1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Chang, K.Y. Tinoco Jr, I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 269 52 66 10.1006/jmbi.1997.1021 9193000 The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complement. 1997 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 91 8705 Characterization of a "Kissing" Hairpin Complex Derived from the Human Immunodeficiency Virus Genome 1994 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 5168.135 RNA (5'-R(*GP*AP*GP*CP*CP*CP*UP*GP*GP*GP*AP*GP*GP*CP*UP*C)-3') TRANSCRIPTIONAL ACTIVATION RESPONSE (TAR) REGION 1 syn polymer 5073.071 RNA (5'-R(*GP*CP*UP*GP*UP*UP*CP*CP*CP*AP*GP*AP*CP*AP*GP*C)-3') COMPLEMENTARY LOOP SEQUENCE (TAR*) REGION 1 syn polymer no no GAGCCCUGGGAGGCUC GAGCCCUGGGAGGCUC A polyribonucleotide no no GCUGUUCCCAGACAGC GCUGUUCCCAGACAGC B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n -23.917 1 19 A 1 A 16 -5.982 A_G1:C16_A 1 -8.368 -0.085 0.755 -0.138 3.144 1 20 A 2 A 15 -4.184 A_A2:U15_A 2 8.371 0.316 1.238 -0.111 20.745 1 19 A 3 A 14 -1.525 A_G3:C14_A 3 1.056 -0.091 -1.031 -0.304 5.964 1 19 A 4 A 13 -7.842 A_C4:G13_A 4 -0.668 -0.300 1.921 -1.171 11.513 1 19 A 5 A 12 -7.576 A_C5:G12_A 5 -3.715 -0.052 1.458 -0.590 26.961 1 20 B 22 A 11 -0.751 B_U22:A11_A 6 -24.863 -0.512 -1.194 -0.005 -0.001 1 19 B 23 A 10 -2.114 B_C23:G10_A 7 3.078 -0.055 2.077 -1.323 -1.365 1 19 B 24 A 9 -6.085 B_C24:G9_A 8 3.423 -0.447 2.020 -1.134 -13.415 1 19 B 25 A 8 -8.078 B_C25:G8_A 9 5.557 -0.341 2.129 -0.921 15.052 1 20 B 26 A 7 -11.280 B_A26:U7_A 10 -0.805 0.633 2.137 -0.954 -13.517 1 19 B 27 A 6 -6.130 B_G27:C6_A 11 -37.995 -0.517 0.150 -0.145 -30.909 1 20 B 28 B 21 -2.814 B_A28:U21_B 12 -25.495 0.469 -1.049 0.089 -1.661 1 19 B 29 B 20 -6.607 B_C29:G20_B 13 -2.919 0.026 -0.040 0.131 38.041 1 20 B 30 B 19 -6.435 B_A30:U19_B 14 -6.078 0.515 0.560 0.327 19.472 1 19 B 31 B 18 6.861 B_G31:C18_B 15 -4.743 -0.213 -1.396 -0.725 1.499 1 19 B 32 B 17 -5.715 B_C32:G17_B 16 1.155 0.064 0.888 -0.056 2.540 33.909 A A 1 2 5.529 A A 16 15 2.606 3.214 -0.832 -1.400 AA_G1A2:U15C16_AA 1 -3.762 6.472 33.557 -2.808 0.949 2.947 29.752 A A 2 3 12.000 A A 15 14 3.518 5.974 -0.145 -1.006 AA_A2G3:C14U15_AA 2 11.119 -22.333 26.997 -3.259 2.702 2.678 48.213 A A 3 4 42.094 A A 14 13 4.400 31.179 -0.605 -1.062 AA_G3C4:G13C14_AA 3 -14.916 20.138 34.142 -4.462 -0.772 2.405 38.108 A A 4 5 23.116 A A 13 12 3.258 14.705 0.504 -1.734 AA_C4C5:G12G13_AA 4 3.642 -5.726 35.070 -4.341 -0.355 2.812 46.408 A B 5 22 -28.841 A A 12 11 3.297 -21.623 -0.938 -0.551 AB_C5U22:A11G12_AA 5 12.866 -17.161 39.316 1.172 2.304 3.832 47.707 B B 22 23 13.944 A A 11 10 4.638 10.770 -0.336 -1.522 BB_U22C23:G10A11_AA 6 -22.655 29.333 40.912 -3.095 -2.137 3.360 25.790 B B 23 24 23.096 A A 10 9 4.075 10.036 0.315 -0.966 BB_C23C24:G9G10_AA 7 -1.813 4.172 23.719 -5.492 -1.307 2.095 52.847 B B 24 25 31.761 A A 9 8 3.602 27.089 0.414 -2.147 BB_C24C25:G8G9_AA 8 -1.678 1.967 45.781 -4.069 -0.568 1.572 33.162 B B 25 26 9.995 A A 8 7 1.955 5.678 0.537 -2.129 BB_C25A26:U7G8_AA 9 -0.069 0.122 32.685 -4.249 -0.946 3.192 45.940 B B 26 27 15.688 A A 7 6 3.799 11.874 0.668 -1.963 BB_A26G27:C6U7_AA 10 16.150 -21.338 41.551 -3.674 0.720 3.896 58.804 B B 27 28 4.981 A B 6 21 3.722 4.876 1.371 0.689 BB_G27A28:U21C6_BA 11 7.351 -7.510 58.197 0.407 -0.952 2.169 28.040 B B 28 29 20.189 B B 21 20 2.407 9.489 -0.526 -0.454 BB_A28C29:G20U21_BB 12 -7.005 14.904 25.484 -2.582 -0.129 2.041 30.717 B B 29 30 6.439 B B 20 19 2.220 3.396 0.683 -0.655 BB_C29A30:U19G20_BB 13 -3.696 7.006 30.314 -1.673 -1.765 5.275 30.572 B B 30 31 -0.964 B B 19 18 5.152 -0.502 1.120 -0.869 BB_A30G31:C18U19_BB 14 8.548 -16.422 29.376 -1.487 0.633 3.408 35.791 B B 31 32 19.898 B B 18 17 4.277 11.902 -0.554 -2.007 BB_G31C32:G17C18_BB 15 -8.178 13.674 32.836 -5.372 -0.546 audit_author citation_author entity ndb_struct_conf_na ndb_struct_na_base_pair ndb_struct_na_base_pair_step pdbx_database_status pdbx_entity_src_syn pdbx_nmr_ensemble pdbx_nmr_refine pdbx_nmr_representative pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_assembly_prop pdbx_struct_oper_list struct_conn repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other Refinement description Source and taxonomy Structure summary 1 0 1997-10-15 1 1 2008-03-03 1 2 2011-07-13 1 3 2019-08-21 _audit_author.name _citation_author.name _entity.details _entity.pdbx_fragment _ndb_struct_conf_na.feature _pdbx_database_status.process_site _pdbx_entity_src_syn.details _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.organism_scientific _pdbx_nmr_ensemble.conformer_selection_criteria _pdbx_nmr_refine.details _pdbx_nmr_refine.method _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.model Y BNL 1997-06-11 REL REL THE OLIGONUCLEOTIDES WERE SYNTHESIZED ENZYMATICALLY. 32630 synthetic construct sample THE OLIGONUCLEOTIDES WERE SYNTHESIZED ENZYMATICALLY. 32630 synthetic construct sample structures with the lowest energy 17 1 simulated annealing-restrained molecular dynamics protocol followed by an energy minimization step simulated annealing 1 lowest energy BRUNGER refinement X-PLOR 3.1 500 GE OMEGA 600 Bruker AMX G 1 n 1 G 1 A A 2 n 2 A 2 A G 3 n 3 G 3 A C 4 n 4 C 4 A C 5 n 5 C 5 A C 6 n 6 C 6 A U 7 n 7 U 7 A G 8 n 8 G 8 A G 9 n 9 G 9 A G 10 n 10 G 10 A A 11 n 11 A 11 A G 12 n 12 G 12 A G 13 n 13 G 13 A C 14 n 14 C 14 A U 15 n 15 U 15 A C 16 n 16 C 16 A G 17 n 1 G 17 B C 18 n 2 C 18 B U 19 n 3 U 19 B G 20 n 4 G 20 B U 21 n 5 U 21 B U 22 n 6 U 22 B C 23 n 7 C 23 B C 24 n 8 C 24 B C 25 n 9 C 25 B A 26 n 10 A 26 B G 27 n 11 G 27 B A 28 n 12 A 28 B C 29 n 13 C 29 B A 30 n 14 A 30 B G 31 n 15 G 31 B C 32 n 16 C 32 B author_defined_assembly 2 dimeric 850 -3 5990 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 5'-R(*GP*AP*GP*CP*CP*CP*UP*GP*GP*GP*AP*GP*GP*CP*UP*C)-3', 5'-R(*GP*CP*UP*GP*UP*UP*CP*CP*CP*AP*GP*AP*CP*AP*GP*C)-3' TAR-TAR "KISSING" HAIRPIN COMPLEX DERIVED FROM THE HIV GENOME, NMR, 1 STRUCTURE 1 N N 2 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 16 A N3 C 16 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 16 A O2 C 16 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 16 A N4 C 16 1_555 hydrog WATSON-CRICK A A 2 A N1 A 2 1_555 A U 15 A N3 U 15 1_555 hydrog WATSON-CRICK A A 2 A N6 A 2 1_555 A U 15 A O4 U 15 1_555 hydrog WATSON-CRICK A G 3 A N1 G 3 1_555 A C 14 A N3 C 14 1_555 hydrog WATSON-CRICK A G 3 A N2 G 3 1_555 A C 14 A O2 C 14 1_555 hydrog WATSON-CRICK A G 3 A O6 G 3 1_555 A C 14 A N4 C 14 1_555 hydrog WATSON-CRICK A C 4 A N3 C 4 1_555 A G 13 A N1 G 13 1_555 hydrog WATSON-CRICK A C 4 A N4 C 4 1_555 A G 13 A O6 G 13 1_555 hydrog WATSON-CRICK A C 4 A O2 C 4 1_555 A G 13 A N2 G 13 1_555 hydrog WATSON-CRICK A C 5 A N3 C 5 1_555 A G 12 A N1 G 12 1_555 hydrog WATSON-CRICK A C 5 A N4 C 5 1_555 A G 12 A O6 G 12 1_555 hydrog WATSON-CRICK A C 5 A O2 C 5 1_555 A G 12 A N2 G 12 1_555 hydrog WATSON-CRICK A C 6 A N3 C 6 1_555 B G 27 B N1 G 11 1_555 hydrog WATSON-CRICK A C 6 A N4 C 6 1_555 B G 27 B O6 G 11 1_555 hydrog WATSON-CRICK A C 6 A O2 C 6 1_555 B G 27 B N2 G 11 1_555 hydrog WATSON-CRICK A U 7 A N3 U 7 1_555 B A 26 B N1 A 10 1_555 hydrog WATSON-CRICK A U 7 A O4 U 7 1_555 B A 26 B N6 A 10 1_555 hydrog G-C PAIR A G 8 A O6 G 8 1_555 B C 24 B N4 C 8 1_555 hydrog WATSON-CRICK A G 8 A N1 G 8 1_555 B C 25 B N3 C 9 1_555 hydrog WATSON-CRICK A G 8 A N2 G 8 1_555 B C 25 B O2 C 9 1_555 hydrog WATSON-CRICK A G 8 A O6 G 8 1_555 B C 25 B N4 C 9 1_555 hydrog WATSON-CRICK A G 9 A N1 G 9 1_555 B C 24 B N3 C 8 1_555 hydrog WATSON-CRICK A G 9 A N2 G 9 1_555 B C 24 B O2 C 8 1_555 hydrog WATSON-CRICK A G 9 A O6 G 9 1_555 B C 24 B N4 C 8 1_555 hydrog WATSON-CRICK A G 10 A N1 G 10 1_555 B C 23 B N3 C 7 1_555 hydrog WATSON-CRICK A G 10 A N2 G 10 1_555 B C 23 B O2 C 7 1_555 hydrog WATSON-CRICK A G 10 A O6 G 10 1_555 B C 23 B N4 C 7 1_555 hydrog WATSON-CRICK A A 11 A N1 A 11 1_555 B U 22 B N3 U 6 1_555 hydrog WATSON-CRICK A A 11 A N6 A 11 1_555 B U 22 B O4 U 6 1_555 hydrog WATSON-CRICK B G 17 B N1 G 1 1_555 B C 32 B N3 C 16 1_555 hydrog WATSON-CRICK B G 17 B N2 G 1 1_555 B C 32 B O2 C 16 1_555 hydrog WATSON-CRICK B G 17 B O6 G 1 1_555 B C 32 B N4 C 16 1_555 hydrog WATSON-CRICK B C 18 B N3 C 2 1_555 B G 31 B N1 G 15 1_555 hydrog WATSON-CRICK B C 18 B N4 C 2 1_555 B G 31 B O6 G 15 1_555 hydrog WATSON-CRICK B C 18 B O2 C 2 1_555 B G 31 B N2 G 15 1_555 hydrog WATSON-CRICK B U 19 B N3 U 3 1_555 B A 30 B N1 A 14 1_555 hydrog WATSON-CRICK B U 19 B O4 U 3 1_555 B A 30 B N6 A 14 1_555 hydrog WATSON-CRICK B G 20 B N1 G 4 1_555 B C 29 B N3 C 13 1_555 hydrog WATSON-CRICK B G 20 B N2 G 4 1_555 B C 29 B O2 C 13 1_555 hydrog WATSON-CRICK B G 20 B O6 G 4 1_555 B C 29 B N4 C 13 1_555 hydrog WATSON-CRICK B U 21 B N3 U 5 1_555 B A 28 B N1 A 12 1_555 hydrog WATSON-CRICK B U 21 B O4 U 5 1_555 B A 28 B N6 A 12 1_555 RNA RIBONUCLEIC ACID, RNA 1KIS PDB 1 1KIS 1KIS PDB 2 1KIS 1 16 1KIS 1 16 1KIS A 1 1 16 17 32 1KIS 17 32 1KIS B 2 1 16 1 P 1