0.010419 0.006015 -0.000001 0.000000 0.012030 -0.000001 0.000000 0.000000 0.013617 0.00000 0.00000 0.00000 Beaman, T.W. Vogel, K.W. Drueckhammer, D.G. Blanchard, J.S. Roderick, S.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90.00 90.00 120.00 95.980 95.980 73.440 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C7 H12 O4 160.168 PIMELIC ACID non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C25 H40 N7 O19 P3 S 867.607 SUCCINYL-COENZYME A non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N C N 274 N O N 275 N O N 276 N C N 277 N C N 278 N C N 279 N C N 280 N C N 281 N C N 282 N O N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N N N 297 S C N 298 N C N 299 N O N 300 N C N 301 N C N 302 N C N 303 N O N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H Y 313 N C Y 314 N N Y 315 N C Y 316 N C Y 317 N N Y 318 N N Y 319 N C Y 320 N N Y 321 N C N 322 N N N 323 R C N 324 R C N 325 N O N 326 S C N 327 N O N 328 R C N 329 N O N 330 N C N 331 N O N 332 R P N 333 N O N 334 N O N 335 N O N 336 R P N 337 N O N 338 N O N 339 N O N 340 N C N 341 N C N 342 R C N 343 N C N 344 N C N 345 N O N 346 N C N 347 N O N 348 N N N 349 N C N 350 N C N 351 N C N 352 N O N 353 N N N 354 N C N 355 N C N 356 N P N 357 N O N 358 N O N 359 N O N 360 N S N 361 N C N 362 N O N 363 N C N 364 N C N 365 N C N 366 N O N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N N N 409 S C N 410 N C N 411 N O N 412 N C N 413 N O N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N N N 423 S C N 424 N C N 425 N O N 426 R C N 427 N O N 428 N C N 429 N O N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N N N 440 S C N 441 N C N 442 N O N 443 N C Y 444 N C Y 445 N C Y 446 N C Y 447 N N Y 448 N C Y 449 N C Y 450 N C Y 451 N C Y 452 N C N 453 N O N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N N N 467 S C N 468 N C N 469 N O N 470 N C Y 471 N C Y 472 N C Y 473 N C Y 474 N C Y 475 N C Y 476 N C N 477 N O N 478 N O N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N N N 491 S C N 492 N C N 493 N O N 494 N C N 495 N C N 496 N C N 497 N O N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing Y 299 N sing Y 300 N doub N 301 N sing Y 302 N sing N 303 N sing Y 304 N sing Y 305 N doub Y 306 N sing Y 307 N doub Y 308 N sing Y 309 N doub N 310 N sing Y 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N doub N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N doub N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N doub N 432 N sing N 433 N sing N 434 N sing N 435 N sing Y 436 N doub Y 437 N sing Y 438 N sing N 439 N sing Y 440 N doub Y 441 N sing Y 442 N sing N 443 N sing Y 444 N sing Y 445 N doub N 446 N sing Y 447 N doub N 448 N sing Y 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N doub N 460 N sing N 461 N sing N 462 N sing N 463 N sing Y 464 N doub Y 465 N sing Y 466 N sing N 467 N sing Y 468 N doub N 469 N sing Y 470 N doub N 471 N sing Y 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N doub N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing US Protein Sci. PRCIEI 0795 0961-8368 11 974 979 10.1110/ps.4310102 11910040 Acyl group specificity at the active site of tetrahydridipicolinate N-succinyltransferase. 2002 10.2210/pdb1kgt/pdb pdb_00001kgt 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 AREA DETECTOR 1999-04-02 XENTRONICS Graphite SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 29918.990 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE N-SUCCINYLTRANSFERASE 2.3.1.117 1 man polymer 160.168 PIMELIC ACID 1 syn non-polymer 867.607 SUCCINYL-COENZYME A 1 syn non-polymer 18.015 water 58 nat water TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE, THP SUCCINYLTRANSFERASE, TETRAHYDROPICOLINATE SUCCINYLASE no no MQQLQNVIESAFERRADITPANVDTVTREAVNQVIGLLDSGALRVAEKIDGQWVTHQWLKKAVLLSFRINDNKVMDGAET RYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS KDGSYSLYCAVIVKKVDAKTRGKVGINELLRTID MQQLQNVIESAFERRADITPANVDTVTREAVNQVIGLLDSGALRVAEKIDGQWVTHQWLKKAVLLSFRINDNKVMDGAET RYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS KDGSYSLYCAVIVKKVDAKTRGKVGINELLRTID A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Mycobacterium Escherichia Escherichia coli sample dapD 1765 Mycobacterium bovis 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET3a 1 2.18 43.45 VAPOR DIFFUSION, HANGING DROP 6.4 PEG 4000, ammonium sulfate, MES, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 software struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2002-04-03 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _software.name _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1TDT contains the apoenzyme structure of DapD 2TDT contains DapD in complex with L-2-aminopimelate and Coenzyme A 3TDT contains DapD in complex with L-2-amino-6-oxopimelate and Coenzyme A Crystal Structure of Tetrahydrodipicolinate N-Succinyltransferase in Complex with L-2-aminopimelate and Succinamide-CoA RCSB Y RCSB 2001-11-28 REL PML PIMELIC ACID SCA SUCCINYL-COENZYME A HOH water PIM 1 2 PML PML 301 A SCO 2 3 SCA SCA 302 A HOH 1 4 HOH HOH 303 A HOH 2 4 HOH HOH 304 A HOH 6 4 HOH HOH 305 A HOH 7 4 HOH HOH 306 A HOH 9 4 HOH HOH 307 A HOH 10 4 HOH HOH 308 A HOH 11 4 HOH HOH 309 A HOH 12 4 HOH HOH 310 A HOH 13 4 HOH HOH 311 A HOH 14 4 HOH HOH 312 A HOH 15 4 HOH HOH 313 A HOH 16 4 HOH HOH 314 A HOH 17 4 HOH HOH 315 A HOH 18 4 HOH HOH 316 A HOH 19 4 HOH HOH 317 A HOH 20 4 HOH HOH 318 A HOH 21 4 HOH HOH 319 A HOH 22 4 HOH HOH 320 A HOH 24 4 HOH HOH 321 A HOH 25 4 HOH HOH 322 A HOH 26 4 HOH HOH 323 A HOH 28 4 HOH HOH 324 A HOH 29 4 HOH HOH 325 A HOH 30 4 HOH HOH 326 A HOH 31 4 HOH HOH 327 A HOH 32 4 HOH HOH 328 A HOH 33 4 HOH HOH 329 A HOH 37 4 HOH HOH 330 A HOH 38 4 HOH HOH 331 A HOH 41 4 HOH HOH 332 A HOH 42 4 HOH HOH 333 A HOH 43 4 HOH HOH 334 A HOH 45 4 HOH HOH 335 A HOH 47 4 HOH HOH 336 A HOH 48 4 HOH HOH 337 A HOH 49 4 HOH HOH 338 A HOH 50 4 HOH HOH 339 A HOH 51 4 HOH HOH 340 A HOH 56 4 HOH HOH 341 A HOH 57 4 HOH HOH 342 A HOH 58 4 HOH HOH 343 A HOH 59 4 HOH HOH 344 A HOH 61 4 HOH HOH 345 A HOH 62 4 HOH HOH 346 A HOH 64 4 HOH HOH 347 A HOH 65 4 HOH HOH 348 A HOH 66 4 HOH HOH 349 A HOH 67 4 HOH HOH 350 A HOH 71 4 HOH HOH 351 A HOH 72 4 HOH HOH 352 A HOH 73 4 HOH HOH 353 A HOH 76 4 HOH HOH 354 A HOH 79 4 HOH HOH 355 A HOH 80 4 HOH HOH 356 A HOH 82 4 HOH HOH 357 A HOH 86 4 HOH HOH 358 A HOH 91 4 HOH HOH 359 A HOH 102 4 HOH HOH 360 A MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A GLN 3 n 3 GLN 3 A LEU 4 n 4 LEU 4 A GLN 5 n 5 GLN 5 A ASN 6 n 6 ASN 6 A VAL 7 n 7 VAL 7 A ILE 8 n 8 ILE 8 A GLU 9 n 9 GLU 9 A SER 10 n 10 SER 10 A ALA 11 n 11 ALA 11 A PHE 12 n 12 PHE 12 A GLU 13 n 13 GLU 13 A ARG 14 n 14 ARG 14 A ARG 15 n 15 ARG 15 A ALA 16 n 16 ALA 16 A ASP 17 n 17 ASP 17 A ILE 18 n 18 ILE 18 A THR 19 n 19 THR 19 A PRO 20 n 20 PRO 20 A ALA 21 n 21 ALA 21 A ASN 22 n 22 ASN 22 A VAL 23 n 23 VAL 23 A ASP 24 n 24 ASP 24 A THR 25 n 25 THR 25 A VAL 26 n 26 VAL 26 A THR 27 n 27 THR 27 A ARG 28 n 28 ARG 28 A GLU 29 n 29 GLU 29 A ALA 30 n 30 ALA 30 A VAL 31 n 31 VAL 31 A ASN 32 n 32 ASN 32 A GLN 33 n 33 GLN 33 A VAL 34 n 34 VAL 34 A ILE 35 n 35 ILE 35 A GLY 36 n 36 GLY 36 A LEU 37 n 37 LEU 37 A LEU 38 n 38 LEU 38 A ASP 39 n 39 ASP 39 A SER 40 n 40 SER 40 A GLY 41 n 41 GLY 41 A ALA 42 n 42 ALA 42 A LEU 43 n 43 LEU 43 A ARG 44 n 44 ARG 44 A VAL 45 n 45 VAL 45 A ALA 46 n 46 ALA 46 A GLU 47 n 47 GLU 47 A LYS 48 n 48 LYS 48 A ILE 49 n 49 ILE 49 A ASP 50 n 50 ASP 50 A GLY 51 n 51 GLY 51 A GLN 52 n 52 GLN 52 A TRP 53 n 53 TRP 53 A VAL 54 n 54 VAL 54 A THR 55 n 55 THR 55 A HIS 56 n 56 HIS 56 A GLN 57 n 57 GLN 57 A TRP 58 n 58 TRP 58 A LEU 59 n 59 LEU 59 A LYS 60 n 60 LYS 60 A LYS 61 n 61 LYS 61 A ALA 62 n 62 ALA 62 A VAL 63 n 63 VAL 63 A LEU 64 n 64 LEU 64 A LEU 65 n 65 LEU 65 A SER 66 n 66 SER 66 A PHE 67 n 67 PHE 67 A ARG 68 n 68 ARG 68 A ILE 69 n 69 ILE 69 A ASN 70 n 70 ASN 70 A ASP 71 n 71 ASP 71 A ASN 72 n 72 ASN 72 A LYS 73 n 73 LYS 73 A VAL 74 n 74 VAL 74 A MET 75 n 75 MET 75 A ASP 76 n 76 ASP 76 A GLY 77 n 77 GLY 77 A ALA 78 n 78 ALA 78 A GLU 79 n 79 GLU 79 A THR 80 n 80 THR 80 A ARG 81 n 81 ARG 81 A TYR 82 n 82 TYR 82 A TYR 83 n 83 TYR 83 A ASP 84 n 84 ASP 84 A LYS 85 n 85 LYS 85 A VAL 86 n 86 VAL 86 A PRO 87 n 87 PRO 87 A MET 88 n 88 MET 88 A LYS 89 n 89 LYS 89 A PHE 90 n 90 PHE 90 A ALA 91 n 91 ALA 91 A ASP 92 n 92 ASP 92 A TYR 93 n 93 TYR 93 A ASP 94 n 94 ASP 94 A GLU 95 n 95 GLU 95 A ALA 96 n 96 ALA 96 A ARG 97 n 97 ARG 97 A PHE 98 n 98 PHE 98 A GLN 99 n 99 GLN 99 A LYS 100 n 100 LYS 100 A GLU 101 n 101 GLU 101 A GLY 102 n 102 GLY 102 A PHE 103 n 103 PHE 103 A ARG 104 n 104 ARG 104 A VAL 105 n 105 VAL 105 A VAL 106 n 106 VAL 106 A PRO 107 n 107 PRO 107 A PRO 108 n 108 PRO 108 A ALA 109 n 109 ALA 109 A THR 110 n 110 THR 110 A VAL 111 n 111 VAL 111 A ARG 112 n 112 ARG 112 A GLN 113 n 113 GLN 113 A GLY 114 n 114 GLY 114 A ALA 115 n 115 ALA 115 A PHE 116 n 116 PHE 116 A ILE 117 n 117 ILE 117 A ALA 118 n 118 ALA 118 A ARG 119 n 119 ARG 119 A ASN 120 n 120 ASN 120 A THR 121 n 121 THR 121 A VAL 122 n 122 VAL 122 A LEU 123 n 123 LEU 123 A MET 124 n 124 MET 124 A PRO 125 n 125 PRO 125 A SER 126 n 126 SER 126 A TYR 127 n 127 TYR 127 A VAL 128 n 128 VAL 128 A ASN 129 n 129 ASN 129 A ILE 130 n 130 ILE 130 A GLY 131 n 131 GLY 131 A ALA 132 n 132 ALA 132 A TYR 133 n 133 TYR 133 A VAL 134 n 134 VAL 134 A ASP 135 n 135 ASP 135 A GLU 136 n 136 GLU 136 A GLY 137 n 137 GLY 137 A THR 138 n 138 THR 138 A MET 139 n 139 MET 139 A VAL 140 n 140 VAL 140 A ASP 141 n 141 ASP 141 A THR 142 n 142 THR 142 A TRP 143 n 143 TRP 143 A ALA 144 n 144 ALA 144 A THR 145 n 145 THR 145 A VAL 146 n 146 VAL 146 A GLY 147 n 147 GLY 147 A SER 148 n 148 SER 148 A CYS 149 n 149 CYS 149 A ALA 150 n 150 ALA 150 A GLN 151 n 151 GLN 151 A ILE 152 n 152 ILE 152 A GLY 153 n 153 GLY 153 A LYS 154 n 154 LYS 154 A ASN 155 n 155 ASN 155 A VAL 156 n 156 VAL 156 A HIS 157 n 157 HIS 157 A LEU 158 n 158 LEU 158 A SER 159 n 159 SER 159 A GLY 160 n 160 GLY 160 A GLY 161 n 161 GLY 161 A VAL 162 n 162 VAL 162 A GLY 163 n 163 GLY 163 A ILE 164 n 164 ILE 164 A GLY 165 n 165 GLY 165 A GLY 166 n 166 GLY 166 A VAL 167 n 167 VAL 167 A LEU 168 n 168 LEU 168 A GLU 169 n 169 GLU 169 A PRO 170 n 170 PRO 170 A LEU 171 n 171 LEU 171 A GLN 172 n 172 GLN 172 A ALA 173 n 173 ALA 173 A ASN 174 n 174 ASN 174 A PRO 175 n 175 PRO 175 A THR 176 n 176 THR 176 A ILE 177 n 177 ILE 177 A ILE 178 n 178 ILE 178 A GLU 179 n 179 GLU 179 A ASP 180 n 180 ASP 180 A ASN 181 n 181 ASN 181 A CYS 182 n 182 CYS 182 A PHE 183 n 183 PHE 183 A ILE 184 n 184 ILE 184 A GLY 185 n 185 GLY 185 A ALA 186 n 186 ALA 186 A ARG 187 n 187 ARG 187 A SER 188 n 188 SER 188 A GLU 189 n 189 GLU 189 A VAL 190 n 190 VAL 190 A VAL 191 n 191 VAL 191 A GLU 192 n 192 GLU 192 A GLY 193 n 193 GLY 193 A VAL 194 n 194 VAL 194 A ILE 195 n 195 ILE 195 A VAL 196 n 196 VAL 196 A GLU 197 n 197 GLU 197 A GLU 198 n 198 GLU 198 A GLY 199 n 199 GLY 199 A SER 200 n 200 SER 200 A VAL 201 n 201 VAL 201 A ILE 202 n 202 ILE 202 A SER 203 n 203 SER 203 A MET 204 n 204 MET 204 A GLY 205 n 205 GLY 205 A VAL 206 n 206 VAL 206 A TYR 207 n 207 TYR 207 A LEU 208 n 208 LEU 208 A GLY 209 n 209 GLY 209 A GLN 210 n 210 GLN 210 A SER 211 n 211 SER 211 A THR 212 n 212 THR 212 A ARG 213 n 213 ARG 213 A ILE 214 n 214 ILE 214 A TYR 215 n 215 TYR 215 A ASP 216 n 216 ASP 216 A ARG 217 n 217 ARG 217 A GLU 218 n 218 GLU 218 A THR 219 n 219 THR 219 A GLY 220 n 220 GLY 220 A GLU 221 n 221 GLU 221 A ILE 222 n 222 ILE 222 A HIS 223 n 223 HIS 223 A TYR 224 n 224 TYR 224 A GLY 225 n 225 GLY 225 A ARG 226 n 226 ARG 226 A VAL 227 n 227 VAL 227 A PRO 228 n 228 PRO 228 A ALA 229 n 229 ALA 229 A GLY 230 n 230 GLY 230 A SER 231 n 231 SER 231 A VAL 232 n 232 VAL 232 A VAL 233 n 233 VAL 233 A VAL 234 n 234 VAL 234 A SER 235 n 235 SER 235 A GLY 236 n 236 GLY 236 A ASN 237 n 237 ASN 237 A LEU 238 n 238 LEU 238 A PRO 239 n 239 PRO 239 A SER 240 n 240 SER 240 A LYS 241 n 241 LYS 241 A ASP 242 n 242 ASP 242 A GLY 243 n 243 GLY 243 A SER 244 n 244 SER 244 A TYR 245 n 245 TYR 245 A SER 246 n 246 SER 246 A LEU 247 n 247 LEU 247 A TYR 248 n 248 TYR 248 A CYS 249 n 249 CYS 249 A ALA 250 n 250 ALA 250 A VAL 251 n 251 VAL 251 A ILE 252 n 252 ILE 252 A VAL 253 n 253 VAL 253 A LYS 254 n 254 LYS 254 A LYS 255 n 255 LYS 255 A VAL 256 n 256 VAL 256 A ASP 257 n 257 ASP 257 A ALA 258 n 258 ALA 258 A LYS 259 n 259 LYS 259 A THR 260 n 260 THR 260 A ARG 261 n 261 ARG 261 A GLY 262 n 262 GLY 262 A LYS 263 n 263 LYS 263 A VAL 264 n 264 VAL 264 A GLY 265 n 265 GLY 265 A ILE 266 n 266 ILE 266 A ASN 267 n 267 ASN 267 A GLU 268 n 268 GLU 268 A LEU 269 n 269 LEU 269 A LEU 270 n 270 LEU 270 A ARG 271 n 271 ARG 271 A THR 272 n 272 THR 272 A ILE 273 n 273 ILE 273 A ASP 274 n 274 ASP 274 A author_and_software_defined_assembly PISA,PQS 3 trimeric 19110 -87 26430 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_765 -y+2,x-y+1,z crystal symmetry operation 143.9700000000 83.1211182552 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_675 -x+y+1,-x+2,z crystal symmetry operation 0.0000000000 166.2422365105 0.0000000000 A N ILE 49 A N ILE 49 A O GLN 52 A O GLN 52 A N MET 75 A N MET 75 A O TYR 82 A O TYR 82 A N ARG 104 A N ARG 104 A O LEU 123 A O LEU 123 A N VAL 122 A N VAL 122 A O VAL 140 A O VAL 140 A N MET 139 A N MET 139 A O LEU 158 A O LEU 158 A N HIS 157 A N HIS 157 A O ILE 184 A O ILE 184 A N PHE 183 A N PHE 183 A O ILE 202 A O ILE 202 A N VAL 201 A N VAL 201 A O SER 231 A O SER 231 A N VAL 234 A N VAL 234 A O VAL 251 A O VAL 251 A O ILE 252 A O ILE 252 A N TYR 215 A N TYR 215 A N ILE 214 A N ILE 214 A O HIS 223 A O HIS 223 A N THR 110 A N THR 110 A O VAL 128 A O VAL 128 A N TYR 127 A N TYR 127 A O VAL 146 A O VAL 146 A N THR 145 A N THR 145 A O ILE 164 A O ILE 164 A N GLY 163 A N GLY 163 A O VAL 190 A O VAL 190 A N GLU 189 A N GLU 189 A O LEU 208 A O LEU 208 A N PHE 116 A N PHE 116 A O VAL 134 A O VAL 134 A N TYR 133 A N TYR 133 A O ILE 152 A O ILE 152 A N GLN 151 A N GLN 151 A O ILE 178 A O ILE 178 A N ILE 177 A N ILE 177 A O VAL 196 A O VAL 196 A N ILE 195 A N ILE 195 A O VAL 227 A O VAL 227 1 A CG GLN 2 A CG GLN 2 1 Y 1 A CD GLN 2 A CD GLN 2 1 Y 1 A OE1 GLN 2 A OE1 GLN 2 1 Y 1 A NE2 GLN 2 A NE2 GLN 2 1 Y 1 A CG GLU 13 A CG GLU 13 1 Y 1 A CD GLU 13 A CD GLU 13 1 Y 1 A OE1 GLU 13 A OE1 GLU 13 1 Y 1 A OE2 GLU 13 A OE2 GLU 13 1 Y 1 A CG GLN 52 A CG GLN 52 1 Y 1 A CD GLN 52 A CD GLN 52 1 Y 1 A OE1 GLN 52 A OE1 GLN 52 1 Y 1 A NE2 GLN 52 A NE2 GLN 52 1 Y 1 A CG ASP 92 A CG ASP 92 1 Y 1 A OD1 ASP 92 A OD1 ASP 92 1 Y 1 A OD2 ASP 92 A OD2 ASP 92 1 Y 1 A CG LYS 241 A CG LYS 241 1 Y 1 A CD LYS 241 A CD LYS 241 1 Y 1 A CE LYS 241 A CE LYS 241 1 Y 1 A NZ LYS 241 A NZ LYS 241 1 Y 1 A CG ASP 274 A CG ASP 274 1 Y 1 A OD1 ASP 274 A OD1 ASP 274 1 Y 1 A OD2 ASP 274 A OD2 ASP 274 1 Y 1 A LEU 4 -106.43 -60.11 1 A PRO 20 -57.24 -7.88 1 A GLN 57 -39.39 -36.41 1 A PRO 108 -99.35 48.96 1 A SER 126 -163.91 -168.66 1 A SER 203 -68.58 -166.61 1 A GLU 218 -67.37 -70.18 0.2610000 0.1680000 0.1710000 0.1710000 2.3 99.0 625 11389 11190 THROUGHOUT 1 2.0 MOLECULAR REPLACEMENT TNT 2.3 99.0 58 2202 66 0 2078 0.024 2.2 2.3 99.0 1KGT 11389 11389 0.0 0.0 0.0720000 1 99.8 0.3390000 2.3 2.5 1 99.9 refinement TNT data reduction X-GEN data scaling XDS phasing TNT Crystal Structure of Tetrahydrodipicolinate N-Succinyltransferase in Complex with Pimelate and Succinyl-CoA 1 N N 2 N N 3 N N 4 N N The biological assembly is a trimer generated from the monomer in the asymmetric unit by the operations: 1-y, x-y, z and -x+y, 1-x, z. A MET 1 A MET 1 HELX_P A ARG 14 A ARG 14 1 1 14 A ARG 15 A ARG 15 HELX_P A ILE 18 A ILE 18 5 2 4 A ASP 24 A ASP 24 HELX_P A SER 40 A SER 40 1 3 17 A HIS 56 A HIS 56 HELX_P A ASN 70 A ASN 70 1 4 15 A ASP 94 A ASP 94 HELX_P A GLY 102 A GLY 102 1 5 9 A ASP 257 A ASP 257 HELX_P A GLY 265 A GLY 265 1 6 9 A ASN 267 A ASN 267 HELX_P A ARG 271 A ARG 271 5 7 5 TRANSFERASE LEFT-HANDED PARALLEL BETA HELIX, TRANSFERASE A PRO 107 A PRO 107 1 A PRO 108 A PRO 108 1.93 A GLU 169 A GLU 169 1 A PRO 170 A PRO 170 -0.06 DAPD_MYCBO UNP 1 1 P56220 MQQLQNVIESAFERRADITPANVDTVTREAVNQVIGLLDSGALRVAEKIDGQWVTHQWLKKAVLLSFRINDNKVMDGAET RYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS KDGSYSLYCAVIVKKVDAKTRGKVGINELLRTID 1 274 1KGT 1 274 P56220 A 1 1 274 2 2 10 6 6 anti-parallel anti-parallel parallel parallel parallel parallel parallel parallel anti-parallel parallel anti-parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel A ALA 46 A ALA 46 A ILE 49 A ILE 49 A GLN 52 A GLN 52 A THR 55 A THR 55 A LYS 73 A LYS 73 A ASP 76 A ASP 76 A ARG 81 A ARG 81 A ASP 84 A ASP 84 A ARG 104 A ARG 104 A VAL 105 A VAL 105 A VAL 122 A VAL 122 A LEU 123 A LEU 123 A MET 139 A MET 139 A VAL 140 A VAL 140 A HIS 157 A HIS 157 A LEU 158 A LEU 158 A PHE 183 A PHE 183 A ILE 184 A ILE 184 A VAL 201 A VAL 201 A ILE 202 A ILE 202 A SER 231 A SER 231 A PRO 239 A PRO 239 A SER 246 A SER 246 A LYS 255 A LYS 255 A ILE 214 A ILE 214 A ASP 216 A ASP 216 A ILE 222 A ILE 222 A HIS 223 A HIS 223 A THR 110 A THR 110 A VAL 111 A VAL 111 A TYR 127 A TYR 127 A VAL 128 A VAL 128 A THR 145 A THR 145 A VAL 146 A VAL 146 A GLY 163 A GLY 163 A ILE 164 A ILE 164 A GLU 189 A GLU 189 A VAL 190 A VAL 190 A TYR 207 A TYR 207 A LEU 208 A LEU 208 A PHE 116 A PHE 116 A ILE 117 A ILE 117 A TYR 133 A TYR 133 A VAL 134 A VAL 134 A GLN 151 A GLN 151 A ILE 152 A ILE 152 A ILE 177 A ILE 177 A ILE 178 A ILE 178 A ILE 195 A ILE 195 A VAL 196 A VAL 196 A ARG 226 A ARG 226 A VAL 227 A VAL 227 BINDING SITE FOR RESIDUE PML A 301 A PML 301 Software 13 BINDING SITE FOR RESIDUE SCA A 302 A SCA 302 Software 25 A PHE 67 A PHE 67 13 3_675 A ARG 104 A ARG 104 13 1_555 A ARG 112 A ARG 112 13 3_675 A ASN 129 A ASN 129 13 3_675 A MET 139 A MET 139 13 1_555 A SER 148 A SER 148 13 3_675 A GLY 166 A GLY 166 13 3_675 A VAL 167 A VAL 167 13 3_675 A LEU 168 A LEU 168 13 3_675 A GLU 169 A GLU 169 13 3_675 A LEU 270 A LEU 270 13 1_555 A SCA 302 C SCA 13 1_555 A HOH 322 D HOH 13 3_675 A ASP 141 A ASP 141 25 1_555 A THR 145 A THR 145 25 3_675 A SER 159 A SER 159 25 1_555 A GLY 163 A GLY 163 25 3_675 A ILE 164 A ILE 164 25 3_675 A GLY 165 A GLY 165 25 3_675 A GLU 169 A GLU 169 25 3_675 A GLY 185 A GLY 185 25 1_555 A ALA 186 A ALA 186 25 1_555 A ARG 187 A ARG 187 25 1_555 A GLU 189 A GLU 189 25 3_675 A VAL 191 A VAL 191 25 3_675 A GLU 192 A GLU 192 25 3_675 A SER 203 A SER 203 25 1_555 A MET 204 A MET 204 25 1_555 A SER 211 A SER 211 25 3_675 A ARG 213 A ARG 213 25 3_675 A ARG 217 A ARG 217 25 1_555 A LYS 254 A LYS 254 25 1_555 A LYS 259 A LYS 259 25 1_555 A THR 260 A THR 260 25 1_555 A LYS 263 A LYS 263 25 1_555 A PML 301 B PML 25 1_555 A HOH 323 D HOH 25 3_675 A HOH 355 D HOH 25 1_555 146 H 3