0.022608
0.000000
0.000000
0.000000
0.022608
0.000000
0.000000
0.000000
0.020052
0.00000
0.00000
0.00000
Kacer, V.
Scaringe, S.A.
Scarsdale, J.N.
Rife, J.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
44.232
44.232
49.870
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
Tl 1
204.383
THALLIUM (I) ION
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
TL
N
115
N
O
N
116
N
P
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
O
N
123
S
C
N
124
N
O
N
125
R
C
N
126
N
O
N
127
R
C
N
128
N
N
N
129
N
C
N
130
N
O
N
131
N
N
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
Y
100
N
sing
Y
101
N
sing
Y
102
N
doub
N
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
59
423
432
10.1107/S0907444902021911
12595698
Crystal structures of r(GGUCACAGCCC)2.
2003
10.2210/pdb1kd3/pdb
pdb_00001kd3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
98
1
Osmic confocal optics
IMAGE PLATE
2000-05-31
RIGAKU RAXIS IIC
Osmic confocal optics
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
3481.146
5'-R(*GP*GP*UP*CP*AP*CP*AP*GP*CP*CP*C)-3'
2
syn
polymer
204.383
THALLIUM (I) ION
2
syn
non-polymer
18.015
water
74
nat
water
no
no
GGUCACAGCCC
GGUCACAGCCC
A,B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
1
3.25
61.9
VAPOR DIFFUSION, HANGING DROP
6.4
50 mM tris HCl (pH 6.4), 1.4 M (NH4)2SO4, 20 mM MgCl2, 18 mM spermine, neomycin B, pH 6.4, VAPOR DIFFUSION, HANGING DROP at 293K
293
tris HCl
1
(NH4)2SO4
1
MgCl2
1
spermine
1
neomycin B
1
tris HCl
2
(NH4)2SO4
2
MgCl2
2
spermine
2
-6.598
1
19
A
1
B
10
-0.623
A_G1:C10_B
1
-6.007
-0.165
-0.110
-0.158
-14.336
1
19
A
2
B
9
1.558
A_G2:C9_B
2
-13.882
-0.194
-0.198
-0.154
-10.110
28
A
3
B
8
-3.123
A_U3:G8_B
3
-3.201
2.398
0.160
-0.711
-8.398
6
A
4
B
7
-8.519
A_C4:A7_B
4
6.152
6.857
0.532
-4.369
-1.558
4
25
A
5
B
6
-97.071
A_A5:C6_B
5
-6.894
-3.126
0.031
-0.078
2.775
4
25
A
6
B
5
-97.676
A_C6:A5_B
6
-7.302
3.008
0.079
-0.017
10.007
6
A
7
B
4
-8.696
A_A7:C4_B
7
6.490
-6.847
0.591
-4.404
10.663
28
A
8
B
3
-3.288
A_G8:U3_B
8
-3.013
-2.408
0.106
-0.690
12.743
1
19
A
9
B
2
1.657
A_C9:G2_B
9
-13.160
0.307
-0.132
-0.144
6.729
1
19
A
10
B
1
2.058
A_C10:G1_B
10
-6.095
0.268
-0.051
-0.115
2.992
32.615
A
A
1
2
10.881
B
B
10
9
3.440
6.071
-0.036
-2.090
AA_G1G2:C9C10_BB
1
2.459
-4.407
31.968
-4.769
0.488
3.108
42.250
A
A
2
3
2.806
B
B
9
8
3.174
2.022
0.005
-1.373
AA_G2U3:G8C9_BB
2
-0.062
0.086
42.203
-2.103
-0.014
3.151
58.878
A
A
3
4
6.066
B
B
8
7
3.256
5.944
0.355
-1.197
AA_U3C4:A7G8_BB
3
6.666
-6.803
58.257
-1.519
-0.023
4.119
-14.270
A
A
4
5
6.674
B
B
7
6
2.847
-1.631
-5.369
-0.991
AA_C4A5:C6A7_BB
4
4.062
16.617
-13.585
5.625
-17.545
3.440
67.512
A
A
5
6
-5.051
B
B
6
5
3.165
-5.608
-0.039
-3.866
AA_A5C6:A5C6_BB
5
-0.538
0.485
67.304
-3.261
0.014
3.907
-13.601
A
A
6
7
12.040
B
B
5
4
2.781
-2.792
5.399
-1.029
AA_C6A7:C4A5_BB
6
-3.816
-16.455
-12.756
7.322
18.725
3.197
59.180
A
A
7
8
6.719
B
B
4
3
3.317
6.613
-0.352
-1.190
AA_A7G8:U3C4_BB
7
-6.263
6.362
58.538
-1.542
0.037
3.174
42.639
A
A
8
9
2.513
B
B
3
2
3.233
1.827
0.007
-1.373
AA_G8C9:G2U3_BB
8
-0.729
1.003
42.596
-2.068
-0.081
2.996
32.385
A
A
9
10
9.642
B
B
2
1
3.383
5.351
0.040
-2.074
AA_C9C10:G1G2_BB
9
-2.073
3.736
31.886
-4.645
-0.430
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2003-03-04
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
NDB
Y
RCSB
2001-11-12
REL
REL
TL
THALLIUM (I) ION
HOH
water
TL
502
2
TL
TL
502
A
TL
501
2
TL
TL
501
B
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
23
3
HOH
HOH
23
A
HOH
26
3
HOH
HOH
26
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
36
3
HOH
HOH
36
A
HOH
37
3
HOH
HOH
37
A
HOH
41
3
HOH
HOH
41
A
HOH
47
3
HOH
HOH
47
A
HOH
48
3
HOH
HOH
48
A
HOH
49
3
HOH
HOH
49
A
HOH
56
3
HOH
HOH
56
A
HOH
64
3
HOH
HOH
64
A
HOH
66
3
HOH
HOH
66
A
HOH
67
3
HOH
HOH
67
A
HOH
69
3
HOH
HOH
69
A
HOH
73
3
HOH
HOH
73
A
HOH
78
3
HOH
HOH
78
A
HOH
80
3
HOH
HOH
80
A
HOH
82
3
HOH
HOH
82
A
HOH
83
3
HOH
HOH
83
A
HOH
85
3
HOH
HOH
85
A
HOH
86
3
HOH
HOH
86
A
HOH
115
3
HOH
HOH
115
A
HOH
121
3
HOH
HOH
121
A
HOH
131
3
HOH
HOH
131
A
HOH
169
3
HOH
HOH
169
A
HOH
173
3
HOH
HOH
173
A
HOH
218
3
HOH
HOH
218
A
HOH
310
3
HOH
HOH
310
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
412
3
HOH
HOH
412
A
HOH
14
3
HOH
HOH
14
B
HOH
16
3
HOH
HOH
16
B
HOH
17
3
HOH
HOH
17
B
HOH
20
3
HOH
HOH
20
B
HOH
22
3
HOH
HOH
22
B
HOH
25
3
HOH
HOH
25
B
HOH
30
3
HOH
HOH
30
B
HOH
34
3
HOH
HOH
34
B
HOH
35
3
HOH
HOH
35
B
HOH
38
3
HOH
HOH
38
B
HOH
39
3
HOH
HOH
39
B
HOH
40
3
HOH
HOH
40
B
HOH
42
3
HOH
HOH
42
B
HOH
45
3
HOH
HOH
45
B
HOH
55
3
HOH
HOH
55
B
HOH
57
3
HOH
HOH
57
B
HOH
58
3
HOH
HOH
58
B
HOH
59
3
HOH
HOH
59
B
HOH
60
3
HOH
HOH
60
B
HOH
61
3
HOH
HOH
61
B
HOH
68
3
HOH
HOH
68
B
HOH
70
3
HOH
HOH
70
B
HOH
72
3
HOH
HOH
72
B
HOH
74
3
HOH
HOH
74
B
HOH
77
3
HOH
HOH
77
B
HOH
79
3
HOH
HOH
79
B
HOH
87
3
HOH
HOH
87
B
HOH
112
3
HOH
HOH
112
B
HOH
124
3
HOH
HOH
124
B
HOH
142
3
HOH
HOH
142
B
HOH
157
3
HOH
HOH
157
B
HOH
161
3
HOH
HOH
161
B
HOH
172
3
HOH
HOH
172
B
HOH
215
3
HOH
HOH
215
B
HOH
311
3
HOH
HOH
311
B
HOH
314
3
HOH
HOH
314
B
HOH
315
3
HOH
HOH
315
B
HOH
316
3
HOH
HOH
316
B
HOH
319
3
HOH
HOH
319
B
HOH
411
3
HOH
HOH
411
B
G
1
n
1
G
1
A
G
2
n
2
G
2
A
U
3
n
3
U
3
A
C
4
n
4
C
4
A
A
5
n
5
A
5
A
C
6
n
6
C
6
A
A
7
n
7
A
7
A
G
8
n
8
G
8
A
C
9
n
9
C
9
A
C
10
n
10
C
10
A
C
11
n
11
C
11
A
G
1
n
1
G
1
B
G
2
n
2
G
2
B
U
3
n
3
U
3
B
C
4
n
4
C
4
B
A
5
n
5
A
5
B
C
6
n
6
C
6
B
A
7
n
7
A
7
B
G
8
n
8
G
8
B
C
9
n
9
C
9
B
C
10
n
10
C
10
B
C
11
n
11
C
11
B
author_defined_assembly
2
dimeric
A
C
4
A
O2
C
4
1_555
A
TL
502
C
TL
TL
1_555
A
C
4
A
N3
C
4
1_555
43.5
A
C
4
A
O2
C
4
1_555
A
TL
502
C
TL
TL
1_555
B
A
7
B
N7
A
7
1_555
95.8
A
C
4
A
N3
C
4
1_555
A
TL
502
C
TL
TL
1_555
B
A
7
B
N7
A
7
1_555
137.9
A
C
4
A
O2
C
4
1_555
A
TL
502
C
TL
TL
1_555
B
G
8
B
O6
G
8
1_555
80.3
A
C
4
A
N3
C
4
1_555
A
TL
502
C
TL
TL
1_555
B
G
8
B
O6
G
8
1_555
94.1
B
A
7
B
N7
A
7
1_555
A
TL
502
C
TL
TL
1_555
B
G
8
B
O6
G
8
1_555
87.0
A
C
4
A
O2
C
4
1_555
A
TL
502
C
TL
TL
1_555
B
HOH
20
F
O
HOH
1_555
138.2
A
C
4
A
N3
C
4
1_555
A
TL
502
C
TL
TL
1_555
B
HOH
20
F
O
HOH
1_555
102.3
B
A
7
B
N7
A
7
1_555
A
TL
502
C
TL
TL
1_555
B
HOH
20
F
O
HOH
1_555
106.6
B
G
8
B
O6
G
8
1_555
A
TL
502
C
TL
TL
1_555
B
HOH
20
F
O
HOH
1_555
134.5
A
A
7
A
N7
A
7
1_555
B
TL
501
D
TL
TL
1_555
A
G
8
A
O6
G
8
1_555
85.2
A
A
7
A
N7
A
7
1_555
B
TL
501
D
TL
TL
1_555
A
HOH
19
E
O
HOH
1_555
107.1
A
G
8
A
O6
G
8
1_555
B
TL
501
D
TL
TL
1_555
A
HOH
19
E
O
HOH
1_555
133.4
A
A
7
A
N7
A
7
1_555
B
TL
501
D
TL
TL
1_555
B
C
4
B
O2
C
4
1_555
93.0
A
G
8
A
O6
G
8
1_555
B
TL
501
D
TL
TL
1_555
B
C
4
B
O2
C
4
1_555
80.5
A
HOH
19
E
O
HOH
1_555
B
TL
501
D
TL
TL
1_555
B
C
4
B
O2
C
4
1_555
140.7
A
A
7
A
N7
A
7
1_555
B
TL
501
D
TL
TL
1_555
B
C
4
B
N3
C
4
1_555
135.5
A
G
8
A
O6
G
8
1_555
B
TL
501
D
TL
TL
1_555
B
C
4
B
N3
C
4
1_555
94.5
A
HOH
19
E
O
HOH
1_555
B
TL
501
D
TL
TL
1_555
B
C
4
B
N3
C
4
1_555
105.0
B
C
4
B
O2
C
4
1_555
B
TL
501
D
TL
TL
1_555
B
C
4
B
N3
C
4
1_555
43.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
DNA-RNA_REP.PARAM
DNA-RNA.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
24.8
0.88
0.00
0.00
0.88
0.00
-1.76
0.241
0.008
0.215
0.215
1.80
21.72
911
8800
10.4
97.9
RANDOM
1381692.88
0.000000
1
RESTRAINED
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
metal free r(GGUCACAGCCC)2
FLAT MODEL
74.6805
0.573747
0.27
0.22
5.00
0.22
0.17
1.80
21.72
74
536
2
460
0
0.004
0.8
11.1
1.18
0.3
0.026
0.266
1.91
136
1288
6
9.6
96.0
30.2
1.80
99
1KD3
9161
9145
-3
0.102
1
28.7
9.9
99.8
0.51
1.80
1.83
3.7
447
9.3
100
data reduction
DENZO
data scaling
SCALEPACK
refinement
CNS
phasing
CNS
The Crystal Structure of r(GGUCACAGCCC)2, Thallium form
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
metalc
2.558
A
C
4
A
O2
C
4
1_555
A
TL
502
C
TL
TL
1_555
metalc
3.273
A
C
4
A
N3
C
4
1_555
A
TL
502
C
TL
TL
1_555
metalc
2.972
A
A
7
A
N7
A
7
1_555
B
TL
501
D
TL
TL
1_555
metalc
3.215
A
G
8
A
O6
G
8
1_555
B
TL
501
D
TL
TL
1_555
metalc
2.991
A
HOH
19
E
O
HOH
1_555
B
TL
501
D
TL
TL
1_555
metalc
2.929
A
TL
502
C
TL
TL
1_555
B
A
7
B
N7
A
7
1_555
metalc
3.199
A
TL
502
C
TL
TL
1_555
B
G
8
B
O6
G
8
1_555
metalc
3.050
A
TL
502
C
TL
TL
1_555
B
HOH
20
F
O
HOH
1_555
metalc
2.607
B
C
4
B
O2
C
4
1_555
B
TL
501
D
TL
TL
1_555
metalc
3.261
B
C
4
B
N3
C
4
1_555
B
TL
501
D
TL
TL
1_555
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
B
C
10
B
N3
C
10
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
B
C
10
B
O2
C
10
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
B
C
10
B
N4
C
10
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
B
C
9
B
N3
C
9
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
B
C
9
B
O2
C
9
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
B
C
9
B
N4
C
9
1_555
hydrog
TYPE_28_PAIR
A
U
3
A
N3
U
3
1_555
B
G
8
B
O6
G
8
1_555
hydrog
TYPE_28_PAIR
A
U
3
A
O2
U
3
1_555
B
G
8
B
N1
G
8
1_555
hydrog
C-A MISPAIR
A
C
4
A
O2
C
4
1_555
B
A
7
B
N6
A
7
1_555
hydrog
TYPE_25_PAIR
A
A
5
A
N6
A
5
1_555
B
C
6
B
N3
C
6
1_555
hydrog
TYPE_25_PAIR
A
A
5
A
N7
A
5
1_555
B
C
6
B
N4
C
6
1_555
hydrog
TYPE_25_PAIR
A
C
6
A
N3
C
6
1_555
B
A
5
B
N6
A
5
1_555
hydrog
TYPE_25_PAIR
A
C
6
A
N4
C
6
1_555
B
A
5
B
N7
A
5
1_555
hydrog
A-C MISPAIR
A
A
7
A
N6
A
7
1_555
B
C
4
B
O2
C
4
1_555
hydrog
TYPE_28_PAIR
A
G
8
A
N1
G
8
1_555
B
U
3
B
O2
U
3
1_555
hydrog
TYPE_28_PAIR
A
G
8
A
O6
G
8
1_555
B
U
3
B
N3
U
3
1_555
hydrog
WATSON-CRICK
A
C
9
A
N3
C
9
1_555
B
G
2
B
N1
G
2
1_555
hydrog
WATSON-CRICK
A
C
9
A
N4
C
9
1_555
B
G
2
B
O6
G
2
1_555
hydrog
WATSON-CRICK
A
C
9
A
O2
C
9
1_555
B
G
2
B
N2
G
2
1_555
hydrog
WATSON-CRICK
A
C
10
A
N3
C
10
1_555
B
G
1
B
N1
G
1
1_555
hydrog
WATSON-CRICK
A
C
10
A
N4
C
10
1_555
B
G
1
B
O6
G
1
1_555
hydrog
WATSON-CRICK
A
C
10
A
O2
C
10
1_555
B
G
1
B
N2
G
1
1_555
RNA
RNA duplex, metal binding, RNA
1KD3
PDB
1
1KD3
1
11
1KD3
1
11
1KD3
A
1
1
11
1
11
1KD3
1
11
1KD3
B
1
1
11
BINDING SITE FOR RESIDUE TL B 501
B
TL
501
Software
5
BINDING SITE FOR RESIDUE TL A 502
A
TL
502
Software
5
A
A
7
A
A
7
5
1_555
A
G
8
A
G
8
5
1_555
A
HOH
19
E
HOH
5
1_555
B
U
3
B
U
3
5
1_555
B
C
4
B
C
4
5
1_555
A
U
3
A
U
3
5
1_555
A
C
4
A
C
4
5
1_555
B
A
7
B
A
7
5
1_555
B
G
8
B
G
8
5
1_555
B
HOH
20
F
HOH
5
1_555
78
tetragonal
P 43