0.021368
0.000000
0.000000
0.000000
0.011765
0.000000
0.000000
0.000000
0.008977
0.00000
0.00000
0.00000
Delarue, M.
Boule, J.B.
Lescar, J.
Expert-Bezancon, N.
Jourdan, N.
Sukumar, N.
Rougeon, F.
Papanicolaou, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
46.800
85.000
111.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H12 Br N2 O8 P
387.078
n
5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
N
C
N
76
N
N
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
O
N
81
N
O
N
82
N
BR
N
83
R
C
N
84
N
C
N
85
S
C
N
86
R
C
N
87
N
O
N
88
N
O
N
89
N
C
N
90
N
O
N
91
N
P
N
92
N
O
N
93
N
O
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
R
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
S
N
113
N
O
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
O
N
129
N
N
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
Y
175
N
C
Y
176
N
N
Y
177
N
C
Y
178
N
C
Y
179
N
N
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
S
C
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
N
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
S
N
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
MG
N
284
N
NA
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
O
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
R
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
N
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
N
394
N
O
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
N
412
N
C
N
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
Y
174
N
sing
Y
175
N
doub
Y
176
N
doub
N
177
N
sing
Y
178
N
sing
N
179
N
sing
Y
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
Y
282
N
doub
Y
283
N
sing
Y
284
N
sing
N
285
N
sing
Y
286
N
doub
N
287
N
sing
Y
288
N
doub
N
289
N
sing
Y
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
doub
Y
356
N
sing
Y
357
N
sing
N
358
N
sing
Y
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
Y
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
21
427
439
10.1093/emboj/21.3.427
11823435
Crystal structures of a template-independent DNA polymerase: murine terminal deoxynucleotidyltransferase.
2002
10.2210/pdb1kdh/pdb
pdb_00001kdh
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1999-09-23
ADSC QUANTUM 4
DIAMOND
SINGLE WAVELENGTH
M
x-ray
1
0.960
1.0
ID14-4
ESRF
0.960
SYNCHROTRON
ESRF BEAMLINE ID14-4
1431.294
5'-D(P*(BRU)P*(BRU)P*(BRU)P*(BRU))-3'
1
syn
polymer
41915.836
Terminal deoxynucleotidyltransferase short isoform
2.7.7.31
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
1
nat
water
no
yes
(BRU)(BRU)(BRU)(BRU)
UUUU
D
polydeoxyribonucleotide
no
no
KKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEG
IIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPE
AEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEK
FKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLRRYATHE
RKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA
KKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEG
IIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPE
AEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEK
FKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLRRYATHE
RKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
10090
Mus musculus
562
Escherichia coli
1
2.57
52.14
VAPOR DIFFUSION, HANGING DROP
6.0
PEG 6K, 1M LiCl, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
PEG 6K
1
LiCl
1
pdbx_struct_conn_angle
struct_conn
struct_conn_type
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Data collection
Database references
Derived calculations
Refinement description
1
0
2002-05-13
1
1
2008-04-27
1
2
2011-07-13
1
3
2019-11-20
1
4
2023-08-16
_struct_conn_type.id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Unliganded murine terminal deoxynucleotidyl transferase
Ternary complex of human polymerase beta
TdT complexed with ddATP
RCSB
Y
RCSB
2001-11-13
REL
REL
MG
MAGNESIUM ION
NA
SODIUM ION
HOH
water
1JMS
pdb entry 1jms
PDB
experimental model
MG
1
3
MG
MG
1
A
NA
2
4
NA
NA
2
A
HOH
3
5
HOH
HOH
3
A
+U
1
n
1
BRU
1
D
+U
2
n
2
BRU
2
D
+U
3
n
3
BRU
3
D
+U
4
n
4
BRU
4
D
LYS
148
n
1
LYS
148
A
LYS
149
n
2
LYS
149
A
ILE
150
n
3
ILE
150
A
SER
151
n
4
SER
151
A
GLN
152
n
5
GLN
152
A
TYR
153
n
6
TYR
153
A
ALA
154
n
7
ALA
154
A
CYS
155
n
8
CYS
155
A
GLN
156
n
9
GLN
156
A
ARG
157
n
10
ARG
157
A
ARG
158
n
11
ARG
158
A
THR
159
n
12
THR
159
A
THR
160
n
13
THR
160
A
LEU
161
n
14
LEU
161
A
ASN
162
n
15
ASN
162
A
ASN
163
n
16
ASN
163
A
TYR
164
n
17
TYR
164
A
ASN
165
n
18
ASN
165
A
GLN
166
n
19
GLN
166
A
LEU
167
n
20
LEU
167
A
PHE
168
n
21
PHE
168
A
THR
169
n
22
THR
169
A
ASP
170
n
23
ASP
170
A
ALA
171
n
24
ALA
171
A
LEU
172
n
25
LEU
172
A
ASP
173
n
26
ASP
173
A
ILE
174
n
27
ILE
174
A
LEU
175
n
28
LEU
175
A
ALA
176
n
29
ALA
176
A
GLU
177
n
30
GLU
177
A
ASN
178
n
31
ASN
178
A
ASP
179
n
32
ASP
179
A
GLU
180
n
33
GLU
180
A
LEU
181
n
34
LEU
181
A
ARG
182
n
35
ARG
182
A
GLU
183
n
36
GLU
183
A
ASN
184
n
37
ASN
184
A
GLU
185
n
38
GLU
185
A
GLY
186
n
39
GLY
186
A
SER
187
n
40
SER
187
A
CYS
188
n
41
CYS
188
A
LEU
189
n
42
LEU
189
A
ALA
190
n
43
ALA
190
A
PHE
191
n
44
PHE
191
A
MET
192
n
45
MET
192
A
ARG
193
n
46
ARG
193
A
ALA
194
n
47
ALA
194
A
SER
195
n
48
SER
195
A
SER
196
n
49
SER
196
A
VAL
197
n
50
VAL
197
A
LEU
198
n
51
LEU
198
A
LYS
199
n
52
LYS
199
A
SER
200
n
53
SER
200
A
LEU
201
n
54
LEU
201
A
PRO
202
n
55
PRO
202
A
PHE
203
n
56
PHE
203
A
PRO
204
n
57
PRO
204
A
ILE
205
n
58
ILE
205
A
THR
206
n
59
THR
206
A
SER
207
n
60
SER
207
A
MET
208
n
61
MET
208
A
LYS
209
n
62
LYS
209
A
ASP
210
n
63
ASP
210
A
THR
211
n
64
THR
211
A
GLU
212
n
65
GLU
212
A
GLY
213
n
66
GLY
213
A
ILE
214
n
67
ILE
214
A
PRO
215
n
68
PRO
215
A
CYS
216
n
69
CYS
216
A
LEU
217
n
70
LEU
217
A
GLY
218
n
71
GLY
218
A
ASP
219
n
72
ASP
219
A
LYS
220
n
73
LYS
220
A
VAL
221
n
74
VAL
221
A
LYS
222
n
75
LYS
222
A
SER
223
n
76
SER
223
A
ILE
224
n
77
ILE
224
A
ILE
225
n
78
ILE
225
A
GLU
226
n
79
GLU
226
A
GLY
227
n
80
GLY
227
A
ILE
228
n
81
ILE
228
A
ILE
229
n
82
ILE
229
A
GLU
230
n
83
GLU
230
A
ASP
231
n
84
ASP
231
A
GLY
232
n
85
GLY
232
A
GLU
233
n
86
GLU
233
A
SER
234
n
87
SER
234
A
SER
235
n
88
SER
235
A
GLU
236
n
89
GLU
236
A
ALA
237
n
90
ALA
237
A
LYS
238
n
91
LYS
238
A
ALA
239
n
92
ALA
239
A
VAL
240
n
93
VAL
240
A
LEU
241
n
94
LEU
241
A
ASN
242
n
95
ASN
242
A
ASP
243
n
96
ASP
243
A
GLU
244
n
97
GLU
244
A
ARG
245
n
98
ARG
245
A
TYR
246
n
99
TYR
246
A
LYS
247
n
100
LYS
247
A
SER
248
n
101
SER
248
A
PHE
249
n
102
PHE
249
A
LYS
250
n
103
LYS
250
A
LEU
251
n
104
LEU
251
A
PHE
252
n
105
PHE
252
A
THR
253
n
106
THR
253
A
SER
254
n
107
SER
254
A
VAL
255
n
108
VAL
255
A
PHE
256
n
109
PHE
256
A
GLY
257
n
110
GLY
257
A
VAL
258
n
111
VAL
258
A
GLY
259
n
112
GLY
259
A
LEU
260
n
113
LEU
260
A
LYS
261
n
114
LYS
261
A
THR
262
n
115
THR
262
A
ALA
263
n
116
ALA
263
A
GLU
264
n
117
GLU
264
A
LYS
265
n
118
LYS
265
A
TRP
266
n
119
TRP
266
A
PHE
267
n
120
PHE
267
A
ARG
268
n
121
ARG
268
A
MET
269
n
122
MET
269
A
GLY
270
n
123
GLY
270
A
PHE
271
n
124
PHE
271
A
ARG
272
n
125
ARG
272
A
THR
273
n
126
THR
273
A
LEU
274
n
127
LEU
274
A
SER
275
n
128
SER
275
A
LYS
276
n
129
LYS
276
A
ILE
277
n
130
ILE
277
A
GLN
278
n
131
GLN
278
A
SER
279
n
132
SER
279
A
ASP
280
n
133
ASP
280
A
LYS
281
n
134
LYS
281
A
SER
282
n
135
SER
282
A
LEU
283
n
136
LEU
283
A
ARG
284
n
137
ARG
284
A
PHE
285
n
138
PHE
285
A
THR
286
n
139
THR
286
A
GLN
287
n
140
GLN
287
A
MET
288
n
141
MET
288
A
GLN
289
n
142
GLN
289
A
LYS
290
n
143
LYS
290
A
ALA
291
n
144
ALA
291
A
GLY
292
n
145
GLY
292
A
PHE
293
n
146
PHE
293
A
LEU
294
n
147
LEU
294
A
TYR
295
n
148
TYR
295
A
TYR
296
n
149
TYR
296
A
GLU
297
n
150
GLU
297
A
ASP
298
n
151
ASP
298
A
LEU
299
n
152
LEU
299
A
VAL
300
n
153
VAL
300
A
SER
301
n
154
SER
301
A
CYS
302
n
155
CYS
302
A
VAL
303
n
156
VAL
303
A
ASN
304
n
157
ASN
304
A
ARG
305
n
158
ARG
305
A
PRO
306
n
159
PRO
306
A
GLU
307
n
160
GLU
307
A
ALA
308
n
161
ALA
308
A
GLU
309
n
162
GLU
309
A
ALA
310
n
163
ALA
310
A
VAL
311
n
164
VAL
311
A
SER
312
n
165
SER
312
A
MET
313
n
166
MET
313
A
LEU
314
n
167
LEU
314
A
VAL
315
n
168
VAL
315
A
LYS
316
n
169
LYS
316
A
GLU
317
n
170
GLU
317
A
ALA
318
n
171
ALA
318
A
VAL
319
n
172
VAL
319
A
VAL
320
n
173
VAL
320
A
THR
321
n
174
THR
321
A
PHE
322
n
175
PHE
322
A
LEU
323
n
176
LEU
323
A
PRO
324
n
177
PRO
324
A
ASP
325
n
178
ASP
325
A
ALA
326
n
179
ALA
326
A
LEU
327
n
180
LEU
327
A
VAL
328
n
181
VAL
328
A
THR
329
n
182
THR
329
A
MET
330
n
183
MET
330
A
THR
331
n
184
THR
331
A
GLY
332
n
185
GLY
332
A
GLY
333
n
186
GLY
333
A
PHE
334
n
187
PHE
334
A
ARG
335
n
188
ARG
335
A
ARG
336
n
189
ARG
336
A
GLY
337
n
190
GLY
337
A
LYS
338
n
191
LYS
338
A
MET
339
n
192
MET
339
A
THR
340
n
193
THR
340
A
GLY
341
n
194
GLY
341
A
HIS
342
n
195
HIS
342
A
ASP
343
n
196
ASP
343
A
VAL
344
n
197
VAL
344
A
ASP
345
n
198
ASP
345
A
PHE
346
n
199
PHE
346
A
LEU
347
n
200
LEU
347
A
ILE
348
n
201
ILE
348
A
THR
349
n
202
THR
349
A
SER
350
n
203
SER
350
A
PRO
351
n
204
PRO
351
A
GLU
352
n
205
GLU
352
A
ALA
353
n
206
ALA
353
A
THR
354
n
207
THR
354
A
GLU
355
n
208
GLU
355
A
ASP
356
n
209
ASP
356
A
GLU
357
n
210
GLU
357
A
GLU
358
n
211
GLU
358
A
GLN
359
n
212
GLN
359
A
GLN
360
n
213
GLN
360
A
LEU
361
n
214
LEU
361
A
LEU
362
n
215
LEU
362
A
HIS
363
n
216
HIS
363
A
LYS
364
n
217
LYS
364
A
VAL
365
n
218
VAL
365
A
THR
366
n
219
THR
366
A
ASP
367
n
220
ASP
367
A
PHE
368
n
221
PHE
368
A
TRP
369
n
222
TRP
369
A
LYS
370
n
223
LYS
370
A
GLN
371
n
224
GLN
371
A
GLN
372
n
225
GLN
372
A
GLY
373
n
226
GLY
373
A
LEU
374
n
227
LEU
374
A
LEU
375
n
228
LEU
375
A
LEU
376
n
229
LEU
376
A
TYR
377
n
230
TYR
377
A
CYS
378
n
231
CYS
378
A
ASP
379
n
232
ASP
379
A
ILE
380
n
233
ILE
380
A
LEU
381
n
234
LEU
381
A
GLU
382
n
235
GLU
382
A
SER
383
n
236
SER
383
A
THR
384
n
237
THR
384
A
PHE
385
n
238
PHE
385
A
GLU
386
n
239
GLU
386
A
LYS
387
n
240
LYS
387
A
PHE
388
n
241
PHE
388
A
LYS
389
n
242
LYS
389
A
GLN
390
n
243
GLN
390
A
PRO
391
n
244
PRO
391
A
SER
392
n
245
SER
392
A
ARG
393
n
246
ARG
393
A
n
247
394
A
n
248
395
A
n
249
396
A
n
250
397
A
LEU
398
n
251
LEU
398
A
ASP
399
n
252
ASP
399
A
HIS
400
n
253
HIS
400
A
PHE
401
n
254
PHE
401
A
GLN
402
n
255
GLN
402
A
LYS
403
n
256
LYS
403
A
CYS
404
n
257
CYS
404
A
PHE
405
n
258
PHE
405
A
LEU
406
n
259
LEU
406
A
ILE
407
n
260
ILE
407
A
LEU
408
n
261
LEU
408
A
LYS
409
n
262
LYS
409
A
LEU
410
n
263
LEU
410
A
ASP
411
n
264
ASP
411
A
HIS
412
n
265
HIS
412
A
GLY
413
n
266
GLY
413
A
ARG
414
n
267
ARG
414
A
VAL
415
n
268
VAL
415
A
HIS
416
n
269
HIS
416
A
SER
417
n
270
SER
417
A
GLU
418
n
271
GLU
418
A
LYS
419
n
272
LYS
419
A
SER
420
n
273
SER
420
A
n
274
421
A
n
275
422
A
n
276
423
A
GLU
424
n
277
GLU
424
A
GLY
425
n
278
GLY
425
A
LYS
426
n
279
LYS
426
A
GLY
427
n
280
GLY
427
A
TRP
428
n
281
TRP
428
A
LYS
429
n
282
LYS
429
A
ALA
430
n
283
ALA
430
A
ILE
431
n
284
ILE
431
A
ARG
432
n
285
ARG
432
A
VAL
433
n
286
VAL
433
A
ASP
434
n
287
ASP
434
A
LEU
435
n
288
LEU
435
A
VAL
436
n
289
VAL
436
A
MET
437
n
290
MET
437
A
CYS
438
n
291
CYS
438
A
PRO
439
n
292
PRO
439
A
TYR
440
n
293
TYR
440
A
ASP
441
n
294
ASP
441
A
ARG
442
n
295
ARG
442
A
ARG
443
n
296
ARG
443
A
ALA
444
n
297
ALA
444
A
PHE
445
n
298
PHE
445
A
ALA
446
n
299
ALA
446
A
LEU
447
n
300
LEU
447
A
LEU
448
n
301
LEU
448
A
GLY
449
n
302
GLY
449
A
TRP
450
n
303
TRP
450
A
THR
451
n
304
THR
451
A
GLY
452
n
305
GLY
452
A
SER
453
n
306
SER
453
A
ARG
454
n
307
ARG
454
A
GLN
455
n
308
GLN
455
A
PHE
456
n
309
PHE
456
A
GLU
457
n
310
GLU
457
A
ARG
458
n
311
ARG
458
A
ASP
459
n
312
ASP
459
A
LEU
460
n
313
LEU
460
A
ARG
461
n
314
ARG
461
A
ARG
462
n
315
ARG
462
A
TYR
463
n
316
TYR
463
A
ALA
464
n
317
ALA
464
A
THR
465
n
318
THR
465
A
HIS
466
n
319
HIS
466
A
GLU
467
n
320
GLU
467
A
ARG
468
n
321
ARG
468
A
LYS
469
n
322
LYS
469
A
MET
470
n
323
MET
470
A
MET
471
n
324
MET
471
A
LEU
472
n
325
LEU
472
A
ASP
473
n
326
ASP
473
A
ASN
474
n
327
ASN
474
A
HIS
475
n
328
HIS
475
A
ALA
476
n
329
ALA
476
A
LEU
477
n
330
LEU
477
A
TYR
478
n
331
TYR
478
A
ASP
479
n
332
ASP
479
A
ARG
480
n
333
ARG
480
A
THR
481
n
334
THR
481
A
LYS
482
n
335
LYS
482
A
ARG
483
n
336
ARG
483
A
VAL
484
n
337
VAL
484
A
PHE
485
n
338
PHE
485
A
LEU
486
n
339
LEU
486
A
GLU
487
n
340
GLU
487
A
ALA
488
n
341
ALA
488
A
GLU
489
n
342
GLU
489
A
SER
490
n
343
SER
490
A
GLU
491
n
344
GLU
491
A
GLU
492
n
345
GLU
492
A
GLU
493
n
346
GLU
493
A
ILE
494
n
347
ILE
494
A
PHE
495
n
348
PHE
495
A
ALA
496
n
349
ALA
496
A
HIS
497
n
350
HIS
497
A
LEU
498
n
351
LEU
498
A
GLY
499
n
352
GLY
499
A
LEU
500
n
353
LEU
500
A
ASP
501
n
354
ASP
501
A
TYR
502
n
355
TYR
502
A
ILE
503
n
356
ILE
503
A
GLU
504
n
357
GLU
504
A
PRO
505
n
358
PRO
505
A
TRP
506
n
359
TRP
506
A
GLU
507
n
360
GLU
507
A
ARG
508
n
361
ARG
508
A
ASN
509
n
362
ASN
509
A
ALA
510
n
363
ALA
510
A
author_defined_assembly
2
dimeric
D
BRU
2
A
OP1
BRU
2
1_555
A
NA
2
D
NA
NA
1_555
A
THR
253
B
O
THR
106
1_555
151.3
D
BRU
2
A
OP1
BRU
2
1_555
A
NA
2
D
NA
NA
1_555
A
VAL
255
B
O
VAL
108
1_555
77.3
A
THR
253
B
O
THR
106
1_555
A
NA
2
D
NA
NA
1_555
A
VAL
255
B
O
VAL
108
1_555
76.4
D
BRU
2
A
OP1
BRU
2
1_555
A
NA
2
D
NA
NA
1_555
A
VAL
258
B
O
VAL
111
1_555
82.5
A
THR
253
B
O
THR
106
1_555
A
NA
2
D
NA
NA
1_555
A
VAL
258
B
O
VAL
111
1_555
86.0
A
VAL
255
B
O
VAL
108
1_555
A
NA
2
D
NA
NA
1_555
A
VAL
258
B
O
VAL
111
1_555
89.2
D
BRU
3
A
O3'
BRU
3
1_555
A
MG
1
C
MG
MG
1_555
A
ASP
434
B
OD2
ASP
287
1_555
156.0
D
BRU
1
A
BRU
1
DU
D
BRU
2
A
BRU
2
DU
D
BRU
3
A
BRU
3
DU
D
BRU
4
A
BRU
4
DU
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
327
B
N
LEU
180
A
O
THR
349
B
O
THR
202
A
N
ILE
348
B
N
ILE
201
A
O
VAL
436
B
O
VAL
289
A
O
ILE
431
B
O
ILE
284
A
N
LEU
408
B
N
LEU
261
A
O
PHE
405
B
O
PHE
258
A
N
ASP
379
B
N
ASP
232
A
N
MET
471
B
N
MET
324
A
O
TYR
478
B
O
TYR
331
A
N
LEU
477
B
N
LEU
330
A
O
LEU
486
B
O
LEU
339
1
A
CG
LYS
148
B
CG
LYS
1
1
Y
1
A
CD
LYS
148
B
CD
LYS
1
1
Y
1
A
CE
LYS
148
B
CE
LYS
1
1
Y
1
A
NZ
LYS
148
B
NZ
LYS
1
1
Y
1
A
CG
LYS
149
B
CG
LYS
2
1
Y
1
A
CD
LYS
149
B
CD
LYS
2
1
Y
1
A
CE
LYS
149
B
CE
LYS
2
1
Y
1
A
NZ
LYS
149
B
NZ
LYS
2
1
Y
1
A
CG
GLU
212
B
CG
GLU
65
1
Y
1
A
CD
GLU
212
B
CD
GLU
65
1
Y
1
A
OE1
GLU
212
B
OE1
GLU
65
1
Y
1
A
OE2
GLU
212
B
OE2
GLU
65
1
Y
1
A
CG
LYS
238
B
CG
LYS
91
1
Y
1
A
CD
LYS
238
B
CD
LYS
91
1
Y
1
A
CE
LYS
238
B
CE
LYS
91
1
Y
1
A
NZ
LYS
238
B
NZ
LYS
91
1
Y
1
A
CG
LYS
387
B
CG
LYS
240
1
Y
1
A
CD
LYS
387
B
CD
LYS
240
1
Y
1
A
CE
LYS
387
B
CE
LYS
240
1
Y
1
A
NZ
LYS
387
B
NZ
LYS
240
1
Y
1
A
CG
ARG
393
B
CG
ARG
246
1
Y
1
A
CD
ARG
393
B
CD
ARG
246
1
Y
1
A
NE
ARG
393
B
NE
ARG
246
1
Y
1
A
CZ
ARG
393
B
CZ
ARG
246
1
Y
1
A
NH1
ARG
393
B
NH1
ARG
246
1
Y
1
A
NH2
ARG
393
B
NH2
ARG
246
1
Y
1
A
CG
LEU
398
B
CG
LEU
251
1
Y
1
A
CD1
LEU
398
B
CD1
LEU
251
1
Y
1
A
CD2
LEU
398
B
CD2
LEU
251
1
Y
1
A
CG
GLU
418
B
CG
GLU
271
1
Y
1
A
CD
GLU
418
B
CD
GLU
271
1
Y
1
A
OE1
GLU
418
B
OE1
GLU
271
1
Y
1
A
OE2
GLU
418
B
OE2
GLU
271
1
Y
1
A
CG
LYS
419
B
CG
LYS
272
1
Y
1
A
CD
LYS
419
B
CD
LYS
272
1
Y
1
A
CE
LYS
419
B
CE
LYS
272
1
Y
1
A
NZ
LYS
419
B
NZ
LYS
272
1
Y
1
A
OG
SER
420
B
OG
SER
273
1
Y
1
A
CG
GLU
424
B
CG
GLU
277
1
Y
1
A
CD
GLU
424
B
CD
GLU
277
1
Y
1
A
OE1
GLU
424
B
OE1
GLU
277
1
Y
1
A
OE2
GLU
424
B
OE2
GLU
277
1
Y
1
A
CG
LYS
426
B
CG
LYS
279
1
Y
1
A
CD
LYS
426
B
CD
LYS
279
1
Y
1
A
CE
LYS
426
B
CE
LYS
279
1
Y
1
A
NZ
LYS
426
B
NZ
LYS
279
1
Y
1
A
LYS
394
B
LYS
247
1
Y
1
A
VAL
395
B
VAL
248
1
Y
1
A
ASP
396
B
ASP
249
1
Y
1
A
ALA
397
B
ALA
250
1
Y
1
A
GLY
421
B
GLY
274
1
Y
1
A
GLN
422
B
GLN
275
1
Y
1
A
GLN
423
B
GLN
276
1
Y
1
9.38
1.50
119.30
128.68
A
A
A
C
N
CA
LEU
PRO
PRO
201
202
202
Y
1
A
A
NE1
CE2
TRP
TRP
428
428
0.113
0.013
1.371
1.484
N
1
A
LYS
149
50.11
81.94
1
A
SER
151
-45.46
156.41
1
A
THR
160
-79.90
-157.75
1
A
ASN
162
-105.74
72.49
1
A
ASN
184
-114.26
74.61
1
A
GLU
212
-67.54
67.13
1
A
GLU
230
-83.65
-85.57
1
A
SER
254
-66.68
0.12
1
A
LYS
261
-49.83
-78.99
1
A
ASP
280
-43.08
107.78
1
A
SER
282
-162.87
-58.66
1
A
LEU
323
-157.02
74.50
1
A
PRO
324
-57.34
-5.61
1
A
THR
331
-109.07
-166.47
1
A
ALA
353
-36.54
130.91
1
A
GLN
359
-88.04
-74.13
1
A
ASP
399
48.04
76.72
1
A
GLN
402
-63.32
99.39
1
A
CYS
404
-166.78
104.74
1
A
THR
465
-66.78
-73.36
protein_rep.param
cis_peptide.param
water_rep.param
dna-rna.param
ion.param
4.218
12.747
-16.94
0.297
0.239
0.241
0.241
3.00
30.0
405
8579
8579
91.5
random
1
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
pdb entry 1jms
Engh & Huber
3.00
30.0
1
2930
6
77
2846
1.437
1.5
2.579
2.0
1.874
2.0
3.107
2.5
1.38
0.0084
3.00
30.0
1KDH
8579
8579
0.
0.
0.075
0.075
1
8.5
2.8
91.5
0.608
3.00
3.11
2.5
1.8
87.4
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
Binary Complex of Murine Terminal Deoxynucleotidyl Transferase with a Primer Single Stranded DNA
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
TYR
153
B
TYR
6
HELX_P
A
ARG
157
B
ARG
10
5
1
5
A
ASN
165
B
ASN
18
HELX_P
A
ARG
182
B
ARG
35
1
2
18
A
ASN
184
B
ASN
37
HELX_P
A
SER
200
B
SER
53
1
3
17
A
SER
207
B
SER
60
HELX_P
A
GLU
212
B
GLU
65
5
4
6
A
GLY
218
B
GLY
71
HELX_P
A
GLY
232
B
GLY
85
1
5
15
A
SER
234
B
SER
87
HELX_P
A
ASP
243
B
ASP
96
1
6
10
A
ASP
243
B
ASP
96
HELX_P
A
SER
254
B
SER
107
1
7
12
A
GLY
259
B
GLY
112
HELX_P
A
MET
269
B
MET
122
1
8
11
A
THR
273
B
THR
126
HELX_P
A
ASP
280
B
ASP
133
1
9
8
A
THR
286
B
THR
139
HELX_P
A
TYR
295
B
TYR
148
1
10
10
A
TYR
295
B
TYR
148
HELX_P
A
SER
301
B
SER
154
1
11
7
A
ASN
304
B
ASN
157
HELX_P
A
LEU
323
B
LEU
176
1
12
20
A
GLY
333
B
GLY
186
HELX_P
A
GLY
337
B
GLY
190
5
13
5
A
THR
354
B
THR
207
HELX_P
A
GLN
371
B
GLN
224
1
14
18
A
GLY
413
B
GLY
266
HELX_P
A
VAL
415
B
VAL
268
5
15
3
A
ARG
442
B
ARG
295
HELX_P
A
THR
451
B
THR
304
1
16
10
A
SER
453
B
SER
306
HELX_P
A
LYS
469
B
LYS
322
1
17
17
A
SER
490
B
SER
343
HELX_P
A
GLY
499
B
GLY
352
1
18
10
A
GLU
504
B
GLU
357
HELX_P
A
ARG
508
B
ARG
361
5
19
5
covale
1.605
both
D
BRU
1
A
O3'
BRU
1
1_555
D
BRU
2
A
P
BRU
2
1_555
covale
1.607
both
D
BRU
2
A
O3'
BRU
2
1_555
D
BRU
3
A
P
BRU
3
1_555
covale
1.614
both
D
BRU
3
A
O3'
BRU
3
1_555
D
BRU
4
A
P
BRU
4
1_555
metalc
2.432
D
BRU
2
A
OP1
BRU
2
1_555
A
NA
2
D
NA
NA
1_555
metalc
2.818
D
BRU
3
A
O3'
BRU
3
1_555
A
MG
1
C
MG
MG
1_555
metalc
1.894
A
MG
1
C
MG
MG
1_555
A
ASP
434
B
OD2
ASP
287
1_555
metalc
2.401
A
NA
2
D
NA
NA
1_555
A
THR
253
B
O
THR
106
1_555
metalc
3.115
A
NA
2
D
NA
NA
1_555
A
VAL
255
B
O
VAL
108
1_555
metalc
2.341
A
NA
2
D
NA
NA
1_555
A
VAL
258
B
O
VAL
111
1_555
TRANSFERASE/DNA
polymerase, nucleotidyl transferase, TRANSFERASE-DNA COMPLEX
A
GLY
452
B
GLY
305
1
A
SER
453
B
SER
306
-1.13
AAK07885
GB
2
148
12802443
KKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEG
IIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPE
AEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEK
FKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLRRYATHE
RKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA
1KDH
PDB
1
1KDH
148
510
1KDH
148
510
12802443
A
1
1
363
1
4
1KDH
1
4
1KDH
D
2
1
4
5
3
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
327
B
LEU
180
A
THR
331
B
THR
184
A
ASP
343
B
ASP
196
A
SER
350
B
SER
203
A
TRP
428
B
TRP
281
A
PRO
439
B
PRO
292
A
LYS
403
B
LYS
256
A
ASP
411
B
ASP
264
A
LEU
375
B
LEU
228
A
ASP
379
B
ASP
232
A
MET
470
B
MET
323
A
LEU
472
B
LEU
325
A
LEU
477
B
LEU
330
A
ASP
479
B
ASP
332
A
VAL
484
B
VAL
337
A
LEU
486
B
LEU
339
BINDING SITE FOR RESIDUE MG A 1
A
MG
1
Software
6
BINDING SITE FOR RESIDUE NA A 2
A
NA
2
Software
4
A
ASP
343
B
ASP
196
6
1_555
A
ASP
345
B
ASP
198
6
1_555
A
ASP
434
B
ASP
287
6
1_555
A
TRP
450
B
TRP
303
6
1_555
D
BRU
3
A
BRU
3
6
1_555
D
BRU
4
A
BRU
4
6
1_555
A
THR
253
B
THR
106
4
1_555
A
VAL
255
B
VAL
108
4
1_555
A
VAL
258
B
VAL
111
4
1_555
D
BRU
2
A
BRU
2
4
1_555
19
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