0.011210
0.000000
0.000979
0.000000
0.017117
0.000000
0.000000
0.000000
0.009788
0.00000
0.00000
0.00000
Chen, C.C.
Howard, A.
Herzberg, O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.0
94.99
90.0
89.21
58.42
102.55
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H5 O6 P
168.042
PHOSPHONOPYRUVATE
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
MG
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
C
N
272
N
O
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
O
N
277
N
P
N
278
N
O
N
279
N
O
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
N
291
N
C
N
292
N
C
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
O
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
S
N
318
N
O
N
319
N
O
N
320
N
O
N
321
N
O
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
R
C
N
327
N
O
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
N
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
N
377
N
O
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
N
395
N
C
N
396
N
C
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
Y
333
N
doub
Y
334
N
sing
Y
335
N
sing
N
336
N
sing
Y
337
N
doub
Y
338
N
sing
Y
339
N
sing
N
340
N
sing
Y
341
N
sing
Y
342
N
doub
N
343
N
sing
Y
344
N
doub
N
345
N
sing
Y
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
41
780
787
10.1021/bi011799+
11790099
Pyruvate site of pyruvate phosphate dikinase: crystal structure of the enzyme-phosphonopyruvate complex, and mutant analysis
2002
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
93
2652
2657
10.1073/pnas.93.7.2652
SWIVELING-DOMAIN MECHANISM FOR ENZYMATIC PHOSPHOTRANSFER BETWEEN REMOTE REACTION SITES
1996
US
Biochemistry
BICHAW
0033
0006-2960
37
13463
13474
10.1021/bi980920i
Location of the Phosphate Binding Site within Clostridium Symbiosum Pyruvate Phosphate dikinase
1998
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
275
41156
41165
10.1074/jbc.M006149200
Identification of Domain-Domain Docking Sites within Clostridium Symbiosum Pyruvate Phosphate Dikinase by Amino Acid Replacement
2000
10.2210/pdb1kc7/pdb
pdb_00001kc7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirror
CCD
2001-03-06
MARRESEARCH
CRYOGENITCALLY-COOLED SI(111) DOUBLE CRYSTAL system
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
17-ID
APS
1.0
SYNCHROTRON
APS BEAMLINE 17-ID
96640.148
pyruvate phosphate dikinase
2.7.9.1
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
96.063
SULFATE ION
4
syn
non-polymer
168.042
PHOSPHONOPYRUVATE
1
syn
non-polymer
PPDK
no
no
AKWVYKFEEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQITQEIQDQIFEAITWLEELNGKKFG
DTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEGFAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKE
EKGVHFDTDLTADDLKELAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVNVQT
MVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDMPDCYKQFMDLAMKLEKHFRDMQD
MEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGMITEEEAVVRIEAKSLDQLLHPTFNPAALKAGEVIGSALPASPG
AAAGKVYFTADEAKAAHEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMTSHAAVVARGMGTCCVSGCGEIKINEEAK
TFELGGHTFAEGDYISLDGSTGKIYKGDIETQEASVSGSFERIMVWADKFRTLKVRTNADTPEDTLNAVKLGAEGIGLCR
TEHMFFEADRIMKIRKMILSDSVEAREEALNELIPFQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQAELAKNM
GLTLAEVKAKVDELHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKELKFVKDVV
VEVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKFLDSYYKAKIYESDPFA
RLDQTGVGQLVEMAVKKGRQTRPGLKCGICGEHGGDPSSVEFCHKVGLNYVSCSPFRVPIARLAAAQAALNNK
AKWVYKFEEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQITQEIQDQIFEAITWLEELNGKKFG
DTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEGFAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKE
EKGVHFDTDLTADDLKELAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVNVQT
MVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDMPDCYKQFMDLAMKLEKHFRDMQD
MEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGMITEEEAVVRIEAKSLDQLLHPTFNPAALKAGEVIGSALPASPG
AAAGKVYFTADEAKAAHEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMTSHAAVVARGMGTCCVSGCGEIKINEEAK
TFELGGHTFAEGDYISLDGSTGKIYKGDIETQEASVSGSFERIMVWADKFRTLKVRTNADTPEDTLNAVKLGAEGIGLCR
TEHMFFEADRIMKIRKMILSDSVEAREEALNELIPFQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQAELAKNM
GLTLAEVKAKVDELHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKELKFVKDVV
VEVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKFLDSYYKAKIYESDPFA
RLDQTGVGQLVEMAVKKGRQTRPGLKCGICGEHGGDPSSVEFCHKVGLNYVSCSPFRVPIARLAAAQAALNNK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
n
n
n
n
n
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n
n
n
n
n
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n
n
n
n
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n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Clostridium
Escherichia
sample
PPDK
1512
Clostridium symbiosum
562
Escherichia coli
JM 101
plasmid
PACYC184-D12
1
2.75
55.33
VAPOR DIFFUSION, HANGING DROP
7.0
54% saturated ammonium sulfate, 100mM Hepes buffer (pH 7.0), 9mg/ml protein solution consisting of: 20mM imidazole buffer (pH 6.5), 100mM KCl, 40mM phosphonopyruvate, 5mM MgCl2, 0.1mM EDTA, 1mM DTT, VAPOR DIFFUSION, HANGING DROP, temperature 303K
303
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
software
struct_conn
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-01-30
1
1
2008-04-27
1
2
2011-07-13
1
3
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_software.name
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1dik is pyruvate phosphate dikinase (room temperature data).
1kbl is pyruvate phosphate dikinase (100K synchrotron data).
RCSB
Y
RCSB
2001-11-07
REL
REL
MG
MAGNESIUM ION
SO4
SULFATE ION
PPR
PHOSPHONOPYRUVATE
1DIK
PDB
experimental model
MG
1001
2
MG
MG
1001
A
SO4
1002
3
SO4
SO4
1002
A
SO4
1003
3
SO4
SO4
1003
A
SO4
1004
3
SO4
SO4
1004
A
SO4
1005
3
SO4
SO4
1005
A
PPR
1000
4
PPR
PPR
1000
A
ALA
2
n
1
ALA
2
A
LYS
3
n
2
LYS
3
A
TRP
4
n
3
TRP
4
A
VAL
5
n
4
VAL
5
A
TYR
6
n
5
TYR
6
A
LYS
7
n
6
LYS
7
A
PHE
8
n
7
PHE
8
A
GLU
9
n
8
GLU
9
A
GLU
10
n
9
GLU
10
A
GLY
11
n
10
GLY
11
A
ASN
12
n
11
ASN
12
A
ALA
13
n
12
ALA
13
A
SER
14
n
13
SER
14
A
MET
15
n
14
MET
15
A
ARG
16
n
15
ARG
16
A
ASN
17
n
16
ASN
17
A
LEU
18
n
17
LEU
18
A
LEU
19
n
18
LEU
19
A
GLY
20
n
19
GLY
20
A
GLY
21
n
20
GLY
21
A
LYS
22
n
21
LYS
22
A
GLY
23
n
22
GLY
23
A
CYS
24
n
23
CYS
24
A
ASN
25
n
24
ASN
25
A
LEU
26
n
25
LEU
26
A
ALA
27
n
26
ALA
27
A
GLU
28
n
27
GLU
28
A
MET
29
n
28
MET
29
A
THR
30
n
29
THR
30
A
ILE
31
n
30
ILE
31
A
LEU
32
n
31
LEU
32
A
GLY
33
n
32
GLY
33
A
MET
34
n
33
MET
34
A
PRO
35
n
34
PRO
35
A
ILE
36
n
35
ILE
36
A
PRO
37
n
36
PRO
37
A
GLN
38
n
37
GLN
38
A
GLY
39
n
38
GLY
39
A
PHE
40
n
39
PHE
40
A
THR
41
n
40
THR
41
A
VAL
42
n
41
VAL
42
A
THR
43
n
42
THR
43
A
THR
44
n
43
THR
44
A
GLU
45
n
44
GLU
45
A
ALA
46
n
45
ALA
46
A
CYS
47
n
46
CYS
47
A
THR
48
n
47
THR
48
A
GLU
49
n
48
GLU
49
A
TYR
50
n
49
TYR
50
A
TYR
51
n
50
TYR
51
A
ASN
52
n
51
ASN
52
A
SER
53
n
52
SER
53
A
GLY
54
n
53
GLY
54
A
LYS
55
n
54
LYS
55
A
GLN
56
n
55
GLN
56
A
ILE
57
n
56
ILE
57
A
THR
58
n
57
THR
58
A
GLN
59
n
58
GLN
59
A
GLU
60
n
59
GLU
60
A
ILE
61
n
60
ILE
61
A
GLN
62
n
61
GLN
62
A
ASP
63
n
62
ASP
63
A
GLN
64
n
63
GLN
64
A
ILE
65
n
64
ILE
65
A
PHE
66
n
65
PHE
66
A
GLU
67
n
66
GLU
67
A
ALA
68
n
67
ALA
68
A
ILE
69
n
68
ILE
69
A
THR
70
n
69
THR
70
A
TRP
71
n
70
TRP
71
A
LEU
72
n
71
LEU
72
A
GLU
73
n
72
GLU
73
A
GLU
74
n
73
GLU
74
A
LEU
75
n
74
LEU
75
A
ASN
76
n
75
ASN
76
A
GLY
77
n
76
GLY
77
A
LYS
78
n
77
LYS
78
A
LYS
79
n
78
LYS
79
A
PHE
80
n
79
PHE
80
A
GLY
81
n
80
GLY
81
A
ASP
82
n
81
ASP
82
A
THR
83
n
82
THR
83
A
GLU
84
n
83
GLU
84
A
ASP
85
n
84
ASP
85
A
PRO
86
n
85
PRO
86
A
LEU
87
n
86
LEU
87
A
LEU
88
n
87
LEU
88
A
VAL
89
n
88
VAL
89
A
SER
90
n
89
SER
90
A
VAL
91
n
90
VAL
91
A
ARG
92
n
91
ARG
92
A
SER
93
n
92
SER
93
A
GLY
94
n
93
GLY
94
A
ALA
95
n
94
ALA
95
A
ARG
96
n
95
ARG
96
A
ALA
97
n
96
ALA
97
A
SER
98
n
97
SER
98
A
MET
99
n
98
MET
99
A
PRO
100
n
99
PRO
100
A
GLY
101
n
100
GLY
101
A
MET
102
n
101
MET
102
A
MET
103
n
102
MET
103
A
ASP
104
n
103
ASP
104
A
THR
105
n
104
THR
105
A
ILE
106
n
105
ILE
106
A
LEU
107
n
106
LEU
107
A
ASN
108
n
107
ASN
108
A
LEU
109
n
108
LEU
109
A
GLY
110
n
109
GLY
110
A
LEU
111
n
110
LEU
111
A
ASN
112
n
111
ASN
112
A
ASP
113
n
112
ASP
113
A
VAL
114
n
113
VAL
114
A
ALA
115
n
114
ALA
115
A
VAL
116
n
115
VAL
116
A
GLU
117
n
116
GLU
117
A
GLY
118
n
117
GLY
118
A
PHE
119
n
118
PHE
119
A
ALA
120
n
119
ALA
120
A
LYS
121
n
120
LYS
121
A
LYS
122
n
121
LYS
122
A
THR
123
n
122
THR
123
A
GLY
124
n
123
GLY
124
A
ASN
125
n
124
ASN
125
A
PRO
126
n
125
PRO
126
A
ARG
127
n
126
ARG
127
A
PHE
128
n
127
PHE
128
A
ALA
129
n
128
ALA
129
A
TYR
130
n
129
TYR
130
A
ASP
131
n
130
ASP
131
A
SER
132
n
131
SER
132
A
TYR
133
n
132
TYR
133
A
ARG
134
n
133
ARG
134
A
ARG
135
n
134
ARG
135
A
PHE
136
n
135
PHE
136
A
ILE
137
n
136
ILE
137
A
GLN
138
n
137
GLN
138
A
MET
139
n
138
MET
139
A
TYR
140
n
139
TYR
140
A
SER
141
n
140
SER
141
A
ASP
142
n
141
ASP
142
A
VAL
143
n
142
VAL
143
A
VAL
144
n
143
VAL
144
A
MET
145
n
144
MET
145
A
GLU
146
n
145
GLU
146
A
VAL
147
n
146
VAL
147
A
PRO
148
n
147
PRO
148
A
LYS
149
n
148
LYS
149
A
SER
150
n
149
SER
150
A
HIS
151
n
150
HIS
151
A
PHE
152
n
151
PHE
152
A
GLU
153
n
152
GLU
153
A
LYS
154
n
153
LYS
154
A
ILE
155
n
154
ILE
155
A
ILE
156
n
155
ILE
156
A
ASP
157
n
156
ASP
157
A
ALA
158
n
157
ALA
158
A
MET
159
n
158
MET
159
A
LYS
160
n
159
LYS
160
A
GLU
161
n
160
GLU
161
A
GLU
162
n
161
GLU
162
A
LYS
163
n
162
LYS
163
A
GLY
164
n
163
GLY
164
A
VAL
165
n
164
VAL
165
A
HIS
166
n
165
HIS
166
A
PHE
167
n
166
PHE
167
A
ASP
168
n
167
ASP
168
A
THR
169
n
168
THR
169
A
ASP
170
n
169
ASP
170
A
LEU
171
n
170
LEU
171
A
THR
172
n
171
THR
172
A
ALA
173
n
172
ALA
173
A
ASP
174
n
173
ASP
174
A
ASP
175
n
174
ASP
175
A
LEU
176
n
175
LEU
176
A
LYS
177
n
176
LYS
177
A
GLU
178
n
177
GLU
178
A
LEU
179
n
178
LEU
179
A
ALA
180
n
179
ALA
180
A
GLU
181
n
180
GLU
181
A
LYS
182
n
181
LYS
182
A
PHE
183
n
182
PHE
183
A
LYS
184
n
183
LYS
184
A
ALA
185
n
184
ALA
185
A
VAL
186
n
185
VAL
186
A
TYR
187
n
186
TYR
187
A
LYS
188
n
187
LYS
188
A
GLU
189
n
188
GLU
189
A
ALA
190
n
189
ALA
190
A
MET
191
n
190
MET
191
A
ASN
192
n
191
ASN
192
A
GLY
193
n
192
GLY
193
A
GLU
194
n
193
GLU
194
A
GLU
195
n
194
GLU
195
A
PHE
196
n
195
PHE
196
A
PRO
197
n
196
PRO
197
A
GLN
198
n
197
GLN
198
A
GLU
199
n
198
GLU
199
A
PRO
200
n
199
PRO
200
A
LYS
201
n
200
LYS
201
A
ASP
202
n
201
ASP
202
A
GLN
203
n
202
GLN
203
A
LEU
204
n
203
LEU
204
A
MET
205
n
204
MET
205
A
GLY
206
n
205
GLY
206
A
ALA
207
n
206
ALA
207
A
VAL
208
n
207
VAL
208
A
LYS
209
n
208
LYS
209
A
ALA
210
n
209
ALA
210
A
VAL
211
n
210
VAL
211
A
PHE
212
n
211
PHE
212
A
ARG
213
n
212
ARG
213
A
SER
214
n
213
SER
214
A
TRP
215
n
214
TRP
215
A
ASP
216
n
215
ASP
216
A
ASN
217
n
216
ASN
217
A
PRO
218
n
217
PRO
218
A
ARG
219
n
218
ARG
219
A
ALA
220
n
219
ALA
220
A
ILE
221
n
220
ILE
221
A
VAL
222
n
221
VAL
222
A
TYR
223
n
222
TYR
223
A
ARG
224
n
223
ARG
224
A
ARG
225
n
224
ARG
225
A
MET
226
n
225
MET
226
A
ASN
227
n
226
ASN
227
A
ASP
228
n
227
ASP
228
A
ILE
229
n
228
ILE
229
A
PRO
230
n
229
PRO
230
A
GLY
231
n
230
GLY
231
A
ASP
232
n
231
ASP
232
A
TRP
233
n
232
TRP
233
A
GLY
234
n
233
GLY
234
A
THR
235
n
234
THR
235
A
ALA
236
n
235
ALA
236
A
VAL
237
n
236
VAL
237
A
ASN
238
n
237
ASN
238
A
VAL
239
n
238
VAL
239
A
GLN
240
n
239
GLN
240
A
THR
241
n
240
THR
241
A
MET
242
n
241
MET
242
A
VAL
243
n
242
VAL
243
A
PHE
244
n
243
PHE
244
A
GLY
245
n
244
GLY
245
A
ASN
246
n
245
ASN
246
A
LYS
247
n
246
LYS
247
A
GLY
248
n
247
GLY
248
A
GLU
249
n
248
GLU
249
A
THR
250
n
249
THR
250
A
SER
251
n
250
SER
251
A
GLY
252
n
251
GLY
252
A
THR
253
n
252
THR
253
A
GLY
254
n
253
GLY
254
A
VAL
255
n
254
VAL
255
A
ALA
256
n
255
ALA
256
A
PHE
257
n
256
PHE
257
A
THR
258
n
257
THR
258
A
ARG
259
n
258
ARG
259
A
ASN
260
n
259
ASN
260
A
PRO
261
n
260
PRO
261
A
SER
262
n
261
SER
262
A
THR
263
n
262
THR
263
A
GLY
264
n
263
GLY
264
A
GLU
265
n
264
GLU
265
A
LYS
266
n
265
LYS
266
A
GLY
267
n
266
GLY
267
A
ILE
268
n
267
ILE
268
A
TYR
269
n
268
TYR
269
A
GLY
270
n
269
GLY
270
A
GLU
271
n
270
GLU
271
A
TYR
272
n
271
TYR
272
A
LEU
273
n
272
LEU
273
A
ILE
274
n
273
ILE
274
A
ASN
275
n
274
ASN
275
A
ALA
276
n
275
ALA
276
A
GLN
277
n
276
GLN
277
A
GLY
278
n
277
GLY
278
A
GLU
279
n
278
GLU
279
A
ASP
280
n
279
ASP
280
A
VAL
281
n
280
VAL
281
A
VAL
282
n
281
VAL
282
A
ALA
283
n
282
ALA
283
A
GLY
284
n
283
GLY
284
A
VAL
285
n
284
VAL
285
A
ARG
286
n
285
ARG
286
A
THR
287
n
286
THR
287
A
PRO
288
n
287
PRO
288
A
GLN
289
n
288
GLN
289
A
PRO
290
n
289
PRO
290
A
ILE
291
n
290
ILE
291
A
THR
292
n
291
THR
292
A
GLN
293
n
292
GLN
293
A
LEU
294
n
293
LEU
294
A
GLU
295
n
294
GLU
295
A
ASN
296
n
295
ASN
296
A
ASP
297
n
296
ASP
297
A
MET
298
n
297
MET
298
A
PRO
299
n
298
PRO
299
A
ASP
300
n
299
ASP
300
A
CYS
301
n
300
CYS
301
A
TYR
302
n
301
TYR
302
A
LYS
303
n
302
LYS
303
A
GLN
304
n
303
GLN
304
A
PHE
305
n
304
PHE
305
A
MET
306
n
305
MET
306
A
ASP
307
n
306
ASP
307
A
LEU
308
n
307
LEU
308
A
ALA
309
n
308
ALA
309
A
MET
310
n
309
MET
310
A
LYS
311
n
310
LYS
311
A
LEU
312
n
311
LEU
312
A
GLU
313
n
312
GLU
313
A
LYS
314
n
313
LYS
314
A
HIS
315
n
314
HIS
315
A
PHE
316
n
315
PHE
316
A
ARG
317
n
316
ARG
317
A
ASP
318
n
317
ASP
318
A
MET
319
n
318
MET
319
A
GLN
320
n
319
GLN
320
A
ASP
321
n
320
ASP
321
A
MET
322
n
321
MET
322
A
GLU
323
n
322
GLU
323
A
PHE
324
n
323
PHE
324
A
THR
325
n
324
THR
325
A
ILE
326
n
325
ILE
326
A
GLU
327
n
326
GLU
327
A
GLU
328
n
327
GLU
328
A
GLY
329
n
328
GLY
329
A
LYS
330
n
329
LYS
330
A
LEU
331
n
330
LEU
331
A
TYR
332
n
331
TYR
332
A
PHE
333
n
332
PHE
333
A
LEU
334
n
333
LEU
334
A
GLN
335
n
334
GLN
335
A
THR
336
n
335
THR
336
A
ARG
337
n
336
ARG
337
A
ASN
338
n
337
ASN
338
A
GLY
339
n
338
GLY
339
A
LYS
340
n
339
LYS
340
A
ARG
341
n
340
ARG
341
A
THR
342
n
341
THR
342
A
ALA
343
n
342
ALA
343
A
PRO
344
n
343
PRO
344
A
ALA
345
n
344
ALA
345
A
ALA
346
n
345
ALA
346
A
LEU
347
n
346
LEU
347
A
GLN
348
n
347
GLN
348
A
ILE
349
n
348
ILE
349
A
ALA
350
n
349
ALA
350
A
CYS
351
n
350
CYS
351
A
ASP
352
n
351
ASP
352
A
LEU
353
n
352
LEU
353
A
VAL
354
n
353
VAL
354
A
ASP
355
n
354
ASP
355
A
GLU
356
n
355
GLU
356
A
GLY
357
n
356
GLY
357
A
MET
358
n
357
MET
358
A
ILE
359
n
358
ILE
359
A
THR
360
n
359
THR
360
A
GLU
361
n
360
GLU
361
A
GLU
362
n
361
GLU
362
A
GLU
363
n
362
GLU
363
A
ALA
364
n
363
ALA
364
A
VAL
365
n
364
VAL
365
A
VAL
366
n
365
VAL
366
A
ARG
367
n
366
ARG
367
A
ILE
368
n
367
ILE
368
A
GLU
369
n
368
GLU
369
A
ALA
370
n
369
ALA
370
A
LYS
371
n
370
LYS
371
A
SER
372
n
371
SER
372
A
LEU
373
n
372
LEU
373
A
ASP
374
n
373
ASP
374
A
GLN
375
n
374
GLN
375
A
LEU
376
n
375
LEU
376
A
LEU
377
n
376
LEU
377
A
HIS
378
n
377
HIS
378
A
PRO
379
n
378
PRO
379
A
THR
380
n
379
THR
380
A
PHE
381
n
380
PHE
381
A
ASN
382
n
381
ASN
382
A
PRO
383
n
382
PRO
383
A
ALA
384
n
383
ALA
384
A
ALA
385
n
384
ALA
385
A
LEU
386
n
385
LEU
386
A
LYS
387
n
386
LYS
387
A
ALA
388
n
387
ALA
388
A
GLY
389
n
388
GLY
389
A
GLU
390
n
389
GLU
390
A
VAL
391
n
390
VAL
391
A
ILE
392
n
391
ILE
392
A
GLY
393
n
392
GLY
393
A
SER
394
n
393
SER
394
A
ALA
395
n
394
ALA
395
A
LEU
396
n
395
LEU
396
A
PRO
397
n
396
PRO
397
A
ALA
398
n
397
ALA
398
A
SER
399
n
398
SER
399
A
PRO
400
n
399
PRO
400
A
GLY
401
n
400
GLY
401
A
ALA
402
n
401
ALA
402
A
ALA
403
n
402
ALA
403
A
ALA
404
n
403
ALA
404
A
GLY
405
n
404
GLY
405
A
LYS
406
n
405
LYS
406
A
VAL
407
n
406
VAL
407
A
TYR
408
n
407
TYR
408
A
PHE
409
n
408
PHE
409
A
THR
410
n
409
THR
410
A
ALA
411
n
410
ALA
411
A
ASP
412
n
411
ASP
412
A
GLU
413
n
412
GLU
413
A
ALA
414
n
413
ALA
414
A
LYS
415
n
414
LYS
415
A
ALA
416
n
415
ALA
416
A
ALA
417
n
416
ALA
417
A
HIS
418
n
417
HIS
418
A
GLU
419
n
418
GLU
419
A
LYS
420
n
419
LYS
420
A
GLY
421
n
420
GLY
421
A
GLU
422
n
421
GLU
422
A
ARG
423
n
422
ARG
423
A
VAL
424
n
423
VAL
424
A
ILE
425
n
424
ILE
425
A
LEU
426
n
425
LEU
426
A
VAL
427
n
426
VAL
427
A
ARG
428
n
427
ARG
428
A
LEU
429
n
428
LEU
429
A
GLU
430
n
429
GLU
430
A
THR
431
n
430
THR
431
A
SER
432
n
431
SER
432
A
PRO
433
n
432
PRO
433
A
GLU
434
n
433
GLU
434
A
ASP
435
n
434
ASP
435
A
ILE
436
n
435
ILE
436
A
GLU
437
n
436
GLU
437
A
GLY
438
n
437
GLY
438
A
MET
439
n
438
MET
439
A
HIS
440
n
439
HIS
440
A
ALA
441
n
440
ALA
441
A
ALA
442
n
441
ALA
442
A
GLU
443
n
442
GLU
443
A
GLY
444
n
443
GLY
444
A
ILE
445
n
444
ILE
445
A
LEU
446
n
445
LEU
446
A
THR
447
n
446
THR
447
A
VAL
448
n
447
VAL
448
A
ARG
449
n
448
ARG
449
A
GLY
450
n
449
GLY
450
A
GLY
451
n
450
GLY
451
A
MET
452
n
451
MET
452
A
THR
453
n
452
THR
453
A
SER
454
n
453
SER
454
A
HIS
455
n
454
HIS
455
A
ALA
456
n
455
ALA
456
A
ALA
457
n
456
ALA
457
A
VAL
458
n
457
VAL
458
A
VAL
459
n
458
VAL
459
A
ALA
460
n
459
ALA
460
A
ARG
461
n
460
ARG
461
A
GLY
462
n
461
GLY
462
A
MET
463
n
462
MET
463
A
GLY
464
n
463
GLY
464
A
THR
465
n
464
THR
465
A
CYS
466
n
465
CYS
466
A
CYS
467
n
466
CYS
467
A
VAL
468
n
467
VAL
468
A
SER
469
n
468
SER
469
A
GLY
470
n
469
GLY
470
A
CYS
471
n
470
CYS
471
A
GLY
472
n
471
GLY
472
A
GLU
473
n
472
GLU
473
A
ILE
474
n
473
ILE
474
A
LYS
475
n
474
LYS
475
A
ILE
476
n
475
ILE
476
A
ASN
477
n
476
ASN
477
A
GLU
478
n
477
GLU
478
A
GLU
479
n
478
GLU
479
A
ALA
480
n
479
ALA
480
A
LYS
481
n
480
LYS
481
A
THR
482
n
481
THR
482
A
PHE
483
n
482
PHE
483
A
GLU
484
n
483
GLU
484
A
LEU
485
n
484
LEU
485
A
GLY
486
n
485
GLY
486
A
GLY
487
n
486
GLY
487
A
HIS
488
n
487
HIS
488
A
THR
489
n
488
THR
489
A
PHE
490
n
489
PHE
490
A
ALA
491
n
490
ALA
491
A
GLU
492
n
491
GLU
492
A
GLY
493
n
492
GLY
493
A
ASP
494
n
493
ASP
494
A
TYR
495
n
494
TYR
495
A
ILE
496
n
495
ILE
496
A
SER
497
n
496
SER
497
A
LEU
498
n
497
LEU
498
A
ASP
499
n
498
ASP
499
A
GLY
500
n
499
GLY
500
A
SER
501
n
500
SER
501
A
THR
502
n
501
THR
502
A
GLY
503
n
502
GLY
503
A
LYS
504
n
503
LYS
504
A
ILE
505
n
504
ILE
505
A
TYR
506
n
505
TYR
506
A
LYS
507
n
506
LYS
507
A
GLY
508
n
507
GLY
508
A
ASP
509
n
508
ASP
509
A
ILE
510
n
509
ILE
510
A
GLU
511
n
510
GLU
511
A
THR
512
n
511
THR
512
A
GLN
513
n
512
GLN
513
A
GLU
514
n
513
GLU
514
A
ALA
515
n
514
ALA
515
A
SER
516
n
515
SER
516
A
VAL
517
n
516
VAL
517
A
SER
518
n
517
SER
518
A
GLY
519
n
518
GLY
519
A
SER
520
n
519
SER
520
A
PHE
521
n
520
PHE
521
A
GLU
522
n
521
GLU
522
A
ARG
523
n
522
ARG
523
A
ILE
524
n
523
ILE
524
A
MET
525
n
524
MET
525
A
VAL
526
n
525
VAL
526
A
TRP
527
n
526
TRP
527
A
ALA
528
n
527
ALA
528
A
ASP
529
n
528
ASP
529
A
LYS
530
n
529
LYS
530
A
PHE
531
n
530
PHE
531
A
ARG
532
n
531
ARG
532
A
THR
533
n
532
THR
533
A
LEU
534
n
533
LEU
534
A
LYS
535
n
534
LYS
535
A
VAL
536
n
535
VAL
536
A
ARG
537
n
536
ARG
537
A
THR
538
n
537
THR
538
A
ASN
539
n
538
ASN
539
A
ALA
540
n
539
ALA
540
A
ASP
541
n
540
ASP
541
A
THR
542
n
541
THR
542
A
PRO
543
n
542
PRO
543
A
GLU
544
n
543
GLU
544
A
ASP
545
n
544
ASP
545
A
THR
546
n
545
THR
546
A
LEU
547
n
546
LEU
547
A
ASN
548
n
547
ASN
548
A
ALA
549
n
548
ALA
549
A
VAL
550
n
549
VAL
550
A
LYS
551
n
550
LYS
551
A
LEU
552
n
551
LEU
552
A
GLY
553
n
552
GLY
553
A
ALA
554
n
553
ALA
554
A
GLU
555
n
554
GLU
555
A
GLY
556
n
555
GLY
556
A
ILE
557
n
556
ILE
557
A
GLY
558
n
557
GLY
558
A
LEU
559
n
558
LEU
559
A
CYS
560
n
559
CYS
560
A
ARG
561
n
560
ARG
561
A
THR
562
n
561
THR
562
A
GLU
563
n
562
GLU
563
A
HIS
564
n
563
HIS
564
A
MET
565
n
564
MET
565
A
PHE
566
n
565
PHE
566
A
PHE
567
n
566
PHE
567
A
GLU
568
n
567
GLU
568
A
ALA
569
n
568
ALA
569
A
ASP
570
n
569
ASP
570
A
ARG
571
n
570
ARG
571
A
ILE
572
n
571
ILE
572
A
MET
573
n
572
MET
573
A
LYS
574
n
573
LYS
574
A
ILE
575
n
574
ILE
575
A
ARG
576
n
575
ARG
576
A
LYS
577
n
576
LYS
577
A
MET
578
n
577
MET
578
A
ILE
579
n
578
ILE
579
A
LEU
580
n
579
LEU
580
A
SER
581
n
580
SER
581
A
ASP
582
n
581
ASP
582
A
SER
583
n
582
SER
583
A
VAL
584
n
583
VAL
584
A
GLU
585
n
584
GLU
585
A
ALA
586
n
585
ALA
586
A
ARG
587
n
586
ARG
587
A
GLU
588
n
587
GLU
588
A
GLU
589
n
588
GLU
589
A
ALA
590
n
589
ALA
590
A
LEU
591
n
590
LEU
591
A
ASN
592
n
591
ASN
592
A
GLU
593
n
592
GLU
593
A
LEU
594
n
593
LEU
594
A
ILE
595
n
594
ILE
595
A
PRO
596
n
595
PRO
596
A
PHE
597
n
596
PHE
597
A
GLN
598
n
597
GLN
598
A
LYS
599
n
598
LYS
599
A
GLY
600
n
599
GLY
600
A
ASP
601
n
600
ASP
601
A
PHE
602
n
601
PHE
602
A
LYS
603
n
602
LYS
603
A
ALA
604
n
603
ALA
604
A
MET
605
n
604
MET
605
A
TYR
606
n
605
TYR
606
A
LYS
607
n
606
LYS
607
A
ALA
608
n
607
ALA
608
A
LEU
609
n
608
LEU
609
A
GLU
610
n
609
GLU
610
A
GLY
611
n
610
GLY
611
A
ARG
612
n
611
ARG
612
A
PRO
613
n
612
PRO
613
A
MET
614
n
613
MET
614
A
THR
615
n
614
THR
615
A
VAL
616
n
615
VAL
616
A
ARG
617
n
616
ARG
617
A
TYR
618
n
617
TYR
618
A
LEU
619
n
618
LEU
619
A
ASP
620
n
619
ASP
620
A
PRO
621
n
620
PRO
621
A
PRO
622
n
621
PRO
622
A
LEU
623
n
622
LEU
623
A
HIS
624
n
623
HIS
624
A
GLU
625
n
624
GLU
625
A
PHE
626
n
625
PHE
626
A
VAL
627
n
626
VAL
627
A
PRO
628
n
627
PRO
628
A
HIS
629
n
628
HIS
629
A
THR
630
n
629
THR
630
A
GLU
631
n
630
GLU
631
A
GLU
632
n
631
GLU
632
A
GLU
633
n
632
GLU
633
A
GLN
634
n
633
GLN
634
A
ALA
635
n
634
ALA
635
A
GLU
636
n
635
GLU
636
A
LEU
637
n
636
LEU
637
A
ALA
638
n
637
ALA
638
A
LYS
639
n
638
LYS
639
A
ASN
640
n
639
ASN
640
A
MET
641
n
640
MET
641
A
GLY
642
n
641
GLY
642
A
LEU
643
n
642
LEU
643
A
THR
644
n
643
THR
644
A
LEU
645
n
644
LEU
645
A
ALA
646
n
645
ALA
646
A
GLU
647
n
646
GLU
647
A
VAL
648
n
647
VAL
648
A
LYS
649
n
648
LYS
649
A
ALA
650
n
649
ALA
650
A
LYS
651
n
650
LYS
651
A
VAL
652
n
651
VAL
652
A
ASP
653
n
652
ASP
653
A
GLU
654
n
653
GLU
654
A
LEU
655
n
654
LEU
655
A
HIS
656
n
655
HIS
656
A
GLU
657
n
656
GLU
657
A
PHE
658
n
657
PHE
658
A
ASN
659
n
658
ASN
659
A
PRO
660
n
659
PRO
660
A
MET
661
n
660
MET
661
A
MET
662
n
661
MET
662
A
GLY
663
n
662
GLY
663
A
HIS
664
n
663
HIS
664
A
ARG
665
n
664
ARG
665
A
GLY
666
n
665
GLY
666
A
CYS
667
n
666
CYS
667
A
ARG
668
n
667
ARG
668
A
LEU
669
n
668
LEU
669
A
ALA
670
n
669
ALA
670
A
VAL
671
n
670
VAL
671
A
THR
672
n
671
THR
672
A
TYR
673
n
672
TYR
673
A
PRO
674
n
673
PRO
674
A
GLU
675
n
674
GLU
675
A
ILE
676
n
675
ILE
676
A
ALA
677
n
676
ALA
677
A
LYS
678
n
677
LYS
678
A
MET
679
n
678
MET
679
A
GLN
680
n
679
GLN
680
A
THR
681
n
680
THR
681
A
ARG
682
n
681
ARG
682
A
ALA
683
n
682
ALA
683
A
VAL
684
n
683
VAL
684
A
MET
685
n
684
MET
685
A
GLU
686
n
685
GLU
686
A
ALA
687
n
686
ALA
687
A
ALA
688
n
687
ALA
688
A
ILE
689
n
688
ILE
689
A
GLU
690
n
689
GLU
690
A
VAL
691
n
690
VAL
691
A
LYS
692
n
691
LYS
692
A
GLU
693
n
692
GLU
693
A
GLU
694
n
693
GLU
694
A
THR
695
n
694
THR
695
A
GLY
696
n
695
GLY
696
A
ILE
697
n
696
ILE
697
A
ASP
698
n
697
ASP
698
A
ILE
699
n
698
ILE
699
A
VAL
700
n
699
VAL
700
A
PRO
701
n
700
PRO
701
A
GLU
702
n
701
GLU
702
A
ILE
703
n
702
ILE
703
A
MET
704
n
703
MET
704
A
ILE
705
n
704
ILE
705
A
PRO
706
n
705
PRO
706
A
LEU
707
n
706
LEU
707
A
VAL
708
n
707
VAL
708
A
GLY
709
n
708
GLY
709
A
GLU
710
n
709
GLU
710
A
LYS
711
n
710
LYS
711
A
LYS
712
n
711
LYS
712
A
GLU
713
n
712
GLU
713
A
LEU
714
n
713
LEU
714
A
LYS
715
n
714
LYS
715
A
PHE
716
n
715
PHE
716
A
VAL
717
n
716
VAL
717
A
LYS
718
n
717
LYS
718
A
ASP
719
n
718
ASP
719
A
VAL
720
n
719
VAL
720
A
VAL
721
n
720
VAL
721
A
VAL
722
n
721
VAL
722
A
GLU
723
n
722
GLU
723
A
VAL
724
n
723
VAL
724
A
ALA
725
n
724
ALA
725
A
GLU
726
n
725
GLU
726
A
GLN
727
n
726
GLN
727
A
VAL
728
n
727
VAL
728
A
LYS
729
n
728
LYS
729
A
LYS
730
n
729
LYS
730
A
GLU
731
n
730
GLU
731
A
LYS
732
n
731
LYS
732
A
GLY
733
n
732
GLY
733
A
SER
734
n
733
SER
734
A
ASP
735
n
734
ASP
735
A
MET
736
n
735
MET
736
A
GLN
737
n
736
GLN
737
A
TYR
738
n
737
TYR
738
A
HIS
739
n
738
HIS
739
A
ILE
740
n
739
ILE
740
A
GLY
741
n
740
GLY
741
A
THR
742
n
741
THR
742
A
MET
743
n
742
MET
743
A
ILE
744
n
743
ILE
744
A
GLU
745
n
744
GLU
745
A
ILE
746
n
745
ILE
746
A
PRO
747
n
746
PRO
747
A
ARG
748
n
747
ARG
748
A
ALA
749
n
748
ALA
749
A
ALA
750
n
749
ALA
750
A
LEU
751
n
750
LEU
751
A
THR
752
n
751
THR
752
A
ALA
753
n
752
ALA
753
A
ASP
754
n
753
ASP
754
A
ALA
755
n
754
ALA
755
A
ILE
756
n
755
ILE
756
A
ALA
757
n
756
ALA
757
A
GLU
758
n
757
GLU
758
A
GLU
759
n
758
GLU
759
A
ALA
760
n
759
ALA
760
A
GLU
761
n
760
GLU
761
A
PHE
762
n
761
PHE
762
A
PHE
763
n
762
PHE
763
A
SER
764
n
763
SER
764
A
PHE
765
n
764
PHE
765
A
GLY
766
n
765
GLY
766
A
THR
767
n
766
THR
767
A
ASN
768
n
767
ASN
768
A
ASP
769
n
768
ASP
769
A
LEU
770
n
769
LEU
770
A
THR
771
n
770
THR
771
A
GLN
772
n
771
GLN
772
A
MET
773
n
772
MET
773
A
THR
774
n
773
THR
774
A
PHE
775
n
774
PHE
775
A
GLY
776
n
775
GLY
776
A
PHE
777
n
776
PHE
777
A
SER
778
n
777
SER
778
A
ARG
779
n
778
ARG
779
A
ASP
780
n
779
ASP
780
A
ASP
781
n
780
ASP
781
A
ALA
782
n
781
ALA
782
A
GLY
783
n
782
GLY
783
A
LYS
784
n
783
LYS
784
A
PHE
785
n
784
PHE
785
A
LEU
786
n
785
LEU
786
A
ASP
787
n
786
ASP
787
A
SER
788
n
787
SER
788
A
TYR
789
n
788
TYR
789
A
TYR
790
n
789
TYR
790
A
LYS
791
n
790
LYS
791
A
ALA
792
n
791
ALA
792
A
LYS
793
n
792
LYS
793
A
ILE
794
n
793
ILE
794
A
TYR
795
n
794
TYR
795
A
GLU
796
n
795
GLU
796
A
SER
797
n
796
SER
797
A
ASP
798
n
797
ASP
798
A
PRO
799
n
798
PRO
799
A
PHE
800
n
799
PHE
800
A
ALA
801
n
800
ALA
801
A
ARG
802
n
801
ARG
802
A
LEU
803
n
802
LEU
803
A
ASP
804
n
803
ASP
804
A
GLN
805
n
804
GLN
805
A
THR
806
n
805
THR
806
A
GLY
807
n
806
GLY
807
A
VAL
808
n
807
VAL
808
A
GLY
809
n
808
GLY
809
A
GLN
810
n
809
GLN
810
A
LEU
811
n
810
LEU
811
A
VAL
812
n
811
VAL
812
A
GLU
813
n
812
GLU
813
A
MET
814
n
813
MET
814
A
ALA
815
n
814
ALA
815
A
VAL
816
n
815
VAL
816
A
LYS
817
n
816
LYS
817
A
LYS
818
n
817
LYS
818
A
GLY
819
n
818
GLY
819
A
ARG
820
n
819
ARG
820
A
GLN
821
n
820
GLN
821
A
THR
822
n
821
THR
822
A
ARG
823
n
822
ARG
823
A
PRO
824
n
823
PRO
824
A
GLY
825
n
824
GLY
825
A
LEU
826
n
825
LEU
826
A
LYS
827
n
826
LYS
827
A
CYS
828
n
827
CYS
828
A
GLY
829
n
828
GLY
829
A
ILE
830
n
829
ILE
830
A
CYS
831
n
830
CYS
831
A
GLY
832
n
831
GLY
832
A
GLU
833
n
832
GLU
833
A
HIS
834
n
833
HIS
834
A
GLY
835
n
834
GLY
835
A
GLY
836
n
835
GLY
836
A
ASP
837
n
836
ASP
837
A
PRO
838
n
837
PRO
838
A
SER
839
n
838
SER
839
A
SER
840
n
839
SER
840
A
VAL
841
n
840
VAL
841
A
GLU
842
n
841
GLU
842
A
PHE
843
n
842
PHE
843
A
CYS
844
n
843
CYS
844
A
HIS
845
n
844
HIS
845
A
LYS
846
n
845
LYS
846
A
VAL
847
n
846
VAL
847
A
GLY
848
n
847
GLY
848
A
LEU
849
n
848
LEU
849
A
ASN
850
n
849
ASN
850
A
TYR
851
n
850
TYR
851
A
VAL
852
n
851
VAL
852
A
SER
853
n
852
SER
853
A
CYS
854
n
853
CYS
854
A
SER
855
n
854
SER
855
A
PRO
856
n
855
PRO
856
A
PHE
857
n
856
PHE
857
A
ARG
858
n
857
ARG
858
A
VAL
859
n
858
VAL
859
A
PRO
860
n
859
PRO
860
A
ILE
861
n
860
ILE
861
A
ALA
862
n
861
ALA
862
A
ARG
863
n
862
ARG
863
A
LEU
864
n
863
LEU
864
A
ALA
865
n
864
ALA
865
A
ALA
866
n
865
ALA
866
A
ALA
867
n
866
ALA
867
A
GLN
868
n
867
GLN
868
A
ALA
869
n
868
ALA
869
A
ALA
870
n
869
ALA
870
A
LEU
871
n
870
LEU
871
A
ASN
872
n
871
ASN
872
A
ASN
873
n
872
ASN
873
A
n
873
874
A
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PQS
2
dimeric
4310
-141
66230
A
GLU
745
A
OE1
GLU
744
1_555
A
MG
1001
B
MG
MG
1_555
A
ASP
769
A
OD2
ASP
768
1_555
97.8
A
GLU
745
A
OE1
GLU
744
1_555
A
MG
1001
B
MG
MG
1_555
A
PPR
1000
G
O2'
PPR
1_555
68.2
A
ASP
769
A
OD2
ASP
768
1_555
A
MG
1001
B
MG
MG
1_555
A
PPR
1000
G
O2'
PPR
1_555
95.4
A
GLU
745
A
OE1
GLU
744
1_555
A
MG
1001
B
MG
MG
1_555
A
PPR
1000
G
O2
PPR
1_555
89.7
A
ASP
769
A
OD2
ASP
768
1_555
A
MG
1001
B
MG
MG
1_555
A
PPR
1000
G
O2
PPR
1_555
158.6
A
PPR
1000
G
O2'
PPR
1_555
A
MG
1001
B
MG
MG
1_555
A
PPR
1000
G
O2
PPR
1_555
68.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_655
-x+1,y,-z
crystal symmetry operation
89.2100000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
6
A
N
TYR
5
A
O
THR
41
A
O
THR
40
A
N
PHE
40
A
N
PHE
39
A
O
VAL
239
A
O
VAL
238
A
O
ASN
238
A
O
ASN
237
A
N
ARG
92
A
N
ARG
91
A
N
VAL
91
A
N
VAL
90
A
O
ILE
106
A
O
ILE
105
A
O
LYS
79
A
O
LYS
78
A
N
LEU
87
A
N
LEU
86
A
O
GLN
289
A
O
GLN
288
A
N
TYR
272
A
N
TYR
271
A
O
TYR
269
A
O
TYR
268
A
N
PHE
257
A
N
PHE
256
A
N
ALA
256
A
N
ALA
255
A
O
MET
322
A
O
MET
321
A
N
GLU
327
A
N
GLU
326
A
O
LYS
330
A
O
LYS
329
A
N
THR
380
A
N
THR
379
A
O
GLN
513
A
O
GLN
512
A
N
GLY
393
A
N
GLY
392
A
O
ILE
505
A
O
ILE
504
A
O
TYR
506
A
O
TYR
505
A
N
SER
497
A
N
SER
496
A
O
LEU
498
A
O
LEU
497
A
N
ALA
403
A
N
ALA
402
A
N
LYS
406
A
N
LYS
405
A
O
ILE
425
A
O
ILE
424
A
N
LEU
426
A
N
LEU
425
A
O
LEU
446
A
O
LEU
445
A
N
ILE
445
A
N
ILE
444
A
O
VAL
468
A
O
VAL
467
A
O
CYS
467
A
O
CYS
466
A
N
SER
399
A
N
SER
398
A
N
ASN
477
A
N
ASN
476
A
O
THR
482
A
O
THR
481
A
N
PHE
483
A
N
PHE
482
A
O
PHE
490
A
O
PHE
489
A
N
ARG
537
A
N
ARG
536
A
O
VAL
852
A
O
VAL
851
A
N
ILE
557
A
N
ILE
556
A
O
THR
615
A
O
THR
614
A
N
VAL
616
A
N
VAL
615
A
O
GLU
702
A
O
GLU
701
A
N
ILE
703
A
N
ILE
702
A
O
GLY
741
A
O
GLY
740
A
N
ILE
744
A
N
ILE
743
A
O
SER
764
A
O
SER
763
A
N
PHE
765
A
N
PHE
764
A
O
GLY
829
A
O
GLY
828
1
A
SO4
1003
D
SO4
1
A
SO4
1003
D
SO4
1
A
CD
LYS
79
A
CD
LYS
78
0
Y
1
A
CE
LYS
79
A
CE
LYS
78
0
Y
1
A
NZ
LYS
79
A
NZ
LYS
78
0
Y
1
A
CB
LYS
154
A
CB
LYS
153
0
Y
1
A
CG
LYS
154
A
CG
LYS
153
0
Y
1
A
CD
LYS
154
A
CD
LYS
153
0
Y
1
A
CE
LYS
154
A
CE
LYS
153
0
Y
1
A
NZ
LYS
154
A
NZ
LYS
153
0
Y
1
A
CB
GLU
161
A
CB
GLU
160
0
Y
1
A
CG
GLU
161
A
CG
GLU
160
0
Y
1
A
CD
GLU
161
A
CD
GLU
160
0
Y
1
A
OE1
GLU
161
A
OE1
GLU
160
0
Y
1
A
OE2
GLU
161
A
OE2
GLU
160
0
Y
1
A
CB
LYS
163
A
CB
LYS
162
0
Y
1
A
CG
LYS
163
A
CG
LYS
162
0
Y
1
A
CD
LYS
163
A
CD
LYS
162
0
Y
1
A
CE
LYS
163
A
CE
LYS
162
0
Y
1
A
NZ
LYS
163
A
NZ
LYS
162
0
Y
1
A
CB
HIS
166
A
CB
HIS
165
0
Y
1
A
CG
HIS
166
A
CG
HIS
165
0
Y
1
A
ND1
HIS
166
A
ND1
HIS
165
0
Y
1
A
CD2
HIS
166
A
CD2
HIS
165
0
Y
1
A
CE1
HIS
166
A
CE1
HIS
165
0
Y
1
A
NE2
HIS
166
A
NE2
HIS
165
0
Y
1
A
CE
LYS
182
A
CE
LYS
181
0
Y
1
A
NZ
LYS
182
A
NZ
LYS
181
0
Y
1
A
CD
LYS
371
A
CD
LYS
370
0
Y
1
A
CE
LYS
371
A
CE
LYS
370
0
Y
1
A
NZ
LYS
371
A
NZ
LYS
370
0
Y
1
A
CB
LYS
387
A
CB
LYS
386
0
Y
1
A
CG
LYS
387
A
CG
LYS
386
0
Y
1
A
CD
LYS
387
A
CD
LYS
386
0
Y
1
A
CE
LYS
387
A
CE
LYS
386
0
Y
1
A
NZ
LYS
387
A
NZ
LYS
386
0
Y
1
A
CD
GLU
478
A
CD
GLU
477
0
Y
1
A
OE1
GLU
478
A
OE1
GLU
477
0
Y
1
A
OE2
GLU
478
A
OE2
GLU
477
0
Y
1
A
CG
GLU
585
A
CG
GLU
584
0
Y
1
A
CD
GLU
585
A
CD
GLU
584
0
Y
1
A
OE1
GLU
585
A
OE1
GLU
584
0
Y
1
A
OE2
GLU
585
A
OE2
GLU
584
0
Y
1
A
LYS
874
A
LYS
873
1
Y
1
A
A
OE1
OH
GLU
TYR
726
738
2.19
1
-17.35
2.50
113.10
95.75
A
A
A
N
CA
C
GLY
GLY
GLY
519
519
519
N
1
5.17
0.50
120.30
125.47
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
537
537
537
N
1
-4.85
0.50
120.30
115.45
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
537
537
537
N
1
-14.05
1.50
119.30
105.25
A
A
A
C
N
CA
ARG
PRO
PRO
612
613
613
Y
1
-3.18
0.50
120.30
117.12
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
617
617
617
N
1
A
A
CB
CG1
VAL
VAL
616
616
0.135
0.021
1.524
1.659
N
1
A
A
CB
CG2
VAL
VAL
812
812
0.149
0.021
1.524
1.673
N
1
A
LYS
3
68.15
67.71
1
A
PHE
80
-51.25
103.63
1
A
GLU
84
-98.78
-64.02
1
A
MET
145
-109.54
-141.91
1
A
GLU
146
-150.28
24.75
1
A
LYS
149
-36.22
-33.61
1
A
GLU
161
-88.34
40.24
1
A
GLU
162
-149.43
-50.16
1
A
ASP
170
-94.55
41.48
1
A
GLU
189
-63.84
32.15
1
A
ALA
190
-167.16
10.78
1
A
ALA
395
-170.78
-160.58
1
A
SER
516
-103.33
-140.10
1
A
SER
520
81.34
-27.50
1
A
LEU
559
-164.71
113.67
1
A
TYR
673
-114.38
70.90
1
A
GLU
745
-150.30
7.71
1
A
PHE
785
-156.11
-14.61
0.2690000
0.1980000
2.2
25
2584
52306
51903
96.3
RANDOM
1
Isotropic
THROUGHOUT
2
FOURIER SYNTHESIS
1DIK
Engh & Huber
2.2
25
0
6783
31
0
6752
0.018
1.9
40.8
1.73
25.0
1KC7
104444
104444
0.0
0.0
0.1140000
1
26.6
3.4
95.1
0.5200000
1.73
1.79
4.1
14814
1
3.1
81.4
refinement
CNS
0.9
data reduction
X-GEN
data scaling
X-GEN
Pyruvate Phosphate Dikinase with Bound Mg-phosphonopyruvate
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A dimer generated by a crystallographic 2-fold axis:
-1.0 0.0 0.0 89.837 0.0 1.0 0.0 0.0 0.0 0.0 -1.0 0.0
A
GLU
9
A
GLU
8
HELX_P
A
GLY
11
A
GLY
10
5
1
3
A
MET
15
A
MET
14
HELX_P
A
LEU
32
A
LEU
31
1
2
18
A
THR
43
A
THR
42
HELX_P
A
ASN
52
A
ASN
51
1
3
10
A
THR
58
A
THR
57
HELX_P
A
GLY
77
A
GLY
76
1
4
20
A
VAL
114
A
VAL
113
HELX_P
A
GLY
124
A
GLY
123
1
5
11
A
ASN
125
A
ASN
124
HELX_P
A
MET
145
A
MET
144
1
6
21
A
PRO
148
A
PRO
147
HELX_P
A
GLU
161
A
GLU
160
1
7
14
A
PHE
167
A
PHE
166
HELX_P
A
LEU
171
A
LEU
170
5
8
5
A
THR
172
A
THR
171
HELX_P
A
GLU
189
A
GLU
188
1
9
18
A
GLU
199
A
GLU
198
HELX_P
A
TRP
215
A
TRP
214
1
10
17
A
ASN
217
A
ASN
216
HELX_P
A
ASN
227
A
ASN
226
1
11
11
A
PRO
230
A
PRO
229
HELX_P
A
GLY
234
A
GLY
233
5
12
5
A
GLN
277
A
GLN
276
HELX_P
A
GLY
284
A
GLY
283
1
13
8
A
GLN
293
A
GLN
292
HELX_P
A
MET
298
A
MET
297
1
14
6
A
MET
298
A
MET
297
HELX_P
A
ARG
317
A
ARG
316
1
15
20
A
THR
342
A
THR
341
HELX_P
A
GLU
356
A
GLU
355
1
16
15
A
THR
360
A
THR
359
HELX_P
A
ILE
368
A
ILE
367
1
17
9
A
GLU
369
A
GLU
368
HELX_P
A
HIS
378
A
HIS
377
5
18
10
A
ASN
382
A
ASN
381
HELX_P
A
ALA
388
A
ALA
387
1
19
7
A
THR
410
A
THR
409
HELX_P
A
LYS
420
A
LYS
419
1
20
11
A
SER
432
A
SER
431
HELX_P
A
GLU
434
A
GLU
433
5
21
3
A
ASP
435
A
ASP
434
HELX_P
A
ALA
442
A
ALA
441
1
22
8
A
SER
454
A
SER
453
HELX_P
A
GLY
464
A
GLY
463
1
23
11
A
SER
520
A
SER
519
HELX_P
A
ARG
532
A
ARG
531
1
24
13
A
THR
542
A
THR
541
HELX_P
A
LEU
552
A
LEU
551
1
25
11
A
GLU
563
A
GLU
562
HELX_P
A
GLU
568
A
GLU
567
1
26
6
A
ARG
571
A
ARG
570
HELX_P
A
SER
581
A
SER
580
1
27
11
A
SER
583
A
SER
582
HELX_P
A
LEU
594
A
LEU
593
1
28
12
A
LEU
594
A
LEU
593
HELX_P
A
GLU
610
A
GLU
609
1
29
17
A
PRO
622
A
PRO
621
HELX_P
A
PHE
626
A
PHE
625
5
30
5
A
THR
630
A
THR
629
HELX_P
A
MET
641
A
MET
640
1
31
12
A
THR
644
A
THR
643
HELX_P
A
HIS
656
A
HIS
655
1
32
13
A
ASN
659
A
ASN
658
HELX_P
A
GLY
663
A
GLY
662
5
33
5
A
GLY
666
A
GLY
665
HELX_P
A
TYR
673
A
TYR
672
1
34
8
A
TYR
673
A
TYR
672
HELX_P
A
GLY
696
A
GLY
695
1
35
24
A
GLU
710
A
GLU
709
HELX_P
A
LYS
732
A
LYS
731
1
36
23
A
ILE
746
A
ILE
745
HELX_P
A
THR
752
A
THR
751
1
37
7
A
THR
752
A
THR
751
HELX_P
A
ALA
757
A
ALA
756
1
38
6
A
GLY
766
A
GLY
765
HELX_P
A
GLY
776
A
GLY
775
1
39
11
A
SER
778
A
SER
777
HELX_P
A
ALA
792
A
ALA
791
1
40
15
A
GLY
807
A
GLY
806
HELX_P
A
ARG
823
A
ARG
822
1
41
17
A
GLY
832
A
GLY
831
HELX_P
A
GLY
836
A
GLY
835
5
42
5
A
ASP
837
A
ASP
836
HELX_P
A
GLY
848
A
GLY
847
1
43
12
A
SER
855
A
SER
854
HELX_P
A
PHE
857
A
PHE
856
5
44
3
A
ARG
858
A
ARG
857
HELX_P
A
ASN
873
A
ASN
872
1
45
16
metalc
2.480
A
GLU
745
A
OE1
GLU
744
1_555
A
MG
1001
B
MG
MG
1_555
metalc
2.045
A
ASP
769
A
OD2
ASP
768
1_555
A
MG
1001
B
MG
MG
1_555
metalc
2.544
A
PPR
1000
G
O2'
PPR
1_555
A
MG
1001
B
MG
MG
1_555
metalc
2.256
A
PPR
1000
G
O2
PPR
1_555
A
MG
1001
B
MG
MG
1_555
TRANSFERASE
TRANSFERASE, PHOSPHOTRANSFERASE, KINASE, phosphonopyruvate inhibitor
PPDK_CLOSY
UNP
1
1
P22983
AKWVYKFEEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQITQEIQDQIFEAITWLEELNGKKFG
DTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEGFAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKE
EKGVHFDTDLTADDLKELAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVNVQT
MVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDMPDCYKQFMDLAMKLEKHFRDMQD
MEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGMITEEEAVVRIEAKSLDQLLHPTFNPAALKAGEVIGSALPASPG
AAAGKVYFTADEAKAAHEKGERVILVRLETSPEDIEGMHAAEGILTVRGGMTSHAAVVARGMGTCCVSGCGEIKINEEAK
TFELGGHTFAEGDYISLDGSTGKIYKGDIETQEASVSGSFERIMVWADKFRTLKVRTNADTPEDTLNAVKLGAEGIGLCR
TEHMFFEADRIMKIRKMILSDSVEAREEALNELIPFQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQAELAKNM
GLTLAEVKAKVDELHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKELKFVKDVV
VEVAEQVKKEKGSDMQYHIGTMIEIPRAALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKFLDSYYKAKIYESDPFA
RLDQTGVGQLVEMAVKKGRQTRPGLKCGICGEHGGDPSSVEFCHKVGLNYVSCSPFRVPIARLAAAQAALNNK
1
873
1KC7
2
874
P22983
A
1
1
873
5
2
5
2
8
3
2
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
VAL
5
A
VAL
4
A
LYS
7
A
LYS
6
A
GLY
39
A
GLY
38
A
VAL
42
A
VAL
41
A
ALA
236
A
ALA
235
A
THR
241
A
THR
240
A
VAL
89
A
VAL
88
A
GLY
94
A
GLY
93
A
THR
105
A
THR
104
A
LEU
109
A
LEU
108
A
LYS
79
A
LYS
78
A
PHE
80
A
PHE
79
A
PRO
86
A
PRO
85
A
LEU
87
A
LEU
86
A
GLN
289
A
GLN
288
A
PRO
290
A
PRO
289
A
LYS
266
A
LYS
265
A
ILE
274
A
ILE
273
A
GLY
252
A
GLY
251
A
ARG
259
A
ARG
258
A
GLN
320
A
GLN
319
A
GLU
327
A
GLU
326
A
LYS
330
A
LYS
329
A
ASN
338
A
ASN
337
A
THR
380
A
THR
379
A
PHE
381
A
PHE
380
A
THR
512
A
THR
511
A
GLN
513
A
GLN
512
A
VAL
391
A
VAL
390
A
SER
394
A
SER
393
A
LYS
504
A
LYS
503
A
LYS
507
A
LYS
506
A
TYR
495
A
TYR
494
A
ASP
499
A
ASP
498
A
ALA
402
A
ALA
401
A
TYR
408
A
TYR
407
A
VAL
424
A
VAL
423
A
ARG
428
A
ARG
427
A
GLY
444
A
GLY
443
A
THR
447
A
THR
446
A
CYS
466
A
CYS
465
A
SER
469
A
SER
468
A
LEU
396
A
LEU
395
A
SER
399
A
SER
398
A
LYS
475
A
LYS
474
A
ASN
477
A
ASN
476
A
THR
482
A
THR
481
A
LEU
485
A
LEU
484
A
HIS
488
A
HIS
487
A
ALA
491
A
ALA
490
A
LYS
535
A
LYS
534
A
THR
538
A
THR
537
A
TYR
851
A
TYR
850
A
CYS
854
A
CYS
853
A
ILE
557
A
ILE
556
A
CYS
560
A
CYS
559
A
MET
614
A
MET
613
A
ARG
617
A
ARG
616
A
GLU
702
A
GLU
701
A
ILE
705
A
ILE
704
A
HIS
739
A
HIS
738
A
ILE
744
A
ILE
743
A
PHE
762
A
PHE
761
A
PHE
765
A
PHE
764
A
LYS
827
A
LYS
826
A
ILE
830
A
ILE
829
BINDING SITE FOR RESIDUE MG A 1001
A
MG
1001
Software
3
BINDING SITE FOR RESIDUE SO4 A 1002
A
SO4
1002
Software
7
BINDING SITE FOR RESIDUE SO4 A 1003
A
SO4
1003
Software
2
BINDING SITE FOR RESIDUE SO4 A 1004
A
SO4
1004
Software
3
BINDING SITE FOR RESIDUE SO4 A 1005
A
SO4
1005
Software
3
BINDING SITE FOR RESIDUE PPR A 1000
A
PPR
1000
Software
10
A
GLU
745
A
GLU
744
3
1_555
A
ASP
769
A
ASP
768
3
1_555
A
PPR
1000
G
PPR
3
1_555
A
LYS
22
A
LYS
21
7
1_555
A
MET
99
A
MET
98
7
1_555
A
PRO
100
A
PRO
99
7
1_555
A
GLY
101
A
GLY
100
7
1_555
A
MET
102
A
MET
101
7
1_555
A
MET
103
A
MET
102
7
1_555
A
ARG
337
A
ARG
336
7
1_555
A
ARG
523
A
ARG
522
2
1_555
A
TRP
527
A
TRP
526
2
1_555
A
LYS
718
A
LYS
717
3
1_555
A
GLU
758
A
GLU
757
3
1_555
A
ARG
823
A
ARG
822
3
1_555
A
PRO
660
A
PRO
659
3
1_555
A
MET
661
A
MET
660
3
1_555
A
ARG
665
A
ARG
664
3
1_555
A
ARG
561
A
ARG
560
10
1_555
A
ARG
617
A
ARG
616
10
1_555
A
MET
743
A
MET
742
10
1_555
A
GLU
745
A
GLU
744
10
1_555
A
GLY
766
A
GLY
765
10
1_555
A
THR
767
A
THR
766
10
1_555
A
ASN
768
A
ASN
767
10
1_555
A
ASP
769
A
ASP
768
10
1_555
A
GLY
832
A
GLY
831
10
1_555
A
MG
1001
B
MG
10
1_555
3
P 1 2 1