0.00
1.195
0.434
2.038
A
C1
G6S
1
HETATM
A
C1
G6S
1
1.00
1
C
0.00
1.152
-0.273
3.386
A
C2
G6S
1
HETATM
A
C2
G6S
1
1.00
1
C
0.00
1.658
0.647
4.487
A
C3
G6S
1
HETATM
A
C3
G6S
1
1.00
1
C
0.00
3.032
1.196
4.125
A
C4
G6S
1
HETATM
A
C4
G6S
1
1.00
1
C
0.00
2.999
1.820
2.734
A
C5
G6S
1
HETATM
A
C5
G6S
1
1.00
1
C
0.00
4.363
2.283
2.268
A
C6
G6S
1
HETATM
A
C6
G6S
1
1.00
1
C
0.00
0.850
-0.481
1.052
A
O1
G6S
1
HETATM
A
O1
G6S
1
1.00
1
O
0.00
-0.181
-0.694
3.653
A
O2
G6S
1
HETATM
A
O2
G6S
1
1.00
1
O
0.00
4.004
0.149
4.131
A
O4
G6S
1
HETATM
A
O4
G6S
1
1.00
1
O
0.00
2.532
0.862
1.772
A
O5
G6S
1
HETATM
A
O5
G6S
1
1.00
1
O
0.00
4.305
2.887
0.977
A
O6
G6S
1
HETATM
A
O6
G6S
1
1.00
1
O
0.00
5.696
3.414
0.386
A
S
G6S
1
HETATM
A
S
G6S
1
1.00
1
S
0.00
6.623
2.305
0.270
A
O7
G6S
1
HETATM
A
O7
G6S
1
1.00
1
O
0.00
6.251
4.416
1.275
A
O8
G6S
1
HETATM
A
O8
G6S
1
1.00
1
O
0.00
5.476
3.998
-0.923
A
O9
G6S
1
HETATM
A
O9
G6S
1
1.00
1
O
0.00
1.737
-0.075
5.717
A
O3
G6S
1
HETATM
A
O3
G6S
1
1.00
1
O
0.00
0.862
0.315
6.723
A
C1
NGS
2
HETATM
A
C1
NGS
1
1.00
1
C
0.00
0.013
-0.888
7.115
A
C2
NGS
2
HETATM
A
C2
NGS
1
1.00
1
C
0.00
-0.864
-0.553
8.312
A
C3
NGS
2
HETATM
A
C3
NGS
1
1.00
1
C
0.00
-0.016
0.000
9.450
A
C4
NGS
2
HETATM
A
C4
NGS
1
1.00
1
C
0.00
0.849
1.151
8.950
A
C5
NGS
2
HETATM
A
C5
NGS
1
1.00
1
C
0.00
1.799
1.670
10.008
A
C6
NGS
2
HETATM
A
C6
NGS
1
1.00
1
C
0.00
-1.548
-1.729
8.748
A
O3
NGS
2
HETATM
A
O3
NGS
1
1.00
1
O
0.00
1.654
0.720
7.841
A
O5
NGS
2
HETATM
A
O5
NGS
1
1.00
1
O
0.00
2.581
2.764
9.528
A
O6
NGS
2
HETATM
A
O6
NGS
1
1.00
1
O
0.00
-0.812
-1.302
5.959
A
N2
NGS
2
HETATM
A
N2
NGS
1
1.00
1
N
0.00
-0.629
-2.562
5.426
A
C7
NGS
2
HETATM
A
C7
NGS
1
1.00
1
C
0.00
0.183
-3.364
5.858
A
O7
NGS
2
HETATM
A
O7
NGS
1
1.00
1
O
0.00
-1.535
-2.850
4.253
A
C8
NGS
2
HETATM
A
C8
NGS
1
1.00
1
C
0.00
4.038
2.920
10.170
A
S
NGS
2
HETATM
A
S
NGS
1
1.00
1
S
0.00
4.814
1.724
9.905
A
O7A
NGS
2
HETATM
A
O7A
NGS
1
1.00
1
O
0.00
3.918
3.109
11.603
A
O8
NGS
2
HETATM
A
O8
NGS
1
1.00
1
O
0.00
4.704
4.067
9.585
A
O9
NGS
2
HETATM
A
O9
NGS
1
1.00
1
O
0.00
-0.850
0.481
10.502
A
O4
NGS
2
HETATM
A
O4
NGS
1
1.00
1
O
0.00
-1.195
-0.434
11.488
A
C1
G6S
3
HETATM
A
C1
G6S
1
1.00
1
C
0.00
-1.152
0.273
12.836
A
C2
G6S
3
HETATM
A
C2
G6S
1
1.00
1
C
0.00
-1.658
-0.647
13.937
A
C3
G6S
3
HETATM
A
C3
G6S
1
1.00
1
C
0.00
-3.032
-1.196
13.575
A
C4
G6S
3
HETATM
A
C4
G6S
1
1.00
1
C
0.00
-2.999
-1.820
12.184
A
C5
G6S
3
HETATM
A
C5
G6S
1
1.00
1
C
0.00
-4.363
-2.283
11.718
A
C6
G6S
3
HETATM
A
C6
G6S
1
1.00
1
C
0.00
0.181
0.694
13.103
A
O2
G6S
3
HETATM
A
O2
G6S
1
1.00
1
O
0.00
-4.004
-0.149
13.581
A
O4
G6S
3
HETATM
A
O4
G6S
1
1.00
1
O
0.00
-2.532
-0.862
11.222
A
O5
G6S
3
HETATM
A
O5
G6S
1
1.00
1
O
0.00
-4.305
-2.887
10.427
A
O6
G6S
3
HETATM
A
O6
G6S
1
1.00
1
O
0.00
-5.696
-3.414
9.836
A
S
G6S
3
HETATM
A
S
G6S
1
1.00
1
S
0.00
-6.623
-2.305
9.720
A
O7
G6S
3
HETATM
A
O7
G6S
1
1.00
1
O
0.00
-6.251
-4.416
10.725
A
O8
G6S
3
HETATM
A
O8
G6S
1
1.00
1
O
0.00
-5.476
-3.998
8.527
A
O9
G6S
3
HETATM
A
O9
G6S
1
1.00
1
O
0.00
-1.737
0.075
15.167
A
O3
G6S
3
HETATM
A
O3
G6S
1
1.00
1
O
0.00
-0.862
-0.315
16.173
A
C1
NGS
4
HETATM
A
C1
NGS
1
1.00
1
C
0.00
-0.013
0.888
16.565
A
C2
NGS
4
HETATM
A
C2
NGS
1
1.00
1
C
0.00
0.864
0.553
17.762
A
C3
NGS
4
HETATM
A
C3
NGS
1
1.00
1
C
0.00
0.016
0.000
18.900
A
C4
NGS
4
HETATM
A
C4
NGS
1
1.00
1
C
0.00
-0.849
-1.151
18.400
A
C5
NGS
4
HETATM
A
C5
NGS
1
1.00
1
C
0.00
-1.799
-1.670
19.458
A
C6
NGS
4
HETATM
A
C6
NGS
1
1.00
1
C
0.00
1.548
1.729
18.198
A
O3
NGS
4
HETATM
A
O3
NGS
1
1.00
1
O
0.00
-1.654
-0.720
17.291
A
O5
NGS
4
HETATM
A
O5
NGS
1
1.00
1
O
0.00
-2.581
-2.764
18.978
A
O6
NGS
4
HETATM
A
O6
NGS
1
1.00
1
O
0.00
0.812
1.302
15.409
A
N2
NGS
4
HETATM
A
N2
NGS
1
1.00
1
N
0.00
0.629
2.562
14.876
A
C7
NGS
4
HETATM
A
C7
NGS
1
1.00
1
C
0.00
-0.183
3.364
15.308
A
O7
NGS
4
HETATM
A
O7
NGS
1
1.00
1
O
0.00
1.535
2.850
13.703
A
C8
NGS
4
HETATM
A
C8
NGS
1
1.00
1
C
0.00
-4.038
-2.920
19.620
A
S
NGS
4
HETATM
A
S
NGS
1
1.00
1
S
0.00
-4.814
-1.724
19.355
A
O7A
NGS
4
HETATM
A
O7A
NGS
1
1.00
1
O
0.00
-3.918
-3.109
21.053
A
O8
NGS
4
HETATM
A
O8
NGS
1
1.00
1
O
0.00
-4.704
-4.067
19.035
A
O9
NGS
4
HETATM
A
O9
NGS
1
1.00
1
O
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Arnott, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C6 H12 O9 S
260.219
n
6-O-sulfo-beta-D-galactopyranose
D-GALACTOSE-6-SULFATE; 6-O-sulfo-beta-D-galactose; 6-O-sulfo-D-galactose; 6-O-sulfo-galactose
D-saccharide, beta linking
C8 H15 N O9 S
301.271
n
2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose
2-(acetylamino)-2-deoxy-6-O-sulfo-beta-D-glucopyranose; N-ACETYL-D-GLUCOSAMINE-6-SULFATE; N-acetyl-6-O-sulfo-beta-D-glucosamine; 2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucose; 2-acetamido-2-deoxy-6-O-sulfo-D-glucose; 2-acetamido-2-deoxy-6-O-sulfo-glucose
D-saccharide, beta linking
N
1
R
C
N
2
R
C
N
3
S
C
N
4
R
C
N
5
R
C
N
6
N
C
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
O
N
11
N
O
N
12
N
S
N
13
N
O
N
14
N
O
N
15
N
O
N
16
N
O
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
R
C
N
30
R
C
N
31
R
C
N
32
S
C
N
33
R
C
N
34
N
C
N
35
N
O
N
36
N
O
N
37
N
O
N
38
N
O
N
39
N
N
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
S
N
44
N
O
N
45
N
O
N
46
N
O
N
47
N
O
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
doub
N
15
N
doub
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
doub
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
88
175
184
10.1016/0022-2836(74)90303-9
4280446
Conformation of keratan sulphate.
1974
UK
J.Chem.Soc.,Perkin Trans.2
JCPKBH
0188
0300-9580
324
Accurate X-Ray Diffraction Analysis of Fibrous Polysaccharides Containing Pyranose Rings. Part 1 the Linked-Atom Approach.
1972
10.2210/pdb1kes/pdb
pdb_00001kes
.100000
0.000000
0.000000
0.000000
.100000
0.000000
0.000000
0.000000
.100000
0.00000
0.00000
0.00000
0.00000
0.00000
18.90000
1068.934
2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose-(1-3)-6-O-sulfo-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose-(1-3)-6-O-sulfo-beta-D-galactopyranose
1
man
branched
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly
pdbx_struct_oper_list
struct_asym
struct_conn
struct_ref
struct_ref_seq
chem_comp
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
Other
Structure summary
Data collection
Database references
Structure summary
1
0
1980-03-28
1
1
2008-03-21
1
2
2011-07-13
2
0
2020-07-29
2
1
2024-02-07
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_pdbx_database_status.process_site
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_value_order
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
GLS
1
n
A
G6S
1
NGS
2
n
A
NGS
2
GLS
3
n
A
G6S
3
NGS
4
n
A
NGS
4
DGalp[6S]b
6-sulfo-b-D-galactopyranose
b-D-Galp6SO3
DGlcpNAc[6S]b
N-acetyl-6-sulfo-b-D-glucopyranose
b-D-GlcpNAc6SO3
Y
BNL
1978-05-23
REL
oligosaccharide
DGlcpNAc[6S]b1-3DGalp[6S]b1-4DGlcpNAc[6S]b1-3DGalp[6S]b1-ROH
1
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,4,3/[a2112h-1b_1-5_6*OSO/3=O/3=O][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O]/1-2-1-2/a3-b1_b4-c1_c3-d1
1
PDB2Glycan
1.1.0
WURCS
[][b-D-Galp6SO3]{[(3+1)][b-D-GlcpNAc6SO3]{[(4+1)][b-D-Galp6SO3]{[(3+1)][b-D-4-deoxy-GlcpNAc6SO3]{}}}}
1
PDB-CARE
LINUCS
C1
O3
NGS
G6S
2
1
1
O1
HO3
sing
C1
O4
G6S
NGS
3
2
1
O1
HO4
sing
C1
O3
NGS
G6S
4
3
1
O1
HO3
sing
n
n
n
n
author_defined_assembly
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
O4
NGS
4
A
O4
NGS
4
1
N
3.0
1
3.0
0
66
66
0
0
refinement
LINKED-ATOM
LEAST-SQUARES MODEL-BUILDING PROCEDURE
refinement
LALS
CONFORMATION OF KERATAN SULPHATE
1
N
N
THE FOUR-RESIDUE CHAIN SEGMENT GIVEN HERE WAS GENERATED
FROM THE PUBLISHED TWO-RESIDUE SEGMENT BY APPLICATION OF
THE TWO-FOLD SCREW AXIS PARALLEL TO Z AND PASSING THROUGH
X=0,Y=0.
covale
1.389
both
sing
A
G6S
1
A
O3
G6S
1_555
A
NGS
2
A
C1
NGS
1_555
covale
1.389
both
sing
A
NGS
2
A
O4
NGS
1_555
A
G6S
3
A
C1
G6S
1_555
covale
1.389
both
sing
A
G6S
3
A
O3
G6S
1_555
A
NGS
4
A
C1
NGS
1_555
TEXTURE OF CONNECTIVE TISSUE
TEXTURE OF CONNECTIVE TISSUE
1
P 1