0.021368 0.000000 0.000000 0.000000 0.011765 0.000000 0.000000 0.000000 0.008977 0.00000 0.00000 0.00000 Delarue, M. Boule, J.B. Lescar, J. Expert-Bezancon, N. Jourdan, N. Sukumar, N. Rougeon, F. Papanicolaou, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 46.800 85.000 111.400 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H12 Br N2 O8 P 387.078 n 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 N C N 76 N N N 77 N C N 78 N C N 79 N C N 80 N O N 81 N O N 82 N BR N 83 R C N 84 N C N 85 S C N 86 R C N 87 N O N 88 N O N 89 N C N 90 N O N 91 N P N 92 N O N 93 N O N 94 N O N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N N N 108 R C N 109 N C N 110 N O N 111 N C N 112 N S N 113 N O N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N N N 122 S C N 123 N C N 124 N O N 125 N C N 126 N C N 127 N C N 128 N O N 129 N N N 130 N O N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N N N 142 S C N 143 N C N 144 N O N 145 N C N 146 N C N 147 N C N 148 N O N 149 N O N 150 N O N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N N N 161 N C N 162 N C N 163 N O N 164 N O N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C Y 175 N C Y 176 N N Y 177 N C Y 178 N C Y 179 N N N 180 N O N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N O N 192 N H N 193 N H N 194 N N N 195 S C N 196 N C N 197 N O N 198 S C N 199 N C N 200 N C N 201 N C N 202 N O N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N C N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N N N 239 S C N 240 N C N 241 N O N 242 N C N 243 N C N 244 N C N 245 N C N 246 N N N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N N N 264 S C N 265 N C N 266 N O N 267 N C N 268 N C N 269 N S N 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N MG N 284 N NA N 285 N N N 286 S C N 287 N C N 288 N O N 289 N C Y 290 N C Y 291 N C Y 292 N C Y 293 N C Y 294 N C Y 295 N C N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C N 313 N C N 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C N 330 N O N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 R C N 344 N O N 345 N C N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N N N 357 S C N 358 N C N 359 N O N 360 N C Y 361 N C Y 362 N C Y 363 N C Y 364 N N Y 365 N C Y 366 N C Y 367 N C Y 368 N C Y 369 N C N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 N C Y 388 N C Y 389 N C Y 390 N C Y 391 N C Y 392 N C Y 393 N C N 394 N O N 395 N O N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N N N 408 S C N 409 N C N 410 N O N 411 N C N 412 N C N 413 N C N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing Y 174 N sing Y 175 N doub Y 176 N doub N 177 N sing Y 178 N sing N 179 N sing Y 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N doub N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing Y 282 N doub Y 283 N sing Y 284 N sing N 285 N sing Y 286 N doub N 287 N sing Y 288 N doub N 289 N sing Y 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing Y 351 N doub Y 352 N sing Y 353 N sing N 354 N sing Y 355 N doub Y 356 N sing Y 357 N sing N 358 N sing Y 359 N sing Y 360 N doub N 361 N sing Y 362 N doub N 363 N sing Y 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing Y 379 N doub Y 380 N sing Y 381 N sing N 382 N sing Y 383 N doub N 384 N sing Y 385 N doub N 386 N sing Y 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing UK EMBO J. EMJODG 0897 0261-4189 21 427 439 10.1093/emboj/21.3.427 11823435 Crystal structures of a template-independent DNA polymerase: murine terminal deoxynucleotidyltransferase. 2002 10.2210/pdb1kdh/pdb pdb_00001kdh 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 1999-09-23 ADSC QUANTUM 4 DIAMOND SINGLE WAVELENGTH M x-ray 1 0.960 1.0 ID14-4 ESRF 0.960 SYNCHROTRON ESRF BEAMLINE ID14-4 1431.294 5'-D(P*(BRU)P*(BRU)P*(BRU)P*(BRU))-3' 1 syn polymer 41915.836 Terminal deoxynucleotidyltransferase short isoform 2.7.7.31 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 1 nat water no yes (BRU)(BRU)(BRU)(BRU) UUUU D polydeoxyribonucleotide no no KKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEG IIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPE AEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEK FKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLRRYATHE RKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA KKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEG IIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPE AEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEK FKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLRRYATHE RKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia sample 10090 Mus musculus 562 Escherichia coli 1 2.57 52.14 VAPOR DIFFUSION, HANGING DROP 6.0 PEG 6K, 1M LiCl, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K 290 PEG 6K 1 LiCl 1 pdbx_struct_conn_angle struct_conn struct_conn_type chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Version format compliance Version format compliance Derived calculations Data collection Database references Derived calculations Refinement description 1 0 2002-05-13 1 1 2008-04-27 1 2 2011-07-13 1 3 2019-11-20 1 4 2023-08-16 _struct_conn_type.id _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Unliganded murine terminal deoxynucleotidyl transferase Ternary complex of human polymerase beta TdT complexed with ddATP RCSB Y RCSB 2001-11-13 REL REL MG MAGNESIUM ION NA SODIUM ION HOH water 1JMS pdb entry 1jms PDB experimental model MG 1 3 MG MG 1 A NA 2 4 NA NA 2 A HOH 3 5 HOH HOH 3 A +U 1 n 1 BRU 1 D +U 2 n 2 BRU 2 D +U 3 n 3 BRU 3 D +U 4 n 4 BRU 4 D LYS 148 n 1 LYS 148 A LYS 149 n 2 LYS 149 A ILE 150 n 3 ILE 150 A SER 151 n 4 SER 151 A GLN 152 n 5 GLN 152 A TYR 153 n 6 TYR 153 A ALA 154 n 7 ALA 154 A CYS 155 n 8 CYS 155 A GLN 156 n 9 GLN 156 A ARG 157 n 10 ARG 157 A ARG 158 n 11 ARG 158 A THR 159 n 12 THR 159 A THR 160 n 13 THR 160 A LEU 161 n 14 LEU 161 A ASN 162 n 15 ASN 162 A ASN 163 n 16 ASN 163 A TYR 164 n 17 TYR 164 A ASN 165 n 18 ASN 165 A GLN 166 n 19 GLN 166 A LEU 167 n 20 LEU 167 A PHE 168 n 21 PHE 168 A THR 169 n 22 THR 169 A ASP 170 n 23 ASP 170 A ALA 171 n 24 ALA 171 A LEU 172 n 25 LEU 172 A ASP 173 n 26 ASP 173 A ILE 174 n 27 ILE 174 A LEU 175 n 28 LEU 175 A ALA 176 n 29 ALA 176 A GLU 177 n 30 GLU 177 A ASN 178 n 31 ASN 178 A ASP 179 n 32 ASP 179 A GLU 180 n 33 GLU 180 A LEU 181 n 34 LEU 181 A ARG 182 n 35 ARG 182 A GLU 183 n 36 GLU 183 A ASN 184 n 37 ASN 184 A GLU 185 n 38 GLU 185 A GLY 186 n 39 GLY 186 A SER 187 n 40 SER 187 A CYS 188 n 41 CYS 188 A LEU 189 n 42 LEU 189 A ALA 190 n 43 ALA 190 A PHE 191 n 44 PHE 191 A MET 192 n 45 MET 192 A ARG 193 n 46 ARG 193 A ALA 194 n 47 ALA 194 A SER 195 n 48 SER 195 A SER 196 n 49 SER 196 A VAL 197 n 50 VAL 197 A LEU 198 n 51 LEU 198 A LYS 199 n 52 LYS 199 A SER 200 n 53 SER 200 A LEU 201 n 54 LEU 201 A PRO 202 n 55 PRO 202 A PHE 203 n 56 PHE 203 A PRO 204 n 57 PRO 204 A ILE 205 n 58 ILE 205 A THR 206 n 59 THR 206 A SER 207 n 60 SER 207 A MET 208 n 61 MET 208 A LYS 209 n 62 LYS 209 A ASP 210 n 63 ASP 210 A THR 211 n 64 THR 211 A GLU 212 n 65 GLU 212 A GLY 213 n 66 GLY 213 A ILE 214 n 67 ILE 214 A PRO 215 n 68 PRO 215 A CYS 216 n 69 CYS 216 A LEU 217 n 70 LEU 217 A GLY 218 n 71 GLY 218 A ASP 219 n 72 ASP 219 A LYS 220 n 73 LYS 220 A VAL 221 n 74 VAL 221 A LYS 222 n 75 LYS 222 A SER 223 n 76 SER 223 A ILE 224 n 77 ILE 224 A ILE 225 n 78 ILE 225 A GLU 226 n 79 GLU 226 A GLY 227 n 80 GLY 227 A ILE 228 n 81 ILE 228 A ILE 229 n 82 ILE 229 A GLU 230 n 83 GLU 230 A ASP 231 n 84 ASP 231 A GLY 232 n 85 GLY 232 A GLU 233 n 86 GLU 233 A SER 234 n 87 SER 234 A SER 235 n 88 SER 235 A GLU 236 n 89 GLU 236 A ALA 237 n 90 ALA 237 A LYS 238 n 91 LYS 238 A ALA 239 n 92 ALA 239 A VAL 240 n 93 VAL 240 A LEU 241 n 94 LEU 241 A ASN 242 n 95 ASN 242 A ASP 243 n 96 ASP 243 A GLU 244 n 97 GLU 244 A ARG 245 n 98 ARG 245 A TYR 246 n 99 TYR 246 A LYS 247 n 100 LYS 247 A SER 248 n 101 SER 248 A PHE 249 n 102 PHE 249 A LYS 250 n 103 LYS 250 A LEU 251 n 104 LEU 251 A PHE 252 n 105 PHE 252 A THR 253 n 106 THR 253 A SER 254 n 107 SER 254 A VAL 255 n 108 VAL 255 A PHE 256 n 109 PHE 256 A GLY 257 n 110 GLY 257 A VAL 258 n 111 VAL 258 A GLY 259 n 112 GLY 259 A LEU 260 n 113 LEU 260 A LYS 261 n 114 LYS 261 A THR 262 n 115 THR 262 A ALA 263 n 116 ALA 263 A GLU 264 n 117 GLU 264 A LYS 265 n 118 LYS 265 A TRP 266 n 119 TRP 266 A PHE 267 n 120 PHE 267 A ARG 268 n 121 ARG 268 A MET 269 n 122 MET 269 A GLY 270 n 123 GLY 270 A PHE 271 n 124 PHE 271 A ARG 272 n 125 ARG 272 A THR 273 n 126 THR 273 A LEU 274 n 127 LEU 274 A SER 275 n 128 SER 275 A LYS 276 n 129 LYS 276 A ILE 277 n 130 ILE 277 A GLN 278 n 131 GLN 278 A SER 279 n 132 SER 279 A ASP 280 n 133 ASP 280 A LYS 281 n 134 LYS 281 A SER 282 n 135 SER 282 A LEU 283 n 136 LEU 283 A ARG 284 n 137 ARG 284 A PHE 285 n 138 PHE 285 A THR 286 n 139 THR 286 A GLN 287 n 140 GLN 287 A MET 288 n 141 MET 288 A GLN 289 n 142 GLN 289 A LYS 290 n 143 LYS 290 A ALA 291 n 144 ALA 291 A GLY 292 n 145 GLY 292 A PHE 293 n 146 PHE 293 A LEU 294 n 147 LEU 294 A TYR 295 n 148 TYR 295 A TYR 296 n 149 TYR 296 A GLU 297 n 150 GLU 297 A ASP 298 n 151 ASP 298 A LEU 299 n 152 LEU 299 A VAL 300 n 153 VAL 300 A SER 301 n 154 SER 301 A CYS 302 n 155 CYS 302 A VAL 303 n 156 VAL 303 A ASN 304 n 157 ASN 304 A ARG 305 n 158 ARG 305 A PRO 306 n 159 PRO 306 A GLU 307 n 160 GLU 307 A ALA 308 n 161 ALA 308 A GLU 309 n 162 GLU 309 A ALA 310 n 163 ALA 310 A VAL 311 n 164 VAL 311 A SER 312 n 165 SER 312 A MET 313 n 166 MET 313 A LEU 314 n 167 LEU 314 A VAL 315 n 168 VAL 315 A LYS 316 n 169 LYS 316 A GLU 317 n 170 GLU 317 A ALA 318 n 171 ALA 318 A VAL 319 n 172 VAL 319 A VAL 320 n 173 VAL 320 A THR 321 n 174 THR 321 A PHE 322 n 175 PHE 322 A LEU 323 n 176 LEU 323 A PRO 324 n 177 PRO 324 A ASP 325 n 178 ASP 325 A ALA 326 n 179 ALA 326 A LEU 327 n 180 LEU 327 A VAL 328 n 181 VAL 328 A THR 329 n 182 THR 329 A MET 330 n 183 MET 330 A THR 331 n 184 THR 331 A GLY 332 n 185 GLY 332 A GLY 333 n 186 GLY 333 A PHE 334 n 187 PHE 334 A ARG 335 n 188 ARG 335 A ARG 336 n 189 ARG 336 A GLY 337 n 190 GLY 337 A LYS 338 n 191 LYS 338 A MET 339 n 192 MET 339 A THR 340 n 193 THR 340 A GLY 341 n 194 GLY 341 A HIS 342 n 195 HIS 342 A ASP 343 n 196 ASP 343 A VAL 344 n 197 VAL 344 A ASP 345 n 198 ASP 345 A PHE 346 n 199 PHE 346 A LEU 347 n 200 LEU 347 A ILE 348 n 201 ILE 348 A THR 349 n 202 THR 349 A SER 350 n 203 SER 350 A PRO 351 n 204 PRO 351 A GLU 352 n 205 GLU 352 A ALA 353 n 206 ALA 353 A THR 354 n 207 THR 354 A GLU 355 n 208 GLU 355 A ASP 356 n 209 ASP 356 A GLU 357 n 210 GLU 357 A GLU 358 n 211 GLU 358 A GLN 359 n 212 GLN 359 A GLN 360 n 213 GLN 360 A LEU 361 n 214 LEU 361 A LEU 362 n 215 LEU 362 A HIS 363 n 216 HIS 363 A LYS 364 n 217 LYS 364 A VAL 365 n 218 VAL 365 A THR 366 n 219 THR 366 A ASP 367 n 220 ASP 367 A PHE 368 n 221 PHE 368 A TRP 369 n 222 TRP 369 A LYS 370 n 223 LYS 370 A GLN 371 n 224 GLN 371 A GLN 372 n 225 GLN 372 A GLY 373 n 226 GLY 373 A LEU 374 n 227 LEU 374 A LEU 375 n 228 LEU 375 A LEU 376 n 229 LEU 376 A TYR 377 n 230 TYR 377 A CYS 378 n 231 CYS 378 A ASP 379 n 232 ASP 379 A ILE 380 n 233 ILE 380 A LEU 381 n 234 LEU 381 A GLU 382 n 235 GLU 382 A SER 383 n 236 SER 383 A THR 384 n 237 THR 384 A PHE 385 n 238 PHE 385 A GLU 386 n 239 GLU 386 A LYS 387 n 240 LYS 387 A PHE 388 n 241 PHE 388 A LYS 389 n 242 LYS 389 A GLN 390 n 243 GLN 390 A PRO 391 n 244 PRO 391 A SER 392 n 245 SER 392 A ARG 393 n 246 ARG 393 A n 247 394 A n 248 395 A n 249 396 A n 250 397 A LEU 398 n 251 LEU 398 A ASP 399 n 252 ASP 399 A HIS 400 n 253 HIS 400 A PHE 401 n 254 PHE 401 A GLN 402 n 255 GLN 402 A LYS 403 n 256 LYS 403 A CYS 404 n 257 CYS 404 A PHE 405 n 258 PHE 405 A LEU 406 n 259 LEU 406 A ILE 407 n 260 ILE 407 A LEU 408 n 261 LEU 408 A LYS 409 n 262 LYS 409 A LEU 410 n 263 LEU 410 A ASP 411 n 264 ASP 411 A HIS 412 n 265 HIS 412 A GLY 413 n 266 GLY 413 A ARG 414 n 267 ARG 414 A VAL 415 n 268 VAL 415 A HIS 416 n 269 HIS 416 A SER 417 n 270 SER 417 A GLU 418 n 271 GLU 418 A LYS 419 n 272 LYS 419 A SER 420 n 273 SER 420 A n 274 421 A n 275 422 A n 276 423 A GLU 424 n 277 GLU 424 A GLY 425 n 278 GLY 425 A LYS 426 n 279 LYS 426 A GLY 427 n 280 GLY 427 A TRP 428 n 281 TRP 428 A LYS 429 n 282 LYS 429 A ALA 430 n 283 ALA 430 A ILE 431 n 284 ILE 431 A ARG 432 n 285 ARG 432 A VAL 433 n 286 VAL 433 A ASP 434 n 287 ASP 434 A LEU 435 n 288 LEU 435 A VAL 436 n 289 VAL 436 A MET 437 n 290 MET 437 A CYS 438 n 291 CYS 438 A PRO 439 n 292 PRO 439 A TYR 440 n 293 TYR 440 A ASP 441 n 294 ASP 441 A ARG 442 n 295 ARG 442 A ARG 443 n 296 ARG 443 A ALA 444 n 297 ALA 444 A PHE 445 n 298 PHE 445 A ALA 446 n 299 ALA 446 A LEU 447 n 300 LEU 447 A LEU 448 n 301 LEU 448 A GLY 449 n 302 GLY 449 A TRP 450 n 303 TRP 450 A THR 451 n 304 THR 451 A GLY 452 n 305 GLY 452 A SER 453 n 306 SER 453 A ARG 454 n 307 ARG 454 A GLN 455 n 308 GLN 455 A PHE 456 n 309 PHE 456 A GLU 457 n 310 GLU 457 A ARG 458 n 311 ARG 458 A ASP 459 n 312 ASP 459 A LEU 460 n 313 LEU 460 A ARG 461 n 314 ARG 461 A ARG 462 n 315 ARG 462 A TYR 463 n 316 TYR 463 A ALA 464 n 317 ALA 464 A THR 465 n 318 THR 465 A HIS 466 n 319 HIS 466 A GLU 467 n 320 GLU 467 A ARG 468 n 321 ARG 468 A LYS 469 n 322 LYS 469 A MET 470 n 323 MET 470 A MET 471 n 324 MET 471 A LEU 472 n 325 LEU 472 A ASP 473 n 326 ASP 473 A ASN 474 n 327 ASN 474 A HIS 475 n 328 HIS 475 A ALA 476 n 329 ALA 476 A LEU 477 n 330 LEU 477 A TYR 478 n 331 TYR 478 A ASP 479 n 332 ASP 479 A ARG 480 n 333 ARG 480 A THR 481 n 334 THR 481 A LYS 482 n 335 LYS 482 A ARG 483 n 336 ARG 483 A VAL 484 n 337 VAL 484 A PHE 485 n 338 PHE 485 A LEU 486 n 339 LEU 486 A GLU 487 n 340 GLU 487 A ALA 488 n 341 ALA 488 A GLU 489 n 342 GLU 489 A SER 490 n 343 SER 490 A GLU 491 n 344 GLU 491 A GLU 492 n 345 GLU 492 A GLU 493 n 346 GLU 493 A ILE 494 n 347 ILE 494 A PHE 495 n 348 PHE 495 A ALA 496 n 349 ALA 496 A HIS 497 n 350 HIS 497 A LEU 498 n 351 LEU 498 A GLY 499 n 352 GLY 499 A LEU 500 n 353 LEU 500 A ASP 501 n 354 ASP 501 A TYR 502 n 355 TYR 502 A ILE 503 n 356 ILE 503 A GLU 504 n 357 GLU 504 A PRO 505 n 358 PRO 505 A TRP 506 n 359 TRP 506 A GLU 507 n 360 GLU 507 A ARG 508 n 361 ARG 508 A ASN 509 n 362 ASN 509 A ALA 510 n 363 ALA 510 A author_defined_assembly 2 dimeric D BRU 2 A OP1 BRU 2 1_555 A NA 2 D NA NA 1_555 A THR 253 B O THR 106 1_555 151.3 D BRU 2 A OP1 BRU 2 1_555 A NA 2 D NA NA 1_555 A VAL 255 B O VAL 108 1_555 77.3 A THR 253 B O THR 106 1_555 A NA 2 D NA NA 1_555 A VAL 255 B O VAL 108 1_555 76.4 D BRU 2 A OP1 BRU 2 1_555 A NA 2 D NA NA 1_555 A VAL 258 B O VAL 111 1_555 82.5 A THR 253 B O THR 106 1_555 A NA 2 D NA NA 1_555 A VAL 258 B O VAL 111 1_555 86.0 A VAL 255 B O VAL 108 1_555 A NA 2 D NA NA 1_555 A VAL 258 B O VAL 111 1_555 89.2 D BRU 3 A O3' BRU 3 1_555 A MG 1 C MG MG 1_555 A ASP 434 B OD2 ASP 287 1_555 156.0 D BRU 1 A BRU 1 DU D BRU 2 A BRU 2 DU D BRU 3 A BRU 3 DU D BRU 4 A BRU 4 DU 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 327 B N LEU 180 A O THR 349 B O THR 202 A N ILE 348 B N ILE 201 A O VAL 436 B O VAL 289 A O ILE 431 B O ILE 284 A N LEU 408 B N LEU 261 A O PHE 405 B O PHE 258 A N ASP 379 B N ASP 232 A N MET 471 B N MET 324 A O TYR 478 B O TYR 331 A N LEU 477 B N LEU 330 A O LEU 486 B O LEU 339 1 A CG LYS 148 B CG LYS 1 1 Y 1 A CD LYS 148 B CD LYS 1 1 Y 1 A CE LYS 148 B CE LYS 1 1 Y 1 A NZ LYS 148 B NZ LYS 1 1 Y 1 A CG LYS 149 B CG LYS 2 1 Y 1 A CD LYS 149 B CD LYS 2 1 Y 1 A CE LYS 149 B CE LYS 2 1 Y 1 A NZ LYS 149 B NZ LYS 2 1 Y 1 A CG GLU 212 B CG GLU 65 1 Y 1 A CD GLU 212 B CD GLU 65 1 Y 1 A OE1 GLU 212 B OE1 GLU 65 1 Y 1 A OE2 GLU 212 B OE2 GLU 65 1 Y 1 A CG LYS 238 B CG LYS 91 1 Y 1 A CD LYS 238 B CD LYS 91 1 Y 1 A CE LYS 238 B CE LYS 91 1 Y 1 A NZ LYS 238 B NZ LYS 91 1 Y 1 A CG LYS 387 B CG LYS 240 1 Y 1 A CD LYS 387 B CD LYS 240 1 Y 1 A CE LYS 387 B CE LYS 240 1 Y 1 A NZ LYS 387 B NZ LYS 240 1 Y 1 A CG ARG 393 B CG ARG 246 1 Y 1 A CD ARG 393 B CD ARG 246 1 Y 1 A NE ARG 393 B NE ARG 246 1 Y 1 A CZ ARG 393 B CZ ARG 246 1 Y 1 A NH1 ARG 393 B NH1 ARG 246 1 Y 1 A NH2 ARG 393 B NH2 ARG 246 1 Y 1 A CG LEU 398 B CG LEU 251 1 Y 1 A CD1 LEU 398 B CD1 LEU 251 1 Y 1 A CD2 LEU 398 B CD2 LEU 251 1 Y 1 A CG GLU 418 B CG GLU 271 1 Y 1 A CD GLU 418 B CD GLU 271 1 Y 1 A OE1 GLU 418 B OE1 GLU 271 1 Y 1 A OE2 GLU 418 B OE2 GLU 271 1 Y 1 A CG LYS 419 B CG LYS 272 1 Y 1 A CD LYS 419 B CD LYS 272 1 Y 1 A CE LYS 419 B CE LYS 272 1 Y 1 A NZ LYS 419 B NZ LYS 272 1 Y 1 A OG SER 420 B OG SER 273 1 Y 1 A CG GLU 424 B CG GLU 277 1 Y 1 A CD GLU 424 B CD GLU 277 1 Y 1 A OE1 GLU 424 B OE1 GLU 277 1 Y 1 A OE2 GLU 424 B OE2 GLU 277 1 Y 1 A CG LYS 426 B CG LYS 279 1 Y 1 A CD LYS 426 B CD LYS 279 1 Y 1 A CE LYS 426 B CE LYS 279 1 Y 1 A NZ LYS 426 B NZ LYS 279 1 Y 1 A LYS 394 B LYS 247 1 Y 1 A VAL 395 B VAL 248 1 Y 1 A ASP 396 B ASP 249 1 Y 1 A ALA 397 B ALA 250 1 Y 1 A GLY 421 B GLY 274 1 Y 1 A GLN 422 B GLN 275 1 Y 1 A GLN 423 B GLN 276 1 Y 1 9.38 1.50 119.30 128.68 A A A C N CA LEU PRO PRO 201 202 202 Y 1 A A NE1 CE2 TRP TRP 428 428 0.113 0.013 1.371 1.484 N 1 A LYS 149 50.11 81.94 1 A SER 151 -45.46 156.41 1 A THR 160 -79.90 -157.75 1 A ASN 162 -105.74 72.49 1 A ASN 184 -114.26 74.61 1 A GLU 212 -67.54 67.13 1 A GLU 230 -83.65 -85.57 1 A SER 254 -66.68 0.12 1 A LYS 261 -49.83 -78.99 1 A ASP 280 -43.08 107.78 1 A SER 282 -162.87 -58.66 1 A LEU 323 -157.02 74.50 1 A PRO 324 -57.34 -5.61 1 A THR 331 -109.07 -166.47 1 A ALA 353 -36.54 130.91 1 A GLN 359 -88.04 -74.13 1 A ASP 399 48.04 76.72 1 A GLN 402 -63.32 99.39 1 A CYS 404 -166.78 104.74 1 A THR 465 -66.78 -73.36 protein_rep.param cis_peptide.param water_rep.param dna-rna.param ion.param 4.218 12.747 -16.94 0.297 0.239 0.241 0.241 3.00 30.0 405 8579 8579 91.5 random 1 THROUGHOUT 0 0 MOLECULAR REPLACEMENT pdb entry 1jms Engh & Huber 3.00 30.0 1 2930 6 77 2846 1.437 1.5 2.579 2.0 1.874 2.0 3.107 2.5 1.38 0.0084 3.00 30.0 1KDH 8579 8579 0. 0. 0.075 0.075 1 8.5 2.8 91.5 0.608 3.00 3.11 2.5 1.8 87.4 refinement CNS data reduction DENZO data scaling SCALEPACK phasing CNS Binary Complex of Murine Terminal Deoxynucleotidyl Transferase with a Primer Single Stranded DNA 1 N N 2 N N 3 N N 4 N N 5 N N A TYR 153 B TYR 6 HELX_P A ARG 157 B ARG 10 5 1 5 A ASN 165 B ASN 18 HELX_P A ARG 182 B ARG 35 1 2 18 A ASN 184 B ASN 37 HELX_P A SER 200 B SER 53 1 3 17 A SER 207 B SER 60 HELX_P A GLU 212 B GLU 65 5 4 6 A GLY 218 B GLY 71 HELX_P A GLY 232 B GLY 85 1 5 15 A SER 234 B SER 87 HELX_P A ASP 243 B ASP 96 1 6 10 A ASP 243 B ASP 96 HELX_P A SER 254 B SER 107 1 7 12 A GLY 259 B GLY 112 HELX_P A MET 269 B MET 122 1 8 11 A THR 273 B THR 126 HELX_P A ASP 280 B ASP 133 1 9 8 A THR 286 B THR 139 HELX_P A TYR 295 B TYR 148 1 10 10 A TYR 295 B TYR 148 HELX_P A SER 301 B SER 154 1 11 7 A ASN 304 B ASN 157 HELX_P A LEU 323 B LEU 176 1 12 20 A GLY 333 B GLY 186 HELX_P A GLY 337 B GLY 190 5 13 5 A THR 354 B THR 207 HELX_P A GLN 371 B GLN 224 1 14 18 A GLY 413 B GLY 266 HELX_P A VAL 415 B VAL 268 5 15 3 A ARG 442 B ARG 295 HELX_P A THR 451 B THR 304 1 16 10 A SER 453 B SER 306 HELX_P A LYS 469 B LYS 322 1 17 17 A SER 490 B SER 343 HELX_P A GLY 499 B GLY 352 1 18 10 A GLU 504 B GLU 357 HELX_P A ARG 508 B ARG 361 5 19 5 covale 1.605 both D BRU 1 A O3' BRU 1 1_555 D BRU 2 A P BRU 2 1_555 covale 1.607 both D BRU 2 A O3' BRU 2 1_555 D BRU 3 A P BRU 3 1_555 covale 1.614 both D BRU 3 A O3' BRU 3 1_555 D BRU 4 A P BRU 4 1_555 metalc 2.432 D BRU 2 A OP1 BRU 2 1_555 A NA 2 D NA NA 1_555 metalc 2.818 D BRU 3 A O3' BRU 3 1_555 A MG 1 C MG MG 1_555 metalc 1.894 A MG 1 C MG MG 1_555 A ASP 434 B OD2 ASP 287 1_555 metalc 2.401 A NA 2 D NA NA 1_555 A THR 253 B O THR 106 1_555 metalc 3.115 A NA 2 D NA NA 1_555 A VAL 255 B O VAL 108 1_555 metalc 2.341 A NA 2 D NA NA 1_555 A VAL 258 B O VAL 111 1_555 TRANSFERASE/DNA polymerase, nucleotidyl transferase, TRANSFERASE-DNA COMPLEX A GLY 452 B GLY 305 1 A SER 453 B SER 306 -1.13 AAK07885 GB 2 148 12802443 KKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEG IIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPE AEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEK FKQPSRKVDALDHFQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRAFALLGWTGSRQFERDLRRYATHE RKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDYIEPWERNA 1KDH PDB 1 1KDH 148 510 1KDH 148 510 12802443 A 1 1 363 1 4 1KDH 1 4 1KDH D 2 1 4 5 3 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 327 B LEU 180 A THR 331 B THR 184 A ASP 343 B ASP 196 A SER 350 B SER 203 A TRP 428 B TRP 281 A PRO 439 B PRO 292 A LYS 403 B LYS 256 A ASP 411 B ASP 264 A LEU 375 B LEU 228 A ASP 379 B ASP 232 A MET 470 B MET 323 A LEU 472 B LEU 325 A LEU 477 B LEU 330 A ASP 479 B ASP 332 A VAL 484 B VAL 337 A LEU 486 B LEU 339 BINDING SITE FOR RESIDUE MG A 1 A MG 1 Software 6 BINDING SITE FOR RESIDUE NA A 2 A NA 2 Software 4 A ASP 343 B ASP 196 6 1_555 A ASP 345 B ASP 198 6 1_555 A ASP 434 B ASP 287 6 1_555 A TRP 450 B TRP 303 6 1_555 D BRU 3 A BRU 3 6 1_555 D BRU 4 A BRU 4 6 1_555 A THR 253 B THR 106 4 1_555 A VAL 255 B VAL 108 4 1_555 A VAL 258 B VAL 111 4 1_555 D BRU 2 A BRU 2 4 1_555 19 P 21 21 21