0.021038 0.000000 0.000000 0.000000 0.013908 0.000000 0.000000 0.000000 0.012172 0.00000 0.00000 0.00000 Blankenfeldt, W. Kerr, I.D. Giraud, M.F. McMiken, H.J. Leonard, G.A. Whitfield, C. Messner, P. Graninger, M. Naismith, J.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 47.533 71.901 82.158 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N MG N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing UK Structure STRUE6 2005 0969-2126 10 773 786 10.1016/S0969-2126(02)00770-0 12057193 Variation on a theme of SDR. dTDP-6-deoxy-L- lyxo-4-hexulose reductase (RmlD) shows a new Mg2+-dependent dimerization mode. 2002 DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 55 2043 2046 10.1107/S0907444999012251 Overexpression, purification, crystallisation and preliminary structural study of dTDP-6-deoxy-lyxo-4-reductase (RmlD) the fourth enzyme of the dTDP-rhanose synthesis pathway,from Salmonella entrica serovar Typhimurim 1999 UK Curr.Opin.Struct.Biol. COSBEF 0801 0959-440X 10 687 696 10.1016/S0959-440X(00)00145-7 The rhamnose pathway 2000 10.2210/pdb1kbz/pdb pdb_00001kbz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2001-05-01 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 0.934 1.0 ID14-2 ESRF 0.934 SYNCHROTRON ESRF BEAMLINE ID14-2 32589.943 dTDP-glucose oxidoreductase 1.1.1.133 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 171 nat water dTDP-6-deoxy-L-lyxo-4-hexulose reductase; DTDP-4-DEHYDRORHAMNOSE REDUCTASE; DTDP-4-KETO-L-RHAMNOSE REDUCTASE; DTDP-6-DEOXY-L-MANNOSE DEHYDROGENASE; DTDP-L-RHAMNOSE SYNTHETASE; rfbA protein; TDP-rhamnose synthetase E.C.1.1.1.133 no no MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLL NATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGKGN NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGIT LALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQWELGVKRMLTEMFTTTTI MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLL NATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGKGN NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGIT LALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQWELGVKRMLTEMFTTTTI A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Salmonella Escherichia sample rfbA 602 Salmonella typhimurium 562 Escherichia coli BL21(lambda DE3)pLysS plasmid pET30 1 2.15 42.87 VAPOR DIFFUSION, SITTING DROP 8.0 HEPES, PEG 4000, magnesium chloride, pH 8.0, VAPOR DIFFUSION, SITTING DROP at 298K 298 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle pdbx_struct_special_symmetry struct_conn struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references Derived calculations 1 0 2002-06-28 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id NADH complex NADPH complex NADPH/DTDP-L-RHAMNOSE complex RCSB Y RCSB 2001-11-07 REL REL MG MAGNESIUM ION HOH water MG 501 2 MG MG 501 A HOH 1 3 HOH HOH 502 A HOH 2 3 HOH HOH 503 A HOH 3 3 HOH HOH 504 A HOH 4 3 HOH HOH 505 A HOH 5 3 HOH HOH 506 A HOH 6 3 HOH HOH 507 A HOH 7 3 HOH HOH 508 A HOH 8 3 HOH HOH 509 A HOH 9 3 HOH HOH 510 A HOH 10 3 HOH HOH 511 A HOH 11 3 HOH HOH 512 A HOH 12 3 HOH HOH 513 A HOH 13 3 HOH HOH 514 A HOH 14 3 HOH HOH 515 A HOH 15 3 HOH HOH 516 A HOH 16 3 HOH HOH 517 A HOH 17 3 HOH HOH 518 A HOH 18 3 HOH HOH 519 A HOH 19 3 HOH HOH 520 A HOH 20 3 HOH HOH 521 A HOH 21 3 HOH HOH 522 A HOH 22 3 HOH HOH 523 A HOH 23 3 HOH HOH 524 A HOH 24 3 HOH HOH 525 A HOH 25 3 HOH HOH 526 A HOH 26 3 HOH HOH 527 A HOH 27 3 HOH HOH 528 A HOH 28 3 HOH HOH 529 A HOH 29 3 HOH HOH 530 A HOH 30 3 HOH HOH 531 A HOH 31 3 HOH HOH 532 A HOH 32 3 HOH HOH 533 A HOH 33 3 HOH HOH 534 A HOH 34 3 HOH HOH 535 A HOH 35 3 HOH HOH 536 A HOH 36 3 HOH HOH 537 A HOH 37 3 HOH HOH 538 A HOH 38 3 HOH HOH 539 A HOH 39 3 HOH HOH 540 A HOH 40 3 HOH HOH 541 A HOH 41 3 HOH HOH 542 A HOH 42 3 HOH HOH 543 A HOH 43 3 HOH HOH 544 A HOH 44 3 HOH HOH 545 A HOH 45 3 HOH HOH 546 A HOH 46 3 HOH HOH 547 A HOH 47 3 HOH HOH 548 A HOH 48 3 HOH HOH 549 A HOH 49 3 HOH HOH 550 A HOH 50 3 HOH HOH 551 A HOH 51 3 HOH HOH 552 A HOH 52 3 HOH HOH 553 A HOH 53 3 HOH HOH 554 A HOH 54 3 HOH HOH 555 A HOH 55 3 HOH HOH 556 A HOH 56 3 HOH HOH 557 A HOH 57 3 HOH HOH 558 A HOH 58 3 HOH HOH 559 A HOH 59 3 HOH HOH 560 A HOH 60 3 HOH HOH 561 A HOH 61 3 HOH HOH 562 A HOH 62 3 HOH HOH 563 A HOH 63 3 HOH HOH 564 A HOH 64 3 HOH HOH 565 A HOH 65 3 HOH HOH 566 A HOH 66 3 HOH HOH 567 A HOH 67 3 HOH HOH 568 A HOH 68 3 HOH HOH 569 A HOH 69 3 HOH HOH 570 A HOH 70 3 HOH HOH 571 A HOH 71 3 HOH HOH 572 A HOH 72 3 HOH HOH 573 A HOH 73 3 HOH HOH 574 A HOH 74 3 HOH HOH 575 A HOH 75 3 HOH HOH 576 A HOH 76 3 HOH HOH 577 A HOH 77 3 HOH HOH 578 A HOH 78 3 HOH HOH 579 A HOH 79 3 HOH HOH 580 A HOH 80 3 HOH HOH 581 A HOH 81 3 HOH HOH 582 A HOH 82 3 HOH HOH 583 A HOH 83 3 HOH HOH 584 A HOH 84 3 HOH HOH 585 A HOH 85 3 HOH HOH 586 A HOH 86 3 HOH HOH 587 A HOH 87 3 HOH HOH 588 A HOH 88 3 HOH HOH 589 A HOH 89 3 HOH HOH 590 A HOH 90 3 HOH HOH 591 A HOH 91 3 HOH HOH 592 A HOH 92 3 HOH HOH 593 A HOH 93 3 HOH HOH 594 A HOH 94 3 HOH HOH 595 A HOH 95 3 HOH HOH 596 A HOH 96 3 HOH HOH 597 A HOH 97 3 HOH HOH 598 A HOH 98 3 HOH HOH 599 A HOH 99 3 HOH HOH 600 A HOH 100 3 HOH HOH 601 A HOH 101 3 HOH HOH 602 A HOH 102 3 HOH HOH 603 A HOH 103 3 HOH HOH 604 A HOH 104 3 HOH HOH 605 A HOH 105 3 HOH HOH 606 A HOH 106 3 HOH HOH 607 A HOH 107 3 HOH HOH 608 A HOH 108 3 HOH HOH 609 A HOH 109 3 HOH HOH 610 A HOH 110 3 HOH HOH 611 A HOH 111 3 HOH HOH 612 A HOH 112 3 HOH HOH 613 A HOH 113 3 HOH HOH 614 A HOH 114 3 HOH HOH 615 A HOH 115 3 HOH HOH 616 A HOH 116 3 HOH HOH 617 A HOH 117 3 HOH HOH 618 A HOH 118 3 HOH HOH 619 A HOH 119 3 HOH HOH 620 A HOH 120 3 HOH HOH 621 A HOH 121 3 HOH HOH 622 A HOH 122 3 HOH HOH 623 A HOH 123 3 HOH HOH 624 A HOH 124 3 HOH HOH 625 A HOH 125 3 HOH HOH 626 A HOH 126 3 HOH HOH 627 A HOH 127 3 HOH HOH 628 A HOH 128 3 HOH HOH 629 A HOH 129 3 HOH HOH 630 A HOH 130 3 HOH HOH 631 A HOH 131 3 HOH HOH 632 A HOH 132 3 HOH HOH 633 A HOH 133 3 HOH HOH 634 A HOH 134 3 HOH HOH 635 A HOH 135 3 HOH HOH 636 A HOH 136 3 HOH HOH 637 A HOH 137 3 HOH HOH 638 A HOH 138 3 HOH HOH 639 A HOH 139 3 HOH HOH 640 A HOH 140 3 HOH HOH 641 A HOH 141 3 HOH HOH 642 A HOH 142 3 HOH HOH 643 A HOH 143 3 HOH HOH 644 A HOH 144 3 HOH HOH 645 A HOH 145 3 HOH HOH 646 A HOH 146 3 HOH HOH 647 A HOH 147 3 HOH HOH 648 A HOH 148 3 HOH HOH 649 A HOH 149 3 HOH HOH 650 A HOH 150 3 HOH HOH 651 A HOH 151 3 HOH HOH 652 A HOH 152 3 HOH HOH 653 A HOH 153 3 HOH HOH 654 A HOH 154 3 HOH HOH 655 A HOH 155 3 HOH HOH 656 A HOH 156 3 HOH HOH 657 A HOH 157 3 HOH HOH 658 A HOH 158 3 HOH HOH 659 A HOH 159 3 HOH HOH 660 A HOH 160 3 HOH HOH 661 A HOH 161 3 HOH HOH 662 A HOH 162 3 HOH HOH 663 A HOH 163 3 HOH HOH 664 A HOH 164 3 HOH HOH 665 A HOH 165 3 HOH HOH 666 A HOH 166 3 HOH HOH 667 A HOH 167 3 HOH HOH 668 A HOH 168 3 HOH HOH 669 A HOH 169 3 HOH HOH 670 A HOH 170 3 HOH HOH 671 A HOH 171 3 HOH HOH 672 A MET 1 n 1 MET 1 A ASN 2 n 2 ASN 2 A ILE 3 n 3 ILE 3 A LEU 4 n 4 LEU 4 A LEU 5 n 5 LEU 5 A PHE 6 n 6 PHE 6 A GLY 7 n 7 GLY 7 A LYS 8 n 8 LYS 8 A THR 9 n 9 THR 9 A GLY 10 n 10 GLY 10 A GLN 11 n 11 GLN 11 A VAL 12 n 12 VAL 12 A GLY 13 n 13 GLY 13 A TRP 14 n 14 TRP 14 A GLU 15 n 15 GLU 15 A LEU 16 n 16 LEU 16 A GLN 17 n 17 GLN 17 A ARG 18 n 18 ARG 18 A SER 19 n 19 SER 19 A LEU 20 n 20 LEU 20 A ALA 21 n 21 ALA 21 A PRO 22 n 22 PRO 22 A VAL 23 n 23 VAL 23 A GLY 24 n 24 GLY 24 A ASN 25 n 25 ASN 25 A LEU 26 n 26 LEU 26 A ILE 27 n 27 ILE 27 A ALA 28 n 28 ALA 28 A LEU 29 n 29 LEU 29 A ASP 30 n 30 ASP 30 A VAL 31 n 31 VAL 31 A HIS 32 n 32 HIS 32 A SER 33 n 33 SER 33 A LYS 34 n 34 LYS 34 A GLU 35 n 35 GLU 35 A PHE 36 n 36 PHE 36 A CYS 37 n 37 CYS 37 A GLY 38 n 38 GLY 38 A ASP 39 n 39 ASP 39 A PHE 40 n 40 PHE 40 A SER 41 n 41 SER 41 A ASN 42 n 42 ASN 42 A PRO 43 n 43 PRO 43 A LYS 44 n 44 LYS 44 A GLY 45 n 45 GLY 45 A VAL 46 n 46 VAL 46 A ALA 47 n 47 ALA 47 A GLU 48 n 48 GLU 48 A THR 49 n 49 THR 49 A VAL 50 n 50 VAL 50 A ARG 51 n 51 ARG 51 A LYS 52 n 52 LYS 52 A LEU 53 n 53 LEU 53 A ARG 54 n 54 ARG 54 A PRO 55 n 55 PRO 55 A ASP 56 n 56 ASP 56 A VAL 57 n 57 VAL 57 A ILE 58 n 58 ILE 58 A VAL 59 n 59 VAL 59 A ASN 60 n 60 ASN 60 A ALA 61 n 61 ALA 61 A ALA 62 n 62 ALA 62 A ALA 63 n 63 ALA 63 A HIS 64 n 64 HIS 64 A THR 65 n 65 THR 65 A ALA 66 n 66 ALA 66 A VAL 67 n 67 VAL 67 A ASP 68 n 68 ASP 68 A LYS 69 n 69 LYS 69 A ALA 70 n 70 ALA 70 A GLU 71 n 71 GLU 71 A SER 72 n 72 SER 72 A GLU 73 n 73 GLU 73 A PRO 74 n 74 PRO 74 A GLU 75 n 75 GLU 75 A LEU 76 n 76 LEU 76 A ALA 77 n 77 ALA 77 A GLN 78 n 78 GLN 78 A LEU 79 n 79 LEU 79 A LEU 80 n 80 LEU 80 A ASN 81 n 81 ASN 81 A ALA 82 n 82 ALA 82 A THR 83 n 83 THR 83 A SER 84 n 84 SER 84 A VAL 85 n 85 VAL 85 A GLU 86 n 86 GLU 86 A ALA 87 n 87 ALA 87 A ILE 88 n 88 ILE 88 A ALA 89 n 89 ALA 89 A LYS 90 n 90 LYS 90 A ALA 91 n 91 ALA 91 A ALA 92 n 92 ALA 92 A ASN 93 n 93 ASN 93 A GLU 94 n 94 GLU 94 A THR 95 n 95 THR 95 A GLY 96 n 96 GLY 96 A ALA 97 n 97 ALA 97 A TRP 98 n 98 TRP 98 A VAL 99 n 99 VAL 99 A VAL 100 n 100 VAL 100 A HIS 101 n 101 HIS 101 A TYR 102 n 102 TYR 102 A SER 103 n 103 SER 103 A THR 104 n 104 THR 104 A ASP 105 n 105 ASP 105 A TYR 106 n 106 TYR 106 A VAL 107 n 107 VAL 107 A PHE 108 n 108 PHE 108 A PRO 109 n 109 PRO 109 A GLY 110 n 110 GLY 110 A THR 111 n 111 THR 111 A GLY 112 n 112 GLY 112 A ASP 113 n 113 ASP 113 A ILE 114 n 114 ILE 114 A PRO 115 n 115 PRO 115 A TRP 116 n 116 TRP 116 A GLN 117 n 117 GLN 117 A GLU 118 n 118 GLU 118 A THR 119 n 119 THR 119 A ASP 120 n 120 ASP 120 A ALA 121 n 121 ALA 121 A THR 122 n 122 THR 122 A SER 123 n 123 SER 123 A PRO 124 n 124 PRO 124 A LEU 125 n 125 LEU 125 A ASN 126 n 126 ASN 126 A VAL 127 n 127 VAL 127 A TYR 128 n 128 TYR 128 A GLY 129 n 129 GLY 129 A LYS 130 n 130 LYS 130 A THR 131 n 131 THR 131 A LYS 132 n 132 LYS 132 A LEU 133 n 133 LEU 133 A ALA 134 n 134 ALA 134 A GLY 135 n 135 GLY 135 A GLU 136 n 136 GLU 136 A LYS 137 n 137 LYS 137 A ALA 138 n 138 ALA 138 A LEU 139 n 139 LEU 139 A GLN 140 n 140 GLN 140 A ASP 141 n 141 ASP 141 A ASN 142 n 142 ASN 142 A CYS 143 n 143 CYS 143 A PRO 144 n 144 PRO 144 A LYS 145 n 145 LYS 145 A HIS 146 n 146 HIS 146 A LEU 147 n 147 LEU 147 A ILE 148 n 148 ILE 148 A PHE 149 n 149 PHE 149 A ARG 150 n 150 ARG 150 A THR 151 n 151 THR 151 A SER 152 n 152 SER 152 A TRP 153 n 153 TRP 153 A VAL 154 n 154 VAL 154 A TYR 155 n 155 TYR 155 A ALA 156 n 156 ALA 156 A GLY 157 n 157 GLY 157 A LYS 158 n 158 LYS 158 A GLY 159 n 159 GLY 159 A ASN 160 n 160 ASN 160 A ASN 161 n 161 ASN 161 A PHE 162 n 162 PHE 162 A ALA 163 n 163 ALA 163 A LYS 164 n 164 LYS 164 A THR 165 n 165 THR 165 A MET 166 n 166 MET 166 A LEU 167 n 167 LEU 167 A ARG 168 n 168 ARG 168 A LEU 169 n 169 LEU 169 A ALA 170 n 170 ALA 170 A LYS 171 n 171 LYS 171 A GLU 172 n 172 GLU 172 A ARG 173 n 173 ARG 173 A GLN 174 n 174 GLN 174 A THR 175 n 175 THR 175 A LEU 176 n 176 LEU 176 A SER 177 n 177 SER 177 A VAL 178 n 178 VAL 178 A ILE 179 n 179 ILE 179 A ASN 180 n 180 ASN 180 A ASP 181 n 181 ASP 181 A GLN 182 n 182 GLN 182 A TYR 183 n 183 TYR 183 A GLY 184 n 184 GLY 184 A ALA 185 n 185 ALA 185 A PRO 186 n 186 PRO 186 A THR 187 n 187 THR 187 A GLY 188 n 188 GLY 188 A ALA 189 n 189 ALA 189 A GLU 190 n 190 GLU 190 A LEU 191 n 191 LEU 191 A LEU 192 n 192 LEU 192 A ALA 193 n 193 ALA 193 A ASP 194 n 194 ASP 194 A CYS 195 n 195 CYS 195 A THR 196 n 196 THR 196 A ALA 197 n 197 ALA 197 A HIS 198 n 198 HIS 198 A ALA 199 n 199 ALA 199 A ILE 200 n 200 ILE 200 A ARG 201 n 201 ARG 201 A VAL 202 n 202 VAL 202 A ALA 203 n 203 ALA 203 A LEU 204 n 204 LEU 204 A ASN 205 n 205 ASN 205 A LYS 206 n 206 LYS 206 A PRO 207 n 207 PRO 207 A GLU 208 n 208 GLU 208 A VAL 209 n 209 VAL 209 A ALA 210 n 210 ALA 210 A GLY 211 n 211 GLY 211 A LEU 212 n 212 LEU 212 A TYR 213 n 213 TYR 213 A HIS 214 n 214 HIS 214 A LEU 215 n 215 LEU 215 A VAL 216 n 216 VAL 216 A ALA 217 n 217 ALA 217 A GLY 218 n 218 GLY 218 A GLY 219 n 219 GLY 219 A THR 220 n 220 THR 220 A THR 221 n 221 THR 221 A THR 222 n 222 THR 222 A TRP 223 n 223 TRP 223 A HIS 224 n 224 HIS 224 A ASP 225 n 225 ASP 225 A TYR 226 n 226 TYR 226 A ALA 227 n 227 ALA 227 A ALA 228 n 228 ALA 228 A LEU 229 n 229 LEU 229 A VAL 230 n 230 VAL 230 A PHE 231 n 231 PHE 231 A ASP 232 n 232 ASP 232 A GLU 233 n 233 GLU 233 A ALA 234 n 234 ALA 234 A ARG 235 n 235 ARG 235 A LYS 236 n 236 LYS 236 A ALA 237 n 237 ALA 237 A GLY 238 n 238 GLY 238 A ILE 239 n 239 ILE 239 A THR 240 n 240 THR 240 A LEU 241 n 241 LEU 241 A ALA 242 n 242 ALA 242 A LEU 243 n 243 LEU 243 A THR 244 n 244 THR 244 A GLU 245 n 245 GLU 245 A LEU 246 n 246 LEU 246 A ASN 247 n 247 ASN 247 A ALA 248 n 248 ALA 248 A VAL 249 n 249 VAL 249 A PRO 250 n 250 PRO 250 A THR 251 n 251 THR 251 A SER 252 n 252 SER 252 A ALA 253 n 253 ALA 253 A TYR 254 n 254 TYR 254 A PRO 255 n 255 PRO 255 A THR 256 n 256 THR 256 A PRO 257 n 257 PRO 257 A ALA 258 n 258 ALA 258 A SER 259 n 259 SER 259 A ARG 260 n 260 ARG 260 A PRO 261 n 261 PRO 261 A GLY 262 n 262 GLY 262 A ASN 263 n 263 ASN 263 A SER 264 n 264 SER 264 A ARG 265 n 265 ARG 265 A LEU 266 n 266 LEU 266 A ASN 267 n 267 ASN 267 A THR 268 n 268 THR 268 A GLU 269 n 269 GLU 269 A LYS 270 n 270 LYS 270 A PHE 271 n 271 PHE 271 A GLN 272 n 272 GLN 272 A ARG 273 n 273 ARG 273 A ASN 274 n 274 ASN 274 A PHE 275 n 275 PHE 275 A ASP 276 n 276 ASP 276 A LEU 277 n 277 LEU 277 A ILE 278 n 278 ILE 278 A LEU 279 n 279 LEU 279 A PRO 280 n 280 PRO 280 A GLN 281 n 281 GLN 281 A TRP 282 n 282 TRP 282 A GLU 283 n 283 GLU 283 A LEU 284 n 284 LEU 284 A GLY 285 n 285 GLY 285 A VAL 286 n 286 VAL 286 A LYS 287 n 287 LYS 287 A ARG 288 n 288 ARG 288 A MET 289 n 289 MET 289 A LEU 290 n 290 LEU 290 A THR 291 n 291 THR 291 A GLU 292 n 292 GLU 292 A MET 293 n 293 MET 293 A PHE 294 n 294 PHE 294 A THR 295 n 295 THR 295 A THR 296 n 296 THR 296 A THR 297 n 297 THR 297 A THR 298 n 298 THR 298 A n 299 299 A author_and_software_defined_assembly PISA,PQS 2 dimeric 2940 -12 24700 A HOH 506 C O HOH 1_555 A MG 501 B MG MG 1_555 A HOH 506 C O HOH 2_555 178.6 A HOH 506 C O HOH 1_555 A MG 501 B MG MG 1_555 A HOH 508 C O HOH 1_555 90.9 A HOH 506 C O HOH 2_555 A MG 501 B MG MG 1_555 A HOH 508 C O HOH 1_555 90.2 A HOH 506 C O HOH 1_555 A MG 501 B MG MG 1_555 A HOH 508 C O HOH 2_555 91.2 A HOH 506 C O HOH 2_555 A MG 501 B MG MG 1_555 A HOH 508 C O HOH 2_555 89.6 A HOH 508 C O HOH 1_555 A MG 501 B MG MG 1_555 A HOH 508 C O HOH 2_555 87.3 A HOH 506 C O HOH 1_555 A MG 501 B MG MG 1_555 A HOH 555 C O HOH 1_555 96.7 A HOH 506 C O HOH 2_555 A MG 501 B MG MG 1_555 A HOH 555 C O HOH 1_555 82.4 A HOH 508 C O HOH 1_555 A MG 501 B MG MG 1_555 A HOH 555 C O HOH 1_555 93.5 A HOH 508 C O HOH 2_555 A MG 501 B MG MG 1_555 A HOH 555 C O HOH 1_555 172.0 A HOH 506 C O HOH 1_555 A MG 501 B MG MG 1_555 A HOH 555 C O HOH 2_555 83.5 A HOH 506 C O HOH 2_555 A MG 501 B MG MG 1_555 A HOH 555 C O HOH 2_555 95.4 A HOH 508 C O HOH 1_555 A MG 501 B MG MG 1_555 A HOH 555 C O HOH 2_555 174.4 A HOH 508 C O HOH 2_555 A MG 501 B MG MG 1_555 A HOH 555 C O HOH 2_555 93.3 A HOH 555 C O HOH 1_555 A MG 501 B MG MG 1_555 A HOH 555 C O HOH 2_555 86.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -x,-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O ASN 25 A O ASN 25 A N ILE 3 A N ILE 3 A N LEU 4 A N LEU 4 A O VAL 57 A O VAL 57 A N ILE 58 A N ILE 58 A O VAL 100 A O VAL 100 A N SER 103 A N SER 103 A O PHE 149 A O PHE 149 A N ILE 148 A N ILE 148 A O TYR 213 A O TYR 213 A N TYR 155 A N TYR 155 A O THR 187 A O THR 187 A N VAL 178 A N VAL 178 A O ASN 247 A O ASN 247 A N GLY 184 A N GLY 184 A O THR 221 A O THR 221 1 A MG 501 B MG 1 A HOH 502 C HOH 1 A HOH 503 C HOH 1 A HOH 504 C HOH 1 A HOH 505 C HOH 1 A ILE 299 A ILE 299 1 Y 1 5.86 0.90 118.30 124.16 A A A CB CG OD2 ASP ASP ASP 120 120 120 N 1 4.17 0.50 120.30 124.47 A A A NE CZ NH1 ARG ARG ARG 201 201 201 N 1 -5.84 0.50 120.30 114.46 A A A NE CZ NH2 ARG ARG ARG 201 201 201 N 1 6.46 0.90 118.30 124.76 A A A CB CG OD2 ASP ASP ASP 276 276 276 N 1 A A O O HOH HOH 647 647 2.15 1_555 2_555 1 A ASN 42 -114.25 75.55 1 A ALA 82 -130.07 -62.23 1 A SER 103 -133.45 -159.71 1 A PRO 109 -77.64 -111.42 1 A THR 111 -154.37 85.30 1 A ASP 113 84.18 -55.98 1 A LEU 243 -36.16 127.11 1 A THR 295 -109.92 59.96 33.39 3.69 0.00 0.00 -3.35 0.00 -0.33 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.2560000 0.1890000 0.1939000 0.1920000 2.20 81.65 730 14547 13577 5.1 96.12 8.595 0.224 0.247 RANDOM 1 THROUGHOUT 0 MAD 0.348 0.247 BABINET MODEL WITH MASK. PARAMETERS FOR MASK CALCULATION: VDW PROBE RADIUS: 1.40; ION PROBE RADIUS: 0.80; SHRINKAGE RADIUS: 0.80 0.246 0.353 2.20 81.65 171 2459 1 0 2287 0.015 0.021 1.521 1.944 0.760 1.500 1.341 2.000 1.855 3.00 2.924 4.50 0.2190000 0.2230000 2.26 31 779 20 47 2.21 54.23 1KBZ 14547 14547 2.9 0.0720000 1 4.7 11.8 99.4 0.2490000 2.21 2.27 2.9 1 5.4 92 phasing SOLVE refinement REFMAC 5.0 data reduction MOSFLM data scaling CCP4 (SCALA) Crystal Structure of apo-dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) from Salmonella enterica serovar Typhimurium 1 N N 2 N N 3 N N The biological assembly is a dimer generated by the the two-fold crystallographic c-axis: -x, -y, z. A GLY 10 A GLY 10 HELX_P A LEU 20 A LEU 20 1 1 11 A ASN 42 A ASN 42 HELX_P A ARG 54 A ARG 54 1 2 13 A ALA 66 A ALA 66 HELX_P A GLU 73 A GLU 73 1 3 8 A GLU 73 A GLU 73 HELX_P A ALA 82 A ALA 82 1 4 10 A ALA 82 A ALA 82 HELX_P A GLY 96 A GLY 96 1 5 15 A TYR 106 A TYR 106 HELX_P A PHE 108 A PHE 108 5 6 3 A ASN 126 A ASN 126 HELX_P A CYS 143 A CYS 143 1 7 18 A ASN 161 A ASN 161 HELX_P A ARG 173 A ARG 173 1 8 13 A ALA 189 A ALA 189 HELX_P A LYS 206 A LYS 206 1 9 18 A PRO 207 A PRO 207 HELX_P A ALA 210 A ALA 210 5 10 4 A TRP 223 A TRP 223 HELX_P A ALA 237 A ALA 237 1 11 15 A THR 268 A THR 268 HELX_P A ASP 276 A ASP 276 1 12 9 A GLN 281 A GLN 281 HELX_P A THR 295 A THR 295 1 13 15 metalc 2.180 A MG 501 B MG MG 1_555 A HOH 506 C O HOH 1_555 metalc 2.226 A MG 501 B MG MG 1_555 A HOH 506 C O HOH 2_555 metalc 2.248 A MG 501 B MG MG 1_555 A HOH 508 C O HOH 1_555 metalc 2.254 A MG 501 B MG MG 1_555 A HOH 508 C O HOH 2_555 metalc 2.143 A MG 501 B MG MG 1_555 A HOH 555 C O HOH 1_555 metalc 2.144 A MG 501 B MG MG 1_555 A HOH 555 C O HOH 2_555 OXIDOREDUCTASE Rossman-fold, sugar-nucleotide-binding domain, OXIDOREDUCTASE RFBD_SALTY UNP 1 1 P26392 MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLL NATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGKGN NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGIT LALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQWELGVKRMLTEMFTTTTI 1 299 1KBZ 1 299 P26392 A 1 1 299 6 2 2 2 parallel parallel parallel parallel parallel parallel parallel anti-parallel A ASN 25 A ASN 25 A ALA 28 A ALA 28 A ASN 2 A ASN 2 A PHE 6 A PHE 6 A VAL 57 A VAL 57 A ASN 60 A ASN 60 A TRP 98 A TRP 98 A THR 104 A THR 104 A HIS 146 A HIS 146 A THR 151 A THR 151 A GLY 211 A GLY 211 A HIS 214 A HIS 214 A VAL 154 A VAL 154 A TYR 155 A TYR 155 A THR 187 A THR 187 A GLY 188 A GLY 188 A THR 175 A THR 175 A ILE 179 A ILE 179 A GLU 245 A GLU 245 A VAL 249 A VAL 249 A TYR 183 A TYR 183 A GLY 184 A GLY 184 A THR 221 A THR 221 A THR 222 A THR 222 BINDING SITE FOR RESIDUE MG A 501 A MG 501 Software 6 A HOH 506 C HOH 6 1_555 A HOH 506 C HOH 6 2_555 A HOH 508 C HOH 6 2_555 A HOH 508 C HOH 6 1_555 A HOH 555 C HOH 6 2_555 A HOH 555 C HOH 6 1_555 18 orthorhombic P 21 21 2