0.011841 0.000000 0.007775 0.000000 0.019920 0.000000 0.000000 0.000000 0.016969 0.000000 0.000000 0.000000 Gilboa, R. Kilshtein, A. Zharkov, D.O. Kycia, J.H. Gerchman, S.E. Grollman, A.P. Shoham, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 123.29 90.00 84.450 50.200 70.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking Fe4 S4 351.640 IRON/SULFUR CLUSTER non-polymer O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N C N 138 N O N 139 N C N 140 N O N 141 N C N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C Y 156 N C Y 157 N N Y 158 N C Y 159 N C Y 160 N N N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N O N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 S C N 180 N C N 181 N C N 182 N C N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N N N 198 S C N 199 N C N 200 N O N 201 N C N 202 N C N 203 N C N 204 N C N 205 N O N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N N N 220 S C N 221 N C N 222 N O N 223 N C N 224 N C N 225 N C N 226 N C N 227 N N N 228 N O N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C N 249 N C N 250 N S N 251 N C N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C Y 269 N C Y 270 N C Y 271 N C Y 272 N C Y 273 N C Y 274 N C N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N C N 293 N C N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C N 309 N O N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N FE N 319 N FE N 320 N FE N 321 N FE N 322 N S N 323 N S N 324 N S N 325 N S N 326 N S N 327 N O N 328 N O N 329 N O N 330 N O N 331 N N N 332 S C N 333 N C N 334 N O N 335 R C N 336 N O N 337 N C N 338 N O N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N N Y 357 N C Y 358 N C Y 359 N C Y 360 N C Y 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N N N 376 S C N 377 N C N 378 N O N 379 N C Y 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C N 386 N O N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C N 404 N C N 405 N C N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing Y 153 N sing Y 154 N doub Y 155 N doub N 156 N sing Y 157 N sing N 158 N sing Y 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing Y 261 N doub Y 262 N sing Y 263 N sing N 264 N sing Y 265 N doub N 266 N sing Y 267 N doub N 268 N sing Y 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing Y 346 N doub Y 347 N sing Y 348 N sing N 349 N sing Y 350 N doub Y 351 N sing Y 352 N sing N 353 N sing Y 354 N sing Y 355 N doub N 356 N sing Y 357 N doub N 358 N sing Y 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing Y 374 N doub Y 375 N sing Y 376 N sing N 377 N sing Y 378 N doub N 379 N sing Y 380 N doub N 381 N sing Y 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing To be Published 0353 Analysis of the E.coli MutY DNA glycosylase structure and function by site-directed mutagenesis US Biochemistry BICHAW 0033 0006-2960 39 14768 14778 10.1021/bi001538k Role for Lysine 142 in the excision of adenine from A:G mispairs by MutY DNA glycosylase of Escherichia coli. 2000 10.2210/pdb1kg3/pdb pdb_00001kg3 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100 1 CCD 1999-10-18 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.100 1.0 X26C NSLS 1.100 SYNCHROTRON NSLS BEAMLINE X26C 25048.990 A/G-specific adenine glycosylase 3.2.2.- Catalytic domain 1 man polymer 96.063 SULFATE ION 3 syn non-polymer 351.640 IRON/SULFUR CLUSTER 1 syn non-polymer 92.094 GLYCEROL 3 syn non-polymer 18.015 water 212 nat water no no MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGL GYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEV ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKPK MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGL GYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEV ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKPK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample mutY 562 Escherichia coli 562 Escherichia coli B834(DE3) Plasmid pET13a 1 1.81 50.64 VAPOR DIFFUSION, HANGING DROP 8.0 Lithium sulfate, HEPES, Sodium chloride, Magnesium sulfate. Different crystallization concentration in comparison to 1kg2., pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 288K 288 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Non-polymer description Version format compliance Data collection Refinement description Data collection Database references Derived calculations Refinement description 1 0 2002-11-26 1 1 2008-04-27 1 2 2011-07-13 1 3 2019-07-24 1 4 2023-08-16 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal structure of the core fragment of MutY from E.coli at 1.20A resolution (different crystallization concentration in comparison to 1kg3). Crystal structure of the K142A mutant of E. coli MutY (core fragment) Crystal structure of the K142Q mutant of E.coli MutY (core fragment) Crystal structure of the K142R mutant of E.coli MutY (core fragment) Crystal Structure of the E161A mutant of E.coli MutY (core fragment) RCSB Y RCSB 2001-11-26 REL SO4 SULFATE ION SF4 IRON/SULFUR CLUSTER GOL GLYCEROL HOH water 1KG2 PDB experimental model SO4 301 2 SO4 SO4 301 A SO4 302 2 SO4 SO4 302 A SO4 303 2 SO4 SO4 303 A FS4 300 3 SF4 SF4 300 A GOL 310 4 GOL GOL 310 A GOL 311 4 GOL GOL 311 A GOL 312 4 GOL GOL 312 A HOH 501 5 HOH HOH 501 A HOH 502 5 HOH HOH 502 A HOH 503 5 HOH HOH 503 A HOH 504 5 HOH HOH 504 A HOH 505 5 HOH HOH 505 A HOH 506 5 HOH HOH 506 A HOH 507 5 HOH HOH 507 A HOH 508 5 HOH HOH 508 A HOH 509 5 HOH HOH 509 A HOH 510 5 HOH HOH 510 A HOH 511 5 HOH HOH 511 A HOH 512 5 HOH HOH 512 A HOH 513 5 HOH HOH 513 A HOH 514 5 HOH HOH 514 A HOH 515 5 HOH HOH 515 A HOH 516 5 HOH HOH 516 A HOH 517 5 HOH HOH 517 A HOH 518 5 HOH HOH 518 A HOH 519 5 HOH HOH 519 A HOH 520 5 HOH HOH 520 A HOH 521 5 HOH HOH 521 A HOH 522 5 HOH HOH 522 A HOH 523 5 HOH HOH 523 A HOH 524 5 HOH HOH 524 A HOH 525 5 HOH HOH 525 A HOH 526 5 HOH HOH 526 A HOH 527 5 HOH HOH 527 A HOH 528 5 HOH HOH 528 A HOH 529 5 HOH HOH 529 A HOH 530 5 HOH HOH 530 A HOH 531 5 HOH HOH 531 A HOH 532 5 HOH HOH 532 A HOH 533 5 HOH HOH 533 A HOH 534 5 HOH HOH 534 A HOH 535 5 HOH HOH 535 A HOH 536 5 HOH HOH 536 A HOH 537 5 HOH HOH 537 A HOH 538 5 HOH HOH 538 A HOH 539 5 HOH HOH 539 A HOH 540 5 HOH HOH 540 A HOH 541 5 HOH HOH 541 A HOH 542 5 HOH HOH 542 A HOH 543 5 HOH HOH 543 A HOH 544 5 HOH HOH 544 A HOH 545 5 HOH HOH 545 A HOH 546 5 HOH HOH 546 A HOH 547 5 HOH HOH 547 A HOH 548 5 HOH HOH 548 A HOH 549 5 HOH HOH 549 A HOH 550 5 HOH HOH 550 A HOH 551 5 HOH HOH 551 A HOH 552 5 HOH HOH 552 A HOH 553 5 HOH HOH 553 A HOH 554 5 HOH HOH 554 A HOH 555 5 HOH HOH 555 A HOH 556 5 HOH HOH 556 A HOH 557 5 HOH HOH 557 A HOH 558 5 HOH HOH 558 A HOH 559 5 HOH HOH 559 A HOH 560 5 HOH HOH 560 A HOH 561 5 HOH HOH 561 A HOH 562 5 HOH HOH 562 A HOH 563 5 HOH HOH 563 A HOH 564 5 HOH HOH 564 A HOH 565 5 HOH HOH 565 A HOH 566 5 HOH HOH 566 A HOH 567 5 HOH HOH 567 A HOH 568 5 HOH HOH 568 A HOH 569 5 HOH HOH 569 A HOH 570 5 HOH HOH 570 A HOH 571 5 HOH HOH 571 A HOH 572 5 HOH HOH 572 A HOH 573 5 HOH HOH 573 A HOH 574 5 HOH HOH 574 A HOH 575 5 HOH HOH 575 A HOH 576 5 HOH HOH 576 A HOH 577 5 HOH HOH 577 A HOH 578 5 HOH HOH 578 A HOH 579 5 HOH HOH 579 A HOH 580 5 HOH HOH 580 A HOH 581 5 HOH HOH 581 A HOH 582 5 HOH HOH 582 A HOH 583 5 HOH HOH 583 A HOH 584 5 HOH HOH 584 A HOH 585 5 HOH HOH 585 A HOH 586 5 HOH HOH 586 A HOH 587 5 HOH HOH 587 A HOH 588 5 HOH HOH 588 A HOH 589 5 HOH HOH 589 A HOH 590 5 HOH HOH 590 A HOH 591 5 HOH HOH 591 A HOH 592 5 HOH HOH 592 A HOH 593 5 HOH HOH 593 A HOH 594 5 HOH HOH 594 A HOH 595 5 HOH HOH 595 A HOH 596 5 HOH HOH 596 A HOH 597 5 HOH HOH 597 A HOH 598 5 HOH HOH 598 A HOH 599 5 HOH HOH 599 A HOH 600 5 HOH HOH 600 A HOH 601 5 HOH HOH 601 A HOH 602 5 HOH HOH 602 A HOH 603 5 HOH HOH 603 A HOH 604 5 HOH HOH 604 A HOH 605 5 HOH HOH 605 A HOH 606 5 HOH HOH 606 A HOH 607 5 HOH HOH 607 A HOH 608 5 HOH HOH 608 A HOH 609 5 HOH HOH 609 A HOH 610 5 HOH HOH 610 A HOH 611 5 HOH HOH 611 A HOH 612 5 HOH HOH 612 A HOH 613 5 HOH HOH 613 A HOH 614 5 HOH HOH 614 A HOH 615 5 HOH HOH 615 A HOH 616 5 HOH HOH 616 A HOH 617 5 HOH HOH 617 A HOH 618 5 HOH HOH 618 A HOH 619 5 HOH HOH 619 A HOH 620 5 HOH HOH 620 A HOH 621 5 HOH HOH 621 A HOH 622 5 HOH HOH 622 A HOH 623 5 HOH HOH 623 A HOH 624 5 HOH HOH 624 A HOH 625 5 HOH HOH 625 A HOH 626 5 HOH HOH 626 A HOH 627 5 HOH HOH 627 A HOH 628 5 HOH HOH 628 A HOH 629 5 HOH HOH 629 A HOH 630 5 HOH HOH 630 A HOH 631 5 HOH HOH 631 A HOH 632 5 HOH HOH 632 A HOH 633 5 HOH HOH 633 A HOH 634 5 HOH HOH 634 A HOH 635 5 HOH HOH 635 A HOH 636 5 HOH HOH 636 A HOH 637 5 HOH HOH 637 A HOH 638 5 HOH HOH 638 A HOH 639 5 HOH HOH 639 A HOH 640 5 HOH HOH 640 A HOH 641 5 HOH HOH 641 A HOH 642 5 HOH HOH 642 A HOH 643 5 HOH HOH 643 A HOH 644 5 HOH HOH 644 A HOH 645 5 HOH HOH 645 A HOH 646 5 HOH HOH 646 A HOH 647 5 HOH HOH 647 A HOH 648 5 HOH HOH 648 A HOH 649 5 HOH HOH 649 A HOH 650 5 HOH HOH 650 A HOH 651 5 HOH HOH 651 A HOH 652 5 HOH HOH 652 A HOH 653 5 HOH HOH 653 A HOH 654 5 HOH HOH 654 A HOH 655 5 HOH HOH 655 A HOH 656 5 HOH HOH 656 A HOH 657 5 HOH HOH 657 A HOH 658 5 HOH HOH 658 A HOH 659 5 HOH HOH 659 A HOH 660 5 HOH HOH 660 A HOH 661 5 HOH HOH 661 A HOH 662 5 HOH HOH 662 A HOH 663 5 HOH HOH 663 A HOH 664 5 HOH HOH 664 A HOH 665 5 HOH HOH 665 A HOH 666 5 HOH HOH 666 A HOH 667 5 HOH HOH 667 A HOH 668 5 HOH HOH 668 A HOH 669 5 HOH HOH 669 A HOH 670 5 HOH HOH 670 A HOH 671 5 HOH HOH 671 A HOH 672 5 HOH HOH 672 A HOH 673 5 HOH HOH 673 A HOH 674 5 HOH HOH 674 A HOH 675 5 HOH HOH 675 A HOH 676 5 HOH HOH 676 A HOH 677 5 HOH HOH 677 A HOH 678 5 HOH HOH 678 A HOH 679 5 HOH HOH 679 A HOH 680 5 HOH HOH 680 A HOH 681 5 HOH HOH 681 A HOH 682 5 HOH HOH 682 A HOH 683 5 HOH HOH 683 A HOH 684 5 HOH HOH 684 A HOH 685 5 HOH HOH 685 A HOH 686 5 HOH HOH 686 A HOH 687 5 HOH HOH 687 A HOH 688 5 HOH HOH 688 A HOH 689 5 HOH HOH 689 A HOH 690 5 HOH HOH 690 A HOH 691 5 HOH HOH 691 A HOH 692 5 HOH HOH 692 A HOH 693 5 HOH HOH 693 A HOH 694 5 HOH HOH 694 A HOH 695 5 HOH HOH 695 A HOH 696 5 HOH HOH 696 A HOH 697 5 HOH HOH 697 A HOH 698 5 HOH HOH 698 A HOH 699 5 HOH HOH 699 A HOH 700 5 HOH HOH 700 A HOH 701 5 HOH HOH 701 A HOH 702 5 HOH HOH 702 A HOH 703 5 HOH HOH 703 A HOH 704 5 HOH HOH 704 A HOH 705 5 HOH HOH 705 A HOH 706 5 HOH HOH 706 A HOH 707 5 HOH HOH 707 A HOH 708 5 HOH HOH 708 A HOH 709 5 HOH HOH 709 A HOH 710 5 HOH HOH 710 A HOH 711 5 HOH HOH 711 A HOH 712 5 HOH HOH 712 A MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A ALA 3 n 3 ALA 3 A SER 4 n 4 SER 4 A GLN 5 n 5 GLN 5 A PHE 6 n 6 PHE 6 A SER 7 n 7 SER 7 A ALA 8 n 8 ALA 8 A GLN 9 n 9 GLN 9 A VAL 10 n 10 VAL 10 A LEU 11 n 11 LEU 11 A ASP 12 n 12 ASP 12 A TRP 13 n 13 TRP 13 A TYR 14 n 14 TYR 14 A ASP 15 n 15 ASP 15 A LYS 16 n 16 LYS 16 A TYR 17 n 17 TYR 17 A GLY 18 n 18 GLY 18 A ARG 19 n 19 ARG 19 A LYS 20 n 20 LYS 20 A THR 21 n 21 THR 21 A LEU 22 n 22 LEU 22 A PRO 23 n 23 PRO 23 A TRP 24 n 24 TRP 24 A GLN 25 n 25 GLN 25 A ILE 26 n 26 ILE 26 A ASP 27 n 27 ASP 27 A LYS 28 n 28 LYS 28 A THR 29 n 29 THR 29 A PRO 30 n 30 PRO 30 A TYR 31 n 31 TYR 31 A LYS 32 n 32 LYS 32 A VAL 33 n 33 VAL 33 A TRP 34 n 34 TRP 34 A LEU 35 n 35 LEU 35 A SER 36 n 36 SER 36 A GLU 37 n 37 GLU 37 A VAL 38 n 38 VAL 38 A MET 39 n 39 MET 39 A LEU 40 n 40 LEU 40 A GLN 41 n 41 GLN 41 A GLN 42 n 42 GLN 42 A THR 43 n 43 THR 43 A GLN 44 n 44 GLN 44 A VAL 45 n 45 VAL 45 A ALA 46 n 46 ALA 46 A THR 47 n 47 THR 47 A VAL 48 n 48 VAL 48 A ILE 49 n 49 ILE 49 A PRO 50 n 50 PRO 50 A TYR 51 n 51 TYR 51 A PHE 52 n 52 PHE 52 A GLU 53 n 53 GLU 53 A ARG 54 n 54 ARG 54 A PHE 55 n 55 PHE 55 A MET 56 n 56 MET 56 A ALA 57 n 57 ALA 57 A ARG 58 n 58 ARG 58 A PHE 59 n 59 PHE 59 A PRO 60 n 60 PRO 60 A THR 61 n 61 THR 61 A VAL 62 n 62 VAL 62 A THR 63 n 63 THR 63 A ASP 64 n 64 ASP 64 A LEU 65 n 65 LEU 65 A ALA 66 n 66 ALA 66 A ASN 67 n 67 ASN 67 A ALA 68 n 68 ALA 68 A PRO 69 n 69 PRO 69 A LEU 70 n 70 LEU 70 A ASP 71 n 71 ASP 71 A GLU 72 n 72 GLU 72 A VAL 73 n 73 VAL 73 A LEU 74 n 74 LEU 74 A HIS 75 n 75 HIS 75 A LEU 76 n 76 LEU 76 A TRP 77 n 77 TRP 77 A THR 78 n 78 THR 78 A GLY 79 n 79 GLY 79 A LEU 80 n 80 LEU 80 A GLY 81 n 81 GLY 81 A TYR 82 n 82 TYR 82 A TYR 83 n 83 TYR 83 A ALA 84 n 84 ALA 84 A ARG 85 n 85 ARG 85 A ALA 86 n 86 ALA 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A HIS 90 n 90 HIS 90 A LYS 91 n 91 LYS 91 A ALA 92 n 92 ALA 92 A ALA 93 n 93 ALA 93 A GLN 94 n 94 GLN 94 A GLN 95 n 95 GLN 95 A VAL 96 n 96 VAL 96 A ALA 97 n 97 ALA 97 A THR 98 n 98 THR 98 A LEU 99 n 99 LEU 99 A HIS 100 n 100 HIS 100 A GLY 101 n 101 GLY 101 A GLY 102 n 102 GLY 102 A LYS 103 n 103 LYS 103 A PHE 104 n 104 PHE 104 A PRO 105 n 105 PRO 105 A GLU 106 n 106 GLU 106 A THR 107 n 107 THR 107 A PHE 108 n 108 PHE 108 A GLU 109 n 109 GLU 109 A GLU 110 n 110 GLU 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A ALA 113 n 113 ALA 113 A LEU 114 n 114 LEU 114 A PRO 115 n 115 PRO 115 A GLY 116 n 116 GLY 116 A VAL 117 n 117 VAL 117 A GLY 118 n 118 GLY 118 A ARG 119 n 119 ARG 119 A SER 120 n 120 SER 120 A THR 121 n 121 THR 121 A ALA 122 n 122 ALA 122 A GLY 123 n 123 GLY 123 A ALA 124 n 124 ALA 124 A ILE 125 n 125 ILE 125 A LEU 126 n 126 LEU 126 A SER 127 n 127 SER 127 A LEU 128 n 128 LEU 128 A SER 129 n 129 SER 129 A LEU 130 n 130 LEU 130 A GLY 131 n 131 GLY 131 A LYS 132 n 132 LYS 132 A HIS 133 n 133 HIS 133 A PHE 134 n 134 PHE 134 A PRO 135 n 135 PRO 135 A ILE 136 n 136 ILE 136 A LEU 137 n 137 LEU 137 A ASP 138 n 138 ASP 138 A GLY 139 n 139 GLY 139 A ASN 140 n 140 ASN 140 A VAL 141 n 141 VAL 141 A LYS 142 n 142 LYS 142 A ARG 143 n 143 ARG 143 A VAL 144 n 144 VAL 144 A LEU 145 n 145 LEU 145 A ALA 146 n 146 ALA 146 A ARG 147 n 147 ARG 147 A CYS 148 n 148 CYS 148 A TYR 149 n 149 TYR 149 A ALA 150 n 150 ALA 150 A VAL 151 n 151 VAL 151 A SER 152 n 152 SER 152 A GLY 153 n 153 GLY 153 A TRP 154 n 154 TRP 154 A PRO 155 n 155 PRO 155 A GLY 156 n 156 GLY 156 A LYS 157 n 157 LYS 157 A LYS 158 n 158 LYS 158 A GLU 159 n 159 GLU 159 A VAL 160 n 160 VAL 160 A GLU 161 n 161 GLU 161 A ASN 162 n 162 ASN 162 A LYS 163 n 163 LYS 163 A LEU 164 n 164 LEU 164 A TRP 165 n 165 TRP 165 A SER 166 n 166 SER 166 A LEU 167 n 167 LEU 167 A SER 168 n 168 SER 168 A GLU 169 n 169 GLU 169 A GLN 170 n 170 GLN 170 A VAL 171 n 171 VAL 171 A THR 172 n 172 THR 172 A PRO 173 n 173 PRO 173 A ALA 174 n 174 ALA 174 A VAL 175 n 175 VAL 175 A GLY 176 n 176 GLY 176 A VAL 177 n 177 VAL 177 A GLU 178 n 178 GLU 178 A ARG 179 n 179 ARG 179 A PHE 180 n 180 PHE 180 A ASN 181 n 181 ASN 181 A GLN 182 n 182 GLN 182 A ALA 183 n 183 ALA 183 A MET 184 n 184 MET 184 A MET 185 n 185 MET 185 A ASP 186 n 186 ASP 186 A LEU 187 n 187 LEU 187 A GLY 188 n 188 GLY 188 A ALA 189 n 189 ALA 189 A MET 190 n 190 MET 190 A ILE 191 n 191 ILE 191 A CYS 192 n 192 CYS 192 A THR 193 n 193 THR 193 A ARG 194 n 194 ARG 194 A SER 195 n 195 SER 195 A LYS 196 n 196 LYS 196 A PRO 197 n 197 PRO 197 A LYS 198 n 198 LYS 198 A CYS 199 n 199 CYS 199 A SER 200 n 200 SER 200 A LEU 201 n 201 LEU 201 A CYS 202 n 202 CYS 202 A PRO 203 n 203 PRO 203 A LEU 204 n 204 LEU 204 A GLN 205 n 205 GLN 205 A ASN 206 n 206 ASN 206 A GLY 207 n 207 GLY 207 A CYS 208 n 208 CYS 208 A ILE 209 n 209 ILE 209 A ALA 210 n 210 ALA 210 A ALA 211 n 211 ALA 211 A ALA 212 n 212 ALA 212 A ASN 213 n 213 ASN 213 A ASN 214 n 214 ASN 214 A SER 215 n 215 SER 215 A TRP 216 n 216 TRP 216 A ALA 217 n 217 ALA 217 A LEU 218 n 218 LEU 218 A TYR 219 n 219 TYR 219 A PRO 220 n 220 PRO 220 A GLY 221 n 221 GLY 221 A LYS 222 n 222 LYS 222 A LYS 223 n 223 LYS 223 A PRO 224 n 224 PRO 224 A n 225 225 A 0.1646 0.1701 0.2128 0.2281 1551 1724 5.2 5.2 30059 author_defined_assembly 1 monomeric A CYS 192 A SG CYS 192 1_555 A SF4 300 E FE2 SF4 1_555 A SF4 300 E S1 SF4 1_555 120.9 A CYS 192 A SG CYS 192 1_555 A SF4 300 E FE2 SF4 1_555 A SF4 300 E S3 SF4 1_555 113.1 A SF4 300 E S1 SF4 1_555 A SF4 300 E FE2 SF4 1_555 A SF4 300 E S3 SF4 1_555 102.7 A CYS 192 A SG CYS 192 1_555 A SF4 300 E FE2 SF4 1_555 A SF4 300 E S4 SF4 1_555 108.7 A SF4 300 E S1 SF4 1_555 A SF4 300 E FE2 SF4 1_555 A SF4 300 E S4 SF4 1_555 102.4 A SF4 300 E S3 SF4 1_555 A SF4 300 E FE2 SF4 1_555 A SF4 300 E S4 SF4 1_555 107.9 A CYS 199 A SG CYS 199 1_555 A SF4 300 E FE3 SF4 1_555 A SF4 300 E S1 SF4 1_555 110.3 A CYS 199 A SG CYS 199 1_555 A SF4 300 E FE3 SF4 1_555 A SF4 300 E S2 SF4 1_555 109.5 A SF4 300 E S1 SF4 1_555 A SF4 300 E FE3 SF4 1_555 A SF4 300 E S2 SF4 1_555 105.8 A CYS 199 A SG CYS 199 1_555 A SF4 300 E FE3 SF4 1_555 A SF4 300 E S4 SF4 1_555 121.6 A SF4 300 E S1 SF4 1_555 A SF4 300 E FE3 SF4 1_555 A SF4 300 E S4 SF4 1_555 104.0 A SF4 300 E S2 SF4 1_555 A SF4 300 E FE3 SF4 1_555 A SF4 300 E S4 SF4 1_555 104.4 A CYS 202 A SG CYS 202 1_555 A SF4 300 E FE1 SF4 1_555 A SF4 300 E S2 SF4 1_555 113.8 A CYS 202 A SG CYS 202 1_555 A SF4 300 E FE1 SF4 1_555 A SF4 300 E S3 SF4 1_555 118.1 A SF4 300 E S2 SF4 1_555 A SF4 300 E FE1 SF4 1_555 A SF4 300 E S3 SF4 1_555 103.0 A CYS 202 A SG CYS 202 1_555 A SF4 300 E FE1 SF4 1_555 A SF4 300 E S4 SF4 1_555 110.8 A SF4 300 E S2 SF4 1_555 A SF4 300 E FE1 SF4 1_555 A SF4 300 E S4 SF4 1_555 102.2 A SF4 300 E S3 SF4 1_555 A SF4 300 E FE1 SF4 1_555 A SF4 300 E S4 SF4 1_555 107.5 A CYS 208 A SG CYS 208 1_555 A SF4 300 E FE4 SF4 1_555 A SF4 300 E S1 SF4 1_555 108.9 A CYS 208 A SG CYS 208 1_555 A SF4 300 E FE4 SF4 1_555 A SF4 300 E S2 SF4 1_555 109.9 A SF4 300 E S1 SF4 1_555 A SF4 300 E FE4 SF4 1_555 A SF4 300 E S2 SF4 1_555 104.9 A CYS 208 A SG CYS 208 1_555 A SF4 300 E FE4 SF4 1_555 A SF4 300 E S3 SF4 1_555 121.0 A SF4 300 E S1 SF4 1_555 A SF4 300 E FE4 SF4 1_555 A SF4 300 E S3 SF4 1_555 105.0 A SF4 300 E S2 SF4 1_555 A SF4 300 E FE4 SF4 1_555 A SF4 300 E S3 SF4 1_555 106.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A LYS 225 A LYS 225 1 Y 1 -4.52 0.60 121.00 116.48 A A A CB CG CD1 TYR TYR TYR 82 82 82 N 1 A PHE 59 -119.84 76.65 1 A LEU 137 -159.67 65.06 1 A ILE 191 -120.61 -55.87 1 A LYS 196 44.15 70.78 24.1 CNS 0.9 WAS ALSO USED IN REFINEMENT. 0.2281 0.1722 1.55 43.00 8297 1724 35337 35337 7588 5.2 98.7 RANDOM 1 FREE R 0.0 difference fourier 1KG2 ENGH & HUBER 0.16 8 0.00 2001.52 1.55 43.00 212 2005 41 0 1752 0.010 0.026 0.069 0.0231 0.046 0.048 0.012 0.000 0.065 0.000 18.2 1.55 43 1KG3 35337 35337 0 0.043 1 17.2 4 98.7 1.55 1.58 1936 0.25 1 4 97.6 refinement SHELXL-97 data scaling SCALEPACK refinement CNS data reduction DENZO phasing CNS Crystal structure of the core fragment of MutY from E.coli at 1.55A resolution 1 N N 2 N N 2 N N 2 N N 3 N N 4 N N 4 N N 4 N N 5 N N A GLN 2 A GLN 2 HELX_P A GLY 18 A GLY 18 1 1 17 A THR 29 A THR 29 HELX_P A GLN 41 A GLN 41 1 2 13 A GLN 44 A GLN 44 HELX_P A PHE 59 A PHE 59 1 3 16 A THR 61 A THR 61 HELX_P A ALA 68 A ALA 68 1 4 8 A PRO 69 A PRO 69 HELX_P A THR 78 A THR 78 1 5 10 A TYR 83 A TYR 83 HELX_P A HIS 100 A HIS 100 1 6 18 A THR 107 A THR 107 HELX_P A ALA 113 A ALA 113 1 7 7 A GLY 118 A GLY 118 HELX_P A GLY 131 A GLY 131 1 8 14 A ASP 138 A ASP 138 HELX_P A TYR 149 A TYR 149 1 9 12 A LYS 157 A LYS 157 HELX_P A THR 172 A THR 172 1 10 16 A GLY 176 A GLY 176 HELX_P A ILE 191 A ILE 191 1 11 16 A LYS 198 A LYS 198 HELX_P A CYS 202 A CYS 202 5 12 5 A CYS 208 A CYS 208 HELX_P A ASN 214 A ASN 214 1 13 7 A SER 215 A SER 215 HELX_P A TYR 219 A TYR 219 5 14 5 metalc 2.339 A CYS 192 A SG CYS 192 1_555 A SF4 300 E FE2 SF4 1_555 metalc 2.330 A CYS 199 A SG CYS 199 1_555 A SF4 300 E FE3 SF4 1_555 metalc 2.289 A CYS 202 A SG CYS 202 1_555 A SF4 300 E FE1 SF4 1_555 metalc 2.349 A CYS 208 A SG CYS 208 1_555 A SF4 300 E FE4 SF4 1_555 HYDROLASE DNA Repair, HYDROLASE A TYR 219 A TYR 219 1 A PRO 220 A PRO 220 -8.07 MUTY_ECOLI UNP 1 1 P17802 MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGL GYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEV ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKKPK 1 225 1KG3 1 225 P17802 A 1 1 225 BINDING SITE FOR RESIDUE SO4 A 301 A SO4 301 Software 6 BINDING SITE FOR RESIDUE SO4 A 302 A SO4 302 Software 7 BINDING SITE FOR RESIDUE SO4 A 303 A SO4 303 Software 5 BINDING SITE FOR RESIDUE SF4 A 300 A SF4 300 Software 4 BINDING SITE FOR RESIDUE GOL A 310 A GOL 310 Software 6 BINDING SITE FOR RESIDUE GOL A 311 A GOL 311 Software 6 BINDING SITE FOR RESIDUE GOL A 312 A GOL 312 Software 8 A PRO 69 A PRO 69 6 1_555 A LEU 70 A LEU 70 6 1_555 A HOH 512 I HOH 6 1_555 A HOH 546 I HOH 6 1_555 A HOH 557 I HOH 6 1_555 A HOH 562 I HOH 6 1_555 A GLY 176 A GLY 176 7 1_555 A VAL 177 A VAL 177 7 1_555 A GLU 178 A GLU 178 7 1_555 A ARG 179 A ARG 179 7 1_555 A HOH 590 I HOH 7 1_555 A HOH 622 I HOH 7 1_555 A HOH 672 I HOH 7 1_555 A GLU 161 A GLU 161 5 1_555 A TRP 165 A TRP 165 5 1_555 A HOH 527 I HOH 5 1_555 A HOH 616 I HOH 5 1_555 A HOH 704 I HOH 5 1_555 A CYS 192 A CYS 192 4 1_555 A CYS 199 A CYS 199 4 1_555 A CYS 202 A CYS 202 4 1_555 A CYS 208 A CYS 208 4 1_555 A GLN 42 A GLN 42 6 4_446 A THR 43 A THR 43 6 4_446 A ARG 58 A ARG 58 6 1_555 A ASP 64 A ASP 64 6 1_555 A GLY 79 A GLY 79 6 4_446 A LEU 80 A LEU 80 6 4_446 A PHE 108 A PHE 108 6 1_555 A ARG 119 A ARG 119 6 1_555 A PHE 134 A PHE 134 6 1_555 A ASN 213 A ASN 213 6 4_445 A HOH 510 I HOH 6 1_555 A HOH 535 I HOH 6 1_555 A PRO 30 A PRO 30 8 1_555 A TYR 31 A TYR 31 8 1_555 A THR 61 A THR 61 8 1_555 A VAL 62 A VAL 62 8 1_555 A LYS 103 A LYS 103 8 1_555 A PHE 104 A PHE 104 8 1_555 A HOH 518 I HOH 8 1_555 A HOH 684 I HOH 8 1_555 5 C 1 2 1