1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Van't Slot, K.A.
Van den Burg, H.A.
Kloks, C.P.
Hilbers, C.W.
Knogge, W.
Papavoine, C.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
278
45730
45736
10.1074/jbc.M308304200
12944393
Solution Structure of the Plant Disease Resistance-triggering Protein NIP1 from the Fungus Rhynchosporium secalis Shows a Novel beta-Sheet Fold.
2003
10.2210/pdb1kg1/pdb
pdb_00001kg1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
6451.364
Necrosis Inducing Protein 1
1
man
polymer
NIP1
no
no
DRCRYTLCCDGALKAVSACLHESESCLVPGDCCRGKSRLTLCSYGEGGNGFQCPTGYRQC
DRCRYTLCCDGALKAVSACLHESESCLVPGDCCRGKSRLTLCSYGEGGNGFQCPTGYRQC
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
leaf blotch of barley
Rhynchosporium
Escherichia
sample
Nip1
38038
Rhynchosporium secalis
562
Escherichia coli
AD494
Plasmid
pQE30
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2003-11-11
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
5199 contains NIP1 WITH CHEMICAL SHIFT VALUES AND TORSION ANGLES.
RCSB
Y
PDBJ
2001-11-26
REL
REL
Disulfide bond pattern was determined independently
target function
100
25
3D_15N-separated_NOESY
HNHA
HNHB
2D NOESY
2D NOESY
DQF-COSY
HMQC-NOESY-HMQC
hmqc-noesy-hmqc
2D HMQC-J
DQF-COSY
6.0
ambient
298
K
The structures are besed on a total of 785 restraints: 740 NOE restraints and 45, 40 torsion angle restraints and 5 disulfide bonds
torsion angle dynamics
1
closest to the average
2.0mM NIP1, 97% 15N incorporation
H2O
2.0mM NIP1, unlabeled
H2O
2.0mM NIP1, unlabeled
D2O
Guntert
structure solution
DYANA
1.5
Delaglio
processing
NMRPipe
version 1.8 Rev 2001.030.21.27
Bartels
data analysis
XEASY
1.3.13
Guntert
refinement
DYANA
1.5
600
Bruker
DMX
500
Varian
INOVA
800
Varian
INOVA
ASP
1
n
1
ASP
1
A
ARG
2
n
2
ARG
2
A
CYS
3
n
3
CYS
3
A
ARG
4
n
4
ARG
4
A
TYR
5
n
5
TYR
5
A
THR
6
n
6
THR
6
A
LEU
7
n
7
LEU
7
A
CYS
8
n
8
CYS
8
A
CYS
9
n
9
CYS
9
A
ASP
10
n
10
ASP
10
A
GLY
11
n
11
GLY
11
A
ALA
12
n
12
ALA
12
A
LEU
13
n
13
LEU
13
A
LYS
14
n
14
LYS
14
A
ALA
15
n
15
ALA
15
A
VAL
16
n
16
VAL
16
A
SER
17
n
17
SER
17
A
ALA
18
n
18
ALA
18
A
CYS
19
n
19
CYS
19
A
LEU
20
n
20
LEU
20
A
HIS
21
n
21
HIS
21
A
GLU
22
n
22
GLU
22
A
SER
23
n
23
SER
23
A
GLU
24
n
24
GLU
24
A
SER
25
n
25
SER
25
A
CYS
26
n
26
CYS
26
A
LEU
27
n
27
LEU
27
A
VAL
28
n
28
VAL
28
A
PRO
29
n
29
PRO
29
A
GLY
30
n
30
GLY
30
A
ASP
31
n
31
ASP
31
A
CYS
32
n
32
CYS
32
A
CYS
33
n
33
CYS
33
A
ARG
34
n
34
ARG
34
A
GLY
35
n
35
GLY
35
A
LYS
36
n
36
LYS
36
A
SER
37
n
37
SER
37
A
ARG
38
n
38
ARG
38
A
LEU
39
n
39
LEU
39
A
THR
40
n
40
THR
40
A
LEU
41
n
41
LEU
41
A
CYS
42
n
42
CYS
42
A
SER
43
n
43
SER
43
A
TYR
44
n
44
TYR
44
A
GLY
45
n
45
GLY
45
A
GLU
46
n
46
GLU
46
A
GLY
47
n
47
GLY
47
A
GLY
48
n
48
GLY
48
A
ASN
49
n
49
ASN
49
A
GLY
50
n
50
GLY
50
A
PHE
51
n
51
PHE
51
A
GLN
52
n
52
GLN
52
A
CYS
53
n
53
CYS
53
A
PRO
54
n
54
PRO
54
A
THR
55
n
55
THR
55
A
GLY
56
n
56
GLY
56
A
TYR
57
n
57
TYR
57
A
ARG
58
n
58
ARG
58
A
GLN
59
n
59
GLN
59
A
CYS
60
n
60
CYS
60
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
6
A
N
THR
6
A
O
ALA
18
A
O
ALA
18
A
O
SER
37
A
O
SER
37
A
N
ARG
34
A
N
ARG
34
A
N
CYS
33
A
N
CYS
33
A
O
ARG
58
A
O
ARG
58
3
A
A
O
HE
TYR
ARG
57
58
1.50
3
A
A
O
H
SER
GLN
43
52
1.57
4
A
A
O
H
SER
GLN
43
52
1.59
5
A
A
HG
O
SER
GLN
43
52
1.49
5
A
A
O
H
SER
GLN
43
52
1.55
12
A
A
H
O
ASP
LYS
10
14
1.59
16
A
A
H
O
GLY
GLY
45
50
1.59
17
A
A
O
H
HIS
GLU
21
24
1.59
1
A
TYR
5
-48.20
109.95
1
A
ALA
12
-150.77
79.01
1
A
LEU
13
173.19
-84.02
1
A
LYS
14
174.59
132.58
1
A
LEU
27
-67.12
93.07
1
A
GLU
46
-38.68
125.68
2
A
CYS
3
59.69
158.70
2
A
TYR
5
-38.84
99.98
2
A
ALA
12
-151.77
81.10
2
A
LEU
13
176.34
-94.11
2
A
LYS
14
-175.40
121.97
2
A
LEU
27
-64.81
77.36
2
A
PRO
29
-75.05
-168.09
2
A
LYS
36
-148.42
29.19
2
A
GLU
46
59.64
151.05
2
A
GLN
59
-35.14
125.18
3
A
CYS
3
86.76
137.55
3
A
TYR
5
-36.08
98.10
3
A
ALA
12
-150.54
74.28
3
A
LEU
13
177.56
-92.72
3
A
LYS
14
179.50
117.17
3
A
ALA
15
-36.46
125.66
3
A
PRO
29
-75.10
-169.53
3
A
GLN
52
-119.58
-169.39
4
A
CYS
3
-43.84
161.40
4
A
ARG
4
-101.77
79.55
4
A
ALA
12
-150.78
72.85
4
A
LEU
13
175.02
-89.58
4
A
LYS
14
177.70
133.07
4
A
ALA
15
-39.32
129.68
4
A
LEU
27
-60.46
89.85
4
A
LYS
36
-145.01
27.89
4
A
ASN
49
-150.32
87.96
4
A
GLN
59
-37.62
126.83
5
A
CYS
3
178.82
153.32
5
A
ALA
12
-152.90
72.32
5
A
LEU
13
-178.86
-99.53
5
A
LEU
27
-60.84
87.58
5
A
PRO
29
-75.02
-169.15
5
A
GLU
46
-36.63
139.59
5
A
GLN
59
-35.78
140.56
6
A
CYS
3
76.72
157.83
6
A
ALA
12
-89.74
44.72
6
A
LEU
13
31.90
54.28
6
A
LYS
14
-152.12
78.90
6
A
LEU
27
-60.28
90.54
6
A
SER
43
-160.50
116.01
6
A
ASN
49
-113.40
79.85
6
A
GLN
59
-38.69
143.62
7
A
ALA
12
-152.73
76.74
7
A
LEU
13
177.60
-95.23
7
A
LEU
27
-62.71
79.27
7
A
LYS
36
-148.47
29.72
7
A
SER
43
-160.62
103.31
7
A
ASN
49
-114.75
62.95
7
A
GLN
59
-35.48
124.08
8
A
TYR
5
-36.49
105.34
8
A
ASP
10
-96.03
30.59
8
A
ALA
12
-122.28
-135.07
8
A
GLU
46
59.16
152.64
8
A
GLN
59
-37.24
141.68
9
A
TYR
5
-36.27
97.08
9
A
ALA
12
-150.00
47.49
9
A
LEU
13
157.04
-83.04
9
A
LEU
27
-61.94
82.17
9
A
ASN
49
-89.54
43.90
9
A
PHE
51
-43.31
150.24
9
A
GLN
59
-36.72
126.61
10
A
ARG
2
167.51
163.75
10
A
ALA
12
-152.71
68.66
10
A
LEU
13
-179.97
-96.53
10
A
LEU
27
-65.54
92.06
10
A
LYS
36
-140.59
24.28
10
A
GLN
59
-37.18
132.26
11
A
ARG
2
-39.48
159.97
11
A
TYR
5
-47.77
107.14
11
A
ALA
12
-117.08
-131.48
11
A
PRO
29
-74.94
-168.28
11
A
SER
43
-160.32
95.56
11
A
GLU
46
52.29
109.22
11
A
ASN
49
-150.85
73.55
11
A
GLN
52
-150.52
75.47
11
A
CYS
53
-47.60
151.48
11
A
GLN
59
-34.84
142.23
12
A
ARG
2
58.13
158.96
12
A
ARG
4
-88.46
-144.15
12
A
TYR
5
-177.68
114.33
12
A
ALA
12
-141.54
44.35
12
A
LEU
13
79.57
-53.91
12
A
LYS
14
-38.33
144.00
12
A
LEU
27
-65.90
89.37
12
A
PRO
29
-75.07
-169.57
12
A
SER
43
-155.00
88.99
12
A
GLN
59
-36.75
126.05
13
A
CYS
3
61.66
165.12
13
A
ARG
4
-106.30
61.72
13
A
TYR
5
-35.81
125.88
13
A
ALA
12
-150.95
83.59
13
A
LEU
13
165.69
-88.34
13
A
LYS
14
179.10
133.91
13
A
SER
23
-78.82
-77.85
13
A
GLU
24
-35.96
153.10
14
A
ARG
4
-89.45
-146.23
14
A
TYR
5
-178.15
106.06
14
A
ALA
12
-150.60
70.28
14
A
LEU
13
177.45
-93.38
14
A
LYS
14
-178.06
132.88
14
A
LEU
27
-68.90
76.66
14
A
PRO
29
-75.00
-169.46
14
A
PHE
51
-36.62
151.37
14
A
GLN
59
-36.79
140.19
15
A
ARG
2
57.70
158.40
15
A
CYS
3
164.13
168.57
15
A
ASP
10
-100.14
42.32
15
A
ALA
12
-123.85
-133.96
15
A
LYS
14
-50.30
101.04
15
A
LEU
27
-58.86
84.37
15
A
SER
43
-161.51
99.53
15
A
CYS
53
-45.58
153.97
15
A
GLN
59
-39.32
127.69
16
A
CYS
3
65.84
135.84
16
A
ALA
12
-151.73
88.37
16
A
LEU
13
169.01
-89.13
16
A
LYS
14
179.60
123.90
16
A
ALA
15
-37.04
119.21
16
A
SER
23
-79.55
-78.06
16
A
GLU
24
-38.36
151.23
16
A
LEU
27
-69.10
91.13
16
A
PRO
29
-74.88
-168.61
16
A
ASN
49
-146.44
55.90
16
A
GLN
59
-37.59
127.27
17
A
CYS
3
80.32
157.98
17
A
ALA
12
-150.60
71.17
17
A
LEU
13
173.35
-91.04
17
A
GLU
24
-33.77
142.10
17
A
GLU
46
-37.35
133.65
17
A
GLN
59
-37.12
126.50
18
A
ARG
4
-101.32
66.54
18
A
TYR
5
-36.91
118.53
18
A
LEU
13
153.85
-24.67
18
A
LYS
14
96.84
135.40
18
A
ALA
15
-37.56
117.66
18
A
GLU
46
-38.42
154.05
18
A
ASN
49
-142.30
-154.89
18
A
GLN
59
-36.95
137.43
19
A
CYS
3
173.94
150.75
19
A
ALA
12
-151.98
60.87
19
A
LEU
13
179.92
-100.05
19
A
LEU
27
-64.93
75.31
19
A
PRO
29
-75.01
-169.52
19
A
SER
43
-160.71
115.36
20
A
ARG
4
-103.86
77.78
20
A
ALA
12
-127.49
-126.87
20
A
LYS
14
177.60
176.63
20
A
LEU
27
-63.49
88.47
20
A
PRO
29
-75.03
-167.80
20
A
SER
43
-160.16
92.88
20
A
GLU
46
59.60
151.11
20
A
ASN
49
-135.60
-154.22
20
A
GLN
59
-35.39
136.01
21
A
CYS
3
162.85
147.79
21
A
ARG
4
-102.42
69.67
21
A
ALA
12
-103.13
-129.87
21
A
LYS
14
172.03
-169.37
21
A
LYS
36
-140.60
24.43
21
A
GLN
59
-37.56
130.60
22
A
CYS
3
63.22
158.92
22
A
ALA
12
-145.16
45.92
22
A
LEU
13
71.09
-54.48
22
A
LYS
14
-38.46
105.39
22
A
LEU
27
-66.91
93.20
22
A
PRO
29
-75.06
-169.60
22
A
LYS
36
-145.20
26.07
22
A
SER
43
-160.13
109.77
22
A
ASN
49
-90.24
45.43
22
A
GLN
59
-37.34
131.42
23
A
CYS
3
-41.54
157.78
23
A
ALA
12
-152.85
67.61
23
A
LEU
13
-178.90
-96.39
23
A
LEU
27
-63.34
93.65
23
A
PRO
29
-74.95
-168.50
23
A
LYS
36
-141.09
24.09
23
A
ASN
49
-91.18
39.38
23
A
GLN
52
-141.83
-157.67
23
A
CYS
53
179.77
171.85
23
A
GLN
59
-33.70
137.45
24
A
ARG
2
-47.76
169.17
24
A
CYS
3
-41.58
158.39
24
A
TYR
5
-36.26
122.27
24
A
ALA
12
-151.39
84.30
24
A
LEU
13
173.33
-91.75
24
A
LYS
14
-177.10
122.56
24
A
ALA
15
-39.09
117.76
24
A
PRO
29
-75.04
-169.70
24
A
LYS
36
-146.27
27.91
24
A
GLN
59
-36.83
128.71
25
A
CYS
3
68.82
154.33
25
A
ALA
12
-119.39
-131.54
25
A
LEU
27
-65.78
73.99
25
A
SER
43
-160.32
115.86
25
A
GLU
46
59.84
10.50
25
A
GLN
59
-36.24
141.58
NMR structure of the NIP1 elicitor protein from Rhynchosporium secalis
1
N
N
disulf
1.983
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
19
A
SG
CYS
19
1_555
disulf
1.963
A
CYS
8
A
SG
CYS
8
1_555
A
CYS
26
A
SG
CYS
26
1_555
disulf
1.959
A
CYS
9
A
SG
CYS
9
1_555
A
CYS
42
A
SG
CYS
42
1_555
disulf
2.107
A
CYS
32
A
SG
CYS
32
1_555
A
CYS
53
A
SG
CYS
53
1_555
disulf
1.982
A
CYS
33
A
SG
CYS
33
1_555
A
CYS
60
A
SG
CYS
60
1_555
TOXIN
antiparalel beta sheets, TOXIN
Q02039_RHYSE
UNP
1
Q02039
MKFLVLPLSLAFLQIGLVFSTPDRCRYTLCCDGALKAVSACLHESESCLVPGDCCRGKSRLTLCSYGEGGNGFQCPTGYR
QC
23
82
1KG1
1
60
Q02039
A
1
1
60
2
3
anti-parallel
anti-parallel
anti-parallel
A
ARG
4
A
ARG
4
A
CYS
8
A
CYS
8
A
VAL
16
A
VAL
16
A
LEU
20
A
LEU
20
A
SER
37
A
SER
37
A
LEU
41
A
LEU
41
A
GLY
30
A
GLY
30
A
ARG
34
A
ARG
34
A
ARG
58
A
ARG
58
A
GLN
59
A
GLN
59