0.018957 0.010945 0.000000 0.000000 0.021890 0.000000 0.000000 0.000000 0.005352 0.00000 0.00000 0.00000 Qiu, C. Sawada, K. Zhang, X. Cheng, X. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 52.750 52.750 186.860 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking UNKNOWN ATOM OR ION non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 R C N 295 N O N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N N Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C Y 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N C N 364 N C N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N sing Y 313 N doub N 314 N sing Y 315 N doub N 316 N sing Y 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N doub N 337 N sing Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing US Nat.Struct.Biol. NSBIEW 2024 1072-8368 9 217 224 11836534 The PWWP domain of mammalian DNA methyltransferase Dnmt3b defines a new family of DNA-binding folds. 2002 10.2210/pdb1khc/pdb pdb_00001khc 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 95 1 1 IMAGE PLATE 2000-05-27 RIGAKU RAXIS IV confocal multilayer mirror SINGLE WAVELENGTH M x-ray 1 1.54 1.0 1.54 ROTATING ANODE RIGAKU 16670.039 DNA cytosine-5 methyltransferase 3B2 2.1.1.37 PWWP domain (residues 219-365) 1 man polymer UNKNOWN ATOM OR ION 22 syn non-polymer 18.015 water 162 nat water no no GDSTEYQDDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQHFNLAT FNKLVSYRKAMYHTLEKARVRAGKTFSSSPGESLEDQLKPMLEWAHGGFKPTGIEGLKPNKKQPENK GDSTEYQDDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQHFNLAT FNKLVSYRKAMYHTLEKARVRAGKTFSSSPGESLEDQLKPMLEWAHGGFKPTGIEGLKPNKKQPENK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus Escherichia Escherichia coli sample Dnmt3b 10090 Mus musculus 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET28 1 2.25 48 VAPOR DIFFUSION, HANGING DROP 6.5 30% PEG 8000, 0.1M sodium cacodylate, 0.2M sodium acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K 289 chem_comp_atom chem_comp_bond database_2 struct_conn struct_site repository Initial release Version format compliance Version format compliance Atomic model Data collection Database references Derived calculations 1 0 2002-02-27 1 1 2008-04-27 1 2 2011-07-13 1 3 2011-11-16 1 4 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id HETEROGEN THE AUTHORS WERE UNABLE TO FIGURE OUT THE IDENTITY OF THE MOLECULES LABELED AS "UNX" FROM THE ELECTRON DENSITY. RCSB Y RCSB 2001-11-29 REL UNX UNKNOWN ATOM OR ION HOH water UNK 163 2 UNX UNX 163 A UNK 163 2 UNX UNX 164 A UNK 163 2 UNX UNX 165 A UNK 163 2 UNX UNX 166 A UNK 164 2 UNX UNX 167 A UNK 164 2 UNX UNX 168 A UNK 165 2 UNX UNX 169 A UNK 165 2 UNX UNX 170 A UNK 165 2 UNX UNX 171 A UNK 166 2 UNX UNX 172 A UNK 166 2 UNX UNX 173 A UNK 166 2 UNX UNX 174 A UNK 167 2 UNX UNX 175 A UNK 167 2 UNX UNX 176 A UNK 167 2 UNX UNX 177 A UNK 168 2 UNX UNX 178 A UNK 168 2 UNX UNX 179 A UNK 168 2 UNX UNX 180 A UNK 168 2 UNX UNX 181 A UNK 169 2 UNX UNX 182 A UNK 169 2 UNX UNX 183 A UNK 169 2 UNX UNX 184 A HOH 1 3 HOH HOH 1 A HOH 2 3 HOH HOH 2 A HOH 3 3 HOH HOH 3 A HOH 4 3 HOH HOH 4 A HOH 5 3 HOH HOH 5 A HOH 6 3 HOH HOH 6 A HOH 7 3 HOH HOH 7 A HOH 8 3 HOH HOH 8 A HOH 9 3 HOH HOH 9 A HOH 10 3 HOH HOH 10 A HOH 11 3 HOH HOH 11 A HOH 12 3 HOH HOH 12 A HOH 13 3 HOH HOH 13 A HOH 14 3 HOH HOH 14 A HOH 15 3 HOH HOH 15 A HOH 16 3 HOH HOH 16 A HOH 17 3 HOH HOH 17 A HOH 18 3 HOH HOH 18 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 22 3 HOH HOH 22 A HOH 23 3 HOH HOH 23 A HOH 24 3 HOH HOH 24 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 28 3 HOH HOH 28 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 32 3 HOH HOH 32 A HOH 33 3 HOH HOH 33 A HOH 34 3 HOH HOH 34 A HOH 35 3 HOH HOH 35 A HOH 36 3 HOH HOH 36 A HOH 37 3 HOH HOH 37 A HOH 38 3 HOH HOH 38 A HOH 39 3 HOH HOH 39 A HOH 40 3 HOH HOH 40 A HOH 41 3 HOH HOH 41 A HOH 42 3 HOH HOH 42 A HOH 43 3 HOH HOH 43 A HOH 44 3 HOH HOH 44 A HOH 45 3 HOH HOH 45 A HOH 46 3 HOH HOH 46 A HOH 47 3 HOH HOH 47 A HOH 48 3 HOH HOH 48 A HOH 49 3 HOH HOH 49 A HOH 50 3 HOH HOH 50 A HOH 51 3 HOH HOH 51 A HOH 52 3 HOH HOH 52 A HOH 53 3 HOH HOH 53 A HOH 54 3 HOH HOH 54 A HOH 55 3 HOH HOH 55 A HOH 56 3 HOH HOH 56 A HOH 57 3 HOH HOH 57 A HOH 58 3 HOH HOH 58 A HOH 59 3 HOH HOH 59 A HOH 60 3 HOH HOH 60 A HOH 61 3 HOH HOH 61 A HOH 62 3 HOH HOH 62 A HOH 63 3 HOH HOH 63 A HOH 64 3 HOH HOH 64 A HOH 65 3 HOH HOH 65 A HOH 66 3 HOH HOH 66 A HOH 67 3 HOH HOH 67 A HOH 68 3 HOH HOH 68 A HOH 69 3 HOH HOH 69 A HOH 70 3 HOH HOH 70 A HOH 71 3 HOH HOH 71 A HOH 72 3 HOH HOH 72 A HOH 73 3 HOH HOH 73 A HOH 74 3 HOH HOH 74 A HOH 75 3 HOH HOH 75 A HOH 76 3 HOH HOH 76 A HOH 77 3 HOH HOH 77 A HOH 78 3 HOH HOH 78 A HOH 79 3 HOH HOH 79 A HOH 80 3 HOH HOH 80 A HOH 81 3 HOH HOH 81 A HOH 82 3 HOH HOH 82 A HOH 83 3 HOH HOH 83 A HOH 84 3 HOH HOH 84 A HOH 85 3 HOH HOH 85 A HOH 86 3 HOH HOH 86 A HOH 87 3 HOH HOH 87 A HOH 88 3 HOH HOH 88 A HOH 89 3 HOH HOH 89 A HOH 90 3 HOH HOH 90 A HOH 91 3 HOH HOH 91 A HOH 92 3 HOH HOH 92 A HOH 93 3 HOH HOH 93 A HOH 94 3 HOH HOH 94 A HOH 95 3 HOH HOH 95 A HOH 96 3 HOH HOH 96 A HOH 97 3 HOH HOH 97 A HOH 98 3 HOH HOH 98 A HOH 99 3 HOH HOH 99 A HOH 100 3 HOH HOH 100 A HOH 101 3 HOH HOH 101 A HOH 102 3 HOH HOH 102 A HOH 103 3 HOH HOH 103 A HOH 104 3 HOH HOH 104 A HOH 105 3 HOH HOH 105 A HOH 106 3 HOH HOH 106 A HOH 107 3 HOH HOH 107 A HOH 108 3 HOH HOH 108 A HOH 109 3 HOH HOH 109 A HOH 110 3 HOH HOH 110 A HOH 111 3 HOH HOH 111 A HOH 112 3 HOH HOH 112 A HOH 113 3 HOH HOH 113 A HOH 114 3 HOH HOH 114 A HOH 115 3 HOH HOH 115 A HOH 116 3 HOH HOH 116 A HOH 117 3 HOH HOH 117 A HOH 118 3 HOH HOH 118 A HOH 119 3 HOH HOH 119 A HOH 120 3 HOH HOH 120 A HOH 121 3 HOH HOH 121 A HOH 122 3 HOH HOH 122 A HOH 123 3 HOH HOH 123 A HOH 124 3 HOH HOH 124 A HOH 125 3 HOH HOH 125 A HOH 126 3 HOH HOH 126 A HOH 127 3 HOH HOH 127 A HOH 128 3 HOH HOH 128 A HOH 129 3 HOH HOH 129 A HOH 130 3 HOH HOH 130 A HOH 131 3 HOH HOH 131 A HOH 132 3 HOH HOH 132 A HOH 133 3 HOH HOH 133 A HOH 134 3 HOH HOH 134 A HOH 135 3 HOH HOH 135 A HOH 136 3 HOH HOH 136 A HOH 137 3 HOH HOH 137 A HOH 138 3 HOH HOH 138 A HOH 139 3 HOH HOH 139 A HOH 140 3 HOH HOH 140 A HOH 141 3 HOH HOH 141 A HOH 142 3 HOH HOH 142 A HOH 143 3 HOH HOH 143 A HOH 144 3 HOH HOH 144 A HOH 145 3 HOH HOH 145 A HOH 146 3 HOH HOH 146 A HOH 147 3 HOH HOH 147 A HOH 148 3 HOH HOH 148 A HOH 149 3 HOH HOH 149 A HOH 150 3 HOH HOH 150 A HOH 151 3 HOH HOH 151 A HOH 152 3 HOH HOH 152 A HOH 153 3 HOH HOH 153 A HOH 154 3 HOH HOH 154 A HOH 155 3 HOH HOH 155 A HOH 156 3 HOH HOH 156 A HOH 157 3 HOH HOH 157 A HOH 158 3 HOH HOH 158 A HOH 159 3 HOH HOH 159 A HOH 160 3 HOH HOH 160 A HOH 161 3 HOH HOH 161 A HOH 162 3 HOH HOH 162 A n 1 219 A n 2 220 A n 3 221 A THR 222 n 4 THR 222 A GLU 223 n 5 GLU 223 A TYR 224 n 6 TYR 224 A GLN 225 n 7 GLN 225 A ASP 226 n 8 ASP 226 A ASP 227 n 9 ASP 227 A LYS 228 n 10 LYS 228 A GLU 229 n 11 GLU 229 A PHE 230 n 12 PHE 230 A GLY 231 n 13 GLY 231 A ILE 232 n 14 ILE 232 A GLY 233 n 15 GLY 233 A ASP 234 n 16 ASP 234 A LEU 235 n 17 LEU 235 A VAL 236 n 18 VAL 236 A TRP 237 n 19 TRP 237 A GLY 238 n 20 GLY 238 A LYS 239 n 21 LYS 239 A ILE 240 n 22 ILE 240 A LYS 241 n 23 LYS 241 A GLY 242 n 24 GLY 242 A PHE 243 n 25 PHE 243 A SER 244 n 26 SER 244 A TRP 245 n 27 TRP 245 A TRP 246 n 28 TRP 246 A PRO 247 n 29 PRO 247 A ALA 248 n 30 ALA 248 A MET 249 n 31 MET 249 A VAL 250 n 32 VAL 250 A VAL 251 n 33 VAL 251 A SER 252 n 34 SER 252 A TRP 253 n 35 TRP 253 A LYS 254 n 36 LYS 254 A ALA 255 n 37 ALA 255 A THR 256 n 38 THR 256 A SER 257 n 39 SER 257 A LYS 258 n 40 LYS 258 A ARG 259 n 41 ARG 259 A GLN 260 n 42 GLN 260 A ALA 261 n 43 ALA 261 A MET 262 n 44 MET 262 A PRO 263 n 45 PRO 263 A GLY 264 n 46 GLY 264 A MET 265 n 47 MET 265 A ARG 266 n 48 ARG 266 A TRP 267 n 49 TRP 267 A VAL 268 n 50 VAL 268 A GLN 269 n 51 GLN 269 A TRP 270 n 52 TRP 270 A PHE 271 n 53 PHE 271 A GLY 272 n 54 GLY 272 A ASP 273 n 55 ASP 273 A GLY 274 n 56 GLY 274 A LYS 275 n 57 LYS 275 A PHE 276 n 58 PHE 276 A SER 277 n 59 SER 277 A GLU 278 n 60 GLU 278 A ILE 279 n 61 ILE 279 A SER 280 n 62 SER 280 A ALA 281 n 63 ALA 281 A ASP 282 n 64 ASP 282 A LYS 283 n 65 LYS 283 A LEU 284 n 66 LEU 284 A VAL 285 n 67 VAL 285 A ALA 286 n 68 ALA 286 A LEU 287 n 69 LEU 287 A GLY 288 n 70 GLY 288 A LEU 289 n 71 LEU 289 A PHE 290 n 72 PHE 290 A SER 291 n 73 SER 291 A GLN 292 n 74 GLN 292 A HIS 293 n 75 HIS 293 A PHE 294 n 76 PHE 294 A ASN 295 n 77 ASN 295 A LEU 296 n 78 LEU 296 A ALA 297 n 79 ALA 297 A THR 298 n 80 THR 298 A PHE 299 n 81 PHE 299 A ASN 300 n 82 ASN 300 A LYS 301 n 83 LYS 301 A LEU 302 n 84 LEU 302 A VAL 303 n 85 VAL 303 A SER 304 n 86 SER 304 A TYR 305 n 87 TYR 305 A ARG 306 n 88 ARG 306 A LYS 307 n 89 LYS 307 A ALA 308 n 90 ALA 308 A MET 309 n 91 MET 309 A TYR 310 n 92 TYR 310 A HIS 311 n 93 HIS 311 A THR 312 n 94 THR 312 A LEU 313 n 95 LEU 313 A GLU 314 n 96 GLU 314 A LYS 315 n 97 LYS 315 A ALA 316 n 98 ALA 316 A ARG 317 n 99 ARG 317 A VAL 318 n 100 VAL 318 A ARG 319 n 101 ARG 319 A ALA 320 n 102 ALA 320 A GLY 321 n 103 GLY 321 A LYS 322 n 104 LYS 322 A THR 323 n 105 THR 323 A PHE 324 n 106 PHE 324 A SER 325 n 107 SER 325 A SER 326 n 108 SER 326 A SER 327 n 109 SER 327 A PRO 328 n 110 PRO 328 A GLY 329 n 111 GLY 329 A GLU 330 n 112 GLU 330 A SER 331 n 113 SER 331 A LEU 332 n 114 LEU 332 A GLU 333 n 115 GLU 333 A ASP 334 n 116 ASP 334 A GLN 335 n 117 GLN 335 A LEU 336 n 118 LEU 336 A LYS 337 n 119 LYS 337 A PRO 338 n 120 PRO 338 A MET 339 n 121 MET 339 A LEU 340 n 122 LEU 340 A GLU 341 n 123 GLU 341 A TRP 342 n 124 TRP 342 A ALA 343 n 125 ALA 343 A HIS 344 n 126 HIS 344 A GLY 345 n 127 GLY 345 A GLY 346 n 128 GLY 346 A PHE 347 n 129 PHE 347 A LYS 348 n 130 LYS 348 A PRO 349 n 131 PRO 349 A THR 350 n 132 THR 350 A GLY 351 n 133 GLY 351 A ILE 352 n 134 ILE 352 A GLU 353 n 135 GLU 353 A GLY 354 n 136 GLY 354 A LEU 355 n 137 LEU 355 A LYS 356 n 138 LYS 356 A PRO 357 n 139 PRO 357 A ASN 358 n 140 ASN 358 A n 141 359 A n 142 360 A n 143 361 A n 144 362 A n 145 363 A n 146 364 A n 147 365 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 279 A O ILE 61 A N ARG 266 A N ARG 48 A O GLN 269 A O GLN 51 A N MET 249 A N MET 31 A O TRP 246 A O TRP 28 A N GLY 238 A N GLY 20 A N TRP 237 A N TRP 19 A O VAL 285 A O VAL 67 1 A HOH 49 X HOH 1 A HOH 140 X HOH 1 A HOH 150 X HOH 1 A N THR 222 A N THR 4 1 Y 1 A CA THR 222 A CA THR 4 1 Y 1 A O THR 222 A O THR 4 1 Y 1 A CB THR 222 A CB THR 4 1 Y 1 A OG1 THR 222 A OG1 THR 4 1 Y 1 A CG2 THR 222 A CG2 THR 4 1 Y 1 A CB GLN 225 A CB GLN 7 1 Y 1 A CG GLN 225 A CG GLN 7 1 Y 1 A CD GLN 225 A CD GLN 7 1 Y 1 A OE1 GLN 225 A OE1 GLN 7 1 Y 1 A NE2 GLN 225 A NE2 GLN 7 1 Y 1 A CB ASP 227 A CB ASP 9 1 Y 1 A CG ASP 227 A CG ASP 9 1 Y 1 A OD1 ASP 227 A OD1 ASP 9 1 Y 1 A OD2 ASP 227 A OD2 ASP 9 1 Y 1 A CE LYS 228 A CE LYS 10 1 Y 1 A NZ LYS 228 A NZ LYS 10 1 Y 1 A CB PHE 243 A CB PHE 25 1 Y 1 A CG PHE 243 A CG PHE 25 1 Y 1 A CD1 PHE 243 A CD1 PHE 25 1 Y 1 A CD2 PHE 243 A CD2 PHE 25 1 Y 1 A CE1 PHE 243 A CE1 PHE 25 1 Y 1 A CE2 PHE 243 A CE2 PHE 25 1 Y 1 A CZ PHE 243 A CZ PHE 25 1 Y 1 A CE LYS 254 A CE LYS 36 1 Y 1 A NZ LYS 254 A NZ LYS 36 1 Y 1 A CE LYS 301 A CE LYS 83 1 Y 1 A NZ LYS 301 A NZ LYS 83 1 Y 1 A CD1 LEU 332 A CD1 LEU 114 1 Y 1 A CD2 LEU 332 A CD2 LEU 114 1 Y 1 A CD GLU 353 A CD GLU 135 1 Y 1 A OE1 GLU 353 A OE1 GLU 135 1 Y 1 A OE2 GLU 353 A OE2 GLU 135 1 Y 1 A CE LYS 356 A CE LYS 138 1 Y 1 A NZ LYS 356 A NZ LYS 138 1 Y 1 A CA ASN 358 A CA ASN 140 1 Y 1 A C ASN 358 A C ASN 140 1 Y 1 A O ASN 358 A O ASN 140 1 Y 1 A CB ASN 358 A CB ASN 140 1 Y 1 A CG ASN 358 A CG ASN 140 1 Y 1 A OD1 ASN 358 A OD1 ASN 140 1 Y 1 A ND2 ASN 358 A ND2 ASN 140 1 Y 1 A GLY 219 A GLY 1 1 Y 1 A ASP 220 A ASP 2 1 Y 1 A SER 221 A SER 3 1 Y 1 A LYS 359 A LYS 141 1 Y 1 A LYS 360 A LYS 142 1 Y 1 A GLN 361 A GLN 143 1 Y 1 A PRO 362 A PRO 144 1 Y 1 A GLU 363 A GLU 145 1 Y 1 A ASN 364 A ASN 146 1 Y 1 A LYS 365 A LYS 147 1 Y 1 A ASP 226 -147.40 19.86 1 A PHE 230 75.34 131.18 1 A LYS 258 -115.10 -116.37 15.442 0.2370000 0.1900000 1.8 20.0 1477 14656 10 97.1 random 1000000 0.001 1 2.0 MAD 1.8 20.0 162 1241 22 0 1057 0.006 1.3 24.219 0.615 0.2820000 0.2750000 1.88 166 1450 8 11.4 87.7 1.8 20.0 1KHC 15308 15308 0.0 0.0 0.0380000 1 23.6 9.5 99.2 0.1480000 1.8 1.83 9.4 4.3 94.3 phasing SOLVE model building RESOLVE refinement X-PLOR data reduction DENZO data scaling SCALEPACK phasing RESOLVE Crystal Structure of the PWWP Domain of Mammalian DNA Methyltransferase Dnmt3b 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N A SER 252 A SER 34 HELX_P A THR 256 A THR 38 5 1 5 A ASP 282 A ASP 64 HELX_P A LEU 287 A LEU 69 5 2 6 A LEU 289 A LEU 71 HELX_P A PHE 294 A PHE 76 1 3 6 A ASN 295 A ASN 77 HELX_P A LEU 302 A LEU 84 1 4 8 A LEU 302 A LEU 84 HELX_P A GLY 321 A GLY 103 1 5 20 A SER 331 A SER 113 HELX_P A GLY 345 A GLY 127 1 6 15 A THR 350 A THR 132 HELX_P A LYS 356 A LYS 138 5 7 7 covale 1.445 both A UNX 163 B UNK UNX 1_555 A UNX 164 C UNK UNX 1_555 covale 1.195 both A UNX 163 B UNK UNX 1_555 A UNX 165 D UNK UNX 1_555 covale 1.903 both A UNX 163 B UNK UNX 1_555 A UNX 166 E UNK UNX 1_555 covale 2.166 both A UNX 164 C UNK UNX 1_555 A UNX 165 D UNK UNX 1_555 covale 2.078 both A UNX 165 D UNK UNX 1_555 A UNX 166 E UNK UNX 1_555 covale 1.864 both A UNX 167 F UNK UNX 1_555 A UNX 168 G UNK UNX 1_555 covale 1.973 both A UNX 169 H UNK UNX 1_555 A UNX 170 I UNK UNX 1_555 covale 1.932 both A UNX 170 I UNK UNX 1_555 A UNX 171 J UNK UNX 1_555 covale 1.715 both A UNX 172 K UNK UNX 1_555 A UNX 173 L UNK UNX 1_555 covale 1.649 both A UNX 173 L UNK UNX 1_555 A UNX 174 M UNK UNX 1_555 covale 2.007 both A UNX 175 N UNK UNX 1_555 A UNX 176 O UNK UNX 1_555 covale 1.879 both A UNX 178 Q UNK UNX 1_555 A UNX 181 T UNK UNX 1_555 covale 2.123 both A UNX 179 R UNK UNX 1_555 A UNX 181 T UNK UNX 1_555 covale 2.189 both A UNX 182 U UNK UNX 1_555 A UNX 183 V UNK UNX 1_555 TRANSFERASE Five beta-sheets barrel followed by Five-helix bundle, TRANSFERASE A LYS 348 A LYS 130 1 A PRO 349 A PRO 131 0.25 DNM3B_MOUSE UNP 1 219 O88509 GDSTEYQDDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQHFNLAT FNKLVSYRKAMYHTLEKARVRAGKTFSSSPGESLEDQLKPMLEWAHGGFKPTGIEGLKPNKKQPENK 219 365 1KHC 219 365 O88509 A 1 1 147 5 anti-parallel anti-parallel anti-parallel anti-parallel A PHE 276 A PHE 58 A SER 280 A SER 62 A MET 265 A MET 47 A TRP 270 A TRP 52 A SER 244 A SER 26 A VAL 251 A VAL 33 A LEU 235 A LEU 17 A ILE 240 A ILE 22 A VAL 285 A VAL 67 A ALA 286 A ALA 68 BINDING SITE FOR RESIDUE UNX A 163 A UNX 163 Software 4 BINDING SITE FOR RESIDUE UNX A 164 A UNX 164 Software 5 BINDING SITE FOR RESIDUE UNX A 165 A UNX 165 Software 5 BINDING SITE FOR RESIDUE UNX A 166 A UNX 166 Software 7 BINDING SITE FOR RESIDUE UNX A 167 A UNX 167 Software 2 BINDING SITE FOR RESIDUE UNX A 168 A UNX 168 Software 3 BINDING SITE FOR RESIDUE UNX A 169 A UNX 169 Software 4 BINDING SITE FOR RESIDUE UNX A 170 A UNX 170 Software 3 BINDING SITE FOR RESIDUE UNX A 171 A UNX 171 Software 5 BINDING SITE FOR RESIDUE UNX A 172 A UNX 172 Software 4 BINDING SITE FOR RESIDUE UNX A 173 A UNX 173 Software 3 BINDING SITE FOR RESIDUE UNX A 174 A UNX 174 Software 3 BINDING SITE FOR RESIDUE UNX A 175 A UNX 175 Software 5 BINDING SITE FOR RESIDUE UNX A 176 A UNX 176 Software 3 BINDING SITE FOR RESIDUE UNX A 177 A UNX 177 Software 3 BINDING SITE FOR RESIDUE UNX A 178 A UNX 178 Software 9 BINDING SITE FOR RESIDUE UNX A 179 A UNX 179 Software 6 BINDING SITE FOR RESIDUE UNX A 180 A UNX 180 Software 6 BINDING SITE FOR RESIDUE UNX A 181 A UNX 181 Software 7 BINDING SITE FOR RESIDUE UNX A 182 A UNX 182 Software 6 BINDING SITE FOR RESIDUE UNX A 183 A UNX 183 Software 6 BINDING SITE FOR RESIDUE UNX A 184 A UNX 184 Software 7 A UNX 164 C UNX 4 1_555 A UNX 165 D UNX 4 1_555 A UNX 166 E UNX 4 1_555 A SER 257 A SER 39 4 10_555 A UNX 163 B UNX 5 1_555 A UNX 165 D UNX 5 1_555 A UNX 166 E UNX 5 1_555 A PHE 271 A PHE 53 5 1_555 A GLY 272 A GLY 54 5 1_555 A UNX 163 B UNX 5 1_555 A UNX 164 C UNX 5 1_555 A UNX 166 E UNX 5 1_555 A SER 257 A SER 39 5 10_555 A GLY 274 A GLY 56 5 1_555 A HOH 40 X HOH 7 1_555 A UNX 163 B UNX 7 1_555 A UNX 164 C UNX 7 1_555 A UNX 165 D UNX 7 1_555 A GLN 269 A GLN 51 7 1_555 A TRP 270 A TRP 52 7 1_555 A GLY 274 A GLY 56 7 1_555 A HOH 100 X HOH 2 1_555 A UNX 168 G UNX 2 1_555 A HOH 61 X HOH 3 1_555 A UNX 167 F UNX 3 1_555 A TRP 342 A TRP 124 3 1_555 A HOH 103 X HOH 4 1_555 A HOH 120 X HOH 4 1_555 A UNX 170 I UNX 4 1_555 A UNX 171 J UNX 4 1_555 A UNX 169 H UNX 3 1_555 A UNX 171 J UNX 3 1_555 A LYS 348 A LYS 130 3 8_665 A HOH 88 X HOH 5 1_555 A HOH 100 X HOH 5 8_665 A UNX 169 H UNX 5 1_555 A UNX 170 I UNX 5 1_555 A ALA 297 A ALA 79 5 1_555 A UNX 173 L UNX 4 1_555 A UNX 174 M UNX 4 1_555 A LYS 315 A LYS 97 4 1_555 A ARG 319 A ARG 101 4 1_555 A HOH 121 X HOH 3 1_555 A UNX 172 K UNX 3 1_555 A UNX 174 M UNX 3 1_555 A UNX 172 K UNX 3 1_555 A UNX 173 L UNX 3 1_555 A GLY 233 A GLY 15 3 1_555 A HOH 7 X HOH 5 1_555 A HOH 130 X HOH 5 1_555 A UNX 176 O UNX 5 1_555 A UNX 177 P UNX 5 1_555 A LYS 315 A LYS 97 5 1_555 A UNX 175 N UNX 3 1_555 A UNX 177 P UNX 3 1_555 A VAL 318 A VAL 100 3 1_555 A UNX 175 N UNX 3 1_555 A UNX 176 O UNX 3 1_555 A LYS 315 A LYS 97 3 1_555 A UNX 179 R UNX 9 1_555 A UNX 181 T UNX 9 1_555 A UNX 182 U UNX 9 1_555 A UNX 183 V UNX 9 1_555 A UNX 184 W UNX 9 1_555 A GLY 288 A GLY 70 9 1_555 A PHE 290 A PHE 72 9 1_555 A SER 291 A SER 73 9 1_555 A GLN 292 A GLN 74 9 1_555 A HOH 60 X HOH 6 10_665 A UNX 178 Q UNX 6 1_555 A UNX 180 S UNX 6 1_555 A UNX 181 T UNX 6 1_555 A ASP 282 A ASP 64 6 10_665 A GLN 292 A GLN 74 6 1_555 A HOH 85 X HOH 6 1_555 A HOH 151 X HOH 6 10_665 A UNX 179 R UNX 6 1_555 A UNX 181 T UNX 6 1_555 A UNX 184 W UNX 6 1_555 A GLY 288 A GLY 70 6 1_555 A UNX 178 Q UNX 7 1_555 A UNX 179 R UNX 7 1_555 A UNX 180 S UNX 7 1_555 A UNX 182 U UNX 7 1_555 A UNX 183 V UNX 7 1_555 A UNX 184 W UNX 7 1_555 A ASP 282 A ASP 64 7 10_665 A UNX 178 Q UNX 6 1_555 A UNX 181 T UNX 6 1_555 A UNX 183 V UNX 6 1_555 A UNX 184 W UNX 6 1_555 A ALA 343 A ALA 125 6 1_555 A GLY 346 A GLY 128 6 1_555 A UNX 178 Q UNX 6 1_555 A UNX 181 T UNX 6 1_555 A UNX 182 U UNX 6 1_555 A ASP 282 A ASP 64 6 10_665 A SER 291 A SER 73 6 1_555 A HIS 344 A HIS 126 6 1_555 A UNX 178 Q UNX 7 1_555 A UNX 180 S UNX 7 1_555 A UNX 181 T UNX 7 1_555 A UNX 182 U UNX 7 1_555 A GLY 288 A GLY 70 7 1_555 A PHE 347 A PHE 129 7 1_555 A ILE 352 A ILE 134 7 1_555 179 P 65 2 2