0.013677 0.007896 0.000000 0.000000 0.015792 0.000000 0.000000 0.000000 0.032160 0.00000 0.00000 0.00000 Inoue, T. Gotowda, M. Hamada, K. Kohzuma, T. Yoshizaki, F. Sugimura, Y. Kai, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 73.118 73.118 31.095 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cu 2 63.546 COPPER (II) ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N O N 21 N N N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N N N 32 S C N 33 N C N 34 N O N 35 N C N 36 N C N 37 N O N 38 N O N 39 N O N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N CU N 48 N N N 49 R C N 50 N C N 51 N O N 52 N C N 53 N S N 54 N O N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N N N 63 S C N 64 N C N 65 N O N 66 N C N 67 N C N 68 N C N 69 N O N 70 N O N 71 N O N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 N C N 83 N C N 84 N O N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N N N 92 S C N 93 N C N 94 N O N 95 N C Y 96 N C Y 97 N N Y 98 N C Y 99 N C Y 100 N N N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N O N 113 N H N 114 N H N 115 N N N 116 S C N 117 N C N 118 N O N 119 S C N 120 N C N 121 N C N 122 N C N 123 N O N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C N 142 N C N 143 N C N 144 N C N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N N N 160 S C N 161 N C N 162 N O N 163 N C N 164 N C N 165 N C N 166 N C N 167 N N N 168 N O N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N S N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N N N 205 S C N 206 N C N 207 N O N 208 N C Y 209 N C Y 210 N C Y 211 N C Y 212 N C Y 213 N C Y 214 N C N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C N 249 N O N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N N N 259 S C N 260 N C N 261 N O N 262 R C N 263 N O N 264 N C N 265 N O N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C Y 280 N C Y 281 N C Y 282 N C Y 283 N C Y 284 N C Y 285 N C N 286 N O N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N N N 300 S C N 301 N C N 302 N O N 303 N C N 304 N C N 305 N C N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N doub N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N doub N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N doub N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing Y 95 N sing Y 96 N doub Y 97 N doub N 98 N sing Y 99 N sing N 100 N sing Y 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing Y 203 N doub Y 204 N sing Y 205 N sing N 206 N sing Y 207 N doub N 208 N sing Y 209 N doub N 210 N sing Y 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing Y 272 N doub Y 273 N sing Y 274 N sing N 275 N sing Y 276 N doub N 277 N sing Y 278 N doub N 279 N sing Y 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 274 11817 11823 10.1074/jbc.274.17.11817 10206999 The structure and unusual pH dependence of plastocyanin from the fern Dryopteris crassirhizoma. The protonation of an active site histidine is hindered by pi-pi interactions. 1999 10.2210/pdb1kdj/pdb pdb_00001kdj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 DIFFRACTOMETER 1996-02-20 WEISSENBERG SI(111) M x-ray 1 1.0 1.0 BL-6B Photon Factory 1.0 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6B OXIDIZED 10785.973 PLASTOCYANIN 1 nat polymer 63.546 COPPER (II) ION 1 syn non-polymer 18.015 water 49 nat water no no AKVEVGDEVGNFKFYPDSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKVSTP GTYTFYCTPHKSANMKGTLTVK AKVEVGDEVGNFKFYPDSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKVSTP GTYTFYCTPHKSANMKGTLTVK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Adiantum sample 13818 Adiantum capillus-veneris 1 2.4 48 4.5 pH 4.5 chem_comp_atom chem_comp_bond database_2 pdbx_database_status struct_conn struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other Refinement description 1 0 1999-05-11 1 1 2008-03-24 1 2 2011-07-13 1 3 2024-02-07 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-05-08 REL CU COPPER (II) ION HOH water 1PLC POPLAR PLASTOCYANIN PDB experimental model CU 103 2 CU CU 103 A HOH 201 3 HOH HOH 201 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 217 3 HOH HOH 217 A HOH 218 3 HOH HOH 218 A HOH 219 3 HOH HOH 219 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 224 3 HOH HOH 224 A HOH 225 3 HOH HOH 225 A HOH 226 3 HOH HOH 226 A HOH 227 3 HOH HOH 227 A HOH 228 3 HOH HOH 228 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 231 3 HOH HOH 231 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 234 3 HOH HOH 234 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 243 3 HOH HOH 243 A HOH 244 3 HOH HOH 244 A HOH 245 3 HOH HOH 245 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 249 3 HOH HOH 249 A HOH 250 3 HOH HOH 250 A HOH 251 3 HOH HOH 251 A ALA 1 n 1 ALA 1 A LYS 2 n 2 LYS 2 A VAL 3 n 3 VAL 3 A GLU 4 n 4 GLU 4 A VAL 5 n 5 VAL 5 A GLY 6 n 6 GLY 6 A ASP 7 n 7 ASP 7 A GLU 8 n 8 GLU 8 A VAL 9 n 9 VAL 9 A GLY 10 n 10 GLY 10 A ASN 11 n 11 ASN 11 A PHE 12 n 12 PHE 12 A LYS 13 n 13 LYS 13 A PHE 14 n 14 PHE 14 A TYR 15 n 15 TYR 15 A PRO 16 n 16 PRO 16 A ASP 17 n 17 ASP 17 A SER 18 n 18 SER 18 A ILE 19 n 19 ILE 19 A THR 20 n 20 THR 20 A VAL 21 n 21 VAL 21 A SER 22 n 22 SER 22 A ALA 23 n 23 ALA 23 A GLY 24 n 24 GLY 24 A GLU 25 n 25 GLU 25 A ALA 26 n 26 ALA 26 A VAL 27 n 27 VAL 27 A GLU 28 n 28 GLU 28 A PHE 29 n 29 PHE 29 A THR 30 n 30 THR 30 A LEU 31 n 31 LEU 31 A VAL 32 n 32 VAL 32 A GLY 33 n 33 GLY 33 A GLU 34 n 34 GLU 34 A THR 35 n 35 THR 35 A GLY 36 n 36 GLY 36 A HIS 37 n 37 HIS 37 A ASN 38 n 38 ASN 38 A ILE 39 n 39 ILE 39 A VAL 40 n 40 VAL 40 A PHE 41 n 41 PHE 41 A ASP 42 n 42 ASP 42 A ILE 43 n 43 ILE 43 A PRO 44 n 44 PRO 44 A ALA 45 n 45 ALA 45 A GLY 46 n 46 GLY 46 A ALA 47 n 47 ALA 47 A PRO 48 n 48 PRO 48 A GLY 49 n 49 GLY 49 A THR 50 n 50 THR 50 A VAL 51 n 51 VAL 51 A ALA 52 n 52 ALA 52 A SER 53 n 53 SER 53 A GLU 54 n 54 GLU 54 A LEU 55 n 55 LEU 55 A LYS 56 n 56 LYS 56 A ALA 57 n 57 ALA 57 A ALA 58 n 58 ALA 58 A SER 59 n 59 SER 59 A MET 60 n 60 MET 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A ASN 63 n 63 ASN 63 A ASP 64 n 64 ASP 64 A LEU 65 n 65 LEU 65 A LEU 66 n 66 LEU 66 A SER 67 n 67 SER 67 A GLU 68 n 68 GLU 68 A ASP 69 n 69 ASP 69 A GLU 70 n 70 GLU 70 A PRO 71 n 71 PRO 71 A SER 72 n 72 SER 72 A PHE 73 n 73 PHE 73 A LYS 74 n 74 LYS 74 A ALA 75 n 75 ALA 75 A LYS 76 n 76 LYS 76 A VAL 77 n 77 VAL 77 A SER 78 n 78 SER 78 A THR 79 n 79 THR 79 A PRO 80 n 80 PRO 80 A GLY 81 n 81 GLY 81 A THR 82 n 82 THR 82 A TYR 83 n 83 TYR 83 A THR 84 n 84 THR 84 A PHE 85 n 85 PHE 85 A TYR 86 n 86 TYR 86 A CYS 87 n 87 CYS 87 A THR 88 n 88 THR 88 A PRO 89 n 89 PRO 89 A HIS 90 n 90 HIS 90 A LYS 91 n 91 LYS 91 A SER 92 n 92 SER 92 A ALA 93 n 93 ALA 93 A ASN 94 n 94 ASN 94 A MET 95 n 95 MET 95 A LYS 96 n 96 LYS 96 A GLY 97 n 97 GLY 97 A THR 98 n 98 THR 98 A LEU 99 n 99 LEU 99 A THR 100 n 100 THR 100 A VAL 101 n 101 VAL 101 A LYS 102 n 102 LYS 102 A author_defined_assembly 1 monomeric A HIS 37 A ND1 HIS 37 1_555 A CU 103 B CU CU 1_555 A CYS 87 A SG CYS 87 1_555 126.1 A HIS 37 A ND1 HIS 37 1_555 A CU 103 B CU CU 1_555 A HIS 90 A ND1 HIS 90 1_555 107.3 A CYS 87 A SG CYS 87 1_555 A CU 103 B CU CU 1_555 A HIS 90 A ND1 HIS 90 1_555 118.3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 3 A O VAL 3 A N GLU 28 A N GLU 28 A O VAL 27 A O VAL 27 A N ALA 75 A N ALA 75 A O ILE 19 A O ILE 19 A N THR 98 A N THR 98 A O GLY 97 A O GLY 97 A N PHE 85 A N PHE 85 1 4.52 0.70 109.00 113.52 A A A CE1 NE2 CD2 HIS HIS HIS 90 90 90 N 1 A GLU 62 -64.32 4.28 0.2550000 0.2340000 0.2340000 1.7 6.0 1016 9809 10 95.0 0 1 2.0 MOLECULAR REPLACEMENT POPLAR PLASTOCYANIN 0.20 1.7 6.0 49 808 1 0 758 0.013 2.78 27.40 1.75 0.3650000 0.3400000 1.78 117 891 8 10 83.0 1.7 30.0 1KDJ 10063 2 0.0500000 1 9.1 9.2 95.0 0.1480000 1.70 1.76 2.45 83.3 model building X-PLOR 3.0 refinement X-PLOR 3.0 data reduction DENZO data scaling SCALEPACK phasing X-PLOR 3.0 OXIDIZED FORM OF PLASTOCYANIN FROM DRYOPTERIS CRASSIRHIZOMA 1 N N 2 N N 3 N N A GLY 49 A GLY 49 HELX_P A ALA 57 A ALA 57 1 1 9 A LYS 91 A LYS 91 HELX_P A ALA 93 A ALA 93 5 2 3 metalc 1.928 A HIS 37 A ND1 HIS 37 1_555 A CU 103 B CU CU 1_555 metalc 2.255 A CYS 87 A SG CYS 87 1_555 A CU 103 B CU CU 1_555 metalc 2.065 A HIS 90 A ND1 HIS 90 1_555 A CU 103 B CU CU 1_555 ELECTRON TRANSFER ELECTRON TRANSFER, PHOTOSYSTEM, PAI-PAI STACKING A TYR 15 A TYR 15 1 A PRO 16 A PRO 16 -8.43 PLAS_DRYCA UNP 1 1 Q7SIB8 1 102 1KDJ 1 102 Q7SIB8 A 1 1 102 3 3 parallel anti-parallel parallel anti-parallel A LYS 2 A LYS 2 A VAL 5 A VAL 5 A VAL 27 A VAL 27 A LEU 31 A LEU 31 A SER 72 A SER 72 A ALA 75 A ALA 75 A SER 18 A SER 18 A VAL 21 A VAL 21 A LYS 96 A LYS 96 A VAL 101 A VAL 101 A GLY 81 A GLY 81 A TYR 86 A TYR 86 BINDING SITE FOR RESIDUE CU A 103 A CU 103 Software 4 A HIS 37 A HIS 37 4 1_555 A CYS 87 A CYS 87 4 1_555 A HIS 90 A HIS 90 4 1_555 A MET 95 A MET 95 4 1_555 169 P 61