental model NAG 1 6 NAG NAG 1001 H HOH 1 7 HOH HOH 1103 H HOH 2 7 HOH HOH 1104 H HOH 4 7 HOH HOH 1105 H HOH 5 7 HOH HOH 1106 H HOH 7 7 HOH HOH 1107 H HOH 9 7 HOH HOH 1108 H HOH 10 7 HOH HOH 1109 H HOH 11 7 HOH HOH 1110 H HOH 12 7 HOH HOH 1111 H HOH 13 7 HOH HOH 1112 H HOH 14 7 HOH HOH 1113 H HOH 15 7 HOH HOH 1114 H HOH 16 7 HOH HOH 1115 H HOH 17 7 HOH HOH 1116 H HOH 18 7 HOH HOH 1117 H HOH 20 7 HOH HOH 1118 H HOH 21 7 HOH HOH 1119 H HOH 22 7 HOH HOH 1120 H HOH 23 7 HOH HOH 1121 H HOH 24 7 HOH HOH 1122 H HOH 25 7 HOH HOH 1123 H HOH 27 7 HOH HOH 1124 H HOH 28 7 HOH HOH 1125 H HOH 29 7 HOH HOH 1126 H HOH 30 7 HOH HOH 1127 H HOH 31 7 HOH HOH 1128 H HOH 33 7 HOH HOH 1129 H HOH 34 7 HOH HOH 1130 H HOH 35 7 HOH HOH 1131 H HOH 38 7 HOH HOH 1132 H HOH 39 7 HOH HOH 1133 H HOH 41 7 HOH HOH 1134 H HOH 42 7 HOH HOH 1135 H HOH 43 7 HOH HOH 1136 H HOH 44 7 HOH HOH 1137 H HOH 45 7 HOH HOH 1138 H HOH 47 7 HOH HOH 1139 H HOH 48 7 HOH HOH 1140 H HOH 50 7 HOH HOH 1141 H HOH 51 7 HOH HOH 1142 H HOH 53 7 HOH HOH 1143 H HOH 54 7 HOH HOH 1144 H HOH 55 7 HOH HOH 1145 H HOH 57 7 HOH HOH 1146 H HOH 59 7 HOH HOH 1147 H HOH 65 7 HOH HOH 1148 H HOH 66 7 HOH HOH 1149 H HOH 67 7 HOH HOH 1150 H HOH 68 7 HOH HOH 1151 H HOH 69 7 HOH HOH 1152 H HOH 70 7 HOH HOH 1153 H HOH 71 7 HOH HOH 1154 H HOH 72 7 HOH HOH 1155 H HOH 73 7 HOH HOH 1156 H HOH 74 7 HOH HOH 1157 H HOH 75 7 HOH HOH 1158 H HOH 76 7 HOH HOH 1159 H HOH 77 7 HOH HOH 1160 H HOH 78 7 HOH HOH 1161 H HOH 79 7 HOH HOH 1162 H HOH 80 7 HOH HOH 1163 H HOH 82 7 HOH HOH 1164 H HOH 83 7 HOH HOH 1165 H HOH 85 7 HOH HOH 1166 H HOH 86 7 HOH HOH 1167 H HOH 88 7 HOH HOH 1168 H HOH 89 7 HOH HOH 1169 H HOH 90 7 HOH HOH 1170 H HOH 91 7 HOH HOH 1171 H HOH 92 7 HOH HOH 1172 H HOH 93 7 HOH HOH 1173 H HOH 94 7 HOH HOH 1174 H HOH 96 7 HOH HOH 1175 H HOH 97 7 HOH HOH 1176 H HOH 100 7 HOH HOH 1177 H HOH 101 7 HOH HOH 1178 H HOH 103 7 HOH HOH 1179 H HOH 104 7 HOH HOH 1180 H HOH 105 7 HOH HOH 1181 H HOH 106 7 HOH HOH 1182 H HOH 108 7 HOH HOH 1183 H HOH 3 7 HOH HOH 100 L HOH 6 7 HOH HOH 101 L HOH 8 7 HOH HOH 102 L HOH 19 7 HOH HOH 103 L HOH 26 7 HOH HOH 104 L HOH 32 7 HOH HOH 105 L HOH 36 7 HOH HOH 106 L HOH 37 7 HOH HOH 107 L HOH 40 7 HOH HOH 108 L HOH 46 7 HOH HOH 109 L HOH 49 7 HOH HOH 110 L HOH 52 7 HOH HOH 111 L HOH 56 7 HOH HOH 112 L HOH 58 7 HOH HOH 113 L HOH 60 7 HOH HOH 114 L HOH 61 7 HOH HOH 115 L HOH 62 7 HOH HOH 116 L HOH 63 7 HOH HOH 117 L HOH 64 7 HOH HOH 118 L HOH 81 7 HOH HOH 119 L HOH 84 7 HOH HOH 120 L HOH 98 7 HOH HOH 121 L HOH 102 7 HOH HOH 122 L HOH 107 7 HOH HOH 123 L HOH 87 7 HOH HOH 87 P HOH 95 7 HOH HOH 95 P HOH 99 7 HOH HOH 99 P GLY 1 n 1 GLY 1 H PRO 2 n 2 PRO 2 H HIS 3 n 3 HIS 3 H SER 4 n 4 SER 4 H LEU 5 n 5 LEU 5 H ARG 6 n 6 ARG 6 H TYR 7 n 7 TYR 7 H PHE 8 n 8 PHE 8 H VAL 9 n 9 VAL 9 H THR 10 n 10 THR 10 H ALA 11 n 11 ALA 11 H VAL 12 n 12 VAL 12 H SER 13 n 13 SER 13 H ARG 14 n 14 ARG 14 H PRO 15 n 15 PRO 15 H GLY 16 n 16 GLY 16 H LEU 17 n 17 LEU 17 H GLY 18 n 18 GLY 18 H GLU 19 n 19 GLU 19 H PRO 20 n 20 PRO 20 H ARG 21 n 21 ARG 21 H TYR 22 n 22 TYR 22 H MET 23 n 23 MET 23 H GLU 24 n 24 GLU 24 H VAL 25 n 25 VAL 25 H GLY 26 n 26 GLY 26 H TYR 27 n 27 TYR 27 H VAL 28 n 28 VAL 28 H ASP 29 n 29 ASP 29 H ASP 30 n 30 ASP 30 H THR 31 n 31 THR 31 H GLU 32 n 32 GLU 32 H PHE 33 n 33 PHE 33 H VAL 34 n 34 VAL 34 H ARG 35 n 35 ARG 35 H PHE 36 n 36 PHE 36 H ASP 37 n 37 ASP 37 H SER 38 n 38 SER 38 H ASP 39 n 39 ASP 39 H ALA 40 n 40 ALA 40 H GLU 41 n 41 GLU 41 H ASN 42 n 42 ASN 42 H PRO 43 n 43 PRO 43 H ARG 44 n 44 ARG 44 H TYR 45 n 45 TYR 45 H GLU 46 n 46 GLU 46 H PRO 47 n 47 PRO 47 H ARG 48 n 48 ARG 48 H ALA 49 n 49 ALA 49 H ARG 50 n 50 ARG 50 H TRP 51 n 51 TRP 51 H MET 52 n 52 MET 52 H GLU 53 n 53 GLU 53 H GLN 54 n 54 GLN 54 H GLU 55 n 55 GLU 55 H GLY 56 n 56 GLY 56 H PRO 57 n 57 PRO 57 H GLU 58 n 58 GLU 58 H TYR 59 n 59 TYR 59 H TRP 60 n 60 TRP 60 H GLU 61 n 61 GLU 61 H ARG 62 n 62 ARG 62 H GLU 63 n 63 GLU 63 H THR 64 n 64 THR 64 H GLN 65 n 65 GLN 65 H LYS 66 n 66 LYS 66 H ALA 67 n 67 ALA 67 H LYS 68 n 68 LYS 68 H GLY 69 n 69 GLY 69 H ASN 70 n 70 ASN 70 H GLU 71 n 71 GLU 71 H GLN 72 n 72 GLN 72 H SER 73 n 73 SER 73 H PHE 74 n 74 PHE 74 H ARG 75 n 75 ARG 75 H VAL 76 n 76 VAL 76 H ASP 77 n 77 ASP 77 H LEU 78 n 78 LEU 78 H ARG 79 n 79 ARG 79 H THR 80 n 80 THR 80 H LEU 81 n 81 LEU 81 H LEU 82 n 82 LEU 82 H GLY 83 n 83 GLY 83 H TYR 84 n 84 TYR 84 H TYR 85 n 85 TYR 85 H ASN 86 n 86 ASN 86 H GLN 87 n 87 GLN 87 H SER 88 n 88 SER 88 H LYS 89 n 89 LYS 89 H GLY 90 n 90 GLY 90 H GLY 91 n 91 GLY 91 H SER 92 n 92 SER 92 H HIS 93 n 93 HIS 93 H THR 94 n 94 THR 94 H ILE 95 n 95 ILE 95 H GLN 96 n 96 GLN 96 H VAL 97 n 97 VAL 97 H ILE 98 n 98 ILE 98 H SER 99 n 99 SER 99 H GLY 100 n 100 GLY 100 H CYS 101 n 101 CYS 101 H GLU 102 n 102 GLU 102 H VAL 103 n 103 VAL 103 H GLY 104 n 104 GLY 104 H SER 105 n 105 SER 105 H ASP 106 n 106 ASP 106 H GLY 107 n 107 GLY 107 H ARG 108 n 108 ARG 108 H LEU 109 n 109 LEU 109 H LEU 110 n 110 LEU 110 H ARG 111 n 111 ARG 111 H GLY 112 n 112 GLY 112 H TYR 113 n 113 TYR 113 H GLN 114 n 114 GLN 114 H GLN 115 n 115 GLN 115 H TYR 116 n 116 TYR 116 H ALA 117 n 117 ALA 117 H TYR 118 n 118 TYR 118 H ASP 119 n 119 ASP 119 H GLY 120 n 120 GLY 120 H CYS 121 n 121 CYS 121 H ASP 122 n 122 ASP 122 H TYR 123 n 123 TYR 123 H ILE 124 n 124 ILE 124 H ALA 125 n 125 ALA 125 H LEU 126 n 126 LEU 126 H ASN 127 n 127 ASN 127 H GLU 128 n 128 GLU 128 H ASP 129 n 129 ASP 129 H LEU 130 n 130 LEU 130 H LYS 131 n 131 LYS 131 H THR 132 n 132 THR 132 H TRP 133 n 133 TRP 133 H THR 134 n 134 THR 134 H ALA 135 n 135 ALA 135 H ALA 136 n 136 ALA 136 H ASP 137 n 137 ASP 137 H MET 138 n 138 MET 138 H ALA 139 n 139 ALA 139 H ALA 140 n 140 ALA 140 H LEU 141 n 141 LEU 141 H ILE 142 n 142 ILE 142 H THR 143 n 143 THR 143 H LYS 144 n 144 LYS 144 H HIS 145 n 145 HIS 145 H LYS 146 n 146 LYS 146 H TRP 147 n 147 TRP 147 H GLU 148 n 148 GLU 148 H GLN 149 n 149 GLN 149 H ALA 150 n 150 ALA 150 H GLY 151 n 151 GLY 151 H GLU 152 n 152 GLU 152 H ALA 153 n 153 ALA 153 H GLU 154 n 154 GLU 154 H ARG 155 n 155 ARG 155 H LEU 156 n 156 LEU 156 H ARG 157 n 157 ARG 157 H ALA 158 n 158 ALA 158 H TYR 159 n 159 TYR 159 H LEU 160 n 160 LEU 160 H GLU 161 n 161 GLU 161 H GLY 162 n 162 GLY 162 H THR 163 n 163 THR 163 H CYS 164 n 164 CYS 164 H VAL 165 n 165 VAL 165 H GLU 166 n 166 GLU 166 H TRP 167 n 167 TRP 167 H LEU 168 n 168 LEU 168 H ARG 169 n 169 ARG 169 H ARG 170 n 170 ARG 170 H TYR 171 n 171 TYR 171 H LEU 172 n 172 LEU 172 H LYS 173 n 173 LYS 173 H ASN 174 n 174 ASN 174 H GLY 175 n 175 GLY 175 H ASN 176 n 176 ASN 176 H ALA 177 n 177 ALA 177 H THR 178 n 178 THR 178 H LEU 179 n 179 LEU 179 H LEU 180 n 180 LEU 180 H ARG 181 n 181 ARG 181 H THR 182 n 182 THR 182 H ASP 183 n 183 ASP 183 H SER 184 n 184 SER 184 H PRO 185 n 185 PRO 185 H LYS 186 n 186 LYS 186 H ALA 187 n 187 ALA 187 H HIS 188 n 188 HIS 188 H VAL 189 n 189 VAL 189 H THR 190 n 190 THR 190 H HIS 191 n 191 HIS 191 H HIS 192 n 192 HIS 192 H SER 193 n 193 SER 193 H ARG 194 n 194 ARG 194 H PRO 195 n 195 PRO 195 H GLU 196 n 196 GLU 196 H ASP 197 n 197 ASP 197 H LYS 198 n 198 LYS 198 H VAL 199 n 199 VAL 199 H THR 200 n 200 THR 200 H LEU 201 n 201 LEU 201 H ARG 202 n 202 ARG 202 H CYS 203 n 203 CYS 203 H TRP 204 n 204 TRP 204 H ALA 205 n 205 ALA 205 H LEU 206 n 206 LEU 206 H GLY 207 n 207 GLY 207 H PHE 208 n 208 PHE 208 H TYR 209 n 209 TYR 209 H PRO 210 n 210 PRO 210 H ALA 211 n 211 ALA 211 H ASP 212 n 212 ASP 212 H ILE 213 n 213 ILE 213 H THR 214 n 214 THR 214 H LEU 215 n 215 LEU 215 H THR 216 n 216 THR 216 H TRP 217 n 217 TRP 217 H GLN 218 n 218 GLN 218 H LEU 219 n 219 LEU 219 H ASN 220 n 220 ASN 220 H GLY 221 n 221 GLY 221 H GLU 222 n 222 GLU 222 H GLU 223 n 223 GLU 223 H LEU 224 n 224 LEU 224 H ILE 225 n 225 ILE 225 H GLN 226 n 226 GLN 226 H ASP 227 n 227 ASP 227 H MET 228 n 228 MET 228 H GLU 229 n 229 GLU 229 H LEU 230 n 230 LEU 230 H VAL 231 n 231 VAL 231 H GLU 232 n 232 GLU 232 H THR 233 n 233 THR 233 H ARG 234 n 234 ARG 234 H PRO 235 n 235 PRO 235 H ALA 236 n 236 ALA 236 H GLY 237 n 237 GLY 237 H ASP 238 n 238 ASP 238 H GLY 239 n 239 GLY 239 H THR 240 n 240 THR 240 H PHE 241 n 241 PHE 241 H GLN 242 n 242 GLN 242 H LYS 243 n 243 LYS 243 H TRP 244 n 244 TRP 244 H ALA 245 n 245 ALA 245 H SER 246 n 246 SER 246 H VAL 247 n 247 VAL 247 H VAL 248 n 248 VAL 248 H VAL 249 n 249 VAL 249 H PRO 250 n 250 PRO 250 H LEU 251 n 251 LEU 251 H GLY 252 n 252 GLY 252 H LYS 253 n 253 LYS 253 H GLU 254 n 254 GLU 254 H GLN 255 n 255 GLN 255 H TYR 256 n 256 TYR 256 H TYR 257 n 257 TYR 257 H THR 258 n 258 THR 258 H CYS 259 n 259 CYS 259 H HIS 260 n 260 HIS 260 H VAL 261 n 261 VAL 261 H TYR 262 n 262 TYR 262 H HIS 263 n 263 HIS 263 H GLN 264 n 264 GLN 264 H GLY 265 n 265 GLY 265 H LEU 266 n 266 LEU 266 H PRO 267 n 267 PRO 267 H GLU 268 n 268 GLU 268 H PRO 269 n 269 PRO 269 H LEU 270 n 270 LEU 270 H THR 271 n 271 THR 271 H LEU 272 n 272 LEU 272 H ARG 273 n 273 ARG 273 H TRP 274 n 274 TRP 274 H ILE 1 n 1 ILE 1 L GLN 2 n 2 GLN 2 L LYS 3 n 3 LYS 3 L THR 4 n 4 THR 4 L PRO 5 n 5 PRO 5 L GLN 6 n 6 GLN 6 L ILE 7 n 7 ILE 7 L GLN 8 n 8 GLN 8 L VAL 9 n 9 VAL 9 L TYR 10 n 10 TYR 10 L SER 11 n 11 SER 11 L ARG 12 n 12 ARG 12 L HIS 13 n 13 HIS 13 L PRO 14 n 14 PRO 14 L PRO 15 n 15 PRO 15 L GLU 16 n 16 GLU 16 L ASN 17 n 17 ASN 17 L GLY 18 n 18 GLY 18 L LYS 19 n 19 LYS 19 L PRO 20 n 20 PRO 20 L ASN 21 n 21 ASN 21 L ILE 22 n 22 ILE 22 L LEU 23 n 23 LEU 23 L ASN 24 n 24 ASN 24 L CYS 25 n 25 CYS 25 L TYR 26 n 26 TYR 26 L VAL 27 n 27 VAL 27 L THR 28 n 28 THR 28 L GLN 29 n 29 GLN 29 L PHE 30 n 30 PHE 30 L HIS 31 n 31 HIS 31 L PRO 32 n 32 PRO 32 L PRO 33 n 33 PRO 33 L HIS 34 n 34 HIS 34 L ILE 35 n 35 ILE 35 L GLU 36 n 36 GLU 36 L ILE 37 n 37 ILE 37 L GLN 38 n 38 GLN 38 L MET 39 n 39 MET 39 L LEU 40 n 40 LEU 40 L LYS 41 n 41 LYS 41 L ASN 42 n 42 ASN 42 L GLY 43 n 43 GLY 43 L LYS 44 n 44 LYS 44 L LYS 45 n 45 LYS 45 L ILE 46 n 46 ILE 46 L PRO 47 n 47 PRO 47 L LYS 48 n 48 LYS 48 L VAL 49 n 49 VAL 49 L GLU 50 n 50 GLU 50 L MET 51 n 51 MET 51 L SER 52 n 52 SER 52 L ASP 53 n 53 ASP 53 L MET 54 n 54 MET 54 L SER 55 n 55 SER 55 L PHE 56 n 56 PHE 56 L SER 57 n 57 SER 57 L LYS 58 n 58 LYS 58 L ASP 59 n 59 ASP 59 L TRP 60 n 60 TRP 60 L SER 61 n 61 SER 61 L PHE 62 n 62 PHE 62 L TYR 63 n 63 TYR 63 L ILE 64 n 64 ILE 64 L LEU 65 n 65 LEU 65 L ALA 66 n 66 ALA 66 L HIS 67 n 67 HIS 67 L THR 68 n 68 THR 68 L GLU 69 n 69 GLU 69 L PHE 70 n 70 PHE 70 L THR 71 n 71 THR 71 L PRO 72 n 72 PRO 72 L THR 73 n 73 THR 73 L GLU 74 n 74 GLU 74 L THR 75 n 75 THR 75 L ASP 76 n 76 ASP 76 L THR 77 n 77 THR 77 L TYR 78 n 78 TYR 78 L ALA 79 n 79 ALA 79 L CYS 80 n 80 CYS 80 L ARG 81 n 81 ARG 81 L VAL 82 n 82 VAL 82 L LYS 83 n 83 LYS 83 L HIS 84 n 84 HIS 84 L ASP 85 n 85 ASP 85 L SER 86 n 86 SER 86 L MET 87 n 87 MET 87 L ALA 88 n 88 ALA 88 L GLU 89 n 89 GLU 89 L PRO 90 n 90 PRO 90 L LYS 91 n 91 LYS 91 L THR 92 n 92 THR 92 L VAL 93 n 93 VAL 93 L TYR 94 n 94 TYR 94 L TRP 95 n 95 TRP 95 L ASP 96 n 96 ASP 96 L ARG 97 n 97 ARG 97 L ASP 98 n 98 ASP 98 L MET 99 n 99 MET 99 L ARG 1 n 1 ARG 1 P GLY 2 n 2 GLY 2 P TYR 3 n 3 TYR 3 P VAL 4 n 4 VAL 4 P TYR 5 n 5 TYR 5 P HGG 6 n 6 ESC 6 P GLY 7 n 7 GLY 7 P LEU 8 n 8 LEU 8 P author_and_software_defined_assembly PISA,PQS 3 trimeric 5810 -1 19210 H ASN 86 GLYCOSYLATION SITE A ASN 86 ASN H ASN 176 GLYCOSYLATION SITE A ASN 176 ASN P ESC 6 2-AMINO-4-ETHYL SULFANYL BUTYRIC ACID C ESC 6 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H O GLU 46 A O GLU 46 H N ARG 35 A N ARG 35 H O THR 31 A O THR 31 H N VAL 28 A N VAL 28 H O ARG 21 A O ARG 21 H N VAL 12 A N VAL 12 H O HIS 3 A O HIS 3 H N VAL 103 A N VAL 103 H O GLN 96 A O GLN 96 H N ALA 117 A N ALA 117 H O ALA 125 A O ALA 125 H N THR 134 A N THR 134 H O LYS 186 A O LYS 186 H N LEU 206 A N LEU 206 H O VAL 199 A O VAL 199 H N VAL 249 A N VAL 249 H O SER 246 A O SER 246 H N GLU 229 A N GLU 229 H O THR 214 A O THR 214 H N TYR 262 A N TYR 262 H O CYS 259 A O CYS 259 H N LEU 272 A N LEU 272 L O GLN 6 B O GLN 6 L N THR 28 B N THR 28 L O ASN 21 B O ASN 21 L N PHE 70 B N PHE 70 L O LEU 65 B O LEU 65 L N SER 52 B N SER 52 L O GLU 36 B O GLU 36 L N LYS 83 B N LYS 83 L O CYS 80 B O CYS 80 L N VAL 93 B N VAL 93 1 H ASP 29 70.21 -126.96 1 H ALA 40 167.49 133.71 1 H ASN 86 60.83 60.24 1 H GLN 114 -165.93 112.64 1 H TYR 123 -119.69 -75.45 1 H PRO 195 -44.78 -76.25 1 H TYR 209 -170.17 131.49 1 H PRO 210 -65.84 -177.93 1 H LEU 224 -101.76 42.31 1 H ILE 225 -69.48 61.71 1 H GLN 226 -147.97 -70.37 1 L GLU 16 -160.87 104.66 1 L HIS 31 -171.99 135.11 1 L LYS 48 -76.20 46.84 PARHCSDX.PRO TOPHCSDX.PRO SGH_3.PAR SGH_3.TOP WATER_AMMONIA.PAR TOPH3.CHO PARAM3_MOD.CHO WATER_AMMONIA.TOP 30.8 SOME PARAMETER/TOPOLOGY LIBRARIES HAVE BEEN MODIFIED IN-HOUSE TO PROVIDE MISSING OR CORRECTED SPECIFICATIONS FOR CARBOHYDRATE AND/OR PROTEIN. 0.279 0.005 0.224 0.224 2.2 18.0 2605 26120 10.0 94.0 RANDOM 1 RESTRAINED THROUGHOUT 0.0 MR PDB ENTRY 2VAA 0.38 0.30 5 0.53 0.48 2.2 18.0 108 3304 75 0 3121 0.008 1.4 26.2 1.3 2.11 1.50 3.32 2.00 3.43 2.00 4.96 2.50 0.424 0.026 0.368 2.3 266 2374 8 10.0 77.2 34.8 2.1 20.0 1KBG 28511 0 0.078 1 16.2 5.4 89.3 2.1 2.17 1.9 0.384 1 1.7 55.0 data reduction DENZO data scaling SCALEPACK model building X-PLOR refinement X-PLOR 3.851 phasing X-PLOR MHC Class I H-2KB Presented Glycopeptide RGY8-6H-GAL2 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 7 N N 7 N N H ARG 50 A ARG 50 HELX_P H GLN 54 A GLN 54 5 1 5 H PRO 57 A PRO 57 HELX_P H TYR 85 A TYR 85 1 2 29 H MET 138 A MET 138 HELX_P H ALA 150 A ALA 150 1 3 13 H GLU 152 A GLU 152 HELX_P H GLU 161 A GLU 161 1 4 10 H THR 163 A THR 163 HELX_P H ASN 174 A ASN 174 1 5 12 H ASN 176 A ASN 176 HELX_P H LEU 179 A LEU 179 1 6 4 H GLU 254 A GLU 254 HELX_P H TYR 256 A TYR 256 5 7 3 disulf 2.033 H CYS 101 A SG CYS 101 1_555 H CYS 164 A SG CYS 164 1_555 disulf 2.028 H CYS 203 A SG CYS 203 1_555 H CYS 259 A SG CYS 259 1_555 disulf 2.027 L CYS 25 B SG CYS 25 1_555 L CYS 80 B SG CYS 80 1_555 covale 1.455 one N-Glycosylation H ASN 86 A ND2 ASN 86 1_555 H NAG 1001 F C1 NAG 1_555 covale 1.451 one N-Glycosylation H ASN 176 A ND2 ASN 176 1_555 A NAG 1 D C1 NAG 1_555 covale 1.324 both P TYR 5 C C TYR 5 1_555 P ESC 6 C N ESC 6 1_555 covale 1.331 both P ESC 6 C C ESC 6 1_555 P GLY 7 C N GLY 7 1_555 covale 1.388 one P ESC 6 C CE ESC 6 1_555 B GAL 1 E O1 GAL 1_555 covale 1.389 both A NAG 1 D O4 NAG 1_555 A NAG 2 D C1 NAG 1_555 covale 1.401 both A NAG 1 D O6 NAG 1_555 A FUC 3 D C1 FUC 1_555 covale 1.395 both sing B GAL 1 E O4 GAL 1_555 B GLA 2 E C1 GLA 1_555 IMMUNE SYSTEM MHC, MAJOR HISTOCOMPATIBILITY COMPLEX, ANTIGEN PRESENTATION, GLYCOPEPTIDE, CELLULAR IMMUNITY, IMMUNOLOGY, CELL SURFACE RECEPTOR, SYNTHETIC PEPTIDE, VACCINE, IMMUNE SYSTEM H TYR 209 A TYR 209 1 H PRO 210 A PRO 210 1.02 L HIS 31 B HIS 31 1 L PRO 32 B PRO 32 0.31 HA1B_MOUSE UNP 1 P01901 B2MG_MOUSE UNP 2 P01887 NCAP_VSVIG UNP 3 P11212 22 295 1KBG 1 274 P01901 H 1 1 274 21 119 1KBG 1 99 P01887 L 2 1 99 52 59 1KBG 1 8 P11212 P 3 1 8 3 GLN engineered mutation ESC 6 1KBG P P11212 UNP 57 6 6 2 4 3 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H TYR 45 A TYR 45 H PRO 47 A PRO 47 H THR 31 A THR 31 H ASP 37 A ASP 37 H ARG 21 A ARG 21 H VAL 28 A VAL 28 H HIS 3 A HIS 3 H VAL 12 A VAL 12 H THR 94 A THR 94 H VAL 103 A VAL 103 H LEU 109 A LEU 109 H TYR 118 A TYR 118 H ILE 124 A ILE 124 H LEU 126 A LEU 126 H TRP 133 A TRP 133 H ALA 135 A ALA 135 H LYS 186 A LYS 186 H ARG 194 A ARG 194 H LYS 198 A LYS 198 H LEU 206 A LEU 206 H LYS 243 A LYS 243 H PRO 250 A PRO 250 H MET 228 A MET 228 H LEU 230 A LEU 230 H THR 214 A THR 214 H LEU 219 A LEU 219 H TYR 257 A TYR 257 H TYR 262 A TYR 262 H LEU 270 A LEU 270 H LEU 272 A LEU 272 L GLN 6 B GLN 6 L SER 11 B SER 11 L PRO 20 B PRO 20 L THR 28 B THR 28 L ILE 64 B ILE 64 L THR 71 B THR 71 L GLU 50 B GLU 50 L SER 52 B SER 52 L GLU 36 B GLU 36 L LYS 41 B LYS 41 L TYR 78 B TYR 78 L LYS 83 B LYS 83 L LYS 91 B LYS 91 L TYR 94 B TYR 94 18 P 21 21 2