0.026985 0.015580 0.000000 0.000000 0.031160 0.000000 0.000000 0.000000 0.012208 0.00000 0.00000 0.00000 Liu, J. Cao, W. Lu, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90.00 90.00 120.00 37.057 37.057 81.912 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N O N 95 N H N 96 N H N 97 N N N 98 S C N 99 N C N 100 N O N 101 S C N 102 N C N 103 N C N 104 N C N 105 N O N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N N N 120 S C N 121 N C N 122 N O N 123 N C N 124 N C N 125 N C N 126 N C N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N N N 142 S C N 143 N C N 144 N O N 145 N C N 146 N C N 147 N C N 148 N C N 149 N N N 150 N O N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N S N 173 N C N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C N 191 N O N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N N N 201 S C N 202 N C N 203 N O N 204 R C N 205 N O N 206 N C N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C Y 222 N C Y 223 N C Y 224 N C Y 225 N C Y 226 N C Y 227 N C N 228 N O N 229 N O N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N N N 242 S C N 243 N C N 244 N O N 245 N C N 246 N C N 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing Y 216 N doub Y 217 N sing Y 218 N sing N 219 N sing Y 220 N doub N 221 N sing Y 222 N doub N 223 N sing Y 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N doub N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 318 877 888 10.1016/S0022-2836(02)00138-9 12054830 Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants. 2002 10.2210/pdb1kfm/pdb pdb_00001kfm 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 95 1 CCD 2001-10-12 BRANDEIS - B4 GRAPHITE SINGLE WAVELENGTH M x-ray 1 1.1000 1.0 X25 NSLS 1.1000 SYNCHROTRON NSLS BEAMLINE X25 6073.553 MAJOR OUTER MEMBRANE LIPOPROTEIN M30A, V34A 1 man polymer 18.015 water 19 nat water murein-lipoprotein lpp, murein-lipoprotein lpp no no SSNAKIDQLSSDVQTLNAKVDQLSNDVNAARSDAQAAKDDAARANQRLDNMATKYR SSNAKIDQLSSDVQTLNAKVDQLSNDVNAARSDAQAAKDDAARANQRLDNMATKYR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample 562 Escherichia coli 562 Escherichia coli PLASMID 1 1.78 30.98 VAPOR DIFFUSION, HANGING DROP 6.8 PEG 4000, sodium cacodylate, ammonium acetate, pH 6.8, VAPOR DIFFUSION, HANGING DROP at 293K, VAPOR DIFFUSION, HANGING DROP 293 database_2 software struct_ref_seq_dif chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Derived calculations Version format compliance Database references Refinement description Data collection Refinement description 1 0 2002-06-28 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-10-27 1 4 2023-08-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _software.name _struct_ref_seq_dif.details the wild type protein structure the structure of the same sequence refined at a lower solution Mutant of 1EQ7 RCSB Y RCSB 2001-11-21 REL HOH water 1EQ7 PDB ENTRY 1EQ7 PDB experimental model HOH 101 2 HOH HOH 101 A HOH 102 2 HOH HOH 102 A HOH 103 2 HOH HOH 103 A HOH 104 2 HOH HOH 104 A HOH 105 2 HOH HOH 105 A HOH 106 2 HOH HOH 106 A HOH 107 2 HOH HOH 107 A HOH 108 2 HOH HOH 108 A HOH 109 2 HOH HOH 109 A HOH 110 2 HOH HOH 110 A HOH 111 2 HOH HOH 111 A HOH 112 2 HOH HOH 112 A HOH 113 2 HOH HOH 113 A HOH 114 2 HOH HOH 114 A HOH 115 2 HOH HOH 115 A HOH 116 2 HOH HOH 116 A HOH 117 2 HOH HOH 117 A HOH 118 2 HOH HOH 118 A HOH 119 2 HOH HOH 119 A n 1 1 A SER 2 n 2 SER 2 A ASN 3 n 3 ASN 3 A ALA 4 n 4 ALA 4 A LYS 5 n 5 LYS 5 A ILE 6 n 6 ILE 6 A ASP 7 n 7 ASP 7 A GLN 8 n 8 GLN 8 A LEU 9 n 9 LEU 9 A SER 10 n 10 SER 10 A SER 11 n 11 SER 11 A ASP 12 n 12 ASP 12 A VAL 13 n 13 VAL 13 A GLN 14 n 14 GLN 14 A THR 15 n 15 THR 15 A LEU 16 n 16 LEU 16 A ASN 17 n 17 ASN 17 A ALA 18 n 18 ALA 18 A LYS 19 n 19 LYS 19 A VAL 20 n 20 VAL 20 A ASP 21 n 21 ASP 21 A GLN 22 n 22 GLN 22 A LEU 23 n 23 LEU 23 A SER 24 n 24 SER 24 A ASN 25 n 25 ASN 25 A ASP 26 n 26 ASP 26 A VAL 27 n 27 VAL 27 A ASN 28 n 28 ASN 28 A ALA 29 n 29 ALA 29 A ALA 30 n 30 ALA 30 A ARG 31 n 31 ARG 31 A SER 32 n 32 SER 32 A ASP 33 n 33 ASP 33 A ALA 34 n 34 ALA 34 A GLN 35 n 35 GLN 35 A ALA 36 n 36 ALA 36 A ALA 37 n 37 ALA 37 A LYS 38 n 38 LYS 38 A ASP 39 n 39 ASP 39 A ASP 40 n 40 ASP 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A ARG 43 n 43 ARG 43 A ALA 44 n 44 ALA 44 A ASN 45 n 45 ASN 45 A GLN 46 n 46 GLN 46 A ARG 47 n 47 ARG 47 A LEU 48 n 48 LEU 48 A ASP 49 n 49 ASP 49 A ASN 50 n 50 ASN 50 A MET 51 n 51 MET 51 A n 52 52 A n 53 53 A n 54 54 A n 55 55 A n 56 56 A author_and_software_defined_assembly PISA,PQS 3 trimeric 5690 -43 8040 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_645 -y+1,x-y-1,z crystal symmetry operation 55.5855000000 -32.0923033880 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_765 -x+y+2,-x+1,z crystal symmetry operation 55.5855000000 32.0923033880 0.0000000000 1 A CG ASN 3 A CG ASN 3 1 Y 1 A OD1 ASN 3 A OD1 ASN 3 1 Y 1 A ND2 ASN 3 A ND2 ASN 3 1 Y 1 A CG ASP 12 A CG ASP 12 1 Y 1 A OD1 ASP 12 A OD1 ASP 12 1 Y 1 A OD2 ASP 12 A OD2 ASP 12 1 Y 1 A CG GLN 14 A CG GLN 14 1 Y 1 A CD GLN 14 A CD GLN 14 1 Y 1 A OE1 GLN 14 A OE1 GLN 14 1 Y 1 A NE2 GLN 14 A NE2 GLN 14 1 Y 1 A SER 1 A SER 1 1 Y 1 A ALA 52 A ALA 52 1 Y 1 A THR 53 A THR 53 1 Y 1 A LYS 54 A LYS 54 1 Y 1 A TYR 55 A TYR 55 1 Y 1 A ARG 56 A ARG 56 1 Y PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP 43.6 1.61 4.24 0.00 1.61 0.00 -3.21 0.2880000 0.018 0.2600000 0.2600000 2.00 25.26 254 2761 2761 9.2 97.8 RANDOM 1 RESTRAINED THROUGHOUT 0.0 0.0 MOLECULAR REPLACEMENT PDB ENTRY 1EQ7 Engh & Huber FLAT MODEL 62.1498 0.425897 0.31 0.29 5.00 0.24 0.21 2.00 25.26 19 382 0 0 363 0.004 0.9 16.1 0.63 1.51 1.50 2.38 2.00 2.66 2.00 4.17 2.50 0.3560000 0.074 0.3530000 2.07 25 267 267 10 9.0 97.0 39.0 2.00 50. 1KFM 2761 2761 0.0 0.0 0.0420000 1 17.5 3.8 97.8 0.0970000 2.00 2.07 12.3 267 1 3.9 97.0 phasing AMoRE refinement CNS 1.0 data reduction MADNESS data scaling SCALEPACK Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants 1 N N 2 N N The biological assembly is a trimer generated from the monomer by the three fold axis. A SER 2 A SER 2 HELX_P A ASN 50 A ASN 50 1 1 49 MEMBRANE PROTEIN LIPOPROTEIN, PROTEIN FOLDING, HELIX CAPPING, ALANINE-ZIPPER, MEMBRANE PROTEIN LPP_ECOLI UNP 1 22 P69776 SSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYR 22 77 1KFM 1 56 P69776 A 1 1 56 1 MET engineered mutation ALA 30 1KFM A P69776 UNP 51 30 1 VAL engineered mutation ALA 34 1KFM A P69776 UNP 55 34 146 trigonal H 3