0.028927
0.000000
0.008602
0.000000
0.014032
0.000000
0.000000
0.000000
0.019106
0.00000
0.00000
0.00000
Buckler, D.R.
Zhou, Y.
Stock, A.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
106.56
90.00
34.570
71.267
54.605
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C N S -1
58.082
THIOCYANATE ION
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
10
153
164
10.1016/S0969-2126(01)00706-7
11839301
Evidence of intradomain and interdomain flexibility in an OmpR/PhoB homolog from Thermotoga maritima.
2002
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
parabolic collimating mirror
CCD
2001-04-13
ADSC QUANTUM 4
double-crystal
MAD
M
x-ray
1
0.9640
1.0
0.9796
1.0
0.9797
1.0
X8C
NSLS
0.9640, 0.9796, 0.9797
SYNCHROTRON
NSLS BEAMLINE X8C
26478.363
DNA BINDING RESPONSE REGULATOR D
1
man
polymer
58.082
THIOCYANATE ION
6
syn
non-polymer
18.015
water
206
nat
water
DRRD
no
yes
(MSE)NVRVLVVEDERDLADLITEALKKE(MSE)FTVDVCYDGEEG(MSE)Y(MSE)ALNEPFDVVILDI(MSE)LPVHD
GWEILKS(MSE)RESGVNTPVL(MSE)LTALSDVEYRVKGLN(MSE)GADDYLPKPFDLRELIARVRALIRRKSESKSTK
LVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLV(MSE)NKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVD
KGFKKKIIHTVRGIGYVARDE
MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLML
TALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQIL
EYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYVARDE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermotoga
Escherichia
sample
DRRD
2336
Thermotoga maritima
562
Escherichia coli
B834
PLASMID
pDrrD
2
2.43
49.48
VAPOR DIFFUSION, HANGING DROP
6.5
Protein at 12-25 mg/ml in 0.0125 M tris(hydroxymethyl)amino methane (TRIS) pH 8.0, 0.50 M NaCl; precipitating solution: 20% (w/v) PEG 3350, 0.10 M 2-(N-Morpholino)ethanesulfonic acid (MES) pH 6.5, 0.20 M potassium thiocyanate (KSCN), VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
repository
Initial release
Version format compliance
Advisory
Version format compliance
1
0
2001-12-05
1
1
2008-04-27
1
2
2011-07-13
RCSB
Y
RCSB
2001-11-28
REL
REL
SCN
THIOCYANATE ION
HOH
water
SCN
301
2
SCN
SCN
301
A
SCN
302
2
SCN
SCN
302
A
SCN
303
2
SCN
SCN
303
A
SCN
304
2
SCN
SCN
304
A
SCN
305
2
SCN
SCN
305
A
SCN
306
2
SCN
SCN
306
A
HOH
1
3
HOH
HOH
307
A
HOH
2
3
HOH
HOH
308
A
HOH
3
3
HOH
HOH
309
A
HOH
4
3
HOH
HOH
310
A
HOH
5
3
HOH
HOH
311
A
HOH
6
3
HOH
HOH
312
A
HOH
7
3
HOH
HOH
313
A
HOH
8
3
HOH
HOH
314
A
HOH
9
3
HOH
HOH
315
A
HOH
10
3
HOH
HOH
316
A
HOH
11
3
HOH
HOH
317
A
HOH
12
3
HOH
HOH
318
A
HOH
13
3
HOH
HOH
319
A
HOH
14
3
HOH
HOH
320
A
HOH
15
3
HOH
HOH
321
A
HOH
16
3
HOH
HOH
322
A
HOH
17
3
HOH
HOH
323
A
HOH
18
3
HOH
HOH
324
A
HOH
19
3
HOH
HOH
325
A
HOH
20
3
HOH
HOH
326
A
HOH
21
3
HOH
HOH
327
A
HOH
22
3
HOH
HOH
328
A
HOH
23
3
HOH
HOH
329
A
HOH
24
3
HOH
HOH
330
A
HOH
25
3
HOH
HOH
331
A
HOH
26
3
HOH
HOH
332
A
HOH
27
3
HOH
HOH
333
A
HOH
28
3
HOH
HOH
334
A
HOH
29
3
HOH
HOH
335
A
HOH
30
3
HOH
HOH
336
A
HOH
31
3
HOH
HOH
337
A
HOH
32
3
HOH
HOH
338
A
HOH
33
3
HOH
HOH
339
A
HOH
34
3
HOH
HOH
340
A
HOH
35
3
HOH
HOH
341
A
HOH
36
3
HOH
HOH
342
A
HOH
37
3
HOH
HOH
343
A
HOH
38
3
HOH
HOH
344
A
HOH
39
3
HOH
HOH
345
A
HOH
40
3
HOH
HOH
346
A
HOH
41
3
HOH
HOH
347
A
HOH
42
3
HOH
HOH
348
A
HOH
43
3
HOH
HOH
349
A
HOH
44
3
HOH
HOH
350
A
HOH
45
3
HOH
HOH
351
A
HOH
46
3
HOH
HOH
352
A
HOH
47
3
HOH
HOH
353
A
HOH
48
3
HOH
HOH
354
A
HOH
49
3
HOH
HOH
355
A
HOH
50
3
HOH
HOH
356
A
HOH
51
3
HOH
HOH
357
A
HOH
52
3
HOH
HOH
358
A
HOH
53
3
HOH
HOH
359
A
HOH
54
3
HOH
HOH
360
A
HOH
55
3
HOH
HOH
361
A
HOH
56
3
HOH
HOH
362
A
HOH
57
3
HOH
HOH
363
A
HOH
58
3
HOH
HOH
364
A
HOH
59
3
HOH
HOH
365
A
HOH
60
3
HOH
HOH
366
A
HOH
61
3
HOH
HOH
367
A
HOH
62
3
HOH
HOH
368
A
HOH
63
3
HOH
HOH
369
A
HOH
64
3
HOH
HOH
370
A
HOH
65
3
HOH
HOH
371
A
HOH
66
3
HOH
HOH
372
A
HOH
67
3
HOH
HOH
373
A
HOH
68
3
HOH
HOH
374
A
HOH
69
3
HOH
HOH
375
A
HOH
70
3
HOH
HOH
376
A
HOH
71
3
HOH
HOH
377
A
HOH
72
3
HOH
HOH
378
A
HOH
73
3
HOH
HOH
379
A
HOH
74
3
HOH
HOH
380
A
HOH
75
3
HOH
HOH
381
A
HOH
76
3
HOH
HOH
382
A
HOH
77
3
HOH
HOH
383
A
HOH
78
3
HOH
HOH
384
A
HOH
79
3
HOH
HOH
385
A
HOH
80
3
HOH
HOH
386
A
HOH
81
3
HOH
HOH
387
A
HOH
82
3
HOH
HOH
388
A
HOH
83
3
HOH
HOH
389
A
HOH
84
3
HOH
HOH
390
A
HOH
85
3
HOH
HOH
391
A
HOH
86
3
HOH
HOH
392
A
HOH
87
3
HOH
HOH
393
A
HOH
88
3
HOH
HOH
394
A
HOH
89
3
HOH
HOH
395
A
HOH
90
3
HOH
HOH
396
A
HOH
91
3
HOH
HOH
397
A
HOH
92
3
HOH
HOH
398
A
HOH
93
3
HOH
HOH
399
A
HOH
94
3
HOH
HOH
400
A
HOH
95
3
HOH
HOH
401
A
HOH
96
3
HOH
HOH
402
A
HOH
97
3
HOH
HOH
403
A
HOH
98
3
HOH
HOH
404
A
HOH
99
3
HOH
HOH
405
A
HOH
100
3
HOH
HOH
406
A
HOH
101
3
HOH
HOH
407
A
HOH
102
3
HOH
HOH
408
A
HOH
103
3
HOH
HOH
409
A
HOH
104
3
HOH
HOH
410
A
HOH
105
3
HOH
HOH
411
A
HOH
106
3
HOH
HOH
412
A
HOH
107
3
HOH
HOH
413
A
HOH
108
3
HOH
HOH
414
A
HOH
109
3
HOH
HOH
415
A
HOH
110
3
HOH
HOH
416
A
HOH
111
3
HOH
HOH
417
A
HOH
112
3
HOH
HOH
418
A
HOH
113
3
HOH
HOH
419
A
HOH
114
3
HOH
HOH
420
A
HOH
115
3
HOH
HOH
421
A
HOH
116
3
HOH
HOH
422
A
HOH
117
3
HOH
HOH
423
A
HOH
118
3
HOH
HOH
424
A
HOH
119
3
HOH
HOH
425
A
HOH
120
3
HOH
HOH
426
A
HOH
121
3
HOH
HOH
427
A
HOH
122
3
HOH
HOH
428
A
HOH
123
3
HOH
HOH
429
A
HOH
124
3
HOH
HOH
430
A
HOH
125
3
HOH
HOH
431
A
HOH
126
3
HOH
HOH
432
A
HOH
127
3
HOH
HOH
433
A
HOH
128
3
HOH
HOH
434
A
HOH
129
3
HOH
HOH
435
A
HOH
130
3
HOH
HOH
436
A
HOH
131
3
HOH
HOH
437
A
HOH
132
3
HOH
HOH
438
A
HOH
133
3
HOH
HOH
439
A
HOH
134
3
HOH
HOH
440
A
HOH
135
3
HOH
HOH
441
A
HOH
136
3
HOH
HOH
442
A
HOH
137
3
HOH
HOH
443
A
HOH
138
3
HOH
HOH
444
A
HOH
139
3
HOH
HOH
445
A
HOH
140
3
HOH
HOH
446
A
HOH
141
3
HOH
HOH
447
A
HOH
142
3
HOH
HOH
448
A
HOH
143
3
HOH
HOH
449
A
HOH
144
3
HOH
HOH
450
A
HOH
145
3
HOH
HOH
451
A
HOH
146
3
HOH
HOH
452
A
HOH
147
3
HOH
HOH
453
A
HOH
148
3
HOH
HOH
454
A
HOH
149
3
HOH
HOH
455
A
HOH
150
3
HOH
HOH
456
A
HOH
151
3
HOH
HOH
457
A
HOH
152
3
HOH
HOH
458
A
HOH
153
3
HOH
HOH
459
A
HOH
154
3
HOH
HOH
460
A
HOH
155
3
HOH
HOH
461
A
HOH
156
3
HOH
HOH
462
A
HOH
157
3
HOH
HOH
463
A
HOH
158
3
HOH
HOH
464
A
HOH
159
3
HOH
HOH
465
A
HOH
160
3
HOH
HOH
466
A
HOH
161
3
HOH
HOH
467
A
HOH
162
3
HOH
HOH
468
A
HOH
163
3
HOH
HOH
469
A
HOH
164
3
HOH
HOH
470
A
HOH
165
3
HOH
HOH
471
A
HOH
166
3
HOH
HOH
472
A
HOH
167
3
HOH
HOH
473
A
HOH
168
3
HOH
HOH
474
A
HOH
169
3
HOH
HOH
475
A
HOH
170
3
HOH
HOH
476
A
HOH
171
3
HOH
HOH
477
A
HOH
172
3
HOH
HOH
478
A
HOH
173
3
HOH
HOH
479
A
HOH
174
3
HOH
HOH
480
A
HOH
175
3
HOH
HOH
481
A
HOH
176
3
HOH
HOH
482
A
HOH
177
3
HOH
HOH
483
A
HOH
178
3
HOH
HOH
484
A
HOH
179
3
HOH
HOH
485
A
HOH
180
3
HOH
HOH
486
A
HOH
181
3
HOH
HOH
487
A
HOH
182
3
HOH
HOH
488
A
HOH
183
3
HOH
HOH
489
A
HOH
184
3
HOH
HOH
490
A
HOH
185
3
HOH
HOH
491
A
HOH
186
3
HOH
HOH
492
A
HOH
187
3
HOH
HOH
493
A
HOH
188
3
HOH
HOH
494
A
HOH
189
3
HOH
HOH
495
A
HOH
190
3
HOH
HOH
496
A
HOH
191
3
HOH
HOH
497
A
HOH
192
3
HOH
HOH
498
A
HOH
193
3
HOH
HOH
499
A
HOH
194
3
HOH
HOH
500
A
HOH
195
3
HOH
HOH
501
A
HOH
196
3
HOH
HOH
502
A
HOH
197
3
HOH
HOH
503
A
HOH
198
3
HOH
HOH
504
A
HOH
199
3
HOH
HOH
505
A
HOH
200
3
HOH
HOH
506
A
HOH
201
3
HOH
HOH
507
A
HOH
202
3
HOH
HOH
508
A
HOH
203
3
HOH
HOH
509
A
HOH
204
3
HOH
HOH
510
A
HOH
205
3
HOH
HOH
511
A
HOH
206
3
HOH
HOH
512
A
n
1
1
A
ASN
2
n
2
ASN
2
A
VAL
3
n
3
VAL
3
A
ARG
4
n
4
ARG
4
A
VAL
5
n
5
VAL
5
A
LEU
6
n
6
LEU
6
A
VAL
7
n
7
VAL
7
A
VAL
8
n
8
VAL
8
A
GLU
9
n
9
GLU
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
ARG
12
n
12
ARG
12
A
ASP
13
n
13
ASP
13
A
LEU
14
n
14
LEU
14
A
ALA
15
n
15
ALA
15
A
ASP
16
n
16
ASP
16
A
LEU
17
n
17
LEU
17
A
ILE
18
n
18
ILE
18
A
THR
19
n
19
THR
19
A
GLU
20
n
20
GLU
20
A
ALA
21
n
21
ALA
21
A
LEU
22
n
22
LEU
22
A
LYS
23
n
23
LYS
23
A
LYS
24
n
24
LYS
24
A
GLU
25
n
25
GLU
25
A
MSE
26
n
26
MSE
26
A
PHE
27
n
27
PHE
27
A
THR
28
n
28
THR
28
A
VAL
29
n
29
VAL
29
A
ASP
30
n
30
ASP
30
A
VAL
31
n
31
VAL
31
A
CYS
32
n
32
CYS
32
A
TYR
33
n
33
TYR
33
A
ASP
34
n
34
ASP
34
A
GLY
35
n
35
GLY
35
A
GLU
36
n
36
GLU
36
A
GLU
37
n
37
GLU
37
A
GLY
38
n
38
GLY
38
A
MSE
39
n
39
MSE
39
A
TYR
40
n
40
TYR
40
A
MSE
41
n
41
MSE
41
A
ALA
42
n
42
ALA
42
A
LEU
43
n
43
LEU
43
A
ASN
44
n
44
ASN
44
A
GLU
45
n
45
GLU
45
A
PRO
46
n
46
PRO
46
A
PHE
47
n
47
PHE
47
A
ASP
48
n
48
ASP
48
A
VAL
49
n
49
VAL
49
A
VAL
50
n
50
VAL
50
A
ILE
51
n
51
ILE
51
A
LEU
52
n
52
LEU
52
A
ASP
53
n
53
ASP
53
A
ILE
54
n
54
ILE
54
A
MSE
55
n
55
MSE
55
A
LEU
56
n
56
LEU
56
A
PRO
57
n
57
PRO
57
A
VAL
58
n
58
VAL
58
A
HIS
59
n
59
HIS
59
A
ASP
60
n
60
ASP
60
A
GLY
61
n
61
GLY
61
A
TRP
62
n
62
TRP
62
A
GLU
63
n
63
GLU
63
A
ILE
64
n
64
ILE
64
A
LEU
65
n
65
LEU
65
A
LYS
66
n
66
LYS
66
A
SER
67
n
67
SER
67
A
MSE
68
n
68
MSE
68
A
ARG
69
n
69
ARG
69
A
GLU
70
n
70
GLU
70
A
SER
71
n
71
SER
71
A
GLY
72
n
72
GLY
72
A
VAL
73
n
73
VAL
73
A
ASN
74
n
74
ASN
74
A
THR
75
n
75
THR
75
A
PRO
76
n
76
PRO
76
A
VAL
77
n
77
VAL
77
A
LEU
78
n
78
LEU
78
A
MSE
79
n
79
MSE
79
A
LEU
80
n
80
LEU
80
A
THR
81
n
81
THR
81
A
ALA
82
n
82
ALA
82
A
LEU
83
n
83
LEU
83
A
SER
84
n
84
SER
84
A
ASP
85
n
85
ASP
85
A
VAL
86
n
86
VAL
86
A
GLU
87
n
87
GLU
87
A
TYR
88
n
88
TYR
88
A
ARG
89
n
89
ARG
89
A
VAL
90
n
90
VAL
90
A
LYS
91
n
91
LYS
91
A
GLY
92
n
92
GLY
92
A
LEU
93
n
93
LEU
93
A
ASN
94
n
94
ASN
94
A
MSE
95
n
95
MSE
95
A
GLY
96
n
96
GLY
96
A
ALA
97
n
97
ALA
97
A
ASP
98
n
98
ASP
98
A
ASP
99
n
99
ASP
99
A
TYR
100
n
100
TYR
100
A
LEU
101
n
101
LEU
101
A
PRO
102
n
102
PRO
102
A
LYS
103
n
103
LYS
103
A
PRO
104
n
104
PRO
104
A
PHE
105
n
105
PHE
105
A
ASP
106
n
106
ASP
106
A
LEU
107
n
107
LEU
107
A
ARG
108
n
108
ARG
108
A
GLU
109
n
109
GLU
109
A
LEU
110
n
110
LEU
110
A
ILE
111
n
111
ILE
111
A
ALA
112
n
112
ALA
112
A
ARG
113
n
113
ARG
113
A
VAL
114
n
114
VAL
114
A
ARG
115
n
115
ARG
115
A
ALA
116
n
116
ALA
116
A
LEU
117
n
117
LEU
117
A
ILE
118
n
118
ILE
118
A
ARG
119
n
119
ARG
119
A
ARG
120
n
120
ARG
120
A
LYS
121
n
121
LYS
121
A
SER
122
n
122
SER
122
A
GLU
123
n
123
GLU
123
A
SER
124
n
124
SER
124
A
LYS
125
n
125
LYS
125
A
SER
126
n
126
SER
126
A
THR
127
n
127
THR
127
A
LYS
128
n
128
LYS
128
A
LEU
129
n
129
LEU
129
A
VAL
130
n
130
VAL
130
A
CYS
131
n
131
CYS
131
A
GLY
132
n
132
GLY
132
A
ASP
133
n
133
ASP
133
A
LEU
134
n
134
LEU
134
A
ILE
135
n
135
ILE
135
A
LEU
136
n
136
LEU
136
A
ASP
137
n
137
ASP
137
A
THR
138
n
138
THR
138
A
ALA
139
n
139
ALA
139
A
THR
140
n
140
THR
140
A
LYS
141
n
141
LYS
141
A
LYS
142
n
142
LYS
142
A
ALA
143
n
143
ALA
143
A
TYR
144
n
144
TYR
144
A
ARG
145
n
145
ARG
145
A
GLY
146
n
146
GLY
146
A
SER
147
n
147
SER
147
A
LYS
148
n
148
LYS
148
A
GLU
149
n
149
GLU
149
A
ILE
150
n
150
ILE
150
A
ASP
151
n
151
ASP
151
A
LEU
152
n
152
LEU
152
A
THR
153
n
153
THR
153
A
LYS
154
n
154
LYS
154
A
LYS
155
n
155
LYS
155
A
GLU
156
n
156
GLU
156
A
TYR
157
n
157
TYR
157
A
GLN
158
n
158
GLN
158
A
ILE
159
n
159
ILE
159
A
LEU
160
n
160
LEU
160
A
GLU
161
n
161
GLU
161
A
TYR
162
n
162
TYR
162
A
LEU
163
n
163
LEU
163
A
VAL
164
n
164
VAL
164
A
MSE
165
n
165
MSE
165
A
ASN
166
n
166
ASN
166
A
LYS
167
n
167
LYS
167
A
ASN
168
n
168
ASN
168
A
ARG
169
n
169
ARG
169
A
VAL
170
n
170
VAL
170
A
VAL
171
n
171
VAL
171
A
THR
172
n
172
THR
172
A
LYS
173
n
173
LYS
173
A
GLU
174
n
174
GLU
174
A
GLU
175
n
175
GLU
175
A
LEU
176
n
176
LEU
176
A
GLN
177
n
177
GLN
177
A
GLU
178
n
178
GLU
178
A
HIS
179
n
179
HIS
179
A
LEU
180
n
180
LEU
180
A
TRP
181
n
181
TRP
181
A
n
182
182
A
n
183
183
A
n
184
184
A
n
185
185
A
n
186
186
A
VAL
187
n
187
VAL
187
A
PHE
188
n
188
PHE
188
A
SER
189
n
189
SER
189
A
ASP
190
n
190
ASP
190
A
VAL
191
n
191
VAL
191
A
LEU
192
n
192
LEU
192
A
ARG
193
n
193
ARG
193
A
SER
194
n
194
SER
194
A
HIS
195
n
195
HIS
195
A
ILE
196
n
196
ILE
196
A
LYS
197
n
197
LYS
197
A
ASN
198
n
198
ASN
198
A
LEU
199
n
199
LEU
199
A
ARG
200
n
200
ARG
200
A
LYS
201
n
201
LYS
201
A
LYS
202
n
202
LYS
202
A
VAL
203
n
203
VAL
203
A
ASP
204
n
204
ASP
204
A
LYS
205
n
205
LYS
205
A
GLY
206
n
206
GLY
206
A
PHE
207
n
207
PHE
207
A
LYS
208
n
208
LYS
208
A
LYS
209
n
209
LYS
209
A
LYS
210
n
210
LYS
210
A
ILE
211
n
211
ILE
211
A
ILE
212
n
212
ILE
212
A
HIS
213
n
213
HIS
213
A
THR
214
n
214
THR
214
A
VAL
215
n
215
VAL
215
A
ARG
216
n
216
ARG
216
A
GLY
217
n
217
GLY
217
A
ILE
218
n
218
ILE
218
A
GLY
219
n
219
GLY
219
A
TYR
220
n
220
TYR
220
A
VAL
221
n
221
VAL
221
A
ALA
222
n
222
ALA
222
A
ARG
223
n
223
ARG
223
A
ASP
224
n
224
ASP
224
A
GLU
225
n
225
GLU
225
A
0.4011
-0.0044
0.0056
0.4675
-0.1871
0.6133
-0.0089
0.0105
-0.0190
-0.0250
0.0140
0.0123
0.0133
-0.0094
-0.0050
0.0014
0.0034
-0.0021
0.0088
-0.0026
0.0181
refined
21.2920
28.9020
44.6080
X-RAY DIFFRACTION
0.2711
-0.0423
0.1121
0.1670
-0.0784
0.8994
0.0097
-0.0078
0.0143
0.0071
-0.0112
0.0062
-0.0220
-0.0005
0.0016
0.0277
0.0000
0.0010
0.0283
0.0038
0.0285
refined
21.2670
40.3510
76.1670
X-RAY DIFFRACTION
A
2
A
2
A
122
A
122
X-RAY DIFFRACTION
1
A
127
A
127
A
225
A
225
X-RAY DIFFRACTION
2
author_defined_assembly
1
monomeric
A
MSE
26
SELENOMETHIONINE
A
MSE
26
MET
A
MSE
39
SELENOMETHIONINE
A
MSE
39
MET
A
MSE
41
SELENOMETHIONINE
A
MSE
41
MET
A
MSE
55
SELENOMETHIONINE
A
MSE
55
MET
A
MSE
68
SELENOMETHIONINE
A
MSE
68
MET
A
MSE
79
SELENOMETHIONINE
A
MSE
79
MET
A
MSE
95
SELENOMETHIONINE
A
MSE
95
MET
A
MSE
165
SELENOMETHIONINE
A
MSE
165
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
28
A
O
THR
28
A
N
VAL
5
A
N
VAL
5
A
N
LEU
6
A
N
LEU
6
A
O
ILE
51
A
O
ILE
51
A
N
LEU
52
A
N
LEU
52
A
O
LEU
80
A
O
LEU
80
A
N
MSE
79
A
N
MSE
79
A
O
LEU
101
A
O
LEU
101
A
N
LEU
129
A
N
LEU
129
A
O
LEU
136
A
O
LEU
136
A
N
ILE
135
A
N
ILE
135
A
O
TYR
144
A
O
TYR
144
A
N
ALA
143
A
N
ALA
143
A
O
ILE
150
A
O
ILE
150
A
N
VAL
171
A
N
VAL
171
A
O
TYR
220
A
O
TYR
220
A
O
GLY
219
A
O
GLY
219
A
N
VAL
215
A
N
VAL
215
1
A
CG
ASN
2
A
CG
ASN
2
0
Y
1
A
OD1
ASN
2
A
OD1
ASN
2
0
Y
1
A
ND2
ASN
2
A
ND2
ASN
2
0
Y
1
A
CG
ARG
108
A
CG
ARG
108
0
Y
1
A
CD
ARG
108
A
CD
ARG
108
0
Y
1
A
NE
ARG
108
A
NE
ARG
108
0
Y
1
A
CZ
ARG
108
A
CZ
ARG
108
0
Y
1
A
NH1
ARG
108
A
NH1
ARG
108
0
Y
1
A
NH2
ARG
108
A
NH2
ARG
108
0
Y
1
A
CG
LYS
121
A
CG
LYS
121
0
Y
1
A
CD
LYS
121
A
CD
LYS
121
0
Y
1
A
CE
LYS
121
A
CE
LYS
121
0
Y
1
A
NZ
LYS
121
A
NZ
LYS
121
0
Y
1
A
CB
GLU
123
A
CB
GLU
123
0
Y
1
A
CG
GLU
123
A
CG
GLU
123
0
Y
1
A
CD
GLU
123
A
CD
GLU
123
0
Y
1
A
OE1
GLU
123
A
OE1
GLU
123
0
Y
1
A
OE2
GLU
123
A
OE2
GLU
123
0
Y
1
A
CB
SER
126
A
CB
SER
126
0
Y
1
A
OG
SER
126
A
OG
SER
126
0
Y
1
A
CD
LYS
148
A
CD
LYS
148
0
Y
1
A
CE
LYS
148
A
CE
LYS
148
0
Y
1
A
NZ
LYS
148
A
NZ
LYS
148
0
Y
1
A
CG
LYS
173
A
CG
LYS
173
0
Y
1
A
CD
LYS
173
A
CD
LYS
173
0
Y
1
A
CE
LYS
173
A
CE
LYS
173
0
Y
1
A
NZ
LYS
173
A
NZ
LYS
173
0
Y
1
A
CG
GLU
178
A
CG
GLU
178
0
Y
1
A
CD
GLU
178
A
CD
GLU
178
0
Y
1
A
OE1
GLU
178
A
OE1
GLU
178
0
Y
1
A
OE2
GLU
178
A
OE2
GLU
178
0
Y
1
A
CB
SER
189
A
CB
SER
189
0
Y
1
A
OG
SER
189
A
OG
SER
189
0
Y
1
A
CD
LYS
201
A
CD
LYS
201
0
Y
1
A
CE
LYS
201
A
CE
LYS
201
0
Y
1
A
NZ
LYS
201
A
NZ
LYS
201
0
Y
1
A
CD
LYS
205
A
CD
LYS
205
0
Y
1
A
CE
LYS
205
A
CE
LYS
205
0
Y
1
A
NZ
LYS
205
A
NZ
LYS
205
0
Y
1
A
CG
LYS
208
A
CG
LYS
208
0
Y
1
A
CD
LYS
208
A
CD
LYS
208
0
Y
1
A
CE
LYS
208
A
CE
LYS
208
0
Y
1
A
NZ
LYS
208
A
NZ
LYS
208
0
Y
1
A
CG
LYS
209
A
CG
LYS
209
0
Y
1
A
CD
LYS
209
A
CD
LYS
209
0
Y
1
A
CE
LYS
209
A
CE
LYS
209
0
Y
1
A
NZ
LYS
209
A
NZ
LYS
209
0
Y
1
A
MSE
1
A
MSE
1
1
Y
1
A
SER
124
A
SER
124
0
Y
1
A
LYS
125
A
LYS
125
0
Y
1
A
SER
182
A
SER
182
1
Y
1
A
PHE
183
A
PHE
183
1
Y
1
A
ASP
184
A
ASP
184
1
Y
1
A
ASP
185
A
ASP
185
1
Y
1
A
GLU
186
A
GLU
186
1
Y
1
A
VAL
187
A
VAL
187
0
Y
1
A
A
O
O
SER
HOH
189
463
2.08
1
6.77
0.90
118.30
125.07
A
A
A
CB
CG
OD2
ASP
ASP
ASP
48
48
48
N
1
5.19
0.50
120.30
125.49
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
89
89
89
N
1
-3.91
0.50
120.30
116.39
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
89
89
89
N
1
-34.32
1.90
110.10
75.78
A
A
A
CB
CA
C
SER
SER
SER
124
124
124
N
1
-24.28
1.50
110.50
86.22
A
A
A
N
CA
CB
SER
SER
SER
124
124
124
N
1
17.56
2.70
111.20
128.76
A
A
A
CA
CB
OG
SER
SER
SER
124
124
124
N
1
12.86
2.00
110.40
123.26
A
A
A
CB
CA
C
LYS
LYS
LYS
125
125
125
N
1
23.76
2.20
113.40
137.16
A
A
A
CA
CB
CG
LYS
LYS
LYS
125
125
125
N
1
14.94
1.90
110.10
125.04
A
A
A
CB
CA
C
SER
SER
SER
126
126
126
N
1
21.22
2.20
113.40
134.62
A
A
A
CA
CB
CG
GLU
GLU
GLU
178
178
178
N
1
24.38
2.60
111.60
135.98
A
A
A
CB
CG
CD
LYS
LYS
LYS
205
205
205
N
1
A
A
SE
CE
MSE
MSE
26
26
-0.363
0.059
1.950
1.587
N
1
A
A
CA
CB
SER
SER
124
124
1.315
0.015
1.525
2.840
N
1
A
A
CA
CB
LYS
LYS
125
125
0.490
0.022
1.535
2.025
N
1
A
A
CA
CB
SER
SER
126
126
-0.093
0.015
1.525
1.432
N
1
A
A
CB
CG
GLU
GLU
178
178
-0.248
0.019
1.517
1.269
N
1
A
A
CG
CD
LYS
LYS
205
205
-0.508
0.034
1.520
1.012
N
1
A
VAL
58
75.38
-62.09
1
A
SER
124
-23.02
111.88
13.834
0.32
0.00
-0.22
0.33
0.00
-0.78
0.954
0.941
Maximum likelihood target and experimental
phases as Hendrickson-Lattman coefficients
used throughout refinement. TLS refinement
performed for last stages where
each subdomain defined as separate group.
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.2098400
0.1791100
0.1806000
0.1806000
1.50
20.0
2026
40628
40466
5.0
99.58
1.612
0.061
RANDOM
LIKELY RESIDUAL
1
BABINET MODEL WITH MASK
THROUGHOUT
0.0
MAD
0.069
0.072
0.80
0.80
1.40
Engh & Huber
BABINET MODEL WITH MASK
1.50
20.0
206
1998
18
0
1774
0.020
0.022
1758
0.001
0.020
1674
1.650
1.985
2360
1.834
3.000
3866
4.546
3.000
213
12.756
15.000
339
0.105
0.200
278
0.007
0.020
1889
0.002
0.020
339
0.232
0.300
355
0.194
0.300
1553
0.197
0.500
1
0.145
0.500
164
0.037
0.500
4
0.300
0.300
14
0.265
0.300
57
0.142
0.500
27
1.030
1.500
1084
1.771
2.000
1739
2.945
3.000
674
4.526
4.500
621
0.2270000
0.1900000
1.539
140
2816
2816
20
14.7
1.50
20.0
1KGS
40628
40466
1.0
0.0
0.0520000
0.0520000
1
7.5
5.4
99.6
0.1390000
1.50
1.57
5.0
5891
0.1390000
1
5.4
100
phasing
SOLVE
refinement
REFMAC
5.0
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
DNA BINDING RESPONSE REGULATOR D
Crystal Structure at 1.50 A of an OmpR/PhoB Homolog from Thermotoga maritima
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
A
GLU
11
A
GLU
11
HELX_P
A
GLU
25
A
GLU
25
1
1
15
A
ASP
34
A
ASP
34
HELX_P
A
GLU
45
A
GLU
45
1
2
12
A
ASP
60
A
ASP
60
HELX_P
A
SER
71
A
SER
71
1
3
12
A
SER
84
A
SER
84
HELX_P
A
GLY
92
A
GLY
92
1
4
9
A
ASP
106
A
ASP
106
HELX_P
A
SER
122
A
SER
122
1
5
17
A
THR
153
A
THR
153
HELX_P
A
ASN
166
A
ASN
166
1
6
14
A
LYS
173
A
LYS
173
HELX_P
A
LEU
180
A
LEU
180
1
7
8
A
VAL
187
A
VAL
187
HELX_P
A
LYS
205
A
LYS
205
1
8
19
covale
1.338
A
GLU
25
A
C
GLU
25
1_555
A
MSE
26
A
N
MSE
26
1_555
covale
1.337
A
MSE
26
A
C
MSE
26
1_555
A
PHE
27
A
N
PHE
27
1_555
covale
1.323
A
GLY
38
A
C
GLY
38
1_555
A
MSE
39
A
N
MSE
39
1_555
covale
1.331
A
MSE
39
A
C
MSE
39
1_555
A
TYR
40
A
N
TYR
40
1_555
covale
1.325
A
TYR
40
A
C
TYR
40
1_555
A
MSE
41
A
N
MSE
41
1_555
covale
1.316
A
MSE
41
A
C
MSE
41
1_555
A
ALA
42
A
N
ALA
42
1_555
covale
1.327
A
ILE
54
A
C
ILE
54
1_555
A
MSE
55
A
N
MSE
55
1_555
covale
1.333
A
MSE
55
A
C
MSE
55
1_555
A
LEU
56
A
N
LEU
56
1_555
covale
1.331
A
SER
67
A
C
SER
67
1_555
A
MSE
68
A
N
MSE
68
1_555
covale
1.321
A
MSE
68
A
C
MSE
68
1_555
A
ARG
69
A
N
ARG
69
1_555
covale
1.337
A
LEU
78
A
C
LEU
78
1_555
A
MSE
79
A
N
MSE
79
1_555
covale
1.328
A
MSE
79
A
C
MSE
79
1_555
A
LEU
80
A
N
LEU
80
1_555
covale
1.323
A
ASN
94
A
C
ASN
94
1_555
A
MSE
95
A
N
MSE
95
1_555
covale
1.311
A
MSE
95
A
C
MSE
95
1_555
A
GLY
96
A
N
GLY
96
1_555
covale
1.324
A
VAL
164
A
C
VAL
164
1_555
A
MSE
165
A
N
MSE
165
1_555
covale
1.331
A
MSE
165
A
C
MSE
165
1_555
A
ASN
166
A
N
ASN
166
1_555
DNA BINDING PROTEIN
DNA-binding protein, alph-beta sandwich, winged-helix, helix-turn-helix, response regulator, DNA BINDING PROTEIN
A
LYS
103
A
LYS
103
1
A
PRO
104
A
PRO
104
2.06
Q9WYN0_THEMA
UNP
1
1
Q9WYN0
MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLML
TALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQIL
EYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYVARDE
1
225
1KGS
1
225
Q9WYN0
A
1
1
225
1
MET
MODIFIED RESIDUE
MSE
1
1KGS
A
Q9WYN0
UNP
1
1
1
MET
MODIFIED RESIDUE
MSE
26
1KGS
A
Q9WYN0
UNP
26
26
1
MET
MODIFIED RESIDUE
MSE
39
1KGS
A
Q9WYN0
UNP
39
39
1
MET
MODIFIED RESIDUE
MSE
41
1KGS
A
Q9WYN0
UNP
41
41
1
MET
MODIFIED RESIDUE
MSE
55
1KGS
A
Q9WYN0
UNP
55
55
1
MET
MODIFIED RESIDUE
MSE
68
1KGS
A
Q9WYN0
UNP
68
68
1
MET
MODIFIED RESIDUE
MSE
79
1KGS
A
Q9WYN0
UNP
79
79
1
MET
MODIFIED RESIDUE
MSE
95
1KGS
A
Q9WYN0
UNP
95
95
1
MET
MODIFIED RESIDUE
MSE
165
1KGS
A
Q9WYN0
UNP
165
165
5
4
3
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
28
A
THR
28
A
CYS
32
A
CYS
32
A
ARG
4
A
ARG
4
A
VAL
8
A
VAL
8
A
VAL
49
A
VAL
49
A
ASP
53
A
ASP
53
A
VAL
77
A
VAL
77
A
THR
81
A
THR
81
A
ASP
99
A
ASP
99
A
PRO
102
A
PRO
102
A
LYS
128
A
LYS
128
A
CYS
131
A
CYS
131
A
LEU
134
A
LEU
134
A
ASP
137
A
ASP
137
A
LYS
142
A
LYS
142
A
ARG
145
A
ARG
145
A
LYS
148
A
LYS
148
A
ILE
150
A
ILE
150
A
VAL
171
A
VAL
171
A
THR
172
A
THR
172
A
GLY
219
A
GLY
219
A
ALA
222
A
ALA
222
A
ILE
212
A
ILE
212
A
VAL
215
A
VAL
215
BINDING SITE FOR RESIDUE SCN A 301
Software
6
BINDING SITE FOR RESIDUE SCN A 302
Software
4
BINDING SITE FOR RESIDUE SCN A 303
Software
6
BINDING SITE FOR RESIDUE SCN A 304
Software
4
BINDING SITE FOR RESIDUE SCN A 305
Software
5
BINDING SITE FOR RESIDUE SCN A 306
Software
3
A
ALA
116
A
ALA
116
6
1_555
A
ARG
119
A
ARG
119
6
1_555
A
ARG
120
A
ARG
120
6
1_555
A
TYR
144
A
TYR
144
6
1_555
A
GLY
146
A
GLY
146
6
1_555
A
SER
147
A
SER
147
6
1_555
A
VAL
90
A
VAL
90
4
1_555
A
HOH
316
H
HOH
4
1_555
A
HOH
333
H
HOH
4
1_555
A
HOH
338
H
HOH
4
1_555
A
ARG
12
A
ARG
12
6
1_656
A
ASP
16
A
ASP
16
6
1_656
A
TYR
33
A
TYR
33
6
1_656
A
ASN
168
A
ASN
168
6
1_555
A
ARG
223
A
ARG
223
6
1_555
A
HOH
311
H
HOH
6
1_555
A
MSE
39
A
MSE
39
4
1_555
A
TYR
40
A
TYR
40
4
1_555
A
ASN
44
A
ASN
44
4
1_555
A
HOH
406
H
HOH
4
1_555
A
ARG
12
A
ARG
12
5
1_656
A
HIS
213
A
HIS
213
5
1_555
A
ARG
223
A
ARG
223
5
1_555
A
GLU
225
A
GLU
225
5
1_555
A
HOH
426
H
HOH
5
1_555
A
ALA
21
A
ALA
21
3
1_555
A
LYS
24
A
LYS
24
3
1_555
A
HOH
502
H
HOH
3
1_555
4
P 1 21 1