0.026985
0.015580
0.000000
0.000000
0.031160
0.000000
0.000000
0.000000
0.012208
0.00000
0.00000
0.00000
Liu, J.
Cao, W.
Lu, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
9
90.00
90.00
120.00
37.057
37.057
81.912
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
N
N
98
S
C
N
99
N
C
N
100
N
O
N
101
S
C
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
N
N
120
S
C
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
C
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
N
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
N
171
N
C
N
172
N
S
N
173
N
C
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
N
191
N
O
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
N
N
201
S
C
N
202
N
C
N
203
N
O
N
204
R
C
N
205
N
O
N
206
N
C
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
Y
222
N
C
Y
223
N
C
Y
224
N
C
Y
225
N
C
Y
226
N
C
Y
227
N
C
N
228
N
O
N
229
N
O
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
Y
216
N
doub
Y
217
N
sing
Y
218
N
sing
N
219
N
sing
Y
220
N
doub
N
221
N
sing
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
318
877
888
10.1016/S0022-2836(02)00138-9
12054830
Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants.
2002
10.2210/pdb1kfm/pdb
pdb_00001kfm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
95
1
CCD
2001-10-12
BRANDEIS - B4
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.1000
1.0
X25
NSLS
1.1000
SYNCHROTRON
NSLS BEAMLINE X25
6073.553
MAJOR OUTER MEMBRANE LIPOPROTEIN
M30A, V34A
1
man
polymer
18.015
water
19
nat
water
murein-lipoprotein lpp, murein-lipoprotein lpp
no
no
SSNAKIDQLSSDVQTLNAKVDQLSNDVNAARSDAQAAKDDAARANQRLDNMATKYR
SSNAKIDQLSSDVQTLNAKVDQLSNDVNAARSDAQAAKDDAARANQRLDNMATKYR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
PLASMID
1
1.78
30.98
VAPOR DIFFUSION, HANGING DROP
6.8
PEG 4000, sodium cacodylate, ammonium acetate, pH 6.8, VAPOR DIFFUSION,
HANGING DROP at 293K, VAPOR DIFFUSION, HANGING DROP
293
database_2
software
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Database references
Refinement description
Data collection
Refinement description
1
0
2002-06-28
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-10-27
1
4
2023-08-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_software.name
_struct_ref_seq_dif.details
the wild type protein structure
the structure of the same sequence refined at a lower solution
Mutant of 1EQ7
RCSB
Y
RCSB
2001-11-21
REL
HOH
water
1EQ7
PDB ENTRY 1EQ7
PDB
experimental model
HOH
101
2
HOH
HOH
101
A
HOH
102
2
HOH
HOH
102
A
HOH
103
2
HOH
HOH
103
A
HOH
104
2
HOH
HOH
104
A
HOH
105
2
HOH
HOH
105
A
HOH
106
2
HOH
HOH
106
A
HOH
107
2
HOH
HOH
107
A
HOH
108
2
HOH
HOH
108
A
HOH
109
2
HOH
HOH
109
A
HOH
110
2
HOH
HOH
110
A
HOH
111
2
HOH
HOH
111
A
HOH
112
2
HOH
HOH
112
A
HOH
113
2
HOH
HOH
113
A
HOH
114
2
HOH
HOH
114
A
HOH
115
2
HOH
HOH
115
A
HOH
116
2
HOH
HOH
116
A
HOH
117
2
HOH
HOH
117
A
HOH
118
2
HOH
HOH
118
A
HOH
119
2
HOH
HOH
119
A
n
1
1
A
SER
2
n
2
SER
2
A
ASN
3
n
3
ASN
3
A
ALA
4
n
4
ALA
4
A
LYS
5
n
5
LYS
5
A
ILE
6
n
6
ILE
6
A
ASP
7
n
7
ASP
7
A
GLN
8
n
8
GLN
8
A
LEU
9
n
9
LEU
9
A
SER
10
n
10
SER
10
A
SER
11
n
11
SER
11
A
ASP
12
n
12
ASP
12
A
VAL
13
n
13
VAL
13
A
GLN
14
n
14
GLN
14
A
THR
15
n
15
THR
15
A
LEU
16
n
16
LEU
16
A
ASN
17
n
17
ASN
17
A
ALA
18
n
18
ALA
18
A
LYS
19
n
19
LYS
19
A
VAL
20
n
20
VAL
20
A
ASP
21
n
21
ASP
21
A
GLN
22
n
22
GLN
22
A
LEU
23
n
23
LEU
23
A
SER
24
n
24
SER
24
A
ASN
25
n
25
ASN
25
A
ASP
26
n
26
ASP
26
A
VAL
27
n
27
VAL
27
A
ASN
28
n
28
ASN
28
A
ALA
29
n
29
ALA
29
A
ALA
30
n
30
ALA
30
A
ARG
31
n
31
ARG
31
A
SER
32
n
32
SER
32
A
ASP
33
n
33
ASP
33
A
ALA
34
n
34
ALA
34
A
GLN
35
n
35
GLN
35
A
ALA
36
n
36
ALA
36
A
ALA
37
n
37
ALA
37
A
LYS
38
n
38
LYS
38
A
ASP
39
n
39
ASP
39
A
ASP
40
n
40
ASP
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
ARG
43
n
43
ARG
43
A
ALA
44
n
44
ALA
44
A
ASN
45
n
45
ASN
45
A
GLN
46
n
46
GLN
46
A
ARG
47
n
47
ARG
47
A
LEU
48
n
48
LEU
48
A
ASP
49
n
49
ASP
49
A
ASN
50
n
50
ASN
50
A
MET
51
n
51
MET
51
A
n
52
52
A
n
53
53
A
n
54
54
A
n
55
55
A
n
56
56
A
author_and_software_defined_assembly
PISA,PQS
3
trimeric
5690
-43
8040
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_645
-y+1,x-y-1,z
crystal symmetry operation
55.5855000000
-32.0923033880
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_765
-x+y+2,-x+1,z
crystal symmetry operation
55.5855000000
32.0923033880
0.0000000000
1
A
CG
ASN
3
A
CG
ASN
3
1
Y
1
A
OD1
ASN
3
A
OD1
ASN
3
1
Y
1
A
ND2
ASN
3
A
ND2
ASN
3
1
Y
1
A
CG
ASP
12
A
CG
ASP
12
1
Y
1
A
OD1
ASP
12
A
OD1
ASP
12
1
Y
1
A
OD2
ASP
12
A
OD2
ASP
12
1
Y
1
A
CG
GLN
14
A
CG
GLN
14
1
Y
1
A
CD
GLN
14
A
CD
GLN
14
1
Y
1
A
OE1
GLN
14
A
OE1
GLN
14
1
Y
1
A
NE2
GLN
14
A
NE2
GLN
14
1
Y
1
A
SER
1
A
SER
1
1
Y
1
A
ALA
52
A
ALA
52
1
Y
1
A
THR
53
A
THR
53
1
Y
1
A
LYS
54
A
LYS
54
1
Y
1
A
TYR
55
A
TYR
55
1
Y
1
A
ARG
56
A
ARG
56
1
Y
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
43.6
1.61
4.24
0.00
1.61
0.00
-3.21
0.2880000
0.018
0.2600000
0.2600000
2.00
25.26
254
2761
2761
9.2
97.8
RANDOM
1
RESTRAINED
THROUGHOUT
0.0
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1EQ7
Engh & Huber
FLAT MODEL
62.1498
0.425897
0.31
0.29
5.00
0.24
0.21
2.00
25.26
19
382
0
0
363
0.004
0.9
16.1
0.63
1.51
1.50
2.38
2.00
2.66
2.00
4.17
2.50
0.3560000
0.074
0.3530000
2.07
25
267
267
10
9.0
97.0
39.0
2.00
50.
1KFM
2761
2761
0.0
0.0
0.0420000
1
17.5
3.8
97.8
0.0970000
2.00
2.07
12.3
267
1
3.9
97.0
phasing
AMoRE
refinement
CNS
1.0
data reduction
MADNESS
data scaling
SCALEPACK
Core side-chain packing and backbone conformation in Lpp-56 coiled-coil mutants
1
N
N
2
N
N
The biological assembly is a trimer generated from the monomer by the
three fold axis.
A
SER
2
A
SER
2
HELX_P
A
ASN
50
A
ASN
50
1
1
49
MEMBRANE PROTEIN
LIPOPROTEIN, PROTEIN FOLDING, HELIX CAPPING, ALANINE-ZIPPER, MEMBRANE PROTEIN
LPP_ECOLI
UNP
1
22
P69776
SSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYR
22
77
1KFM
1
56
P69776
A
1
1
56
1
MET
engineered mutation
ALA
30
1KFM
A
P69776
UNP
51
30
1
VAL
engineered mutation
ALA
34
1KFM
A
P69776
UNP
55
34
146
trigonal
H 3